AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene00304

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00304.t1 MTR_2g436750 96.013 301 5 1 1 301 1 294 0.0 572
MS.gene00304.t1 MTR_6g007663 35.227 352 163 6 5 301 31 372 6.05e-58 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene00304.t1 AT4G15830 56.066 305 116 5 1 299 1 293 3.62e-110 321
MS.gene00304.t1 AT3G01450 40.711 253 140 2 54 301 67 314 3.00e-62 200
MS.gene00304.t1 AT3G01450 40.711 253 140 2 54 301 67 314 3.00e-62 200
MS.gene00304.t1 AT5G14790 39.695 262 139 4 54 301 70 326 3.70e-62 201
MS.gene00304.t1 AT3G18530 48.227 141 68 1 94 234 9 144 5.78e-35 127
MS.gene00304.t1 AT3G18530 49.231 130 61 1 105 234 1 125 3.79e-32 119
MS.gene00304.t1 AT3G18530 50.000 124 57 1 111 234 124 242 1.84e-29 115

Find 62 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGATCTGACATGGGTTTC+AGG 0.101075 2.1:+56499506 None:intergenic
TGCTGTTGCTGCTGTGGTTT+TGG 0.159324 2.1:+56499604 None:intergenic
AGTGCCAAACTTTACCATTT+TGG 0.211534 2.1:+56498321 None:intergenic
TTTGGGTCTTTCTTGGGTTA+TGG 0.250336 2.1:+56499654 None:intergenic
ATTGAGGAAATGGAGGAGTT+TGG 0.270099 2.1:-56498140 MS.gene00304:CDS
GCAGAGTTTAATTGAAGATT+TGG 0.270460 2.1:-56499379 MS.gene00304:intron
AAAATTGAAAGAGCATTAAT+TGG 0.272815 2.1:+56497948 None:intergenic
TCCATTTCTGAGGCATTTGA+TGG 0.287057 2.1:-56499038 MS.gene00304:CDS
TTTATGCAAAACCTCTATTA+TGG 0.287797 2.1:-56499108 MS.gene00304:CDS
CTTGCTGCATCTCTTGCCTC+TGG 0.308740 2.1:+56498068 None:intergenic
TTCTGAGGCATTTGATGGCT+TGG 0.330088 2.1:-56499033 MS.gene00304:intron
ATCCAAATGTGTCTCCAAAA+TGG 0.333713 2.1:-56498335 MS.gene00304:intron
TTGAGGAAATGGAGGAGTTT+GGG 0.339563 2.1:-56498139 MS.gene00304:CDS
CTTACTTGAATCTGAGCTTC+AGG 0.347459 2.1:+56499487 None:intergenic
TTCCATTGCTTCAGAAACTA+AGG 0.397711 2.1:-56498411 MS.gene00304:CDS
GCCATCAAATGCCTCAGAAA+TGG 0.405071 2.1:+56499037 None:intergenic
TGTGGAAGAGGAACAGAAGA+TGG 0.425574 2.1:-56498006 MS.gene00304:CDS
TTGCTGCATCTCTTGCCTCT+GGG 0.433357 2.1:+56498069 None:intergenic
GGTCTTTCTTGGGTTATGGT+TGG 0.436130 2.1:+56499658 None:intergenic
GTGAGTCCTTGAACGATGTT+AGG 0.437164 2.1:-56499332 MS.gene00304:CDS
AAAATCAATCCTTACAAAAT+GGG 0.442598 2.1:+56499276 None:intergenic
CAGCTTTAGCCCTGATCCTA+AGG 0.446309 2.1:+56498368 None:intergenic
TTGTGTGTGAAGAAGCTGAT+AGG 0.451109 2.1:-56498468 MS.gene00304:CDS
GTTGGAAGAGCATTGTCAAT+AGG 0.465838 2.1:+56499676 None:intergenic
TGATAGGGCACTTGGATCAA+TGG 0.469114 2.1:-56498452 MS.gene00304:CDS
AAATCGCCTAACATCGTTCA+AGG 0.470782 2.1:+56499326 None:intergenic
GCAGCAGGGAATTGAGGAAA+TGG 0.471845 2.1:-56498150 MS.gene00304:intron
TAATCAATGGTGGGTTCCAA+TGG 0.479929 2.1:+56499544 None:intergenic
AACCTTAGTTTCTGAAGCAA+TGG 0.485737 2.1:+56498409 None:intergenic
ATTATGGCAGCAGGGAATTG+AGG 0.494357 2.1:-56498156 MS.gene00304:intron
CATTGCAACTTCAGTGTATG+AGG 0.498018 2.1:-56498042 MS.gene00304:CDS
GCTGCTGCTGAAATCTTCTC+AGG 0.502458 2.1:-56498500 MS.gene00304:CDS
AGTGTATGAGGCAATCATTA+AGG 0.512370 2.1:-56498030 MS.gene00304:CDS
GTCAGATGAAATATAATCAA+TGG 0.512715 2.1:+56499531 None:intergenic
GGTTGTTGCTGTTGCTGCTG+TGG 0.527140 2.1:+56499598 None:intergenic
TGAGGCAATCATTAAGGATG+TGG 0.528288 2.1:-56498024 MS.gene00304:CDS
ATCAGAAGCAGCCATAATAG+AGG 0.530469 2.1:+56499097 None:intergenic
AATCATTAAGGATGTGGAAG+AGG 0.535129 2.1:-56498018 MS.gene00304:CDS
TAGGGATAAAATTGTGTTGG+TGG 0.538015 2.1:-56499162 MS.gene00304:CDS
GTTTGATCCTTCCATTTCTG+AGG 0.538757 2.1:-56499048 MS.gene00304:CDS
GGAAATGGAGGAGTTTGGGA+TGG 0.539001 2.1:-56498135 MS.gene00304:CDS
AATCAATGGTGGGTTCCAAT+GGG 0.540052 2.1:+56499545 None:intergenic
GAAGAAGCTGATAGGGCACT+TGG 0.542782 2.1:-56498460 MS.gene00304:CDS
TGATGAAAATCAAATCCCAT+TGG 0.544278 2.1:-56499560 MS.gene00304:CDS
CTGAGCTTCAGGATCTGACA+TGG 0.548880 2.1:+56499498 None:intergenic
AATTGTGTTGGTGGTGGTGA+AGG 0.551275 2.1:-56499153 MS.gene00304:CDS
AGTTTCTGAAGCAATGGAAG+AGG 0.555513 2.1:+56498415 None:intergenic
GGATAAAATTGTGTTGGTGG+TGG 0.561353 2.1:-56499159 MS.gene00304:CDS
AAGCAATGGAAGAGGTGTCA+TGG 0.567617 2.1:+56498423 None:intergenic
AGATGAAATATAATCAATGG+TGG 0.574708 2.1:+56499534 None:intergenic
AGGAACAGAAGATGGAAGTG+TGG 0.576946 2.1:-56497998 MS.gene00304:CDS
GATTAGGGATAAAATTGTGT+TGG 0.587172 2.1:-56499165 MS.gene00304:intron
TAGGGCACTTGGATCAATGG+TGG 0.605281 2.1:-56498449 MS.gene00304:CDS
TAATTGGTGTTAGTTTAGAG+TGG 0.612462 2.1:+56497964 None:intergenic
AGGGCACTTGGATCAATGGT+GGG 0.613700 2.1:-56498448 MS.gene00304:CDS
TGTGTGTGAAGAAGCTGATA+GGG 0.615409 2.1:-56498467 MS.gene00304:CDS
GATGAAATATAATCAATGGT+GGG 0.618538 2.1:+56499535 None:intergenic
TCAAATGCCTCAGAAATGGA+AGG 0.629609 2.1:+56499041 None:intergenic
TGAGCTTCAGGATCTGACAT+GGG 0.635005 2.1:+56499499 None:intergenic
GCAGGGAATTGAGGAAATGG+AGG 0.641748 2.1:-56498147 MS.gene00304:intron
TCATCATTGGAAGAAGTACG+AGG 0.693109 2.1:+56499577 None:intergenic
AGTGAATGATAGACTCCCAG+AGG 0.721160 2.1:-56498084 MS.gene00304:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAAATATTAATTCTAT+TGG - chr2.1:56499042-56499061 MS.gene00304:CDS 10.0%
!!! ATTAAATCAATTTGTTTTAT+TGG - chr2.1:56499403-56499422 MS.gene00304:intron 10.0%
!!! AAGTTTTGAAATTTTTGTTA+TGG - chr2.1:56498382-56498401 MS.gene00304:CDS 15.0%
!! AAAAATCAATCCTTACAAAA+TGG + chr2.1:56498345-56498364 None:intergenic 20.0%
!! AAAATCAATCCTTACAAAAT+GGG + chr2.1:56498344-56498363 None:intergenic 20.0%
!! AATTCATATACACCATTAAT+TGG + chr2.1:56499386-56499405 None:intergenic 20.0%
!!! AAAATTGAAAGAGCATTAAT+TGG + chr2.1:56499672-56499691 None:intergenic 20.0%
!!! ATTTGTTTTATTGGTGTTTT+TGG - chr2.1:56499412-56499431 MS.gene00304:intron 20.0%
!!! ATTTTTGTTATGGATTGAAT+TGG - chr2.1:56498392-56498411 MS.gene00304:CDS 20.0%
!!! GAATTTTTTTACTTGTGATT+TGG - chr2.1:56498188-56498207 MS.gene00304:intron 20.0%
!!! GTTTCTAAAGAGTATTATTA+TGG - chr2.1:56499445-56499464 MS.gene00304:intron 20.0%
!!! TTTGTTTTATTGGTGTTTTT+GGG - chr2.1:56499413-56499432 MS.gene00304:intron 20.0%
!!! TTTTTGTTATGGATTGAATT+GGG - chr2.1:56498393-56498412 MS.gene00304:CDS 20.0%
! AAATTGAACCAAATTAGACT+TGG - chr2.1:56498784-56498803 MS.gene00304:intron 25.0%
! AACATATCACAACCAATTAA+TGG - chr2.1:56499371-56499390 MS.gene00304:CDS 25.0%
! AAGATTTGGATTCAAAAAAC+TGG - chr2.1:56498252-56498271 MS.gene00304:intron 25.0%
! ACTCCATTTGAATTATGATA+TGG - chr2.1:56499316-56499335 MS.gene00304:CDS 25.0%
! AGATGAAATATAATCAATGG+TGG + chr2.1:56498086-56498105 None:intergenic 25.0%
! AGATTTGGATTCAAAAAACT+GGG - chr2.1:56498253-56498272 MS.gene00304:intron 25.0%
! ATGTGAAGTTTGTATGATTA+GGG - chr2.1:56498437-56498456 MS.gene00304:CDS 25.0%
! GATGAAATATAATCAATGGT+GGG + chr2.1:56498085-56498104 None:intergenic 25.0%
! GTACCATATCATAATTCAAA+TGG + chr2.1:56499322-56499341 None:intergenic 25.0%
! GTCAGATGAAATATAATCAA+TGG + chr2.1:56498089-56498108 None:intergenic 25.0%
! TTGAATTATGATATGGTACA+TGG - chr2.1:56499323-56499342 MS.gene00304:CDS 25.0%
! TTTATGCAAAACCTCTATTA+TGG - chr2.1:56498509-56498528 MS.gene00304:CDS 25.0%
!! TCTGATATTTTCAATGCTTT+TGG - chr2.1:56498537-56498556 MS.gene00304:intron 25.0%
AATTGGTTGTGATATGTTGA+CGG + chr2.1:56499369-56499388 None:intergenic 30.0%
AGGTTTAACCAAGTCTAATT+TGG + chr2.1:56498795-56498814 None:intergenic 30.0%
GATGTGAAGTTTGTATGATT+AGG - chr2.1:56498436-56498455 MS.gene00304:CDS 30.0%
GATTAGGGATAAAATTGTGT+TGG - chr2.1:56498452-56498471 MS.gene00304:CDS 30.0%
GCAGAGTTTAATTGAAGATT+TGG - chr2.1:56498238-56498257 MS.gene00304:intron 30.0%
TGATGAAAATCAAATCCCAT+TGG - chr2.1:56498057-56498076 MS.gene00304:CDS 30.0%
! AATGTTGAATTGTGTTGTTC+TGG - chr2.1:56499072-56499091 MS.gene00304:CDS 30.0%
! CTTCTATTACCCATTTTGTA+AGG - chr2.1:56498332-56498351 MS.gene00304:intron 30.0%
!! TAATTGGTGTTAGTTTAGAG+TGG + chr2.1:56499656-56499675 None:intergenic 30.0%
!! TGGGATTTGATTTTCATCAT+TGG + chr2.1:56498056-56498075 None:intergenic 30.0%
!!! AGCGATTTTAGGTTGTTTTT+TGG + chr2.1:56497984-56498003 None:intergenic 30.0%
!!! GCGATTTTAGGTTGTTTTTT+GGG + chr2.1:56497983-56498002 None:intergenic 30.0%
!!! TTGTTTTTTGGGTCTTTCTT+GGG + chr2.1:56497972-56497991 None:intergenic 30.0%
AAAATCATGATCAAGCTGTC+CGG + chr2.1:56498822-56498841 None:intergenic 35.0%
AAATTGAACCGAATTAGACC+TGG - chr2.1:56498915-56498934 MS.gene00304:intron 35.0%
AATCATTAAGGATGTGGAAG+AGG - chr2.1:56499599-56499618 MS.gene00304:CDS 35.0%
AGTGTATGAGGCAATCATTA+AGG - chr2.1:56499587-56499606 MS.gene00304:CDS 35.0%
ATCCAAATGTGTCTCCAAAA+TGG - chr2.1:56499282-56499301 MS.gene00304:intron 35.0%
CATTATTTCGATGTCTGGTT+AGG - chr2.1:56499018-56499037 MS.gene00304:intron 35.0%
GTCTCCAAAATGGTAAAGTT+TGG - chr2.1:56499292-56499311 MS.gene00304:CDS 35.0%
TAGGGATAAAATTGTGTTGG+TGG - chr2.1:56498455-56498474 MS.gene00304:CDS 35.0%
TATGATATGGTACATGGTCT+AGG - chr2.1:56499329-56499348 MS.gene00304:CDS 35.0%
TCACAAAAACCTTAGGATCA+GGG - chr2.1:56499240-56499259 MS.gene00304:intron 35.0%
TTCCATTGCTTCAGAAACTA+AGG - chr2.1:56499206-56499225 MS.gene00304:intron 35.0%
! AGAGTATTATTATGGCAGCA+GGG - chr2.1:56499453-56499472 MS.gene00304:intron 35.0%
! AGTGCCAAACTTTACCATTT+TGG + chr2.1:56499299-56499318 None:intergenic 35.0%
! GTTATGGATTGAATTGGGTT+TGG - chr2.1:56498398-56498417 MS.gene00304:CDS 35.0%
!! AACCTTAGTTTCTGAAGCAA+TGG + chr2.1:56499211-56499230 None:intergenic 35.0%
!! AAGAGTATTATTATGGCAGC+AGG - chr2.1:56499452-56499471 MS.gene00304:intron 35.0%
!! TACCATTTTGGAGACACATT+TGG + chr2.1:56499287-56499306 None:intergenic 35.0%
!! TTTTGCATAAAGCACTACGA+GGG + chr2.1:56498500-56498519 None:intergenic 35.0%
!!! GTTGTTTTTTGGGTCTTTCT+TGG + chr2.1:56497973-56497992 None:intergenic 35.0%
AAATCGCCTAACATCGTTCA+AGG + chr2.1:56498294-56498313 None:intergenic 40.0%
AAATTGAACCGAACTAGACC+TGG - chr2.1:56498653-56498672 MS.gene00304:intron 40.0%
AGGTTCAACCAGGTCTAATT+CGG + chr2.1:56498926-56498945 None:intergenic 40.0%
ATCAGAAGCAGCCATAATAG+AGG + chr2.1:56498523-56498542 None:intergenic 40.0%
ATTGAGGAAATGGAGGAGTT+TGG - chr2.1:56499477-56499496 MS.gene00304:intron 40.0%
CATTGCAACTTCAGTGTATG+AGG - chr2.1:56499575-56499594 MS.gene00304:CDS 40.0%
CTGTGAGTCACAAAAACCTT+AGG - chr2.1:56499233-56499252 MS.gene00304:intron 40.0%
CTTACTTGAATCTGAGCTTC+AGG + chr2.1:56498133-56498152 None:intergenic 40.0%
GACCTGGTTGAACCTTTAAT+CGG - chr2.1:56498931-56498950 MS.gene00304:intron 40.0%
GGATTCAAAAAACTGGGTCA+AGG - chr2.1:56498259-56498278 MS.gene00304:intron 40.0%
GGTCTCATTATTTCGATGTC+TGG - chr2.1:56499013-56499032 MS.gene00304:intron 40.0%
GTCACAAAAACCTTAGGATC+AGG - chr2.1:56499239-56499258 MS.gene00304:intron 40.0%
GTTTGATCCTTCCATTTCTG+AGG - chr2.1:56498569-56498588 MS.gene00304:intron 40.0%
TCAAATGCCTCAGAAATGGA+AGG + chr2.1:56498579-56498598 None:intergenic 40.0%
TGAGGCAATCATTAAGGATG+TGG - chr2.1:56499593-56499612 MS.gene00304:CDS 40.0%
TGATTGAGCTGTCCGATTAA+AGG + chr2.1:56498946-56498965 None:intergenic 40.0%
TGTGTGTGAAGAAGCTGATA+GGG - chr2.1:56499150-56499169 MS.gene00304:CDS 40.0%
TTGAGGAAATGGAGGAGTTT+GGG - chr2.1:56499478-56499497 MS.gene00304:intron 40.0%
TTGTGTGTGAAGAAGCTGAT+AGG - chr2.1:56499149-56499168 MS.gene00304:CDS 40.0%
TTTGGGTCTTTCTTGGGTTA+TGG + chr2.1:56497966-56497985 None:intergenic 40.0%
! CTGATTTGAGCTGTTTAAGG+CGG - chr2.1:56498714-56498733 MS.gene00304:intron 40.0%
! GGATAAAATTGTGTTGGTGG+TGG - chr2.1:56498458-56498477 MS.gene00304:CDS 40.0%
! GTCCTGATTTGAGCTGTTTA+AGG - chr2.1:56498711-56498730 MS.gene00304:intron 40.0%
! TCATCATTGGAAGAAGTACG+AGG + chr2.1:56498043-56498062 None:intergenic 40.0%
! TGATTTGAGCTGTTTAAGGC+GGG - chr2.1:56498715-56498734 MS.gene00304:intron 40.0%
!! AATCAATGGTGGGTTCCAAT+GGG + chr2.1:56498075-56498094 None:intergenic 40.0%
!! AGTTTCTGAAGCAATGGAAG+AGG + chr2.1:56499205-56499224 None:intergenic 40.0%
!! GTTGGAAGAGCATTGTCAAT+AGG + chr2.1:56497944-56497963 None:intergenic 40.0%
!! GTTTTGCATAAAGCACTACG+AGG + chr2.1:56498501-56498520 None:intergenic 40.0%
!! TAATCAATGGTGGGTTCCAA+TGG + chr2.1:56498076-56498095 None:intergenic 40.0%
!! TCCATTTCTGAGGCATTTGA+TGG - chr2.1:56498579-56498598 MS.gene00304:intron 40.0%
AAAATCGTGATCGAGCTGTC+CGG + chr2.1:56498691-56498710 None:intergenic 45.0%
AGGAACAGAAGATGGAAGTG+TGG - chr2.1:56499619-56499638 MS.gene00304:CDS 45.0%
AGGTTCAACCAGGTCTAGTT+CGG + chr2.1:56498664-56498683 None:intergenic 45.0%
AGTGAATGATAGACTCCCAG+AGG - chr2.1:56499533-56499552 MS.gene00304:CDS 45.0%
ATTATGGCAGCAGGGAATTG+AGG - chr2.1:56499461-56499480 MS.gene00304:intron 45.0%
CGCCTTAAACAGCTCAAATC+AGG + chr2.1:56498716-56498735 None:intergenic 45.0%
GCCATCAAATGCCTCAGAAA+TGG + chr2.1:56498583-56498602 None:intergenic 45.0%
GGTCTTTCTTGGGTTATGGT+TGG + chr2.1:56497962-56497981 None:intergenic 45.0%
GTCCGATTAAAGGTTCAACC+AGG + chr2.1:56498936-56498955 None:intergenic 45.0%
GTGAGTCCTTGAACGATGTT+AGG - chr2.1:56498285-56498304 MS.gene00304:intron 45.0%
TGAGCTTCAGGATCTGACAT+GGG + chr2.1:56498121-56498140 None:intergenic 45.0%
TGTGGAAGAGGAACAGAAGA+TGG - chr2.1:56499611-56499630 MS.gene00304:CDS 45.0%
! CTGATTCGAGCTGTTTAAGG+CGG - chr2.1:56498845-56498864 MS.gene00304:intron 45.0%
! GACTTGGTTAAACCTTGAGC+CGG - chr2.1:56498800-56498819 MS.gene00304:intron 45.0%
! GTCCTGATTCGAGCTGTTTA+AGG - chr2.1:56498842-56498861 MS.gene00304:intron 45.0%
! TGATAGGGCACTTGGATCAA+TGG - chr2.1:56499165-56499184 MS.gene00304:intron 45.0%
! TGATTCGAGCTGTTTAAGGC+GGG - chr2.1:56498846-56498865 MS.gene00304:intron 45.0%
!! AAGCAATGGAAGAGGTGTCA+TGG + chr2.1:56499197-56499216 None:intergenic 45.0%
!! AATTGTGTTGGTGGTGGTGA+AGG - chr2.1:56498464-56498483 MS.gene00304:CDS 45.0%
!! TTCTGAGGCATTTGATGGCT+TGG - chr2.1:56498584-56498603 MS.gene00304:intron 45.0%
AAGGCGGGTGAATGACTATG+AGG - chr2.1:56498861-56498880 MS.gene00304:intron 50.0%
CAGGATCTGACATGGGTTTC+AGG + chr2.1:56498114-56498133 None:intergenic 50.0%
CGCCTTAAACAGCTCGAATC+AGG + chr2.1:56498847-56498866 None:intergenic 50.0%
CTGAGCTTCAGGATCTGACA+TGG + chr2.1:56498122-56498141 None:intergenic 50.0%
GACCTGGTTGAACCTTGAAC+CGG - chr2.1:56498669-56498688 MS.gene00304:intron 50.0%
GCAGCAGGGAATTGAGGAAA+TGG - chr2.1:56499467-56499486 MS.gene00304:intron 50.0%
GCAGGGAATTGAGGAAATGG+AGG - chr2.1:56499470-56499489 MS.gene00304:intron 50.0%
GCTGCTGCTGAAATCTTCTC+AGG - chr2.1:56499117-56499136 MS.gene00304:CDS 50.0%
GGAAATGGAGGAGTTTGGGA+TGG - chr2.1:56499482-56499501 MS.gene00304:intron 50.0%
TTGCTGCATCTCTTGCCTCT+GGG + chr2.1:56499551-56499570 None:intergenic 50.0%
! AGGGCACTTGGATCAATGGT+GGG - chr2.1:56499169-56499188 MS.gene00304:intron 50.0%
! CAGCTTTAGCCCTGATCCTA+AGG + chr2.1:56499252-56499271 None:intergenic 50.0%
! GAAGAAGCTGATAGGGCACT+TGG - chr2.1:56499157-56499176 MS.gene00304:CDS 50.0%
! GCTGTTGCTGCTGTGGTTTT+GGG + chr2.1:56498015-56498034 None:intergenic 50.0%
! GGGGTTGAGACAGCGATTTT+AGG + chr2.1:56497995-56498014 None:intergenic 50.0%
! TAGGGCACTTGGATCAATGG+TGG - chr2.1:56499168-56499187 MS.gene00304:intron 50.0%
! TGCTGTTGCTGCTGTGGTTT+TGG + chr2.1:56498016-56498035 None:intergenic 50.0%
! TTTAAGGCGGGTGAACGACT+AGG - chr2.1:56498727-56498746 MS.gene00304:intron 50.0%
!! CTGTTGCTGCTGTGGTTTTG+GGG + chr2.1:56498014-56498033 None:intergenic 50.0%
AAGGCGGGTGAACGACTATG+AGG - chr2.1:56498730-56498749 MS.gene00304:intron 55.0%
CTTGCTGCATCTCTTGCCTC+TGG + chr2.1:56499552-56499571 None:intergenic 55.0%
GTCCGGTTCAAGGTTCAACC+AGG + chr2.1:56498674-56498693 None:intergenic 55.0%
TGATCAAGCTGTCCGGCTCA+AGG + chr2.1:56498815-56498834 None:intergenic 55.0%
TGATCGAGCTGTCCGGTTCA+AGG + chr2.1:56498684-56498703 None:intergenic 55.0%
! GGTTGTTGCTGTTGCTGCTG+TGG + chr2.1:56498022-56498041 None:intergenic 55.0%
AAGGCGGGTGAACGACTAGG+AGG - chr2.1:56498992-56499011 MS.gene00304:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 56497929 56499710 56497929 ID=MS.gene00304
chr2.1 mRNA 56497929 56499710 56497929 ID=MS.gene00304.t1;Parent=MS.gene00304
chr2.1 exon 56499492 56499710 56499492 ID=MS.gene00304.t1.exon1;Parent=MS.gene00304.t1
chr2.1 CDS 56499492 56499710 56499492 ID=cds.MS.gene00304.t1;Parent=MS.gene00304.t1
chr2.1 exon 56499291 56499397 56499291 ID=MS.gene00304.t1.exon2;Parent=MS.gene00304.t1
chr2.1 CDS 56499291 56499397 56499291 ID=cds.MS.gene00304.t1;Parent=MS.gene00304.t1
chr2.1 exon 56499034 56499181 56499034 ID=MS.gene00304.t1.exon3;Parent=MS.gene00304.t1
chr2.1 CDS 56499034 56499181 56499034 ID=cds.MS.gene00304.t1;Parent=MS.gene00304.t1
chr2.1 exon 56498336 56498530 56498336 ID=MS.gene00304.t1.exon4;Parent=MS.gene00304.t1
chr2.1 CDS 56498336 56498530 56498336 ID=cds.MS.gene00304.t1;Parent=MS.gene00304.t1
chr2.1 exon 56497929 56498165 56497929 ID=MS.gene00304.t1.exon5;Parent=MS.gene00304.t1
chr2.1 CDS 56497929 56498165 56497929 ID=cds.MS.gene00304.t1;Parent=MS.gene00304.t1
Gene Sequence

>MS.gene00304

ATGGCACTTAGACCTATTGACAATGCTCTTCCAACCATAACCCAAGAAAGACCCAAAAAACAACCTAAAATCGCTGTCTCAACCCCAAAACCACAGCAGCAACAGCAACAACCTCGTACTTCTTCCAATGATGAAAATCAAATCCCATTGGAACCCACCATTGATTATATTTCATCTGACAACCTGAAACCCATGTCAGATCCTGAAGCTCAGATTCAAGTAAGCATAAAAATTCAATCTTTTTTTTTTTGTTTCAAATGAATTTTTTTACTTGTGATTTGGTATTGAGTTTTTGAAATCTTGAAAATTGCAGAGTTTAATTGAAGATTTGGATTCAAAAAACTGGGTCAAGGTTTGTGAGTCCTTGAACGATGTTAGGCGATTTGCGTTGTTCAATTCGTCTCTTCTATTACCCATTTTGTAAGGATTGATTTTTGTGTGTATATTTTGTTAAAGTTTTGAAATTTTTGTTATGGATTGAATTGGGTTTGGATGAATTTTGTTTCTGATGTGAAGTTTGTATGATTAGGGATAAAATTGTGTTGGTGGTGGTGAAGGCAATGAAGAACCCTCGTAGTGCTTTATGCAAAACCTCTATTATGGCTGCTTCTGATATTTTCAATGCTTTTGGTGATAAATTGTTTGATCCTTCCATTTCTGAGGCATTTGATGGCTTGGTATGTTGAATCAATTTTGCTCTTGTGTGTTCTGTTTAGTGTTTTAAAAATTGAACCGAACTAGACCTGGTTGAACCTTGAACCGGACAGCTCGATCACGATTTTGTCCTGATTTGAGCTGTTTAAGGCGGGTGAACGACTATGAGGTCTCTTTATTTTGCTCGTGCGTTTATTTTAAAAATTGAACCAAATTAGACTTGGTTAAACCTTGAGCCGGACAGCTTGATCATGATTTTGTCCTGATTCGAGCTGTTTAAGGCGGGTGAATGACTATGAGGTCTCGTTATTTTGCTAGTGCGTTTGTTTTAAAAATTGAACCGAATTAGACCTGGTTGAACCTTTAATCGGACAGCTCAATCACGATTTCGTCCTGATTCGAGCTGTTTAAGGCGGGTGAACGACTAGGAGGTCTCATTATTTCGATGTCTGGTTAGGTTTTCAAAATATTAATTCTATTGGTGATTAAAATGTTGAATTGTGTTGTTCTGGTTGAATTTCAACAGCTGTTGCAGCTGCTGCTGAAATCTTCTCAGGATAAAAAGTTTGTGTGTGAAGAAGCTGATAGGGCACTTGGATCAATGGTGGGTTCCATGACACCTCTTCCATTGCTTCAGAAACTAAGGTTATCTGTGAGTCACAAAAACCTTAGGATCAGGGCTAAAGCTGCTGTTTCTCTATCCAAATGTGTCTCCAAAATGGTAAAGTTTGGCACTCCATTTGAATTATGATATGGTACATGGTCTAGGTAGAAAGTTTTATACCGTCAACATATCACAACCAATTAATGGTGTATATGAATTAAATCAATTTGTTTTATTGGTGTTTTTGGGTTTATGTATGTTTCTAAAGAGTATTATTATGGCAGCAGGGAATTGAGGAAATGGAGGAGTTTGGGATGGAAAAGTTGATTGAAGTTGCAGCTGATTTAGTGAATGATAGACTCCCAGAGGCAAGAGATGCAGCAAGAAGCATTGCAACTTCAGTGTATGAGGCAATCATTAAGGATGTGGAAGAGGAACAGAAGATGGAAGTGTGGCAGAGTTTCTGCCACTCTAAACTAACACCAATTAATGCTCTTTCAATTTTGAAGATAGTTAAACTTTAG
Protein sequence

>MS.gene00304.t1

MALRPIDNALPTITQERPKKQPKIAVSTPKPQQQQQQPRTSSNDENQIPLEPTIDYISSDNLKPMSDPEAQIQSLIEDLDSKNWVKVCESLNDVRRFALFNSSLLLPILDKIVLVVVKAMKNPRSALCKTSIMAASDIFNAFGDKLFDPSISEAFDGLLLQLLLKSSQDKKFVCEEADRALGSMVGSMTPLPLLQKLRLSVSHKNLRIRAKAAVSLSKCVSKMGIEEMEEFGMEKLIEVAADLVNDRLPEARDAARSIATSVYEAIIKDVEEEQKMEVWQSFCHSKLTPINALSILKIVKL