AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52411

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52411.t1 MTR_2g436750 95.681 301 6 1 1 301 1 294 0.0 571
MS.gene52411.t1 MTR_6g007663 35.227 352 163 6 5 301 31 372 1.32e-57 189
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52411.t1 AT4G15830 55.738 305 117 5 1 299 1 293 1.28e-109 320
MS.gene52411.t1 AT3G01450 40.711 253 140 2 54 301 67 314 5.73e-62 199
MS.gene52411.t1 AT3G01450 40.711 253 140 2 54 301 67 314 5.73e-62 199
MS.gene52411.t1 AT5G14790 39.695 262 139 4 54 301 70 326 7.14e-62 200
MS.gene52411.t1 AT3G18530 48.227 141 68 1 94 234 9 144 5.37e-35 127
MS.gene52411.t1 AT3G18530 49.231 130 61 1 105 234 1 125 4.30e-32 119
MS.gene52411.t1 AT3G18530 50.000 124 57 1 111 234 124 242 1.86e-29 115

Find 61 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATCTGACATGGGTTTC+AGG 0.101075 2.3:+54627943 None:intergenic
TGCTGTTGCTGCTGTGGTTT+TGG 0.159324 2.3:+54628041 None:intergenic
AGTGGCAAACTTTACCATTT+TGG 0.234145 2.3:+54626757 None:intergenic
GCAGAGTTTGATTGAAGATT+TGG 0.260333 2.3:-54627815 MS.gene52411:intron
ATTGAGGAAATGGAGGAGTT+TGG 0.270099 2.3:-54626576 MS.gene52411:CDS
AAAATTGAAAGAGCATTAAT+TGG 0.272815 2.3:+54626384 None:intergenic
TCCATTTCTGAGGCATTTGA+TGG 0.287057 2.3:-54627474 MS.gene52411:CDS
TTTATGCAAAACCTCTATTA+TGG 0.287797 2.3:-54627544 MS.gene52411:CDS
CTTGCTGCATCTCTTGCCTC+TGG 0.306269 2.3:+54626504 None:intergenic
TTCTGAGGCATTTGATGGCT+TGG 0.330088 2.3:-54627469 MS.gene52411:intron
ATCCAAATGTGTCTCCAAAA+TGG 0.333713 2.3:-54626771 MS.gene52411:intron
TTGAGGAAATGGAGGAGTTT+GGG 0.339563 2.3:-54626575 MS.gene52411:CDS
CTTACTTGAATCTGAGCTTC+AGG 0.347459 2.3:+54627924 None:intergenic
GGTCTTTCTTGGGTTATTGT+TGG 0.354496 2.3:+54628095 None:intergenic
TTCCATTGCTTCAGAAACTA+AGG 0.397711 2.3:-54626847 MS.gene52411:CDS
GCCATCAAATGCCTCAGAAA+TGG 0.405071 2.3:+54627473 None:intergenic
GTTGGAAGAGCATTGTCAAT+AGG 0.411759 2.3:+54628113 None:intergenic
TGTGGAAGAGGAACAGAAGA+TGG 0.425574 2.3:-54626442 MS.gene52411:CDS
TTGCTGCATCTCTTGCCTCT+GGG 0.433357 2.3:+54626505 None:intergenic
GTGAGTCCTTGAACGATGTT+AGG 0.437164 2.3:-54627768 MS.gene52411:CDS
AAAATCAATCCTTACAAAAT+GGG 0.442598 2.3:+54627712 None:intergenic
CAGCTTTAGCCCTGATCCTA+AGG 0.446309 2.3:+54626804 None:intergenic
TTGTGTGTGAAGAAGCTGAT+AGG 0.451109 2.3:-54626904 MS.gene52411:CDS
TGATAGGGCACTTGGATCAA+TGG 0.469114 2.3:-54626888 MS.gene52411:CDS
AAATCGCCTAACATCGTTCA+AGG 0.470782 2.3:+54627762 None:intergenic
GCAGCAGGGAATTGAGGAAA+TGG 0.471845 2.3:-54626586 MS.gene52411:intron
TAATCAATGGTGGGTTCCAA+TGG 0.479929 2.3:+54627981 None:intergenic
AACCTTAGTTTCTGAAGCAA+TGG 0.485737 2.3:+54626845 None:intergenic
ATTATGGCAGCAGGGAATTG+AGG 0.494357 2.3:-54626592 MS.gene52411:intron
GCTGCTGCTGAAATCTTCTC+AGG 0.502458 2.3:-54626936 MS.gene52411:CDS
TATTGCAACTTCAGTGTATG+AGG 0.503870 2.3:-54626478 MS.gene52411:CDS
AGTGTATGAGGCAATCATTA+AGG 0.512370 2.3:-54626466 MS.gene52411:CDS
GTCAGATGAAATATAATCAA+TGG 0.512715 2.3:+54627968 None:intergenic
GGTTGTTGCTGTTGCTGCTG+TGG 0.527140 2.3:+54628035 None:intergenic
TGAGGCAATCATTAAGGATG+TGG 0.528288 2.3:-54626460 MS.gene52411:CDS
ATCAGAAGCAGCCATAATAG+AGG 0.530469 2.3:+54627533 None:intergenic
AATCATTAAGGATGTGGAAG+AGG 0.535129 2.3:-54626454 MS.gene52411:CDS
TAGGGATAAAATTGTGTTGG+TGG 0.538015 2.3:-54627598 MS.gene52411:CDS
GTTTGATCCTTCCATTTCTG+AGG 0.538757 2.3:-54627484 MS.gene52411:CDS
GGAAATGGAGGAGTTTGGGA+TGG 0.539001 2.3:-54626571 MS.gene52411:CDS
AATCAATGGTGGGTTCCAAT+GGG 0.540052 2.3:+54627982 None:intergenic
GAAGAAGCTGATAGGGCACT+TGG 0.542782 2.3:-54626896 MS.gene52411:CDS
TGATGAAAATCAAATCCCAT+TGG 0.544278 2.3:-54627997 MS.gene52411:CDS
CTGAGCTTCAGGATCTGACA+TGG 0.548880 2.3:+54627935 None:intergenic
AATTGTGTTGGTGGTGGTGA+AGG 0.551275 2.3:-54627589 MS.gene52411:CDS
AGTTTCTGAAGCAATGGAAG+AGG 0.555513 2.3:+54626851 None:intergenic
GGATAAAATTGTGTTGGTGG+TGG 0.561353 2.3:-54627595 MS.gene52411:CDS
AAGCAATGGAAGAGGTGTCA+TGG 0.567617 2.3:+54626859 None:intergenic
AGATGAAATATAATCAATGG+TGG 0.574708 2.3:+54627971 None:intergenic
AGGAACAGAAGATGGAAGTG+TGG 0.576946 2.3:-54626434 MS.gene52411:CDS
GATTAGGGATAAAATTGTGT+TGG 0.587172 2.3:-54627601 MS.gene52411:intron
TAGGGCACTTGGATCAATGG+TGG 0.605281 2.3:-54626885 MS.gene52411:CDS
TAATTGGTGTTAGTTTAGAG+TGG 0.612462 2.3:+54626400 None:intergenic
AGGGCACTTGGATCAATGGT+GGG 0.613700 2.3:-54626884 MS.gene52411:CDS
TGTGTGTGAAGAAGCTGATA+GGG 0.615409 2.3:-54626903 MS.gene52411:CDS
GATGAAATATAATCAATGGT+GGG 0.618538 2.3:+54627972 None:intergenic
TCAAATGCCTCAGAAATGGA+AGG 0.629609 2.3:+54627477 None:intergenic
TGAGCTTCAGGATCTGACAT+GGG 0.635005 2.3:+54627936 None:intergenic
GCAGGGAATTGAGGAAATGG+AGG 0.641748 2.3:-54626583 MS.gene52411:intron
TCATCATTGGAAGAAGTACG+AGG 0.693109 2.3:+54628014 None:intergenic
AGTGAATGATAGACTCCCAG+AGG 0.721160 2.3:-54626520 MS.gene52411:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAAATATTAATTCTAT+TGG - chr2.3:54627479-54627498 MS.gene52411:CDS 10.0%
!!! ATTAAATCAATTTGTTTTAT+TGG - chr2.3:54627840-54627859 MS.gene52411:intron 10.0%
!!! AAGTTTTGAAATTTTTGTTA+TGG - chr2.3:54626819-54626838 MS.gene52411:CDS 15.0%
!! AAAAATCAATCCTTACAAAA+TGG + chr2.3:54626782-54626801 None:intergenic 20.0%
!! AAAATCAATCCTTACAAAAT+GGG + chr2.3:54626781-54626800 None:intergenic 20.0%
!! AATTCATATACACCATTAAT+TGG + chr2.3:54627823-54627842 None:intergenic 20.0%
!! GTATCATATCATAATTCAAA+TGG + chr2.3:54627759-54627778 None:intergenic 20.0%
!! TTGAATTATGATATGATACA+TGG - chr2.3:54627760-54627779 MS.gene52411:CDS 20.0%
!!! AAAATTGAAAGAGCATTAAT+TGG + chr2.3:54628109-54628128 None:intergenic 20.0%
!!! ATTTGTTTTATTGGTGTTTT+TGG - chr2.3:54627849-54627868 MS.gene52411:intron 20.0%
!!! ATTTTTGTTATGGATTGAAT+TGG - chr2.3:54626829-54626848 MS.gene52411:CDS 20.0%
!!! GAATTTTTTTACTTGTGATT+TGG - chr2.3:54626625-54626644 MS.gene52411:intron 20.0%
!!! GTTTCTAAAGAGTATTATTA+TGG - chr2.3:54627882-54627901 MS.gene52411:intron 20.0%
!!! TTTGTTTTATTGGTGTTTTT+GGG - chr2.3:54627850-54627869 MS.gene52411:intron 20.0%
!!! TTTTTGTTATGGATTGAATT+GGG - chr2.3:54626830-54626849 MS.gene52411:CDS 20.0%
! AAATTGAACCAAATTAGACT+TGG - chr2.3:54627221-54627240 MS.gene52411:intron 25.0%
! AACATATCACAACCAATTAA+TGG - chr2.3:54627808-54627827 MS.gene52411:CDS 25.0%
! AAGATTTGGATTCAAAAAAC+TGG - chr2.3:54626689-54626708 MS.gene52411:intron 25.0%
! AGATGAAATATAATCAATGG+TGG + chr2.3:54626522-54626541 None:intergenic 25.0%
! AGATTTGGATTCAAAAAACT+GGG - chr2.3:54626690-54626709 MS.gene52411:intron 25.0%
! ATATCATAATTCAAATGGAG+TGG + chr2.3:54627754-54627773 None:intergenic 25.0%
! ATGTGAAGTTTGTATGATTA+GGG - chr2.3:54626874-54626893 MS.gene52411:CDS 25.0%
! GATGAAATATAATCAATGGT+GGG + chr2.3:54626521-54626540 None:intergenic 25.0%
! GTCAGATGAAATATAATCAA+TGG + chr2.3:54626525-54626544 None:intergenic 25.0%
! TTTATGCAAAACCTCTATTA+TGG - chr2.3:54626946-54626965 MS.gene52411:CDS 25.0%
!! TCTGATATTTTCAATGCTTT+TGG - chr2.3:54626974-54626993 MS.gene52411:intron 25.0%
AATTGGTTGTGATATGTTGA+CGG + chr2.3:54627806-54627825 None:intergenic 30.0%
AGGTTTAACCAAGTCTAATT+TGG + chr2.3:54627232-54627251 None:intergenic 30.0%
GATGTGAAGTTTGTATGATT+AGG - chr2.3:54626873-54626892 MS.gene52411:CDS 30.0%
GATTAGGGATAAAATTGTGT+TGG - chr2.3:54626889-54626908 MS.gene52411:CDS 30.0%
TATGATATGATACATGGTCT+AGG - chr2.3:54627766-54627785 MS.gene52411:CDS 30.0%
TGATGAAAATCAAATCCCAT+TGG - chr2.3:54626493-54626512 MS.gene52411:CDS 30.0%
! AATGTTGAATTGTGTTGTTC+TGG - chr2.3:54627509-54627528 MS.gene52411:CDS 30.0%
! CTTCTATTACCCATTTTGTA+AGG - chr2.3:54626769-54626788 MS.gene52411:intron 30.0%
!! TAATTGGTGTTAGTTTAGAG+TGG + chr2.3:54628093-54628112 None:intergenic 30.0%
!! TGCTCTTTCAATTTTGAAGA+TGG - chr2.3:54628114-54628133 MS.gene52411:CDS 30.0%
!! TGGGATTTGATTTTCATCAT+TGG + chr2.3:54626492-54626511 None:intergenic 30.0%
!!! AGCGATTTTAGGTTGTTTTT+TGG + chr2.3:54626420-54626439 None:intergenic 30.0%
!!! GCGATTTTAGGTTGTTTTTT+GGG + chr2.3:54626419-54626438 None:intergenic 30.0%
!!! TTGTTTTTTGGGTCTTTCTT+GGG + chr2.3:54626408-54626427 None:intergenic 30.0%
AAATTGAACCGAATTAGACC+TGG - chr2.3:54627352-54627371 MS.gene52411:intron 35.0%
AATCATTAAGGATGTGGAAG+AGG - chr2.3:54628036-54628055 MS.gene52411:CDS 35.0%
AGTGTATGAGGCAATCATTA+AGG - chr2.3:54628024-54628043 MS.gene52411:CDS 35.0%
ATCCAAATGTGTCTCCAAAA+TGG - chr2.3:54627719-54627738 MS.gene52411:intron 35.0%
CATTATTTCGATGTCTGGTT+AGG - chr2.3:54627455-54627474 MS.gene52411:intron 35.0%
GCAGAGTTTGATTGAAGATT+TGG - chr2.3:54626675-54626694 MS.gene52411:intron 35.0%
TAGGGATAAAATTGTGTTGG+TGG - chr2.3:54626892-54626911 MS.gene52411:CDS 35.0%
TATTGCAACTTCAGTGTATG+AGG - chr2.3:54628012-54628031 MS.gene52411:CDS 35.0%
TCACAAAAACCTTAGGATCA+GGG - chr2.3:54627677-54627696 MS.gene52411:intron 35.0%
TTCCATTGCTTCAGAAACTA+AGG - chr2.3:54627643-54627662 MS.gene52411:intron 35.0%
! AGAGTATTATTATGGCAGCA+GGG - chr2.3:54627890-54627909 MS.gene52411:intron 35.0%
! AGTGGCAAACTTTACCATTT+TGG + chr2.3:54627736-54627755 None:intergenic 35.0%
! GTTATGGATTGAATTGGGTT+TGG - chr2.3:54626835-54626854 MS.gene52411:CDS 35.0%
!! AACCTTAGTTTCTGAAGCAA+TGG + chr2.3:54627648-54627667 None:intergenic 35.0%
!! AAGAGTATTATTATGGCAGC+AGG - chr2.3:54627889-54627908 MS.gene52411:intron 35.0%
!! TACCATTTTGGAGACACATT+TGG + chr2.3:54627724-54627743 None:intergenic 35.0%
!! TTTTGCATAAAGCACTACGA+GGG + chr2.3:54626937-54626956 None:intergenic 35.0%
!!! GTTGTTTTTTGGGTCTTTCT+TGG + chr2.3:54626409-54626428 None:intergenic 35.0%
AAAATCGTGATCAAGCTGTC+CGG + chr2.3:54627259-54627278 None:intergenic 40.0%
AAATCGCCTAACATCGTTCA+AGG + chr2.3:54626731-54626750 None:intergenic 40.0%
AAATTGAACCGAACTAGACC+TGG - chr2.3:54627090-54627109 MS.gene52411:intron 40.0%
AGGTTCAACCAGGTCTAATT+CGG + chr2.3:54627363-54627382 None:intergenic 40.0%
ATCAGAAGCAGCCATAATAG+AGG + chr2.3:54626960-54626979 None:intergenic 40.0%
ATTGAGGAAATGGAGGAGTT+TGG - chr2.3:54627914-54627933 MS.gene52411:intron 40.0%
CTGTGAGTCACAAAAACCTT+AGG - chr2.3:54627670-54627689 MS.gene52411:intron 40.0%
CTTACTTGAATCTGAGCTTC+AGG + chr2.3:54626569-54626588 None:intergenic 40.0%
GACCTGGTTGAACCTTTAAT+CGG - chr2.3:54627368-54627387 MS.gene52411:intron 40.0%
GGATTCAAAAAACTGGGTCA+AGG - chr2.3:54626696-54626715 MS.gene52411:intron 40.0%
GGTCTCATTATTTCGATGTC+TGG - chr2.3:54627450-54627469 MS.gene52411:intron 40.0%
GGTCTTTCTTGGGTTATTGT+TGG + chr2.3:54626398-54626417 None:intergenic 40.0%
GTCACAAAAACCTTAGGATC+AGG - chr2.3:54627676-54627695 MS.gene52411:intron 40.0%
GTTTGATCCTTCCATTTCTG+AGG - chr2.3:54627006-54627025 MS.gene52411:intron 40.0%
TCAAATGCCTCAGAAATGGA+AGG + chr2.3:54627016-54627035 None:intergenic 40.0%
TGAGGCAATCATTAAGGATG+TGG - chr2.3:54628030-54628049 MS.gene52411:CDS 40.0%
TGATTGAGCTGTCCGATTAA+AGG + chr2.3:54627383-54627402 None:intergenic 40.0%
TGTGTGTGAAGAAGCTGATA+GGG - chr2.3:54627587-54627606 MS.gene52411:CDS 40.0%
TTGAGGAAATGGAGGAGTTT+GGG - chr2.3:54627915-54627934 MS.gene52411:intron 40.0%
TTGTGTGTGAAGAAGCTGAT+AGG - chr2.3:54627586-54627605 MS.gene52411:CDS 40.0%
! CTGATTTGAGCTGTTTAAGG+CGG - chr2.3:54627151-54627170 MS.gene52411:intron 40.0%
! GGATAAAATTGTGTTGGTGG+TGG - chr2.3:54626895-54626914 MS.gene52411:CDS 40.0%
! GTCCTGATTTGAGCTGTTTA+AGG - chr2.3:54627148-54627167 MS.gene52411:intron 40.0%
! TCATCATTGGAAGAAGTACG+AGG + chr2.3:54626479-54626498 None:intergenic 40.0%
! TGATTTGAGCTGTTTAAGGC+GGG - chr2.3:54627152-54627171 MS.gene52411:intron 40.0%
!! AATCAATGGTGGGTTCCAAT+GGG + chr2.3:54626511-54626530 None:intergenic 40.0%
!! AGTTTCTGAAGCAATGGAAG+AGG + chr2.3:54627642-54627661 None:intergenic 40.0%
!! GTTGGAAGAGCATTGTCAAT+AGG + chr2.3:54626380-54626399 None:intergenic 40.0%
!! GTTTTGCATAAAGCACTACG+AGG + chr2.3:54626938-54626957 None:intergenic 40.0%
!! TAATCAATGGTGGGTTCCAA+TGG + chr2.3:54626512-54626531 None:intergenic 40.0%
!! TCCATTTCTGAGGCATTTGA+TGG - chr2.3:54627016-54627035 MS.gene52411:intron 40.0%
AAAATCGTGATCGAGCTGTC+CGG + chr2.3:54627128-54627147 None:intergenic 45.0%
AGGAACAGAAGATGGAAGTG+TGG - chr2.3:54628056-54628075 MS.gene52411:CDS 45.0%
AGGTTCAACCAGGTCTAGTT+CGG + chr2.3:54627101-54627120 None:intergenic 45.0%
AGTGAATGATAGACTCCCAG+AGG - chr2.3:54627970-54627989 MS.gene52411:CDS 45.0%
ATTATGGCAGCAGGGAATTG+AGG - chr2.3:54627898-54627917 MS.gene52411:intron 45.0%
CGCCTTAAACAGCTCAAATC+AGG + chr2.3:54627153-54627172 None:intergenic 45.0%
GACCTGGTTGAACCTTAAAC+CGG - chr2.3:54627106-54627125 MS.gene52411:intron 45.0%
GCCATCAAATGCCTCAGAAA+TGG + chr2.3:54627020-54627039 None:intergenic 45.0%
GTCCGATTAAAGGTTCAACC+AGG + chr2.3:54627373-54627392 None:intergenic 45.0%
GTGAGTCCTTGAACGATGTT+AGG - chr2.3:54626722-54626741 MS.gene52411:intron 45.0%
TGAGCTTCAGGATCTGACAT+GGG + chr2.3:54626557-54626576 None:intergenic 45.0%
TGTGGAAGAGGAACAGAAGA+TGG - chr2.3:54628048-54628067 MS.gene52411:CDS 45.0%
! CTGATTCGAGCTGTTTAAGG+CGG - chr2.3:54627282-54627301 MS.gene52411:intron 45.0%
! GACTTGGTTAAACCTTGAGC+CGG - chr2.3:54627237-54627256 MS.gene52411:intron 45.0%
! GTCCTGATTCGAGCTGTTTA+AGG - chr2.3:54627279-54627298 MS.gene52411:intron 45.0%
! TGATAGGGCACTTGGATCAA+TGG - chr2.3:54627602-54627621 MS.gene52411:intron 45.0%
! TGATTCGAGCTGTTTAAGGC+GGG - chr2.3:54627283-54627302 MS.gene52411:intron 45.0%
!! AAGCAATGGAAGAGGTGTCA+TGG + chr2.3:54627634-54627653 None:intergenic 45.0%
!! AATTGTGTTGGTGGTGGTGA+AGG - chr2.3:54626901-54626920 MS.gene52411:CDS 45.0%
!! TTCTGAGGCATTTGATGGCT+TGG - chr2.3:54627021-54627040 MS.gene52411:intron 45.0%
AAGGCGGGTGAATGACTATG+AGG - chr2.3:54627298-54627317 MS.gene52411:intron 50.0%
CAGGATCTGACATGGGTTTC+AGG + chr2.3:54626550-54626569 None:intergenic 50.0%
CGCCTTAAACAGCTCGAATC+AGG + chr2.3:54627284-54627303 None:intergenic 50.0%
CTGAGCTTCAGGATCTGACA+TGG + chr2.3:54626558-54626577 None:intergenic 50.0%
GCAGCAGGGAATTGAGGAAA+TGG - chr2.3:54627904-54627923 MS.gene52411:intron 50.0%
GCAGGGAATTGAGGAAATGG+AGG - chr2.3:54627907-54627926 MS.gene52411:intron 50.0%
GCTGCTGCTGAAATCTTCTC+AGG - chr2.3:54627554-54627573 MS.gene52411:CDS 50.0%
GGAAATGGAGGAGTTTGGGA+TGG - chr2.3:54627919-54627938 MS.gene52411:intron 50.0%
TGATCGAGCTGTCCGGTTTA+AGG + chr2.3:54627121-54627140 None:intergenic 50.0%
TTGCTGCATCTCTTGCCTCT+GGG + chr2.3:54627988-54628007 None:intergenic 50.0%
! AGGGCACTTGGATCAATGGT+GGG - chr2.3:54627606-54627625 MS.gene52411:intron 50.0%
! CAGCTTTAGCCCTGATCCTA+AGG + chr2.3:54627689-54627708 None:intergenic 50.0%
! GAAGAAGCTGATAGGGCACT+TGG - chr2.3:54627594-54627613 MS.gene52411:CDS 50.0%
! GCTGTTGCTGCTGTGGTTTT+GGG + chr2.3:54626451-54626470 None:intergenic 50.0%
! GGGGTTGAGACAGCGATTTT+AGG + chr2.3:54626431-54626450 None:intergenic 50.0%
! GTCCGGTTTAAGGTTCAACC+AGG + chr2.3:54627111-54627130 None:intergenic 50.0%
! TAGGGCACTTGGATCAATGG+TGG - chr2.3:54627605-54627624 MS.gene52411:intron 50.0%
! TGCTGTTGCTGCTGTGGTTT+TGG + chr2.3:54626452-54626471 None:intergenic 50.0%
! TTTAAGGCGGGTGAACGACT+AGG - chr2.3:54627164-54627183 MS.gene52411:intron 50.0%
!! CTGTTGCTGCTGTGGTTTTG+GGG + chr2.3:54626450-54626469 None:intergenic 50.0%
AAGGCGGGTGAACGACTATG+AGG - chr2.3:54627167-54627186 MS.gene52411:intron 55.0%
CTTGCTGCATCTCTTGCCTC+TGG + chr2.3:54627989-54628008 None:intergenic 55.0%
TGATCAAGCTGTCCGGCTCA+AGG + chr2.3:54627252-54627271 None:intergenic 55.0%
! GGTTGTTGCTGTTGCTGCTG+TGG + chr2.3:54626458-54626477 None:intergenic 55.0%
AAGGCGGGTGAACGACTAGG+AGG - chr2.3:54627429-54627448 MS.gene52411:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 54626365 54628147 54626365 ID=MS.gene52411
chr2.3 mRNA 54626365 54628147 54626365 ID=MS.gene52411.t1;Parent=MS.gene52411
chr2.3 exon 54627929 54628147 54627929 ID=MS.gene52411.t1.exon1;Parent=MS.gene52411.t1
chr2.3 CDS 54627929 54628147 54627929 ID=cds.MS.gene52411.t1;Parent=MS.gene52411.t1
chr2.3 exon 54627727 54627833 54627727 ID=MS.gene52411.t1.exon2;Parent=MS.gene52411.t1
chr2.3 CDS 54627727 54627833 54627727 ID=cds.MS.gene52411.t1;Parent=MS.gene52411.t1
chr2.3 exon 54627470 54627617 54627470 ID=MS.gene52411.t1.exon3;Parent=MS.gene52411.t1
chr2.3 CDS 54627470 54627617 54627470 ID=cds.MS.gene52411.t1;Parent=MS.gene52411.t1
chr2.3 exon 54626772 54626966 54626772 ID=MS.gene52411.t1.exon4;Parent=MS.gene52411.t1
chr2.3 CDS 54626772 54626966 54626772 ID=cds.MS.gene52411.t1;Parent=MS.gene52411.t1
chr2.3 exon 54626365 54626601 54626365 ID=MS.gene52411.t1.exon5;Parent=MS.gene52411.t1
chr2.3 CDS 54626365 54626601 54626365 ID=cds.MS.gene52411.t1;Parent=MS.gene52411.t1
Gene Sequence

>MS.gene52411

ATGGCACTTAGACCTATTGACAATGCTCTTCCAACAATAACCCAAGAAAGACCCAAAAAACAACCTAAAATCGCTGTCTCAACCCCAAAACCACAGCAGCAACAGCAACAACCTCGTACTTCTTCCAATGATGAAAATCAAATCCCATTGGAACCCACCATTGATTATATTTCATCTGACAACCTGAAACCCATGTCAGATCCTGAAGCTCAGATTCAAGTAAGCATAAAAATTCAATCTTTTTTTTTTTTGTTTCAAATGAATTTTTTTACTTGTGATTTGGTATTGAGTTTTTGAAATCTTGAAAATTGCAGAGTTTGATTGAAGATTTGGATTCAAAAAACTGGGTCAAGGTTTGTGAGTCCTTGAACGATGTTAGGCGATTTGCGTTGTTCAATTCGTCTCTTCTATTACCCATTTTGTAAGGATTGATTTTTGTGTGTATATTTTGTTAAAGTTTTGAAATTTTTGTTATGGATTGAATTGGGTTTGGATGAATTTTGTTTCTGATGTGAAGTTTGTATGATTAGGGATAAAATTGTGTTGGTGGTGGTGAAGGCAATGAAGAACCCTCGTAGTGCTTTATGCAAAACCTCTATTATGGCTGCTTCTGATATTTTCAATGCTTTTGGTGATAAATTGTTTGATCCTTCCATTTCTGAGGCATTTGATGGCTTGGTATGTTGAATCAATTTTGCTCTTGTGTGTTCTGTTTAGTGTTTTAAAAATTGAACCGAACTAGACCTGGTTGAACCTTAAACCGGACAGCTCGATCACGATTTTGTCCTGATTTGAGCTGTTTAAGGCGGGTGAACGACTATGAGGTCTCTTTATTTTGCTCGTGCGTTTATTTTAAAAATTGAACCAAATTAGACTTGGTTAAACCTTGAGCCGGACAGCTTGATCACGATTTTGTCCTGATTCGAGCTGTTTAAGGCGGGTGAATGACTATGAGGTCTCGTTATTTTGCTAGTGCGTTTGTTTTAAAAATTGAACCGAATTAGACCTGGTTGAACCTTTAATCGGACAGCTCAATCACGATTTCGTCCTGATTCGAGCTGTTTAAGGCGGGTGAACGACTAGGAGGTCTCATTATTTCGATGTCTGGTTAGGTTTTCAAAATATTAATTCTATTGGTGATTAAAATGTTGAATTGTGTTGTTCTGGTTGAATTTCAACAGCTGTTGCAGCTGCTGCTGAAATCTTCTCAGGATAAAAAGTTTGTGTGTGAAGAAGCTGATAGGGCACTTGGATCAATGGTGGGTTCCATGACACCTCTTCCATTGCTTCAGAAACTAAGGTTATCTGTGAGTCACAAAAACCTTAGGATCAGGGCTAAAGCTGCTGTTTCTCTATCCAAATGTGTCTCCAAAATGGTAAAGTTTGCCACTCCATTTGAATTATGATATGATACATGGTCTAGGTAGAAAGTTTTATACCGTCAACATATCACAACCAATTAATGGTGTATATGAATTAAATCAATTTGTTTTATTGGTGTTTTTGGGTTTATGTATGTTTCTAAAGAGTATTATTATGGCAGCAGGGAATTGAGGAAATGGAGGAGTTTGGGATGGAAAAGTTGATTGAAGTTGCAGCTGATTTAGTGAATGATAGACTCCCAGAGGCAAGAGATGCAGCAAGAAGTATTGCAACTTCAGTGTATGAGGCAATCATTAAGGATGTGGAAGAGGAACAGAAGATGGAAGTGTGGCAGAGTTTCTGCCACTCTAAACTAACACCAATTAATGCTCTTTCAATTTTGAAGATGGTTAAACTTTAG
Protein sequence

>MS.gene52411.t1

MALRPIDNALPTITQERPKKQPKIAVSTPKPQQQQQQPRTSSNDENQIPLEPTIDYISSDNLKPMSDPEAQIQSLIEDLDSKNWVKVCESLNDVRRFALFNSSLLLPILDKIVLVVVKAMKNPRSALCKTSIMAASDIFNAFGDKLFDPSISEAFDGLLLQLLLKSSQDKKFVCEEADRALGSMVGSMTPLPLLQKLRLSVSHKNLRIRAKAAVSLSKCVSKMGIEEMEEFGMEKLIEVAADLVNDRLPEARDAARSIATSVYEAIIKDVEEEQKMEVWQSFCHSKLTPINALSILKMVKL