Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02707.t1 | XP_024634816.1 | 87.6 | 339 | 23 | 1 | 1 | 320 | 204 | 542 | 9.80E-163 | 582.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02707.t1 | Q9LVC3 | 33.8 | 314 | 204 | 3 | 8 | 320 | 277 | 587 | 2.6e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02707.t1 | A0A072V180 | 85.3 | 320 | 47 | 0 | 1 | 320 | 204 | 523 | 1.5e-133 | 485.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88489 | MS.gene02707 | PPI |
| MS.gene02707 | MS.gene056242 | PPI |
| MS.gene60129 | MS.gene02707 | PPI |
| MS.gene016597 | MS.gene02707 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02707.t1 | MTR_3g102650 | 99.062 | 320 | 3 | 0 | 1 | 320 | 204 | 523 | 0.0 | 658 |
| MS.gene02707.t1 | MTR_2g008770 | 38.019 | 313 | 192 | 1 | 8 | 320 | 426 | 736 | 9.37e-67 | 223 |
| MS.gene02707.t1 | MTR_5g063650 | 36.102 | 313 | 196 | 3 | 8 | 320 | 395 | 703 | 6.31e-59 | 201 |
| MS.gene02707.t1 | MTR_2g006930 | 30.599 | 317 | 210 | 5 | 9 | 319 | 105 | 417 | 1.22e-44 | 157 |
| MS.gene02707.t1 | MTR_1g106975 | 29.595 | 321 | 220 | 2 | 4 | 320 | 127 | 445 | 2.70e-44 | 157 |
| MS.gene02707.t1 | MTR_1g100230 | 28.889 | 315 | 217 | 4 | 10 | 320 | 91 | 402 | 5.09e-41 | 147 |
| MS.gene02707.t1 | MTR_1g051630 | 98.438 | 64 | 1 | 0 | 88 | 151 | 38 | 101 | 2.33e-39 | 134 |
| MS.gene02707.t1 | MTR_5g062070 | 29.644 | 253 | 177 | 1 | 42 | 294 | 22 | 273 | 1.98e-36 | 134 |
| MS.gene02707.t1 | MTR_2g006940 | 26.978 | 278 | 189 | 3 | 9 | 283 | 112 | 378 | 1.77e-31 | 121 |
| MS.gene02707.t1 | MTR_2g036900 | 27.044 | 318 | 213 | 7 | 11 | 319 | 659 | 966 | 4.73e-29 | 117 |
| MS.gene02707.t1 | MTR_1g094630 | 28.369 | 282 | 191 | 5 | 13 | 288 | 647 | 923 | 1.23e-28 | 116 |
| MS.gene02707.t1 | MTR_2g036900 | 28.794 | 257 | 178 | 3 | 11 | 266 | 659 | 911 | 1.24e-26 | 110 |
| MS.gene02707.t1 | MTR_4g064670 | 26.829 | 287 | 199 | 5 | 8 | 288 | 619 | 900 | 2.61e-25 | 107 |
| MS.gene02707.t1 | MTR_4g064670 | 26.829 | 287 | 199 | 5 | 8 | 288 | 690 | 971 | 4.49e-25 | 106 |
| MS.gene02707.t1 | MTR_2g097670 | 26.132 | 287 | 201 | 5 | 8 | 288 | 712 | 993 | 5.31e-23 | 100 |
| MS.gene02707.t1 | MTR_5g080390 | 25.087 | 287 | 204 | 5 | 8 | 288 | 672 | 953 | 2.53e-22 | 98.2 |
| MS.gene02707.t1 | MTR_1g094630 | 28.000 | 200 | 139 | 3 | 13 | 211 | 647 | 842 | 7.64e-18 | 84.7 |
| MS.gene02707.t1 | MTR_2g097670 | 25.366 | 205 | 148 | 3 | 8 | 211 | 712 | 912 | 3.09e-14 | 73.9 |
| MS.gene02707.t1 | MTR_2g055280 | 69.388 | 49 | 15 | 0 | 73 | 121 | 31 | 79 | 1.84e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02707.t1 | AT5G56510 | 36.943 | 314 | 194 | 3 | 8 | 320 | 277 | 587 | 2.75e-63 | 211 |
| MS.gene02707.t1 | AT5G56510 | 36.943 | 314 | 194 | 3 | 8 | 320 | 277 | 587 | 2.75e-63 | 211 |
| MS.gene02707.t1 | AT5G56510 | 36.943 | 314 | 194 | 3 | 8 | 320 | 277 | 587 | 2.75e-63 | 211 |
| MS.gene02707.t1 | AT5G56510 | 36.943 | 314 | 194 | 3 | 8 | 320 | 277 | 587 | 2.75e-63 | 211 |
| MS.gene02707.t1 | AT5G56510 | 36.943 | 314 | 194 | 3 | 8 | 320 | 277 | 587 | 2.75e-63 | 211 |
| MS.gene02707.t1 | AT1G22240 | 36.422 | 313 | 195 | 3 | 8 | 320 | 198 | 506 | 2.10e-62 | 206 |
| MS.gene02707.t1 | AT4G08840 | 39.322 | 295 | 174 | 3 | 11 | 305 | 244 | 533 | 1.27e-60 | 202 |
| MS.gene02707.t1 | AT5G56510 | 37.762 | 286 | 176 | 2 | 8 | 292 | 277 | 561 | 6.37e-60 | 201 |
| MS.gene02707.t1 | AT1G78160 | 35.144 | 313 | 199 | 3 | 8 | 320 | 335 | 643 | 9.32e-58 | 197 |
| MS.gene02707.t1 | AT1G78160 | 35.144 | 313 | 199 | 3 | 8 | 320 | 333 | 641 | 1.05e-57 | 197 |
| MS.gene02707.t1 | AT1G35730 | 35.540 | 287 | 182 | 2 | 8 | 294 | 249 | 532 | 5.67e-53 | 182 |
| MS.gene02707.t1 | AT1G35730 | 35.540 | 287 | 182 | 2 | 8 | 294 | 255 | 538 | 6.32e-53 | 182 |
| MS.gene02707.t1 | AT4G08560 | 36.458 | 288 | 170 | 3 | 10 | 287 | 152 | 436 | 3.85e-51 | 176 |
| MS.gene02707.t1 | AT5G43090 | 33.228 | 316 | 201 | 5 | 10 | 320 | 210 | 520 | 1.72e-49 | 172 |
| MS.gene02707.t1 | AT1G35750 | 33.546 | 313 | 202 | 4 | 8 | 320 | 213 | 519 | 2.56e-46 | 164 |
| MS.gene02707.t1 | AT5G43110 | 32.812 | 320 | 204 | 6 | 6 | 320 | 198 | 511 | 2.20e-41 | 150 |
| MS.gene02707.t1 | AT3G10360 | 29.268 | 287 | 192 | 5 | 8 | 288 | 664 | 945 | 1.63e-29 | 119 |
| MS.gene02707.t1 | AT4G25880 | 28.235 | 340 | 206 | 10 | 6 | 313 | 528 | 861 | 3.33e-29 | 118 |
| MS.gene02707.t1 | AT4G25880 | 28.235 | 340 | 206 | 10 | 6 | 313 | 528 | 861 | 3.33e-29 | 118 |
| MS.gene02707.t1 | AT4G25880 | 30.208 | 288 | 186 | 8 | 6 | 284 | 528 | 809 | 9.43e-29 | 117 |
| MS.gene02707.t1 | AT3G20250 | 27.389 | 314 | 217 | 5 | 11 | 319 | 583 | 890 | 8.13e-27 | 111 |
| MS.gene02707.t1 | AT3G20250 | 33.099 | 142 | 93 | 1 | 154 | 295 | 578 | 717 | 2.88e-11 | 65.1 |
| MS.gene02707.t1 | AT3G20250 | 23.077 | 286 | 181 | 5 | 3 | 249 | 611 | 896 | 4.17e-11 | 64.3 |
| MS.gene02707.t1 | AT3G20250 | 27.389 | 314 | 217 | 5 | 11 | 319 | 619 | 926 | 1.17e-26 | 110 |
| MS.gene02707.t1 | AT3G20250 | 33.099 | 142 | 93 | 1 | 154 | 295 | 614 | 753 | 3.68e-11 | 64.7 |
| MS.gene02707.t1 | AT3G20250 | 23.077 | 286 | 181 | 5 | 3 | 249 | 647 | 932 | 5.89e-11 | 63.9 |
| MS.gene02707.t1 | AT3G20250 | 27.389 | 314 | 217 | 5 | 11 | 319 | 619 | 926 | 1.17e-26 | 110 |
| MS.gene02707.t1 | AT3G20250 | 33.099 | 142 | 93 | 1 | 154 | 295 | 614 | 753 | 3.68e-11 | 64.7 |
| MS.gene02707.t1 | AT3G20250 | 23.077 | 286 | 181 | 5 | 3 | 249 | 647 | 932 | 5.89e-11 | 63.9 |
| MS.gene02707.t1 | AT4G25880 | 28.024 | 339 | 202 | 11 | 10 | 313 | 524 | 855 | 6.13e-26 | 108 |
| MS.gene02707.t1 | AT4G25880 | 29.965 | 287 | 182 | 9 | 10 | 284 | 524 | 803 | 1.29e-25 | 107 |
| MS.gene02707.t1 | AT2G29190 | 27.178 | 287 | 198 | 5 | 8 | 288 | 634 | 915 | 4.09e-24 | 103 |
| MS.gene02707.t1 | AT2G29190 | 27.178 | 287 | 198 | 5 | 8 | 288 | 634 | 915 | 4.09e-24 | 103 |
| MS.gene02707.t1 | AT2G29200 | 25.225 | 333 | 216 | 6 | 8 | 312 | 630 | 957 | 1.41e-23 | 102 |
| MS.gene02707.t1 | AT2G29200 | 25.225 | 333 | 216 | 6 | 8 | 312 | 630 | 957 | 1.41e-23 | 102 |
| MS.gene02707.t1 | AT2G29140 | 25.784 | 287 | 202 | 5 | 8 | 288 | 626 | 907 | 1.53e-21 | 95.9 |
| MS.gene02707.t1 | AT2G29140 | 25.784 | 287 | 202 | 5 | 8 | 288 | 626 | 907 | 1.53e-21 | 95.9 |
| MS.gene02707.t1 | AT5G60180 | 25.714 | 245 | 179 | 2 | 52 | 295 | 48 | 290 | 4.98e-15 | 75.1 |
| MS.gene02707.t1 | AT5G09610 | 25.339 | 221 | 157 | 4 | 88 | 306 | 263 | 477 | 6.24e-15 | 75.9 |
| MS.gene02707.t1 | AT5G60110 | 25.714 | 245 | 179 | 2 | 52 | 295 | 48 | 290 | 1.73e-14 | 73.6 |
| MS.gene02707.t1 | AT5G59280 | 26.068 | 234 | 167 | 4 | 58 | 288 | 57 | 287 | 2.48e-14 | 73.2 |
| MS.gene02707.t1 | AT1G35850 | 27.830 | 212 | 147 | 4 | 80 | 288 | 4 | 212 | 4.10e-14 | 71.6 |
| MS.gene02707.t1 | AT1G21620 | 26.201 | 229 | 134 | 5 | 64 | 289 | 70 | 266 | 8.75e-14 | 71.2 |
| MS.gene02707.t1 | AT1G35850 | 30.968 | 155 | 103 | 3 | 137 | 288 | 106 | 259 | 5.34e-12 | 65.9 |
Find 70 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTGCATTGAATAAATTTA+AGG | 0.145874 | 3.4:+90386241 | MS.gene02707:CDS |
| GCAAGAAGTGATGGCAAATT+TGG | 0.156557 | 3.4:+90384683 | MS.gene02707:CDS |
| CAAGAAGTGATGGCAAATTT+GGG | 0.276799 | 3.4:+90384684 | MS.gene02707:CDS |
| TAGCAATATGTTTGGCAAAA+AGG | 0.298521 | 3.4:+90386847 | MS.gene02707:CDS |
| TCTCTTTCCTGCAATAAATA+TGG | 0.314796 | 3.4:+90386089 | MS.gene02707:CDS |
| ATTACTGCCATATTTATTGC+AGG | 0.345089 | 3.4:-90386096 | None:intergenic |
| AGGCTCCTTACGGATCCTTA+TGG | 0.349807 | 3.4:+90386203 | MS.gene02707:CDS |
| GTAAGGAGCCTTGTTACATT+AGG | 0.367914 | 3.4:-90386191 | None:intergenic |
| TGGAGCTATTGTATTGTCTA+AGG | 0.373255 | 3.4:+90385087 | MS.gene02707:CDS |
| AGAATTTGCCTTAGTCTTCA+TGG | 0.374945 | 3.4:+90384873 | MS.gene02707:CDS |
| GTATTGTCTAAGGATATTAA+TGG | 0.390496 | 3.4:+90385097 | MS.gene02707:CDS |
| TAATCACATGTGTGAGTTGA+TGG | 0.391134 | 3.4:+90384743 | MS.gene02707:CDS |
| TAAGAATGCCTTGGAGGAAC+TGG | 0.415665 | 3.4:+90386799 | MS.gene02707:CDS |
| AATTAGACCTCTTTGCTCTC+TGG | 0.422483 | 3.4:-90385047 | None:intergenic |
| TATTAGCTGAAGATTGTTAC+GGG | 0.425499 | 3.4:+90385891 | MS.gene02707:CDS |
| GGTTGATCCTATTGGTTATG+AGG | 0.433190 | 3.4:+90384764 | MS.gene02707:CDS |
| CTATTAGCTGAAGATTGTTA+CGG | 0.439528 | 3.4:+90385890 | MS.gene02707:CDS |
| CTGAAAATACCAACAGTCTC+AGG | 0.440858 | 3.4:+90386032 | MS.gene02707:CDS |
| GTAATAACCTCATAACCAAT+AGG | 0.443299 | 3.4:-90384771 | None:intergenic |
| TAGCAATTCTATAATGATGC+AGG | 0.476010 | 3.4:-90386162 | None:intergenic |
| ATTATGTCAGCTTTGACCCC+TGG | 0.477722 | 3.4:+90385067 | MS.gene02707:CDS |
| TGGCAAATTTGGGGCCTGAA+GGG | 0.481344 | 3.4:+90384694 | MS.gene02707:CDS |
| ATGATGCGTAGCAATATGTT+TGG | 0.481616 | 3.4:+90386839 | MS.gene02707:CDS |
| AAAGACTCAGATTGTTCTGT+TGG | 0.482072 | 3.4:+90384824 | MS.gene02707:CDS |
| TTATGAGGTTATTACAAAGA+TGG | 0.482412 | 3.4:+90384779 | MS.gene02707:CDS |
| TAACAATCTTCAGCTAATAG+TGG | 0.485810 | 3.4:-90385887 | None:intergenic |
| GAATTTGCCTTAGTCTTCAT+GGG | 0.497383 | 3.4:+90384874 | MS.gene02707:CDS |
| TTAGACAATACAATAGCTCC+AGG | 0.504045 | 3.4:-90385085 | None:intergenic |
| GGCAAATTTGGGGCCTGAAG+GGG | 0.504390 | 3.4:+90384695 | MS.gene02707:CDS |
| TAATGTAACAAGGCTCCTTA+CGG | 0.508224 | 3.4:+90386193 | MS.gene02707:CDS |
| ATTCATTAAGAATGCCTTGG+AGG | 0.509107 | 3.4:+90386793 | MS.gene02707:CDS |
| CATTGGTTTGATGAATTTCG+TGG | 0.510977 | 3.4:+90384615 | MS.gene02707:CDS |
| ATACAAATTGCTGCTGAAGC+TGG | 0.513224 | 3.4:-90386067 | None:intergenic |
| TCGTGGGAGGGTTTATTCGT+TGG | 0.516213 | 3.4:+90384632 | MS.gene02707:CDS |
| AAATATACCCATGAAGACTA+AGG | 0.517695 | 3.4:-90384881 | None:intergenic |
| GCTGCTGAAGCTGGTGGTGT+AGG | 0.519438 | 3.4:-90386058 | None:intergenic |
| ATGGCAAATTTGGGGCCTGA+AGG | 0.531879 | 3.4:+90384693 | MS.gene02707:CDS |
| GTTTGATGAATTTCGTGGGA+GGG | 0.531922 | 3.4:+90384620 | MS.gene02707:CDS |
| GAGTTGATGGTTGATCCTAT+TGG | 0.533865 | 3.4:+90384756 | MS.gene02707:CDS |
| CTGATGACAAAATTTCCATA+AGG | 0.535242 | 3.4:-90386218 | None:intergenic |
| TCACTTTCAAGAGATAAGAC+TGG | 0.535453 | 3.4:+90385782 | MS.gene02707:CDS |
| TAGATTCATTAAGAATGCCT+TGG | 0.547602 | 3.4:+90386790 | MS.gene02707:CDS |
| TCGTTCTGTTGAGAAACTGT+TGG | 0.549400 | 3.4:+90385012 | MS.gene02707:CDS |
| TGAGGTTATTACAAAGATGG+TGG | 0.551949 | 3.4:+90384782 | MS.gene02707:CDS |
| TCTTAGTTGCTCCTTGAGCA+TGG | 0.557687 | 3.4:-90385832 | None:intergenic |
| TAAATATGGCAGTAATGTAG+TGG | 0.558149 | 3.4:+90386103 | MS.gene02707:CDS |
| ATTGGTTTGATGAATTTCGT+GGG | 0.575858 | 3.4:+90384616 | MS.gene02707:CDS |
| TGCTTCGACCAGTTCCTCCA+AGG | 0.576223 | 3.4:-90386807 | None:intergenic |
| TTTACCTCAGTATCAGCATG+TGG | 0.579642 | 3.4:-90385154 | None:intergenic |
| TAGACCTCTTTGCTCTCTGG+TGG | 0.585063 | 3.4:-90385044 | None:intergenic |
| TTTCCCACATGCTGATACTG+AGG | 0.590378 | 3.4:+90385150 | MS.gene02707:CDS |
| AATTTCTTGCAATAACTCCC+AGG | 0.592318 | 3.4:-90385754 | None:intergenic |
| GAGGGTTTATTCGTTGGCGA+AGG | 0.603103 | 3.4:+90384638 | MS.gene02707:CDS |
| GGTTTGATGAATTTCGTGGG+AGG | 0.614649 | 3.4:+90384619 | MS.gene02707:CDS |
| GGATATTAATGGTCATCGTG+TGG | 0.622294 | 3.4:+90385108 | MS.gene02707:CDS |
| TGTAGGTTGCCTGAGACTGT+TGG | 0.624539 | 3.4:-90386041 | None:intergenic |
| AATTTCCATAAGGATCCGTA+AGG | 0.628856 | 3.4:-90386208 | None:intergenic |
| TATTGTGTTAGCCATGCTCA+AGG | 0.630724 | 3.4:+90385821 | MS.gene02707:CDS |
| TAGACAATACAATAGCTCCA+GGG | 0.639470 | 3.4:-90385084 | None:intergenic |
| AAGAAGTGATGGCAAATTTG+GGG | 0.640787 | 3.4:+90384685 | MS.gene02707:CDS |
| CAAATTGCTGCTGAAGCTGG+TGG | 0.647530 | 3.4:-90386064 | None:intergenic |
| TTACCTCAGTATCAGCATGT+GGG | 0.651847 | 3.4:-90385153 | None:intergenic |
| AGACAATACAATAGCTCCAG+GGG | 0.662124 | 3.4:-90385083 | None:intergenic |
| GTTCTGTTGGTCACACACCA+TGG | 0.665936 | 3.4:+90384837 | MS.gene02707:CDS |
| TAAATGATCCTAATGTAACA+AGG | 0.666099 | 3.4:+90386183 | MS.gene02707:CDS |
| GTTACCACCAGAGAGCAAAG+AGG | 0.674944 | 3.4:+90385040 | MS.gene02707:CDS |
| TCGTTGGCGAAGGATACACA+TGG | 0.676587 | 3.4:+90384648 | MS.gene02707:CDS |
| TTAATGGAATGAATGCACAT+TGG | 0.681427 | 3.4:+90384598 | None:intergenic |
| TTCTGATAAACTGAGCACCA+TGG | 0.689610 | 3.4:-90384854 | None:intergenic |
| CGTTGGCGAAGGATACACAT+GGG | 0.721395 | 3.4:+90384649 | MS.gene02707:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTATTTAAATGTAATTTA+AGG | + | chr3.4:90385282-90385301 | MS.gene02707:intron | 10.0% |
| !!! | TTTTTCTTATTTAATAAACA+GGG | + | chr3.4:90386764-90386783 | MS.gene02707:intron | 10.0% |
| !!! | GTTTTTCTTATTTAATAAAC+AGG | + | chr3.4:90386763-90386782 | MS.gene02707:intron | 15.0% |
| !! | AAAATCTTAGTCAATTTATG+AGG | - | chr3.4:90385313-90385332 | None:intergenic | 20.0% |
| !! | AATAAACTGCTTAAAAATTG+AGG | - | chr3.4:90386541-90386560 | None:intergenic | 20.0% |
| !! | CACTATTATTAGATAAATAC+CGG | + | chr3.4:90385672-90385691 | MS.gene02707:intron | 20.0% |
| !! | TAAAAAATGTGGATAAAGAA+AGG | - | chr3.4:90385543-90385562 | None:intergenic | 20.0% |
| !! | TACTGCATTGAATAAATTTA+AGG | + | chr3.4:90386241-90386260 | MS.gene02707:CDS | 20.0% |
| !!! | AGTTAAGTAATTTTTCAAAC+CGG | - | chr3.4:90385694-90385713 | None:intergenic | 20.0% |
| !!! | ATGGCTAAATTATTTTAGAA+AGG | + | chr3.4:90386467-90386486 | MS.gene02707:intron | 20.0% |
| !!! | TAAATTGACTAAGATTTTGT+CGG | + | chr3.4:90385315-90385334 | MS.gene02707:intron | 20.0% |
| !!! | TAGATTGTTTTGTTTGTAAA+AGG | - | chr3.4:90385267-90385286 | None:intergenic | 20.0% |
| !!! | TATCACTCAATTTTCTAATT+CGG | + | chr3.4:90386310-90386329 | MS.gene02707:intron | 20.0% |
| !!! | TTCATTTACTCTAAAAAATG+TGG | - | chr3.4:90385554-90385573 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTTCTTCTTTAGA+TGG | + | chr3.4:90386448-90386467 | MS.gene02707:intron | 20.0% |
| !!! | TTTTTAGAGTAAATGAATAG+CGG | + | chr3.4:90385557-90385576 | MS.gene02707:intron | 20.0% |
| ! | ACAATGAAGATTAGTAAAGT+TGG | - | chr3.4:90385962-90385981 | None:intergenic | 25.0% |
| ! | ATTAGTAAAGTTGGCTATAT+TGG | - | chr3.4:90385953-90385972 | None:intergenic | 25.0% |
| ! | CGGTATTTATCTAATAATAG+TGG | - | chr3.4:90385674-90385693 | None:intergenic | 25.0% |
| ! | GAAAAACAAAGTTATCACAA+CGG | - | chr3.4:90386750-90386769 | None:intergenic | 25.0% |
| ! | GTATTGTCTAAGGATATTAA+TGG | + | chr3.4:90385097-90385116 | MS.gene02707:CDS | 25.0% |
| ! | TAAATGATCCTAATGTAACA+AGG | + | chr3.4:90386183-90386202 | MS.gene02707:CDS | 25.0% |
| ! | TTATGAGGTTATTACAAAGA+TGG | + | chr3.4:90384779-90384798 | MS.gene02707:CDS | 25.0% |
| ! | TTCAGTTTATGTTCTGATTA+TGG | + | chr3.4:90385713-90385732 | MS.gene02707:intron | 25.0% |
| !! | AAATTGACTAAGATTTTGTC+GGG | + | chr3.4:90385316-90385335 | MS.gene02707:intron | 25.0% |
| !! | AATTTTCTAATTCGGTATCT+TGG | + | chr3.4:90386318-90386337 | MS.gene02707:intron | 25.0% |
| !! | TCTTTGTTTCTTGTTTCTTA+AGG | + | chr3.4:90384911-90384930 | MS.gene02707:intron | 25.0% |
| !! | TTAATTTTCATAGTGTAGCA+TGG | - | chr3.4:90385478-90385497 | None:intergenic | 25.0% |
| !! | TTTAAGCAGTTTATTTGTTG+TGG | + | chr3.4:90386546-90386565 | MS.gene02707:intron | 25.0% |
| !!! | AAGTTCTAAAGAAAGGAAAA+AGG | + | chr3.4:90385644-90385663 | MS.gene02707:intron | 25.0% |
| !!! | ATTTTAGAAAGGCTTAAAGT+TGG | + | chr3.4:90386478-90386497 | MS.gene02707:intron | 25.0% |
| !!! | TTTTCCTTTCTTTAGAACTT+AGG | - | chr3.4:90385644-90385663 | None:intergenic | 25.0% |
| AAATATACCCATGAAGACTA+AGG | - | chr3.4:90384884-90384903 | None:intergenic | 30.0% | |
| ATTACTGCCATATTTATTGC+AGG | - | chr3.4:90386099-90386118 | None:intergenic | 30.0% | |
| CTATTAGCTGAAGATTGTTA+CGG | + | chr3.4:90385890-90385909 | MS.gene02707:CDS | 30.0% | |
| CTGATGACAAAATTTCCATA+AGG | - | chr3.4:90386221-90386240 | None:intergenic | 30.0% | |
| CTTAGTCAATTTATGAGGAA+CGG | - | chr3.4:90385308-90385327 | None:intergenic | 30.0% | |
| GTAATAACCTCATAACCAAT+AGG | - | chr3.4:90384774-90384793 | None:intergenic | 30.0% | |
| TAAATATGGCAGTAATGTAG+TGG | + | chr3.4:90386103-90386122 | MS.gene02707:CDS | 30.0% | |
| TAACAATCTTCAGCTAATAG+TGG | - | chr3.4:90385890-90385909 | None:intergenic | 30.0% | |
| TAGATTCATTAAGAATGCCT+TGG | + | chr3.4:90386790-90386809 | MS.gene02707:CDS | 30.0% | |
| TAGCAATTCTATAATGATGC+AGG | - | chr3.4:90386165-90386184 | None:intergenic | 30.0% | |
| TATTAGCTGAAGATTGTTAC+GGG | + | chr3.4:90385891-90385910 | MS.gene02707:CDS | 30.0% | |
| TCTCTTTCCTGCAATAAATA+TGG | + | chr3.4:90386089-90386108 | MS.gene02707:CDS | 30.0% | |
| TGAAACAAACATGTAACACA+TGG | + | chr3.4:90386590-90386609 | MS.gene02707:intron | 30.0% | |
| ! | AATTGACTAAGATTTTGTCG+GGG | + | chr3.4:90385317-90385336 | MS.gene02707:intron | 30.0% |
| ! | GAAAAGTTTTTGCATGATTC+AGG | + | chr3.4:90386125-90386144 | MS.gene02707:CDS | 30.0% |
| ! | GACACTTTAAGTTCAAATTG+TGG | + | chr3.4:90385239-90385258 | MS.gene02707:intron | 30.0% |
| !! | ATTGGTTTGATGAATTTCGT+GGG | + | chr3.4:90384616-90384635 | MS.gene02707:CDS | 30.0% |
| !! | TTTGCCTAAGTTCTAAAGAA+AGG | + | chr3.4:90385637-90385656 | MS.gene02707:intron | 30.0% |
| AAACCATGCATTTCACTCTT+TGG | - | chr3.4:90386351-90386370 | None:intergenic | 35.0% | |
| AAAGACTCAGATTGTTCTGT+TGG | + | chr3.4:90384824-90384843 | MS.gene02707:CDS | 35.0% | |
| AAAGAGTGAAATGCATGGTT+TGG | + | chr3.4:90386350-90386369 | MS.gene02707:intron | 35.0% | |
| AAGAAGTGATGGCAAATTTG+GGG | + | chr3.4:90384685-90384704 | MS.gene02707:CDS | 35.0% | |
| AATTTCCATAAGGATCCGTA+AGG | - | chr3.4:90386211-90386230 | None:intergenic | 35.0% | |
| AATTTCTTGCAATAACTCCC+AGG | - | chr3.4:90385757-90385776 | None:intergenic | 35.0% | |
| ATGATGCGTAGCAATATGTT+TGG | + | chr3.4:90386839-90386858 | MS.gene02707:CDS | 35.0% | |
| ATTCATTAAGAATGCCTTGG+AGG | + | chr3.4:90386793-90386812 | MS.gene02707:CDS | 35.0% | |
| CAAGAAGTGATGGCAAATTT+GGG | + | chr3.4:90384684-90384703 | MS.gene02707:CDS | 35.0% | |
| TAATGTAACAAGGCTCCTTA+CGG | + | chr3.4:90386193-90386212 | MS.gene02707:CDS | 35.0% | |
| TAGACAATACAATAGCTCCA+GGG | - | chr3.4:90385087-90385106 | None:intergenic | 35.0% | |
| TCACTTTCAAGAGATAAGAC+TGG | + | chr3.4:90385782-90385801 | MS.gene02707:CDS | 35.0% | |
| TGAGGTTATTACAAAGATGG+TGG | + | chr3.4:90384782-90384801 | MS.gene02707:CDS | 35.0% | |
| TGGAGCTATTGTATTGTCTA+AGG | + | chr3.4:90385087-90385106 | MS.gene02707:CDS | 35.0% | |
| TTAGACAATACAATAGCTCC+AGG | - | chr3.4:90385088-90385107 | None:intergenic | 35.0% | |
| ! | AAAAAGTATGAAACCCCTTC+AGG | - | chr3.4:90384711-90384730 | None:intergenic | 35.0% |
| ! | ACTTTTGTCACAGAAATTCC+TGG | + | chr3.4:90385736-90385755 | MS.gene02707:intron | 35.0% |
| ! | AGAATTTGCCTTAGTCTTCA+TGG | + | chr3.4:90384873-90384892 | MS.gene02707:CDS | 35.0% |
| ! | CAAGATTTTGCAAGAAGTGA+TGG | + | chr3.4:90384674-90384693 | MS.gene02707:CDS | 35.0% |
| ! | CAATCTGAGTCTTTTGATCT+TGG | - | chr3.4:90384818-90384837 | None:intergenic | 35.0% |
| ! | CTTTTGTCACAGAAATTCCT+GGG | + | chr3.4:90385737-90385756 | MS.gene02707:intron | 35.0% |
| ! | GAATTTGCCTTAGTCTTCAT+GGG | + | chr3.4:90384874-90384893 | MS.gene02707:CDS | 35.0% |
| ! | TAATCACATGTGTGAGTTGA+TGG | + | chr3.4:90384743-90384762 | MS.gene02707:CDS | 35.0% |
| !! | CATTGGTTTGATGAATTTCG+TGG | + | chr3.4:90384615-90384634 | MS.gene02707:CDS | 35.0% |
| !! | TGTAGTTTGTCACTTTCTCT+TGG | + | chr3.4:90386627-90386646 | MS.gene02707:intron | 35.0% |
| !! | TTTATTTGTTGTGGTCCTGT+TGG | + | chr3.4:90386555-90386574 | MS.gene02707:intron | 35.0% |
| !!! | AGGGGTTTCATACTTTTTCT+TGG | + | chr3.4:90384713-90384732 | MS.gene02707:CDS | 35.0% |
| !!! | TGTTACGGGTTTGTTTTTAC+AGG | + | chr3.4:90385905-90385924 | MS.gene02707:intron | 35.0% |
| AATTAGACCTCTTTGCTCTC+TGG | - | chr3.4:90385050-90385069 | None:intergenic | 40.0% | |
| AGACAATACAATAGCTCCAG+GGG | - | chr3.4:90385086-90385105 | None:intergenic | 40.0% | |
| ATACAAATTGCTGCTGAAGC+TGG | - | chr3.4:90386070-90386089 | None:intergenic | 40.0% | |
| CGGGTTAAGGTCTTAAATTG+AGG | + | chr3.4:90385342-90385361 | MS.gene02707:intron | 40.0% | |
| CTGAAAATACCAACAGTCTC+AGG | + | chr3.4:90386032-90386051 | MS.gene02707:CDS | 40.0% | |
| CTGCAATCCTGCTTAATATC+CGG | - | chr3.4:90385382-90385401 | None:intergenic | 40.0% | |
| GCAAGAAGTGATGGCAAATT+TGG | + | chr3.4:90384683-90384702 | MS.gene02707:CDS | 40.0% | |
| GCATACTTCATTGTGCTAGA+AGG | + | chr3.4:90386711-90386730 | MS.gene02707:intron | 40.0% | |
| GGATATTAATGGTCATCGTG+TGG | + | chr3.4:90385108-90385127 | MS.gene02707:CDS | 40.0% | |
| GTTTGATGAATTTCGTGGGA+GGG | + | chr3.4:90384620-90384639 | MS.gene02707:CDS | 40.0% | |
| TATTGTGTTAGCCATGCTCA+AGG | + | chr3.4:90385821-90385840 | MS.gene02707:CDS | 40.0% | |
| TCAACAGAGTAATTGCCAAC+AGG | - | chr3.4:90386573-90386592 | None:intergenic | 40.0% | |
| TCGTTCTGTTGAGAAACTGT+TGG | + | chr3.4:90385012-90385031 | MS.gene02707:CDS | 40.0% | |
| TGCAATCCTGCTTAATATCC+GGG | - | chr3.4:90385381-90385400 | None:intergenic | 40.0% | |
| TTACCTCAGTATCAGCATGT+GGG | - | chr3.4:90385156-90385175 | None:intergenic | 40.0% | |
| TTCTGATAAACTGAGCACCA+TGG | - | chr3.4:90384857-90384876 | None:intergenic | 40.0% | |
| TTGCCAAAGAGTGAAATGCA+TGG | + | chr3.4:90386345-90386364 | MS.gene02707:intron | 40.0% | |
| TTTACCTCAGTATCAGCATG+TGG | - | chr3.4:90385157-90385176 | None:intergenic | 40.0% | |
| ! | ACTAAGATTTTGTCGGGGTT+CGG | + | chr3.4:90385322-90385341 | MS.gene02707:intron | 40.0% |
| ! | GGTTGATCCTATTGGTTATG+AGG | + | chr3.4:90384764-90384783 | MS.gene02707:CDS | 40.0% |
| ! | GTTTTTGCATGATTCAGGAG+TGG | + | chr3.4:90386130-90386149 | MS.gene02707:CDS | 40.0% |
| ! | TGCTAGAAGGCTTGGTTTAT+TGG | + | chr3.4:90386724-90386743 | MS.gene02707:intron | 40.0% |
| !! | GAGTTGATGGTTGATCCTAT+TGG | + | chr3.4:90384756-90384775 | MS.gene02707:CDS | 40.0% |
| !! | GTAAGGAGCCTTGTTACATT+AGG | - | chr3.4:90386194-90386213 | None:intergenic | 40.0% |
| !!! | ATGTTTTTCTGAGACCCTCT+AGG | + | chr3.4:90385445-90385464 | MS.gene02707:intron | 40.0% |
| AGCATGGCATGATTCCTAGA+GGG | - | chr3.4:90385462-90385481 | None:intergenic | 45.0% | |
| CACAATCCCGGATATTAAGC+AGG | + | chr3.4:90385372-90385391 | MS.gene02707:intron | 45.0% | |
| CAGGATTTGAATGCAACTGC+TGG | + | chr3.4:90385399-90385418 | MS.gene02707:intron | 45.0% | |
| CGGATATTAAGCAGGATTGC+AGG | + | chr3.4:90385380-90385399 | MS.gene02707:intron | 45.0% | |
| CTTCATTGTGCTAGAAGGCT+TGG | + | chr3.4:90386716-90386735 | MS.gene02707:intron | 45.0% | |
| GATGCATGATACTTACGTGC+AGG | - | chr3.4:90386517-90386536 | None:intergenic | 45.0% | |
| GGTTTGATGAATTTCGTGGG+AGG | + | chr3.4:90384619-90384638 | MS.gene02707:CDS | 45.0% | |
| TAAGAATGCCTTGGAGGAAC+TGG | + | chr3.4:90386799-90386818 | MS.gene02707:CDS | 45.0% | |
| TAGCATGGCATGATTCCTAG+AGG | - | chr3.4:90385463-90385482 | None:intergenic | 45.0% | |
| TCTTAGTTGCTCCTTGAGCA+TGG | - | chr3.4:90385835-90385854 | None:intergenic | 45.0% | |
| TTTCCCACATGCTGATACTG+AGG | + | chr3.4:90385150-90385169 | MS.gene02707:CDS | 45.0% | |
| ! | ATTATGTCAGCTTTGACCCC+TGG | + | chr3.4:90385067-90385086 | MS.gene02707:CDS | 45.0% |
| ! | CATGGTTTGGCTGTCTTAGT+TGG | + | chr3.4:90386363-90386382 | MS.gene02707:intron | 45.0% |
| ! | CTAAGATTTTGTCGGGGTTC+GGG | + | chr3.4:90385323-90385342 | MS.gene02707:intron | 45.0% |
| AGGCTCCTTACGGATCCTTA+TGG | + | chr3.4:90386203-90386222 | MS.gene02707:CDS | 50.0% | |
| CAAATTGCTGCTGAAGCTGG+TGG | - | chr3.4:90386067-90386086 | None:intergenic | 50.0% | |
| CGTTGGCGAAGGATACACAT+GGG | + | chr3.4:90384649-90384668 | MS.gene02707:CDS | 50.0% | |
| GAGGGTTTATTCGTTGGCGA+AGG | + | chr3.4:90384638-90384657 | MS.gene02707:CDS | 50.0% | |
| GCGGTATGCTTGCTCTTGTT+TGG | + | chr3.4:90385576-90385595 | MS.gene02707:intron | 50.0% | |
| GTTACCACCAGAGAGCAAAG+AGG | + | chr3.4:90385040-90385059 | MS.gene02707:CDS | 50.0% | |
| GTTCTGTTGGTCACACACCA+TGG | + | chr3.4:90384837-90384856 | MS.gene02707:CDS | 50.0% | |
| TAGACCTCTTTGCTCTCTGG+TGG | - | chr3.4:90385047-90385066 | None:intergenic | 50.0% | |
| TCGTGGGAGGGTTTATTCGT+TGG | + | chr3.4:90384632-90384651 | MS.gene02707:CDS | 50.0% | |
| TCGTTGGCGAAGGATACACA+TGG | + | chr3.4:90384648-90384667 | MS.gene02707:CDS | 50.0% | |
| TGTAGGTTGCCTGAGACTGT+TGG | - | chr3.4:90386044-90386063 | None:intergenic | 50.0% | |
| ! | ATGGCAAATTTGGGGCCTGA+AGG | + | chr3.4:90384693-90384712 | MS.gene02707:CDS | 50.0% |
| ! | TGAGGCTGCTTTCACAATCC+CGG | + | chr3.4:90385360-90385379 | MS.gene02707:intron | 50.0% |
| ! | TGGCAAATTTGGGGCCTGAA+GGG | + | chr3.4:90384694-90384713 | MS.gene02707:CDS | 50.0% |
| !! | TTTTGTCGGGGTTCGGGTTA+AGG | + | chr3.4:90385329-90385348 | MS.gene02707:intron | 50.0% |
| GCTGGCACTGTGCAGATTGT+GGG | + | chr3.4:90385417-90385436 | MS.gene02707:intron | 55.0% | |
| TGCTGGCACTGTGCAGATTG+TGG | + | chr3.4:90385416-90385435 | MS.gene02707:intron | 55.0% | |
| TGCTTCGACCAGTTCCTCCA+AGG | - | chr3.4:90386810-90386829 | None:intergenic | 55.0% | |
| ! | GGCAAATTTGGGGCCTGAAG+GGG | + | chr3.4:90384695-90384714 | MS.gene02707:CDS | 55.0% |
| ! | GCTGCTGAAGCTGGTGGTGT+AGG | - | chr3.4:90386061-90386080 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90384606 | 90386868 | 90384606 | ID=MS.gene02707 |
| chr3.4 | mRNA | 90384606 | 90386868 | 90384606 | ID=MS.gene02707.t1;Parent=MS.gene02707 |
| chr3.4 | exon | 90384606 | 90384895 | 90384606 | ID=MS.gene02707.t1.exon1;Parent=MS.gene02707.t1 |
| chr3.4 | CDS | 90384606 | 90384895 | 90384606 | ID=cds.MS.gene02707.t1;Parent=MS.gene02707.t1 |
| chr3.4 | exon | 90385009 | 90385171 | 90385009 | ID=MS.gene02707.t1.exon2;Parent=MS.gene02707.t1 |
| chr3.4 | CDS | 90385009 | 90385171 | 90385009 | ID=cds.MS.gene02707.t1;Parent=MS.gene02707.t1 |
| chr3.4 | exon | 90385749 | 90385912 | 90385749 | ID=MS.gene02707.t1.exon3;Parent=MS.gene02707.t1 |
| chr3.4 | CDS | 90385749 | 90385912 | 90385749 | ID=cds.MS.gene02707.t1;Parent=MS.gene02707.t1 |
| chr3.4 | exon | 90386004 | 90386262 | 90386004 | ID=MS.gene02707.t1.exon4;Parent=MS.gene02707.t1 |
| chr3.4 | CDS | 90386004 | 90386262 | 90386004 | ID=cds.MS.gene02707.t1;Parent=MS.gene02707.t1 |
| chr3.4 | exon | 90386785 | 90386868 | 90386785 | ID=MS.gene02707.t1.exon5;Parent=MS.gene02707.t1 |
| chr3.4 | CDS | 90386785 | 90386868 | 90386785 | ID=cds.MS.gene02707.t1;Parent=MS.gene02707.t1 |
| Gene Sequence |
| Protein sequence |
