AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027093

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027093.t1 MTR_3g051300 95.027 744 31 1 1 744 1 738 0.0 1459
MS.gene027093.t1 MTR_5g092570 67.867 750 228 3 1 743 1 744 0.0 1027
MS.gene027093.t1 MTR_2g102180 50.509 786 341 7 1 744 1 780 0.0 768
MS.gene027093.t1 MTR_4g012050 49.244 794 352 10 1 753 1 784 0.0 739
MS.gene027093.t1 MTR_3g081170 27.525 792 486 21 2 720 25 801 7.70e-86 290
MS.gene027093.t1 MTR_7g024580 28.205 663 412 13 4 662 10 612 6.53e-76 258
MS.gene027093.t1 MTR_4g063710 28.186 667 413 14 4 665 10 615 2.06e-75 257
MS.gene027093.t1 MTR_4g130540 27.903 663 414 14 4 662 9 611 4.73e-75 256
MS.gene027093.t1 MTR_7g024390 27.903 663 414 13 4 662 10 612 1.05e-74 255
MS.gene027093.t1 MTR_7g099680 33.412 425 274 4 4 425 10 428 3.16e-74 253
MS.gene027093.t1 MTR_4g063720 27.736 667 416 14 4 665 10 615 7.39e-74 253
MS.gene027093.t1 MTR_8g099945 26.870 655 382 14 2 636 37 614 9.91e-72 247
MS.gene027093.t1 MTR_7g078190 34.824 425 268 4 4 424 10 429 1.46e-71 246
MS.gene027093.t1 MTR_8g099795 27.414 642 395 14 2 636 37 614 2.24e-71 246
MS.gene027093.t1 MTR_6g033760 32.553 427 279 4 4 427 10 430 1.13e-70 243
MS.gene027093.t1 MTR_6g033955 31.628 430 280 5 4 425 10 433 2.51e-70 243
MS.gene027093.t1 MTR_8g032650 33.803 426 270 7 4 424 10 428 5.55e-70 241
MS.gene027093.t1 MTR_7g025740 32.944 428 277 5 4 427 10 431 6.79e-70 242
MS.gene027093.t1 MTR_7g025760 32.706 425 276 5 4 424 10 428 6.29e-69 238
MS.gene027093.t1 MTR_2g010020 34.236 406 249 5 3 403 56 448 1.76e-68 238
MS.gene027093.t1 MTR_2g010020 34.236 406 249 5 3 403 57 449 1.88e-68 238
MS.gene027093.t1 MTR_7g026030 32.235 425 278 5 4 424 10 428 1.24e-67 235
MS.gene027093.t1 MTR_2g437440 32.587 402 264 5 4 400 10 409 1.35e-67 234
MS.gene027093.t1 MTR_7g024030 32.471 425 277 5 4 424 10 428 2.19e-67 234
MS.gene027093.t1 MTR_2g038260 32.000 425 280 5 4 424 10 429 5.03e-67 233
MS.gene027093.t1 MTR_5g066800 31.991 447 267 10 4 427 10 442 5.90e-67 233
MS.gene027093.t1 MTR_6g033850 32.090 402 269 3 4 402 10 410 6.69e-67 234
MS.gene027093.t1 MTR_6g033870 30.754 504 317 10 4 489 11 500 1.62e-66 233
MS.gene027093.t1 MTR_6g033820 31.323 431 282 4 4 426 10 434 2.20e-66 233
MS.gene027093.t1 MTR_7g025790 32.235 425 278 5 4 424 10 428 8.21e-66 230
MS.gene027093.t1 MTR_4g092920 33.005 406 255 5 3 403 53 446 8.78e-66 231
MS.gene027093.t1 MTR_7g025720 33.178 428 270 7 4 424 10 428 1.01e-65 230
MS.gene027093.t1 MTR_7g021440 32.864 426 274 8 4 424 10 428 1.50e-65 229
MS.gene027093.t1 MTR_2g032550 32.319 427 275 7 4 424 11 429 1.77e-65 229
MS.gene027093.t1 MTR_7g451380 33.002 403 263 5 4 401 10 410 2.84e-65 228
MS.gene027093.t1 MTR_7g026090 32.944 428 269 6 4 424 10 426 3.62e-65 228
MS.gene027093.t1 MTR_7g029415 29.675 492 332 8 4 489 17 500 4.26e-65 228
MS.gene027093.t1 MTR_2g017730 30.626 431 284 5 4 425 9 433 4.27e-65 228
MS.gene027093.t1 MTR_2g022050 31.603 443 291 7 4 441 10 445 1.13e-64 227
MS.gene027093.t1 MTR_4g079590 30.986 426 282 7 4 424 10 428 2.01e-63 223
MS.gene027093.t1 MTR_7g025770 30.465 430 283 7 2 424 8 428 2.59e-63 223
MS.gene027093.t1 MTR_7g026170 32.000 425 280 5 4 424 10 429 5.30e-63 222
MS.gene027093.t1 MTR_7g025620 30.841 428 284 6 2 424 8 428 8.29e-63 221
MS.gene027093.t1 MTR_7g025820 30.417 503 322 11 4 493 10 497 1.65e-62 220
MS.gene027093.t1 MTR_7g078210 31.850 427 279 6 4 425 10 429 3.40e-62 220
MS.gene027093.t1 MTR_2g032580 30.607 428 287 6 4 427 10 431 7.57e-62 218
MS.gene027093.t1 MTR_7g025630 32.587 402 252 5 4 401 10 396 3.34e-61 217
MS.gene027093.t1 MTR_7g026130 31.111 405 272 5 4 403 10 412 4.69e-61 219
MS.gene027093.t1 MTR_7g026110 31.860 430 272 9 4 424 10 427 5.43e-61 216
MS.gene027093.t1 MTR_2g040370 32.982 379 250 2 4 381 1030 1405 5.52e-61 224
MS.gene027093.t1 MTR_2g040370 30.055 366 251 3 4 367 1414 1776 1.90e-50 192
MS.gene027093.t1 MTR_2g040370 32.982 379 250 2 4 381 1030 1405 6.92e-61 223
MS.gene027093.t1 MTR_2g040370 30.055 366 251 3 4 367 1414 1776 2.23e-50 192
MS.gene027093.t1 MTR_2g040260 31.990 397 266 2 4 399 1039 1432 4.83e-60 221
MS.gene027093.t1 MTR_7g011590 30.769 403 262 4 4 402 10 399 1.31e-59 213
MS.gene027093.t1 MTR_2g040160 31.877 389 261 2 4 391 1110 1495 5.33e-59 218
MS.gene027093.t1 MTR_2g038270 29.783 460 301 8 3 446 9 462 6.23e-59 211
MS.gene027093.t1 MTR_2g032160 31.268 355 241 2 4 356 10 363 1.02e-57 204
MS.gene027093.t1 MTR_7g451360 31.281 406 244 5 4 405 10 384 3.30e-57 205
MS.gene027093.t1 MTR_7g026140 29.882 425 273 6 4 424 10 413 5.17e-57 206
MS.gene027093.t1 MTR_4g027145 29.748 437 286 6 4 424 10 441 2.18e-54 198
MS.gene027093.t1 MTR_8g103930 29.639 415 260 8 4 403 12 409 9.81e-54 196
MS.gene027093.t1 MTR_2g040350 31.188 404 266 4 3 399 1038 1436 1.55e-53 201
MS.gene027093.t1 MTR_2g040350 31.188 404 266 4 3 399 820 1218 2.50e-53 200
MS.gene027093.t1 MTR_7g025260 31.956 363 242 4 42 400 20 381 7.70e-52 191
MS.gene027093.t1 MTR_2g005690 31.527 406 262 6 3 403 71 465 4.28e-51 190
MS.gene027093.t1 MTR_1g017130 27.294 425 261 6 4 424 10 390 1.36e-50 187
MS.gene027093.t1 MTR_2g040220 30.688 378 257 4 4 378 1019 1394 5.07e-50 190
MS.gene027093.t1 MTR_7g074460 29.529 403 261 6 4 402 10 393 9.25e-50 184
MS.gene027093.t1 MTR_7g035155 30.240 334 230 2 4 335 10 342 1.16e-48 181
MS.gene027093.t1 MTR_6g033800 31.776 321 217 2 84 403 1 320 2.50e-48 180
MS.gene027093.t1 MTR_1g077230 33.455 275 178 3 4 275 10 282 6.68e-48 171
MS.gene027093.t1 MTR_4g092920 32.099 324 204 4 84 403 1 312 4.93e-46 173
MS.gene027093.t1 MTR_7g007000 27.123 424 257 9 4 424 10 384 1.64e-45 172
MS.gene027093.t1 MTR_4g063720 23.988 667 370 19 4 665 10 544 2.81e-42 162
MS.gene027093.t1 MTR_1g041565 26.277 411 245 8 2 408 4 360 7.23e-39 152
MS.gene027093.t1 MTR_7g026080 31.780 236 156 3 4 236 10 243 2.03e-36 138
MS.gene027093.t1 MTR_6g034005 28.399 331 230 4 74 403 2 326 3.54e-35 143
MS.gene027093.t1 MTR_6g033810 27.303 304 169 3 103 403 33 287 7.63e-30 120
MS.gene027093.t1 MTR_4g088515 28.571 252 155 4 4 251 277 507 4.03e-29 124
MS.gene027093.t1 MTR_1207s0010 35.795 176 111 2 103 278 4 177 2.95e-28 112
MS.gene027093.t1 MTR_2g031670 27.434 226 159 2 15 238 45 267 3.04e-28 117
MS.gene027093.t1 MTR_5g006180 25.952 420 268 16 4 404 30 425 2.98e-19 92.4
MS.gene027093.t1 MTR_7g026180 35.246 122 79 0 70 191 23 144 7.14e-19 89.0
MS.gene027093.t1 MTR_7g026050 28.326 233 142 5 238 462 1 216 5.43e-18 86.7
MS.gene027093.t1 MTR_5g097190 26.286 175 116 3 4 176 159 322 3.28e-17 84.7
MS.gene027093.t1 MTR_4g115780 24.115 452 304 14 4 429 141 579 5.21e-17 85.9
MS.gene027093.t1 MTR_6g478100 24.658 219 150 3 30 248 10 213 5.44e-17 83.2
MS.gene027093.t1 MTR_4g107920 26.471 306 202 8 113 404 125 421 3.31e-16 82.8
MS.gene027093.t1 MTR_5g090110 23.571 420 277 12 4 404 29 423 1.86e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027093.t1 AT1G11660 59.546 749 288 4 1 748 1 735 0.0 897
MS.gene027093.t1 AT1G11660 59.546 749 288 4 1 748 1 735 0.0 897
MS.gene027093.t1 AT1G11660 59.546 749 288 4 1 748 1 735 0.0 897
MS.gene027093.t1 AT1G11660 58.006 712 284 4 38 748 1 698 0.0 828
MS.gene027093.t1 AT1G79930 50.063 791 349 7 1 753 1 783 0.0 779
MS.gene027093.t1 AT1G79930 50.127 786 351 6 1 748 1 783 0.0 779
MS.gene027093.t1 AT1G79920 52.080 649 275 6 1 617 1 645 0.0 667
MS.gene027093.t1 AT1G79920 52.080 649 275 6 1 617 1 645 0.0 664
MS.gene027093.t1 AT1G79920 52.080 649 275 6 1 617 1 645 0.0 664
MS.gene027093.t1 AT1G79920 52.080 649 275 6 1 617 1 645 0.0 664
MS.gene027093.t1 AT4G16660 28.922 816 509 25 2 753 25 833 1.45e-88 297
MS.gene027093.t1 AT4G16660 28.941 812 506 25 2 749 49 853 1.49e-88 298
MS.gene027093.t1 AT5G28540 28.144 668 408 15 2 662 36 638 1.94e-78 265
MS.gene027093.t1 AT5G42020 27.844 668 410 15 2 662 36 638 5.95e-78 264
MS.gene027093.t1 AT5G42020 27.844 668 410 15 2 662 41 643 8.11e-78 264
MS.gene027093.t1 AT1G16030 27.602 663 416 13 4 662 9 611 2.19e-76 259
MS.gene027093.t1 AT5G02500 27.970 665 411 14 4 662 10 612 3.21e-76 259
MS.gene027093.t1 AT3G12580 27.803 669 413 15 4 665 10 615 4.84e-75 256
MS.gene027093.t1 AT3G09440 28.293 668 405 15 4 662 10 612 1.04e-74 255
MS.gene027093.t1 AT3G09440 28.293 668 405 15 4 662 10 612 1.04e-74 255
MS.gene027093.t1 AT3G09440 28.293 668 405 15 4 662 10 612 1.04e-74 255
MS.gene027093.t1 AT3G09440 28.293 668 405 15 4 662 10 612 1.04e-74 255
MS.gene027093.t1 AT1G09080 28.700 669 402 14 2 662 41 642 1.55e-74 255
MS.gene027093.t1 AT1G09080 28.700 669 402 14 2 662 51 652 3.03e-74 254
MS.gene027093.t1 AT5G42020 32.574 439 276 7 2 436 36 458 1.77e-72 248
MS.gene027093.t1 AT5G02500 34.301 379 247 2 4 381 10 387 5.87e-72 244
MS.gene027093.t1 AT1G56410 32.754 403 267 3 4 403 10 411 1.13e-70 243
MS.gene027093.t1 AT5G02490 28.209 670 403 18 4 662 10 612 3.21e-70 243
MS.gene027093.t1 AT5G09590 33.498 406 253 6 3 403 59 452 1.15e-66 234
MS.gene027093.t1 AT4G37910 33.420 383 240 4 3 380 54 426 4.81e-61 218
MS.gene027093.t1 AT4G37910 33.420 383 240 4 3 380 54 426 4.81e-61 218
MS.gene027093.t1 AT5G49910 32.266 406 259 6 3 403 80 474 4.24e-52 193
MS.gene027093.t1 AT4G24280 31.527 406 262 6 3 403 80 474 8.37e-50 187
MS.gene027093.t1 AT2G32120 24.777 448 278 16 4 425 31 445 1.04e-21 100
MS.gene027093.t1 AT2G32120 24.777 448 278 16 4 425 31 445 1.04e-21 100

Find 147 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATAGGCAGGAGATTTC+TGG 0.177339 3.4:+48617930 MS.gene027093:CDS
CCCATCTCGGATTGTGTTAT+TGG 0.218141 3.4:+48618129 MS.gene027093:CDS
GAATCTTGCATCTGGATTAT+TGG 0.227874 3.4:+48618635 MS.gene027093:CDS
TTGTGGAGAATCACACTTAT+TGG 0.239483 3.4:-48621288 None:intergenic
AAGATTGGGTCGACATTCTT+AGG 0.240585 3.4:-48623390 None:intergenic
TGCATTGCAGCGTTTGAGTT+TGG 0.267137 3.4:+48618348 MS.gene027093:CDS
TTTCATTTGAAATACTTAGA+TGG 0.296582 3.4:+48618024 MS.gene027093:CDS
AGCTAGTTGGTTCAGGTTCT+AGG 0.310491 3.4:+48618730 MS.gene027093:CDS
CTCTGTCCTGTTGAGCTAAC+TGG 0.311382 3.4:-48621758 None:intergenic
TCGCAAGTGAAGAGATTTAT+AGG 0.314040 3.4:+48617916 MS.gene027093:CDS
CTATCTGAGGTCTCGGACTT+AGG 0.323825 3.4:-48621230 None:intergenic
AAATCTCTTCACTTGCGATA+TGG 0.325541 3.4:-48617911 None:intergenic
GCATTGCAGCGTTTGAGTTT+GGG 0.325875 3.4:+48618349 MS.gene027093:CDS
TCTGTGGAGCTAGTTGGTTC+AGG 0.330516 3.4:+48618723 MS.gene027093:CDS
GATTGAAGTCCATATGAAAA+AGG 0.332999 3.4:-48619370 None:intergenic
GCCAACTGATTTGTCCCATT+TGG 0.343188 3.4:+48619480 MS.gene027093:CDS
ACTCACTTGCATTCAACTTT+CGG 0.346468 3.4:-48618803 None:intergenic
AAAACTAGAAGATCTGAAAA+AGG 0.347739 3.4:+48623014 MS.gene027093:CDS
ACCCCTGCTGTCGTCTGCTT+TGG 0.352853 3.4:+48617826 MS.gene027093:CDS
CTTGGAATGAGATGGCCTTT+TGG 0.353900 3.4:-48619436 None:intergenic
AGCGCCATTGGCAACAGAAT+TGG 0.380177 3.4:-48621255 None:intergenic
ATATGACTTGACCATAAGAT+TGG 0.380654 3.4:-48623405 None:intergenic
GAGATTTCTGGATCCTGATA+TGG 0.383130 3.4:+48617942 MS.gene027093:CDS
AGCATAGACATTATTTGAAC+TGG 0.388293 3.4:-48618063 None:intergenic
GCGCAATAGAGGAGCTAAAC+AGG 0.389650 3.4:+48623433 MS.gene027093:CDS
GATGGATGAGAAAGATGTTA+AGG 0.391889 3.4:+48618587 MS.gene027093:CDS
AGAACTCCAGTTAGCTCAAC+AGG 0.394053 3.4:+48621752 MS.gene027093:CDS
ACGCAGCCTAATGCAAGCCT+TGG 0.398015 3.4:-48618496 None:intergenic
GAATTTGAGAATCTTGCATC+TGG 0.403441 3.4:+48618627 MS.gene027093:CDS
TCGCCAAAGCAGACGACAGC+AGG 0.408209 3.4:-48617829 None:intergenic
AGAATGTCGACCCAATCTTA+TGG 0.412429 3.4:+48623394 MS.gene027093:CDS
TCAATAAATGCAACATAACT+TGG 0.417342 3.4:-48618300 None:intergenic
TCGATATTTAGCGGTGCCTC+TGG 0.422641 3.4:-48618558 None:intergenic
TCTTTGTACCGAATCTCAAT+TGG 0.423825 3.4:-48623120 None:intergenic
CTTGCGATATGGTTGACTTT+GGG 0.426132 3.4:-48617900 None:intergenic
GTTGAATGATGAATCGAAAC+GGG 0.426655 3.4:+48617801 MS.gene027093:CDS
GACTGAGGATTGGCTTTATG+AGG 0.428957 3.4:+48622957 MS.gene027093:CDS
CTTGACGCGGCAATAATTGC+TGG 0.430407 3.4:+48618192 MS.gene027093:CDS
GATAATAATGTACTCACTGC+TGG 0.437528 3.4:-48618756 None:intergenic
AAATTCTCATTCACTGCAAT+AGG 0.439271 3.4:-48621684 None:intergenic
TTCATTTGAAATACTTAGAT+GGG 0.442131 3.4:+48618025 MS.gene027093:CDS
TTGCGTAGAAAGCTTCCAAA+TGG 0.446853 3.4:-48619495 None:intergenic
TGCAAGTCGGTGAAGTATGA+TGG 0.449561 3.4:-48618156 None:intergenic
ACTGCAACTGCTCTTAGTTA+TGG 0.451796 3.4:+48618246 MS.gene027093:CDS
GCAGTGAATGAGAATTTCTA+TGG 0.456214 3.4:+48621690 MS.gene027093:CDS
GATGGGAAGACCACAGTACT+TGG 0.456596 3.4:-48619454 None:intergenic
ATTTCTTCTGTGGAGCTAGT+TGG 0.456860 3.4:+48618717 MS.gene027093:CDS
CGTTTGAGTTTGGGCAAATG+AGG 0.457526 3.4:+48618358 MS.gene027093:CDS
TCATATTAAGAGCGCAATAG+AGG 0.458464 3.4:+48623422 MS.gene027093:CDS
GACAAATCAGTTGGCTTGGA+TGG 0.460531 3.4:-48619472 None:intergenic
ACTTGCGATATGGTTGACTT+TGG 0.461121 3.4:-48617901 None:intergenic
GTATTCTCGCACACGGTATG+TGG 0.463406 3.4:-48618868 None:intergenic
AGCATTAATTGAAGCAGGCT+TGG 0.471739 3.4:+48618683 MS.gene027093:CDS
TCAATTAATGCTTCGTTGCA+AGG 0.472169 3.4:-48618672 None:intergenic
AACAGCTCTTCAACACATAT+CGG 0.473623 3.4:+48622884 MS.gene027093:intron
AAGAGAGGGATGTCATATCT+AGG 0.475264 3.4:+48622923 MS.gene027093:CDS
TGTGTGGCTTCAGTTGATCA+AGG 0.477113 3.4:+48621160 MS.gene027093:intron
AACGAAGCATTAATTGAAGC+AGG 0.477356 3.4:+48618678 MS.gene027093:CDS
GGTACTATCTTCAGCGCCAT+TGG 0.480640 3.4:-48621267 None:intergenic
ATGGATGAGAAAGATGTTAA+GGG 0.484542 3.4:+48618588 MS.gene027093:CDS
ATGGGACAAATCAGTTGGCT+TGG 0.486215 3.4:-48619476 None:intergenic
TTTGGGAAAAGTACACCATC+TGG 0.486296 3.4:-48619418 None:intergenic
GCATGGATCTCAAGGTAGTA+AGG 0.492874 3.4:+48620996 MS.gene027093:CDS
GCTAAATATCGAGTGTCTGA+TGG 0.498645 3.4:+48618569 MS.gene027093:CDS
TTTCAGATCGGTCCTATGCA+TGG 0.498893 3.4:+48620979 MS.gene027093:intron
ATTGGTACTATCTGAGGTCT+CGG 0.498902 3.4:-48621237 None:intergenic
TGAAACAAAACGCCACCATC+CGG 0.499778 3.4:-48618006 None:intergenic
TATGTTGCATTTATTGACAT+TGG 0.501872 3.4:+48618306 MS.gene027093:CDS
TGTTGAATGATGAATCGAAA+CGG 0.503473 3.4:+48617800 MS.gene027093:CDS
CTAATGCCAAGGCTTGCATT+AGG 0.505620 3.4:+48618490 MS.gene027093:CDS
TAGATATGACATCCCTCTCT+TGG 0.505654 3.4:-48622921 None:intergenic
CTTGCATTCAACTTTCGGCT+CGG 0.505967 3.4:-48618798 None:intergenic
TCTGGATCCTGATATGGAAA+AGG 0.508996 3.4:+48617948 MS.gene027093:CDS
AAGTGAAGAGATTTATAGGC+AGG 0.509278 3.4:+48617920 MS.gene027093:CDS
ACAGTACTTACATAACTTTG+TGG 0.511678 3.4:-48621305 None:intergenic
TATGACTTGACCATAAGATT+GGG 0.512744 3.4:-48623404 None:intergenic
AGATTTGGAGGTACCCATCT+CGG 0.515016 3.4:+48618116 MS.gene027093:CDS
TCTTGAAACTTCTCAAGGGC+CGG 0.516494 3.4:+48617987 MS.gene027093:CDS
TGGTGGATCCAATTGAGATT+CGG 0.522302 3.4:+48623112 MS.gene027093:CDS
ACCAATAACACAATCCGAGA+TGG 0.528131 3.4:-48618130 None:intergenic
TAATCTTAAGGAAAACAGAA+AGG 0.528961 3.4:-48623468 None:intergenic
TGCGTAGAAAGCTTCCAAAT+GGG 0.529319 3.4:-48619494 None:intergenic
CTCCCTCTTGAAACTTCTCA+AGG 0.537397 3.4:+48617982 MS.gene027093:CDS
TGAGTTGAAATGAGTGTGGT+AGG 0.537638 3.4:+48617715 None:intergenic
TTGCTGTGGCAAAGCATCGC+GGG 0.538277 3.4:+48617767 MS.gene027093:CDS
TGTCTATGAGACGAGGAGTA+AGG 0.539018 3.4:+48621824 MS.gene027093:CDS
TCCAAATGGGACAAATCAGT+TGG 0.545647 3.4:-48619481 None:intergenic
AATCTTAAGGAAAACAGAAA+GGG 0.545864 3.4:-48623467 None:intergenic
TTGACGCGGCAATAATTGCT+GGG 0.549851 3.4:+48618193 MS.gene027093:CDS
ACAAATCAGTTGGCTTGGAT+GGG 0.550025 3.4:-48619471 None:intergenic
CTTCACCGACTTGCAGAGAC+GGG 0.553538 3.4:+48618164 MS.gene027093:CDS
TATTCTCGCACACGGTATGT+GGG 0.555935 3.4:-48618867 None:intergenic
CGAATTTCTGATAGACCAGA+TGG 0.560566 3.4:+48619403 MS.gene027093:CDS
GTTTGCAAGAGACTGAGGAT+TGG 0.563246 3.4:+48622947 MS.gene027093:CDS
TGCAGAGAAGATTTCTTCTG+TGG 0.563467 3.4:+48618707 MS.gene027093:CDS
CAGTCGTGTATCAGTCTCAA+AGG 0.575227 3.4:-48618222 None:intergenic
CCAATAACACAATCCGAGAT+GGG 0.575647 3.4:-48618129 None:intergenic
GCAAGTCGGTGAAGTATGAT+GGG 0.575797 3.4:-48618155 None:intergenic
GAAAAGATAAGGCGAACAGA+AGG 0.576632 3.4:+48621658 MS.gene027093:CDS
CGCCAAAGCAGACGACAGCA+GGG 0.576685 3.4:-48617828 None:intergenic
AGATTGTCTAAGAAAAGATA+AGG 0.579423 3.4:+48621647 MS.gene027093:CDS
ATGTTAAGGGCTTTATAACA+AGG 0.580637 3.4:+48618601 MS.gene027093:CDS
TTAGCAATGAAGCAGAGCAT+TGG 0.581229 3.4:+48623334 MS.gene027093:CDS
AGAGCATTGGCTAACAGAGA+AGG 0.581697 3.4:+48623347 MS.gene027093:CDS
GGTCCTATGCATGGATCTCA+AGG 0.585543 3.4:+48620988 MS.gene027093:CDS
TCTGCTTTGGCGAGAAGCAG+CGG 0.586019 3.4:+48617839 MS.gene027093:CDS
ATCAGACACTCGATATTTAG+CGG 0.586237 3.4:-48618567 None:intergenic
ACTTCACCGACTTGCAGAGA+CGG 0.589672 3.4:+48618163 MS.gene027093:CDS
TGATGTGTATTCTAATGCCA+AGG 0.591618 3.4:+48618479 MS.gene027093:CDS
AACAGAATTGGTACTATCTG+AGG 0.592528 3.4:-48621243 None:intergenic
GAAACTTCTCAAGGGCCGGA+TGG 0.593136 3.4:+48617991 MS.gene027093:CDS
ACTTCTCAAGGGCCGGATGG+TGG 0.593340 3.4:+48617994 MS.gene027093:CDS
GAGTTGAAATGAGTGTGGTA+GGG 0.594039 3.4:+48617716 None:intergenic
ACTCCTCGTCTCATAGACAT+AGG 0.598057 3.4:-48621820 None:intergenic
AGCTCAACAGGACAGAGCTG+TGG 0.600190 3.4:+48621764 MS.gene027093:CDS
CTCATAGACATAGGACTCCA+AGG 0.602157 3.4:-48621811 None:intergenic
GCTTTGCTAGTGACCAAGAG+AGG 0.604732 3.4:+48622908 MS.gene027093:CDS
AATGAACATGAACTACCACC+TGG 0.605194 3.4:+48619517 MS.gene027093:CDS
CCACAGTACTTGGAATGAGA+TGG 0.606806 3.4:-48619444 None:intergenic
ATACCGTGTGCGAGAATACG+AGG 0.608025 3.4:+48618872 MS.gene027093:CDS
CAAAGAAAAGAAGAACACCT+TGG 0.609634 3.4:+48621794 MS.gene027093:CDS
AGTACCAATTCTGTTGCCAA+TGG 0.610914 3.4:+48621251 MS.gene027093:CDS
TTTCTATGGTGGAATGACAA+TGG 0.611799 3.4:+48621704 MS.gene027093:CDS
TAGGAGTTTGCAAGAGACTG+AGG 0.618731 3.4:+48622942 MS.gene027093:CDS
TCAGTTGATCAAGGATCGCA+CGG 0.618974 3.4:+48621169 MS.gene027093:intron
CATTGGTCAATGCGACACTC+AGG 0.620652 3.4:+48618323 MS.gene027093:CDS
TGTTAAGGGCTTTATAACAA+GGG 0.620789 3.4:+48618602 MS.gene027093:CDS
GAGGATTGGCTTTATGAGGA+CGG 0.621172 3.4:+48622961 MS.gene027093:CDS
GGCCCTTGAGAAGTTTCAAG+AGG 0.625597 3.4:-48617985 None:intergenic
TCCCTCTTGAAACTTCTCAA+GGG 0.627702 3.4:+48617983 MS.gene027093:CDS
CTACCTTGAGATCCATGCAT+AGG 0.630694 3.4:-48620991 None:intergenic
CTTTGCTAGTGACCAAGAGA+GGG 0.635803 3.4:+48622909 MS.gene027093:CDS
GCCCTTGAGAAGTTTCAAGA+GGG 0.636685 3.4:-48617984 None:intergenic
CGAGTTCAACTAAATCTGCA+TGG 0.636814 3.4:+48621033 MS.gene027093:CDS
AGTGTGGTAGGGTTTGACAT+TGG 0.639158 3.4:+48617727 MS.gene027093:CDS
CTAAACTGAGCATACCGTGA+AGG 0.651343 3.4:-48619560 None:intergenic
TGAGAACTGTGTTATTGCTG+TGG 0.670838 3.4:+48617753 MS.gene027093:CDS
GTGAATGAGAATTTCTATGG+TGG 0.675812 3.4:+48621693 MS.gene027093:CDS
ATATGCCCGTCTCTGCAAGT+CGG 0.684436 3.4:-48618169 None:intergenic
GCCAAAGCAGACGACAGCAG+GGG 0.693366 3.4:-48617827 None:intergenic
AAAGTGAGTTGAAATGAGTG+TGG 0.694552 3.4:+48617711 None:intergenic
CCATCTCATTCCAAGTACTG+TGG 0.696543 3.4:+48619444 MS.gene027093:CDS
ATTGCTGTGGCAAAGCATCG+CGG 0.704864 3.4:+48617766 MS.gene027093:CDS
AAACCTCGTATTCTCGCACA+CGG 0.711002 3.4:-48618875 None:intergenic
GCAAGTGAGTGTGTAGCTCG+TGG 0.714591 3.4:+48618816 MS.gene027093:CDS
AGTCCTATGTCTATGAGACG+AGG 0.719415 3.4:+48621817 MS.gene027093:CDS
GAGACGGGCATATCTTGACG+CGG 0.727755 3.4:+48618179 MS.gene027093:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTATCTTATATTTTTTAT+TGG + chr3.4:48622292-48622311 MS.gene027093:intron 10.0%
!!! TTATTATTTTTTTGAATTTC+AGG + chr3.4:48619968-48619987 MS.gene027093:intron 10.0%
!!! TTTCTAAGAAATATTAAAAA+CGG + chr3.4:48620459-48620478 MS.gene027093:intron 10.0%
!! AAAACTTATATAGATATAGA+CGG + chr3.4:48620033-48620052 MS.gene027093:intron 15.0%
!! ACACTAATATAAGAAAATAA+AGG - chr3.4:48619780-48619799 None:intergenic 15.0%
!! TAAAAAGTAAAATAGTTGTT+TGG - chr3.4:48622108-48622127 None:intergenic 15.0%
!! TCATAATTTATACCAAAAAA+TGG - chr3.4:48621106-48621125 None:intergenic 15.0%
!!! AAAAAAAAAAGGAAAAGTAT+TGG - chr3.4:48620550-48620569 None:intergenic 15.0%
!!! TTCTAAGAAATATTAAAAAC+GGG + chr3.4:48620460-48620479 MS.gene027093:intron 15.0%
!! AACATAAATCAGACAATATT+TGG - chr3.4:48620637-48620656 None:intergenic 20.0%
!! AGAATATATTATGACATAAG+TGG - chr3.4:48620383-48620402 None:intergenic 20.0%
!! ATACTGAAAATAAACCTTTA+AGG - chr3.4:48619199-48619218 None:intergenic 20.0%
!! ATGCTTACAAATATAATGTA+TGG - chr3.4:48620612-48620631 None:intergenic 20.0%
!! ATTATAAATAACAGCTCAAA+AGG - chr3.4:48619865-48619884 None:intergenic 20.0%
!! CATCACAGTTATATATTATA+AGG - chr3.4:48620311-48620330 None:intergenic 20.0%
!! CATGAAATAAGATAAAAGTT+TGG - chr3.4:48622806-48622825 None:intergenic 20.0%
!! GGATTAAAATAAAAACTTCA+TGG + chr3.4:48622647-48622666 MS.gene027093:intron 20.0%
!! TATAACTTTATCAAGTAAAG+TGG + chr3.4:48622613-48622632 MS.gene027093:intron 20.0%
!! TATTGCCATATTACATTTAT+GGG - chr3.4:48621465-48621484 None:intergenic 20.0%
!! TTATAAATAACAGCTCAAAA+GGG - chr3.4:48619864-48619883 None:intergenic 20.0%
!! TTGATAAAGTTATAGCATAT+GGG - chr3.4:48622607-48622626 None:intergenic 20.0%
!!! AGAAATTGCATTGATTTAAA+CGG - chr3.4:48619322-48619341 None:intergenic 20.0%
!!! AGTTAGAAATTTAACTTGAA+TGG + chr3.4:48620669-48620688 MS.gene027093:intron 20.0%
!!! CTTAAGATAAGCTTTTAATT+GGG + chr3.4:48623283-48623302 MS.gene027093:intron 20.0%
!!! CTTTCTTTTTCTTTTTCTTT+TGG + chr3.4:48621363-48621382 MS.gene027093:intron 20.0%
!!! CTTTTAATATGAGAATCTAA+AGG - chr3.4:48622555-48622574 None:intergenic 20.0%
!!! GGTTTTATTTTTCCATTTTT+TGG + chr3.4:48621091-48621110 MS.gene027093:intron 20.0%
!!! TCTTAAGATAAGCTTTTAAT+TGG + chr3.4:48623282-48623301 MS.gene027093:intron 20.0%
!!! TGTTTTATGAATTGTTGTTA+AGG - chr3.4:48620013-48620032 None:intergenic 20.0%
!!! TTCATTTGAAATACTTAGAT+GGG + chr3.4:48618025-48618044 MS.gene027093:CDS 20.0%
!!! TTGTCTGATTTATGTTTTAT+TGG + chr3.4:48620641-48620660 MS.gene027093:intron 20.0%
!!! TTTCATTTGAAATACTTAGA+TGG + chr3.4:48618024-48618043 MS.gene027093:CDS 20.0%
!!! TTTCTTAGAAACTTTGTTTT+AGG - chr3.4:48620450-48620469 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGTATCC+AGG + chr3.4:48620567-48620586 MS.gene027093:intron 20.0%
! AAAACTAGAAGATCTGAAAA+AGG + chr3.4:48623014-48623033 MS.gene027093:CDS 25.0%
! AAGTAAAATAGTTGTTTGGT+TGG - chr3.4:48622104-48622123 None:intergenic 25.0%
! AATCTAAAGGATATCATTAG+GGG - chr3.4:48622542-48622561 None:intergenic 25.0%
! ACAAACCCATAAATGTAATA+TGG + chr3.4:48621457-48621476 MS.gene027093:intron 25.0%
! AGAATCTAAAGGATATCATT+AGG - chr3.4:48622544-48622563 None:intergenic 25.0%
! AGATTGTCTAAGAAAAGATA+AGG + chr3.4:48621647-48621666 MS.gene027093:CDS 25.0%
! AGCATCACAATAATATATAG+TGG - chr3.4:48623260-48623279 None:intergenic 25.0%
! CTATACCTAATTCAGAAATA+GGG - chr3.4:48620721-48620740 None:intergenic 25.0%
! CTTGATAAAGTTATAGCATA+TGG - chr3.4:48622608-48622627 None:intergenic 25.0%
! GAATCTAAAGGATATCATTA+GGG - chr3.4:48622543-48622562 None:intergenic 25.0%
! GGGTACAATATTACAAATAA+AGG - chr3.4:48619301-48619320 None:intergenic 25.0%
! GTATTGCCATATTACATTTA+TGG - chr3.4:48621466-48621485 None:intergenic 25.0%
! TATGAAATATTATCTGCACA+GGG + chr3.4:48622763-48622782 MS.gene027093:intron 25.0%
! TATGTTGCATTTATTGACAT+TGG + chr3.4:48618306-48618325 MS.gene027093:CDS 25.0%
! TCAATAAATGCAACATAACT+TGG - chr3.4:48618303-48618322 None:intergenic 25.0%
! TCTATACCTAATTCAGAAAT+AGG - chr3.4:48620722-48620741 None:intergenic 25.0%
! TCTTATCCTATATATTGCAT+AGG + chr3.4:48621430-48621449 MS.gene027093:intron 25.0%
!! AAAACAAATTTTCAGAGTGA+TGG + chr3.4:48618276-48618295 MS.gene027093:CDS 25.0%
!! TATGCTCAGTTTAGAATATT+TGG + chr3.4:48619569-48619588 MS.gene027093:intron 25.0%
!! TCATTTTGCTGAAAAATTCA+AGG + chr3.4:48618443-48618462 MS.gene027093:CDS 25.0%
!! TTGCTAAAAGGAAGTATATA+TGG + chr3.4:48620863-48620882 MS.gene027093:intron 25.0%
!!! AAATTTAACTTGAATGGATC+TGG + chr3.4:48620675-48620694 MS.gene027093:intron 25.0%
!!! AATTTAACTTGAATGGATCT+GGG + chr3.4:48620676-48620695 MS.gene027093:intron 25.0%
!!! ACTTTTTTGCTGATGTAAAA+TGG + chr3.4:48619242-48619261 MS.gene027093:intron 25.0%
!!! GAAATTGCATTGATTTAAAC+GGG - chr3.4:48619321-48619340 None:intergenic 25.0%
!!! GATATTAGTCCTTTTTCATA+TGG + chr3.4:48619361-48619380 MS.gene027093:CDS 25.0%
!!! GTGTTTTTGTTTTTAGTACT+AGG + chr3.4:48619697-48619716 MS.gene027093:intron 25.0%
!!! TCATTCAAATTTTGATGCAA+TGG + chr3.4:48621199-48621218 MS.gene027093:CDS 25.0%
AAATTCTCATTCACTGCAAT+AGG - chr3.4:48621687-48621706 None:intergenic 30.0%
AACATGTTTCAAGAAGTTCT+CGG + chr3.4:48620417-48620436 MS.gene027093:intron 30.0%
AAGGCATGAAAACAATTCTT+CGG - chr3.4:48622681-48622700 None:intergenic 30.0%
ACAGTACTTACATAACTTTG+TGG - chr3.4:48621308-48621327 None:intergenic 30.0%
AGCATAGACATTATTTGAAC+TGG - chr3.4:48618066-48618085 None:intergenic 30.0%
AGTATCCTTAAACAAAGACT+TGG + chr3.4:48620194-48620213 MS.gene027093:intron 30.0%
ATATGACTTGACCATAAGAT+TGG - chr3.4:48623408-48623427 None:intergenic 30.0%
ATGAAAAAGGACTAATATCC+TGG - chr3.4:48619360-48619379 None:intergenic 30.0%
ATGGATGAGAAAGATGTTAA+GGG + chr3.4:48618588-48618607 MS.gene027093:CDS 30.0%
CATGAAATAACCTATGAGTA+TGG + chr3.4:48620504-48620523 MS.gene027093:intron 30.0%
CTAAAAAGATAAGTTCTGCT+AGG + chr3.4:48620111-48620130 MS.gene027093:intron 30.0%
CTATGAAATATTATCTGCAC+AGG + chr3.4:48622762-48622781 MS.gene027093:intron 30.0%
GAAACATGTTGAGTTACATA+GGG - chr3.4:48620407-48620426 None:intergenic 30.0%
GACTATGACAGAAAAAGATT+TGG + chr3.4:48618101-48618120 MS.gene027093:CDS 30.0%
GATTGAAGTCCATATGAAAA+AGG - chr3.4:48619373-48619392 None:intergenic 30.0%
GTCTATCCTATGCAATATAT+AGG - chr3.4:48621439-48621458 None:intergenic 30.0%
TATGACAGAAAAAGATTTGG+AGG + chr3.4:48618104-48618123 MS.gene027093:CDS 30.0%
TATGACTTGACCATAAGATT+GGG - chr3.4:48623407-48623426 None:intergenic 30.0%
TCCAAAAATTAGTTCCTTCA+CGG + chr3.4:48619546-48619565 MS.gene027093:CDS 30.0%
TGAAACATGTTGAGTTACAT+AGG - chr3.4:48620408-48620427 None:intergenic 30.0%
TGGTATATGCTAGAACATTA+TGG - chr3.4:48622231-48622250 None:intergenic 30.0%
TGTTGAATGATGAATCGAAA+CGG + chr3.4:48617800-48617819 MS.gene027093:CDS 30.0%
TTACTACATATCCACTATCT+AGG - chr3.4:48619912-48619931 None:intergenic 30.0%
! AAACCTTTAAGGATAAACCT+AGG - chr3.4:48619188-48619207 None:intergenic 30.0%
! AGCATATGGGTTCTTTAAAA+AGG - chr3.4:48622594-48622613 None:intergenic 30.0%
! ATGTTAAGGGCTTTATAACA+AGG + chr3.4:48618601-48618620 MS.gene027093:CDS 30.0%
! CGAGTTTTGCATTTACTAAA+GGG - chr3.4:48622721-48622740 None:intergenic 30.0%
! GAATTGTTGTTAAGGTATCT+AGG - chr3.4:48620005-48620024 None:intergenic 30.0%
! TACTACACTGTTTTATCCTT+TGG + chr3.4:48622176-48622195 MS.gene027093:intron 30.0%
! TCGAGTTTTGCATTTACTAA+AGG - chr3.4:48622722-48622741 None:intergenic 30.0%
! TGTTAAGGGCTTTATAACAA+GGG + chr3.4:48618602-48618621 MS.gene027093:CDS 30.0%
! TTTCTGTCATACCATTTTAC+AGG + chr3.4:48621623-48621642 MS.gene027093:intron 30.0%
!! ATTTAACTTGAATGGATCTG+GGG + chr3.4:48620677-48620696 MS.gene027093:intron 30.0%
!! TAACTGGAGTTCTTTTTCAT+GGG - chr3.4:48621745-48621764 None:intergenic 30.0%
!!! ATCTTACCTGTTCTTTTTTC+TGG - chr3.4:48623227-48623246 None:intergenic 30.0%
!!! TAAAAACGGGTTACTCTTTT+GGG + chr3.4:48620473-48620492 MS.gene027093:intron 30.0%
!!! TCTTACCTGTTCTTTTTTCT+GGG - chr3.4:48623226-48623245 None:intergenic 30.0%
!!! TTAAAAACGGGTTACTCTTT+TGG + chr3.4:48620472-48620491 MS.gene027093:intron 30.0%
!!! TTTCAGATCTTCTAGTTTTG+AGG - chr3.4:48623013-48623032 None:intergenic 30.0%
AAAGGATATCATTAGGGGTT+AGG - chr3.4:48622537-48622556 None:intergenic 35.0%
AAATCTCTTCACTTGCGATA+TGG - chr3.4:48617914-48617933 None:intergenic 35.0%
AAATGTTATGTGGGGTAAGA+TGG - chr3.4:48622386-48622405 None:intergenic 35.0%
AACAGAATTGGTACTATCTG+AGG - chr3.4:48621246-48621265 None:intergenic 35.0%
AACAGCTCTTCAACACATAT+CGG + chr3.4:48622884-48622903 MS.gene027093:intron 35.0%
AAGAGTTAAGTCACTTAAGC+AGG - chr3.4:48621341-48621360 None:intergenic 35.0%
AAGTGAAGAGATTTATAGGC+AGG + chr3.4:48617920-48617939 MS.gene027093:CDS 35.0%
ACATGTTTCAAGAAGTTCTC+GGG + chr3.4:48620418-48620437 MS.gene027093:intron 35.0%
ACTCACTTGCATTCAACTTT+CGG - chr3.4:48618806-48618825 None:intergenic 35.0%
ACTTGAAGGGTGAAAAACAA+CGG - chr3.4:48622462-48622481 None:intergenic 35.0%
AGAGTTAAGTCACTTAAGCA+GGG - chr3.4:48621340-48621359 None:intergenic 35.0%
AGATCTAGAGATCAATGAGT+TGG - chr3.4:48622263-48622282 None:intergenic 35.0%
AGTGGATATGTAGTAAGACA+TGG + chr3.4:48619916-48619935 MS.gene027093:intron 35.0%
ATAACATTTGCACTTCCTTG+TGG + chr3.4:48622397-48622416 MS.gene027093:intron 35.0%
ATAACCTATGAGTATGGTGT+CGG + chr3.4:48620510-48620529 MS.gene027093:intron 35.0%
ATCAGACACTCGATATTTAG+CGG - chr3.4:48618570-48618589 None:intergenic 35.0%
ATCCCTTCACAAATTGCATA+TGG - chr3.4:48619026-48619045 None:intergenic 35.0%
ATCGCTTCCATTTAACAACA+TGG - chr3.4:48618958-48618977 None:intergenic 35.0%
ATGTTGTTAAATGGAAGCGA+TGG + chr3.4:48618957-48618976 MS.gene027093:intron 35.0%
ATGTTGTTGTGTGAATCCAA+AGG - chr3.4:48622195-48622214 None:intergenic 35.0%
ATTTATAGGCAGGAGATTTC+TGG + chr3.4:48617930-48617949 MS.gene027093:CDS 35.0%
CAAAGAAAAGAAGAACACCT+TGG + chr3.4:48621794-48621813 MS.gene027093:CDS 35.0%
CAGCAAAAAAGTAATAGCAG+TGG - chr3.4:48619234-48619253 None:intergenic 35.0%
CAGCTACAGAAATAGTAGAT+TGG - chr3.4:48623094-48623113 None:intergenic 35.0%
GAACAGGTAAGATAAATAGC+AGG + chr3.4:48623234-48623253 MS.gene027093:intron 35.0%
GAATCAATAGCACAAGAATG+TGG - chr3.4:48620898-48620917 None:intergenic 35.0%
GAATCTTGCATCTGGATTAT+TGG + chr3.4:48618635-48618654 MS.gene027093:CDS 35.0%
GAATTTGAGAATCTTGCATC+TGG + chr3.4:48618627-48618646 MS.gene027093:CDS 35.0%
GATAATAATGTACTCACTGC+TGG - chr3.4:48618759-48618778 None:intergenic 35.0%
GATGGATGAGAAAGATGTTA+AGG + chr3.4:48618587-48618606 MS.gene027093:CDS 35.0%
GCAATTTCTCATGTTTGTTC+AGG + chr3.4:48619333-48619352 MS.gene027093:intron 35.0%
GCAGTGAATGAGAATTTCTA+TGG + chr3.4:48621690-48621709 MS.gene027093:CDS 35.0%
GTATAGACTTCATTGCTATG+AGG + chr3.4:48620735-48620754 MS.gene027093:intron 35.0%
GTGAATGAGAATTTCTATGG+TGG + chr3.4:48621693-48621712 MS.gene027093:CDS 35.0%
GTGGATATGTAGTAAGACAT+GGG + chr3.4:48619917-48619936 MS.gene027093:intron 35.0%
GTTGAATGATGAATCGAAAC+GGG + chr3.4:48617801-48617820 MS.gene027093:CDS 35.0%
TAGAAGAACTGAGATGTTTC+AGG + chr3.4:48620159-48620178 MS.gene027093:intron 35.0%
TAGACAATCTGCCTGTAAAA+TGG - chr3.4:48621637-48621656 None:intergenic 35.0%
TATGTAGTAAGACATGGGTA+TGG + chr3.4:48619922-48619941 MS.gene027093:intron 35.0%
TCAATTAATGCTTCGTTGCA+AGG - chr3.4:48618675-48618694 None:intergenic 35.0%
TCGCAAGTGAAGAGATTTAT+AGG + chr3.4:48617916-48617935 MS.gene027093:CDS 35.0%
TCGCTTCCATTTAACAACAT+GGG - chr3.4:48618957-48618976 None:intergenic 35.0%
TCTTTGTACCGAATCTCAAT+TGG - chr3.4:48623123-48623142 None:intergenic 35.0%
TGATGTGTATTCTAATGCCA+AGG + chr3.4:48618479-48618498 MS.gene027093:CDS 35.0%
TGCCATATGCAATTTGTGAA+GGG + chr3.4:48619021-48619040 MS.gene027093:intron 35.0%
TGTGCACTTTCTTTGCTAAA+AGG + chr3.4:48620851-48620870 MS.gene027093:intron 35.0%
TGTTGTTAAATGGAAGCGAT+GGG + chr3.4:48618958-48618977 MS.gene027093:intron 35.0%
TTAGAGCCCATGTTGTTAAA+TGG + chr3.4:48618948-48618967 MS.gene027093:intron 35.0%
TTGATTCAGCTACAGTAAGT+AGG + chr3.4:48621067-48621086 MS.gene027093:intron 35.0%
TTGTGGAGAATCACACTTAT+TGG - chr3.4:48621291-48621310 None:intergenic 35.0%
TTTGTTTAAGGATACTCCTC+GGG - chr3.4:48620190-48620209 None:intergenic 35.0%
! AACGAAGCATTAATTGAAGC+AGG + chr3.4:48618678-48618697 MS.gene027093:CDS 35.0%
! AAGGAAGTGCAAATGTTATG+TGG - chr3.4:48622396-48622415 None:intergenic 35.0%
! ACCGTGAAGGAACTAATTTT+TGG - chr3.4:48619550-48619569 None:intergenic 35.0%
! AGGAAGTGCAAATGTTATGT+GGG - chr3.4:48622395-48622414 None:intergenic 35.0%
! CATCTATAGAAAGCTGATTC+TGG - chr3.4:48620833-48620852 None:intergenic 35.0%
! CTTTGTTTAAGGATACTCCT+CGG - chr3.4:48620191-48620210 None:intergenic 35.0%
! TACTTTCACATGCTTTTGAC+AGG + chr3.4:48618382-48618401 MS.gene027093:CDS 35.0%
! TCAGACCAAGTCTTTGTTTA+AGG - chr3.4:48620202-48620221 None:intergenic 35.0%
! TCATATTAAGAGCGCAATAG+AGG + chr3.4:48623422-48623441 MS.gene027093:CDS 35.0%
! TTCAGATCCTTTTCCATATC+AGG - chr3.4:48617958-48617977 None:intergenic 35.0%
! TTGACCACTTCTTTTCAGAT+CGG + chr3.4:48620967-48620986 MS.gene027093:intron 35.0%
! TTTCTATGGTGGAATGACAA+TGG + chr3.4:48621704-48621723 MS.gene027093:CDS 35.0%
!! CAAGGTGTTCTTCTTTTCTT+TGG - chr3.4:48621796-48621815 None:intergenic 35.0%
!! CAATCTACTATTTCTGTAGC+TGG + chr3.4:48623092-48623111 MS.gene027093:intron 35.0%
!! CTAACTGGAGTTCTTTTTCA+TGG - chr3.4:48621746-48621765 None:intergenic 35.0%
!! CTAATTTTTGGAAACGTTCC+AGG - chr3.4:48619538-48619557 None:intergenic 35.0%
!!! AGTAAAGTGGAAGTTTTGAG+TGG + chr3.4:48622626-48622645 MS.gene027093:intron 35.0%
!!! CTTACCTGTTCTTTTTTCTG+GGG - chr3.4:48623225-48623244 None:intergenic 35.0%
!!! TTCCAACACAAGGTTTTAGA+GGG - chr3.4:48622436-48622455 None:intergenic 35.0%
AAAAAACCAAGTTGCTGCCT+AGG + chr3.4:48619168-48619187 MS.gene027093:intron 40.0%
AAGAGAGGGATGTCATATCT+AGG + chr3.4:48622923-48622942 MS.gene027093:CDS 40.0%
AAGATTGGGTCGACATTCTT+AGG - chr3.4:48623393-48623412 None:intergenic 40.0%
AAGCTATGAAGCCTAGATAG+TGG + chr3.4:48619898-48619917 MS.gene027093:intron 40.0%
AATGAACATGAACTACCACC+TGG + chr3.4:48619517-48619536 MS.gene027093:CDS 40.0%
ACCAATAACACAATCCGAGA+TGG - chr3.4:48618133-48618152 None:intergenic 40.0%
ACGGAGTATGCTTGTAAAGA+GGG + chr3.4:48620052-48620071 MS.gene027093:intron 40.0%
ACTGCAACTGCTCTTAGTTA+TGG + chr3.4:48618246-48618265 MS.gene027093:CDS 40.0%
AGAATGTCGACCCAATCTTA+TGG + chr3.4:48623394-48623413 MS.gene027093:CDS 40.0%
AGCATGCGCAATAACTAACA+AGG - chr3.4:48619666-48619685 None:intergenic 40.0%
AGCATTAATTGAAGCAGGCT+TGG + chr3.4:48618683-48618702 MS.gene027093:CDS 40.0%
AGCTTATAGACTATGAAGCC+TGG - chr3.4:48620588-48620607 None:intergenic 40.0%
AGTACCAATTCTGTTGCCAA+TGG + chr3.4:48621251-48621270 MS.gene027093:CDS 40.0%
ATAACAACCTGTATGCATGC+AGG - chr3.4:48620932-48620951 None:intergenic 40.0%
ATTCAGCTACAGTAAGTAGG+AGG + chr3.4:48621070-48621089 MS.gene027093:intron 40.0%
ATTTCTTCTGTGGAGCTAGT+TGG + chr3.4:48618717-48618736 MS.gene027093:CDS 40.0%
CAATAACTAACAAGGAAGGG+GGG - chr3.4:48619658-48619677 None:intergenic 40.0%
CATCGACAACACTGATCATT+GGG + chr3.4:48619108-48619127 MS.gene027093:intron 40.0%
CATGTTTCAAGAAGTTCTCG+GGG + chr3.4:48620419-48620438 MS.gene027093:intron 40.0%
CCAATAACACAATCCGAGAT+GGG - chr3.4:48618132-48618151 None:intergenic 40.0%
CCTAATTCAGAAATAGGGTG+AGG - chr3.4:48620716-48620735 None:intergenic 40.0%
CGAATTTCTGATAGACCAGA+TGG + chr3.4:48619403-48619422 MS.gene027093:CDS 40.0%
CGAGTTCAACTAAATCTGCA+TGG + chr3.4:48621033-48621052 MS.gene027093:CDS 40.0%
CGCAATAACTAACAAGGAAG+GGG - chr3.4:48619660-48619679 None:intergenic 40.0%
CTGCCATATGCAATTTGTGA+AGG + chr3.4:48619020-48619039 MS.gene027093:intron 40.0%
CTGCCTAGGTTTATCCTTAA+AGG + chr3.4:48619182-48619201 MS.gene027093:intron 40.0%
GAAAAGATAAGGCGAACAGA+AGG + chr3.4:48621658-48621677 MS.gene027093:CDS 40.0%
GAAGAGAAGAATCCACAGTA+GGG - chr3.4:48622506-48622525 None:intergenic 40.0%
GCAATAACTAACAAGGAAGG+GGG - chr3.4:48619659-48619678 None:intergenic 40.0%
GCGCAATAACTAACAAGGAA+GGG - chr3.4:48619661-48619680 None:intergenic 40.0%
GCTAAATATCGAGTGTCTGA+TGG + chr3.4:48618569-48618588 MS.gene027093:CDS 40.0%
GTTGTTAAATGGAAGCGATG+GGG + chr3.4:48618959-48618978 MS.gene027093:intron 40.0%
TACATTACCTGCATGCATAC+AGG + chr3.4:48620922-48620941 MS.gene027093:intron 40.0%
TAGATATGACATCCCTCTCT+TGG - chr3.4:48622924-48622943 None:intergenic 40.0%
TCACAAATTGCATATGGCAG+TGG - chr3.4:48619020-48619039 None:intergenic 40.0%
TCCAAATGGGACAAATCAGT+TGG - chr3.4:48619484-48619503 None:intergenic 40.0%
TCCCTCTTGAAACTTCTCAA+GGG + chr3.4:48617983-48618002 MS.gene027093:CDS 40.0%
TCTGGATCCTGATATGGAAA+AGG + chr3.4:48617948-48617967 MS.gene027093:CDS 40.0%
TGCAGAGAAGATTTCTTCTG+TGG + chr3.4:48618707-48618726 MS.gene027093:CDS 40.0%
TGCGCAATAACTAACAAGGA+AGG - chr3.4:48619662-48619681 None:intergenic 40.0%
TGCGTAGAAAGCTTCCAAAT+GGG - chr3.4:48619497-48619516 None:intergenic 40.0%
TTAGCAATGAAGCAGAGCAT+TGG + chr3.4:48623334-48623353 MS.gene027093:CDS 40.0%
TTGCGTAGAAAGCTTCCAAA+TGG - chr3.4:48619498-48619517 None:intergenic 40.0%
TTTACTAAAGGGTCGTGAGT+CGG - chr3.4:48622710-48622729 None:intergenic 40.0%
! ACTTGCGATATGGTTGACTT+TGG - chr3.4:48617904-48617923 None:intergenic 40.0%
! ATGCTTTTGACAGGAGCTTA+GGG + chr3.4:48618391-48618410 MS.gene027093:CDS 40.0%
! ATTGGTACTATCTGAGGTCT+CGG - chr3.4:48621240-48621259 None:intergenic 40.0%
! CAATGAGTTGGCTAGAGATA+TGG - chr3.4:48622251-48622270 None:intergenic 40.0%
! CTTGCGATATGGTTGACTTT+GGG - chr3.4:48617903-48617922 None:intergenic 40.0%
! GAGATTTCTGGATCCTGATA+TGG + chr3.4:48617942-48617961 MS.gene027093:CDS 40.0%
! GATGGTGTACTTTTCCCAAA+AGG + chr3.4:48619421-48619440 MS.gene027093:CDS 40.0%
! GGAAGTGCAAATGTTATGTG+GGG - chr3.4:48622394-48622413 None:intergenic 40.0%
! GTCATGCACAAACTTTTGTG+TGG + chr3.4:48621144-48621163 MS.gene027093:intron 40.0%
! TATGAGTATGGTGTCGGATA+CGG + chr3.4:48620516-48620535 MS.gene027093:intron 40.0%
! TGAGAACTGTGTTATTGCTG+TGG + chr3.4:48617753-48617772 MS.gene027093:CDS 40.0%
! TGGTGGATCCAATTGAGATT+CGG + chr3.4:48623112-48623131 MS.gene027093:CDS 40.0%
! TTGGAATGAGATGGCCTTTT+GGG - chr3.4:48619438-48619457 None:intergenic 40.0%
! TTTGGGAAAAGTACACCATC+TGG - chr3.4:48619421-48619440 None:intergenic 40.0%
!! ACAAATCAGTTGGCTTGGAT+GGG - chr3.4:48619474-48619493 None:intergenic 40.0%
!! ATCAAGTGCTGACACTTGAA+GGG - chr3.4:48622475-48622494 None:intergenic 40.0%
!! ATTTTTGGAAACGTTCCAGG+TGG - chr3.4:48619535-48619554 None:intergenic 40.0%
!! CCTCACCCTATTTCTGAATT+AGG + chr3.4:48620713-48620732 MS.gene027093:intron 40.0%
!! CTTCCAACACAAGGTTTTAG+AGG - chr3.4:48622437-48622456 None:intergenic 40.0%
!! TCTACTATTTCTGTAGCTGG+TGG + chr3.4:48623095-48623114 MS.gene027093:intron 40.0%
!!! AGGTTTTAGAGGGAGGTTTT+TGG - chr3.4:48622426-48622445 None:intergenic 40.0%
!!! AGTTTTGAGTGCAAATCCAG+AGG + chr3.4:48618542-48618561 MS.gene027093:CDS 40.0%
!!! GGTTTTAGAGGGAGGTTTTT+GGG - chr3.4:48622425-48622444 None:intergenic 40.0%
!!! TTCTTTTTTCTGGGGTGGAA+CGG - chr3.4:48623217-48623236 None:intergenic 40.0%
AAACACCGGAGAAGATCCTA+TGG - chr3.4:48622350-48622369 None:intergenic 45.0%
AAACATGCCATTGCAGCCTA+TGG - chr3.4:48619064-48619083 None:intergenic 45.0%
AAACCTCGTATTCTCGCACA+CGG - chr3.4:48618878-48618897 None:intergenic 45.0%
ACAACGGATCTTCCAACACA+AGG - chr3.4:48622446-48622465 None:intergenic 45.0%
ACCATCCATAGGATCTTCTC+CGG + chr3.4:48622342-48622361 MS.gene027093:intron 45.0%
ACTCCTCGTCTCATAGACAT+AGG - chr3.4:48621823-48621842 None:intergenic 45.0%
AGAACTCCAGTTAGCTCAAC+AGG + chr3.4:48621752-48621771 MS.gene027093:CDS 45.0%
AGCTCAAAAGGGAAAGCTCT+TGG - chr3.4:48619853-48619872 None:intergenic 45.0%
AGGACCGATCTGAAAAGAAG+TGG - chr3.4:48620974-48620993 None:intergenic 45.0%
AGTCCTATGTCTATGAGACG+AGG + chr3.4:48621817-48621836 MS.gene027093:CDS 45.0%
AGTGTGGTAGGGTTTGACAT+TGG + chr3.4:48617727-48617746 MS.gene027093:CDS 45.0%
ATGATCAGTGTTGTCGATGG+CGG - chr3.4:48619107-48619126 None:intergenic 45.0%
ATGGGACAAATCAGTTGGCT+TGG - chr3.4:48619479-48619498 None:intergenic 45.0%
CAGTCGTGTATCAGTCTCAA+AGG - chr3.4:48618225-48618244 None:intergenic 45.0%
CCAATGATCAGTGTTGTCGA+TGG - chr3.4:48619110-48619129 None:intergenic 45.0%
CCACAGTACTTGGAATGAGA+TGG - chr3.4:48619447-48619466 None:intergenic 45.0%
CCATCGACAACACTGATCAT+TGG + chr3.4:48619107-48619126 MS.gene027093:intron 45.0%
CCCATCTCGGATTGTGTTAT+TGG + chr3.4:48618129-48618148 MS.gene027093:CDS 45.0%
CGAAGAGAAGAATCCACAGT+AGG - chr3.4:48622507-48622526 None:intergenic 45.0%
CTAAACTGAGCATACCGTGA+AGG - chr3.4:48619563-48619582 None:intergenic 45.0%
CTAATGCCAAGGCTTGCATT+AGG + chr3.4:48618490-48618509 MS.gene027093:CDS 45.0%
CTACCTTGAGATCCATGCAT+AGG - chr3.4:48620994-48621013 None:intergenic 45.0%
CTCATAGACATAGGACTCCA+AGG - chr3.4:48621814-48621833 None:intergenic 45.0%
CTCCCTCTTGAAACTTCTCA+AGG + chr3.4:48617982-48618001 MS.gene027093:CDS 45.0%
CTTGCATTCAACTTTCGGCT+CGG - chr3.4:48618801-48618820 None:intergenic 45.0%
CTTTGCTAGTGACCAAGAGA+GGG + chr3.4:48622909-48622928 MS.gene027093:CDS 45.0%
GACGGAGTATGCTTGTAAAG+AGG + chr3.4:48620051-48620070 MS.gene027093:intron 45.0%
GATAAACCTAGGCAGCAACT+TGG - chr3.4:48619177-48619196 None:intergenic 45.0%
GCAAGTCGGTGAAGTATGAT+GGG - chr3.4:48618158-48618177 None:intergenic 45.0%
GCACATGGGGATTAAAACAC+CGG - chr3.4:48622364-48622383 None:intergenic 45.0%
GCATGGATCTCAAGGTAGTA+AGG + chr3.4:48620996-48621015 MS.gene027093:CDS 45.0%
GCCCTTGAGAAGTTTCAAGA+GGG - chr3.4:48617987-48618006 None:intergenic 45.0%
GCTGCAATGGCATGTTTATG+TGG + chr3.4:48619067-48619086 MS.gene027093:intron 45.0%
GGATATCATTAGGGGTTAGG+AGG - chr3.4:48622534-48622553 None:intergenic 45.0%
GGTATGGTAAGATGCGTACA+AGG + chr3.4:48619938-48619957 MS.gene027093:intron 45.0%
GTATCCGACACCATACTCAT+AGG - chr3.4:48620517-48620536 None:intergenic 45.0%
GTGCTTTGACTACCATCCAT+AGG + chr3.4:48622331-48622350 MS.gene027093:intron 45.0%
GTTTATGCAGTCAGACACTG+AGG + chr3.4:48621935-48621954 MS.gene027093:intron 45.0%
GTTTGCAAGAGACTGAGGAT+TGG + chr3.4:48622947-48622966 MS.gene027093:CDS 45.0%
TAGGAGTTTGCAAGAGACTG+AGG + chr3.4:48622942-48622961 MS.gene027093:CDS 45.0%
TATTCTCGCACACGGTATGT+GGG - chr3.4:48618870-48618889 None:intergenic 45.0%
TCAGTTGATCAAGGATCGCA+CGG + chr3.4:48621169-48621188 MS.gene027093:intron 45.0%
TCCACCCCAGAAAAAAGAAC+AGG + chr3.4:48623218-48623237 MS.gene027093:CDS 45.0%
TCTCATGTTTGTTCAGGTCC+AGG + chr3.4:48619339-48619358 MS.gene027093:intron 45.0%
TCTTGAAACTTCTCAAGGGC+CGG + chr3.4:48617987-48618006 MS.gene027093:CDS 45.0%
TGAAACAAAACGCCACCATC+CGG - chr3.4:48618009-48618028 None:intergenic 45.0%
TGCAAGTCGGTGAAGTATGA+TGG - chr3.4:48618159-48618178 None:intergenic 45.0%
TGTCTATGAGACGAGGAGTA+AGG + chr3.4:48621824-48621843 MS.gene027093:CDS 45.0%
TGTGTGGCTTCAGTTGATCA+AGG + chr3.4:48621160-48621179 MS.gene027093:intron 45.0%
TTACTAAAGGGTCGTGAGTC+GGG - chr3.4:48622709-48622728 None:intergenic 45.0%
TTGACGCGGCAATAATTGCT+GGG + chr3.4:48618193-48618212 MS.gene027093:CDS 45.0%
TTTCAGATCGGTCCTATGCA+TGG + chr3.4:48620979-48620998 MS.gene027093:intron 45.0%
TTTGTGAAGGGATCTCACCA+TGG + chr3.4:48619033-48619052 MS.gene027093:intron 45.0%
! AGCTAGTTGGTTCAGGTTCT+AGG + chr3.4:48618730-48618749 MS.gene027093:CDS 45.0%
! CATGCTTTTGACAGGAGCTT+AGG + chr3.4:48618390-48618409 MS.gene027093:CDS 45.0%
! CCATCTCATTCCAAGTACTG+TGG + chr3.4:48619444-48619463 MS.gene027093:CDS 45.0%
! CGTTTGAGTTTGGGCAAATG+AGG + chr3.4:48618358-48618377 MS.gene027093:CDS 45.0%
! CTTGGAATGAGATGGCCTTT+TGG - chr3.4:48619439-48619458 None:intergenic 45.0%
! GATGGTAGTCAAAGCACTAG+AGG - chr3.4:48622328-48622347 None:intergenic 45.0%
! GCATTGCAGCGTTTGAGTTT+GGG + chr3.4:48618349-48618368 MS.gene027093:CDS 45.0%
! TGCATTGCAGCGTTTGAGTT+TGG + chr3.4:48618348-48618367 MS.gene027093:CDS 45.0%
! TGCTTTTGACAGGAGCTTAG+GGG + chr3.4:48618392-48618411 MS.gene027093:CDS 45.0%
!! AGAGCATTGGCTAACAGAGA+AGG + chr3.4:48623347-48623366 MS.gene027093:CDS 45.0%
!! AGATTTGGAGGTACCCATCT+CGG + chr3.4:48618116-48618135 MS.gene027093:CDS 45.0%
!! CTCCCTCTAAAACCTTGTGT+TGG + chr3.4:48622431-48622450 MS.gene027093:intron 45.0%
!! GACAAATCAGTTGGCTTGGA+TGG - chr3.4:48619475-48619494 None:intergenic 45.0%
!! GACTGAGGATTGGCTTTATG+AGG + chr3.4:48622957-48622976 MS.gene027093:CDS 45.0%
!! GAGGATTGGCTTTATGAGGA+CGG + chr3.4:48622961-48622980 MS.gene027093:CDS 45.0%
!! GATCAAGTGCTGACACTTGA+AGG - chr3.4:48622476-48622495 None:intergenic 45.0%
!! GCCAACTGATTTGTCCCATT+TGG + chr3.4:48619480-48619499 MS.gene027093:CDS 45.0%
!!! ACCTGTTCTTTTTTCTGGGG+TGG - chr3.4:48623222-48623241 None:intergenic 45.0%
!!! CAACACAAGGTTTTAGAGGG+AGG - chr3.4:48622433-48622452 None:intergenic 45.0%
!! ACAAAAAAAAAAAAAAAAAA+AGG - chr3.4:48620561-48620580 None:intergenic 5.0%
ACCGGAGAAGATCCTATGGA+TGG - chr3.4:48622346-48622365 None:intergenic 50.0%
AGCGCCATTGGCAACAGAAT+TGG - chr3.4:48621258-48621277 None:intergenic 50.0%
AGTACCACACCACTACACCA+TGG - chr3.4:48618988-48619007 None:intergenic 50.0%
ATACCGTGTGCGAGAATACG+AGG + chr3.4:48618872-48618891 MS.gene027093:CDS 50.0%
ATATGCCCGTCTCTGCAAGT+CGG - chr3.4:48618172-48618191 None:intergenic 50.0%
ATGTGGGGTAAGATGGCACA+TGG - chr3.4:48622379-48622398 None:intergenic 50.0%
CATTGGTCAATGCGACACTC+AGG + chr3.4:48618323-48618342 MS.gene027093:CDS 50.0%
CTCTGTCCTGTTGAGCTAAC+TGG - chr3.4:48621761-48621780 None:intergenic 50.0%
CTTGACGCGGCAATAATTGC+TGG + chr3.4:48618192-48618211 MS.gene027093:CDS 50.0%
GAATCCACAGTAGGGTTCTG+TGG - chr3.4:48622498-48622517 None:intergenic 50.0%
GATGGGAAGACCACAGTACT+TGG - chr3.4:48619457-48619476 None:intergenic 50.0%
GCGCAATAGAGGAGCTAAAC+AGG + chr3.4:48623433-48623452 MS.gene027093:CDS 50.0%
GCTTTGCTAGTGACCAAGAG+AGG + chr3.4:48622908-48622927 MS.gene027093:CDS 50.0%
GGCCCTTGAGAAGTTTCAAG+AGG - chr3.4:48617988-48618007 None:intergenic 50.0%
GGTACTATCTTCAGCGCCAT+TGG - chr3.4:48621270-48621289 None:intergenic 50.0%
GGTCCTATGCATGGATCTCA+AGG + chr3.4:48620988-48621007 MS.gene027093:CDS 50.0%
GTATTCTCGCACACGGTATG+TGG - chr3.4:48618871-48618890 None:intergenic 50.0%
TCGATATTTAGCGGTGCCTC+TGG - chr3.4:48618561-48618580 None:intergenic 50.0%
TGAGACGAGGAGTAAGGTAC+TGG + chr3.4:48621830-48621849 MS.gene027093:intron 50.0%
TGATCCACAGAACCCTACTG+TGG + chr3.4:48622491-48622510 MS.gene027093:intron 50.0%
TGTGGGGTAAGATGGCACAT+GGG - chr3.4:48622378-48622397 None:intergenic 50.0%
TTGCGCATGCTCTTCTGTCT+TGG + chr3.4:48619675-48619694 MS.gene027093:intron 50.0%
! AGTCAAAGCACTAGAGGCAG+AGG - chr3.4:48622322-48622341 None:intergenic 50.0%
! CTATCTGAGGTCTCGGACTT+AGG - chr3.4:48621233-48621252 None:intergenic 50.0%
! CTTTTGACAGGAGCTTAGGG+GGG + chr3.4:48618394-48618413 MS.gene027093:CDS 50.0%
! GCGAGAAGCAGCGGTTTTTA+GGG + chr3.4:48617848-48617867 MS.gene027093:CDS 50.0%
! GCTTTTGACAGGAGCTTAGG+GGG + chr3.4:48618393-48618412 MS.gene027093:CDS 50.0%
! TAGGGTGAGGTGTCTTGCAA+TGG - chr3.4:48620703-48620722 None:intergenic 50.0%
! TCTGTGGAGCTAGTTGGTTC+AGG + chr3.4:48618723-48618742 MS.gene027093:CDS 50.0%
!! ACTTCACCGACTTGCAGAGA+CGG + chr3.4:48618163-48618182 MS.gene027093:CDS 50.0%
!! ATTGCTGTGGCAAAGCATCG+CGG + chr3.4:48617766-48617785 MS.gene027093:CDS 50.0%
ACGCAGCCTAATGCAAGCCT+TGG - chr3.4:48618499-48618518 None:intergenic 55.0%
AGCTCAACAGGACAGAGCTG+TGG + chr3.4:48621764-48621783 MS.gene027093:CDS 55.0%
GAAACTTCTCAAGGGCCGGA+TGG + chr3.4:48617991-48618010 MS.gene027093:CDS 55.0%
GAGACGGGCATATCTTGACG+CGG + chr3.4:48618179-48618198 MS.gene027093:CDS 55.0%
GCAAGTGAGTGTGTAGCTCG+TGG + chr3.4:48618816-48618835 MS.gene027093:CDS 55.0%
GTGAAGGGATCTCACCATGG+TGG + chr3.4:48619036-48619055 MS.gene027093:intron 55.0%
GTGGGGTAAGATGGCACATG+GGG - chr3.4:48622377-48622396 None:intergenic 55.0%
TCTGCTTTGGCGAGAAGCAG+CGG + chr3.4:48617839-48617858 MS.gene027093:CDS 55.0%
! GGCGAGAAGCAGCGGTTTTT+AGG + chr3.4:48617847-48617866 MS.gene027093:CDS 55.0%
!! CTTCACCGACTTGCAGAGAC+GGG + chr3.4:48618164-48618183 MS.gene027093:CDS 55.0%
!! GATGTTTCAGGAAGTGCCCG+AGG + chr3.4:48620171-48620190 MS.gene027093:intron 55.0%
!! GGAGGTTTTTGGGAGCCACA+AGG - chr3.4:48622415-48622434 None:intergenic 55.0%
!! TCAGTGTTGTCGATGGCGGA+AGG - chr3.4:48619103-48619122 None:intergenic 55.0%
!! TTGCTGTGGCAAAGCATCGC+GGG + chr3.4:48617767-48617786 MS.gene027093:CDS 55.0%
!!! CAGCGGTTTTTAGGGTCTGC+TGG + chr3.4:48617856-48617875 MS.gene027093:CDS 55.0%
ACCCCTGCTGTCGTCTGCTT+TGG + chr3.4:48617826-48617845 MS.gene027093:CDS 60.0%
ACTTCTCAAGGGCCGGATGG+TGG + chr3.4:48617994-48618013 MS.gene027093:CDS 60.0%
ATGGGGCTGCCATGGTGTAG+TGG + chr3.4:48618976-48618995 MS.gene027093:intron 60.0%
CGCCAAAGCAGACGACAGCA+GGG - chr3.4:48617831-48617850 None:intergenic 60.0%
GCCAAAGCAGACGACAGCAG+GGG - chr3.4:48617830-48617849 None:intergenic 60.0%
GCTGCCATGGTGTAGTGGTG+TGG + chr3.4:48618981-48619000 MS.gene027093:intron 60.0%
GGTCGTGAGTCGGGACAGAA+AGG - chr3.4:48622700-48622719 None:intergenic 60.0%
TCGCCAAAGCAGACGACAGC+AGG - chr3.4:48617832-48617851 None:intergenic 60.0%
TGACAGGAGCTTAGGGGGGA+GGG + chr3.4:48618398-48618417 MS.gene027093:CDS 60.0%
TTGACAGGAGCTTAGGGGGG+AGG + chr3.4:48618397-48618416 MS.gene027093:CDS 60.0%
! TCTCACCATGGTGGCGCCAT+AGG + chr3.4:48619045-48619064 MS.gene027093:intron 60.0%
AGGGGGGAGGGACTTTGACG+AGG + chr3.4:48618410-48618429 MS.gene027093:CDS 65.0%
GGTGGCGCCATAGGCTGCAA+TGG + chr3.4:48619054-48619073 MS.gene027093:intron 65.0%
TGCAGCCTATGGCGCCACCA+TGG - chr3.4:48619053-48619072 None:intergenic 65.0%
TGGAAGCGATGGGGCTGCCA+TGG + chr3.4:48618968-48618987 MS.gene027093:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 48617724 48623485 48617724 ID=MS.gene027093
chr3.4 mRNA 48617724 48623485 48617724 ID=MS.gene027093.t1;Parent=MS.gene027093
chr3.4 exon 48617724 48618893 48617724 ID=MS.gene027093.t1.exon1;Parent=MS.gene027093.t1
chr3.4 CDS 48617724 48618893 48617724 ID=cds.MS.gene027093.t1;Parent=MS.gene027093.t1
chr3.4 exon 48619355 48619567 48619355 ID=MS.gene027093.t1.exon2;Parent=MS.gene027093.t1
chr3.4 CDS 48619355 48619567 48619355 ID=cds.MS.gene027093.t1;Parent=MS.gene027093.t1
chr3.4 exon 48620985 48621080 48620985 ID=MS.gene027093.t1.exon3;Parent=MS.gene027093.t1
chr3.4 CDS 48620985 48621080 48620985 ID=cds.MS.gene027093.t1;Parent=MS.gene027093.t1
chr3.4 exon 48621173 48621316 48621173 ID=MS.gene027093.t1.exon4;Parent=MS.gene027093.t1
chr3.4 CDS 48621173 48621316 48621173 ID=cds.MS.gene027093.t1;Parent=MS.gene027093.t1
chr3.4 exon 48621645 48621845 48621645 ID=MS.gene027093.t1.exon5;Parent=MS.gene027093.t1
chr3.4 CDS 48621645 48621845 48621645 ID=cds.MS.gene027093.t1;Parent=MS.gene027093.t1
chr3.4 exon 48622889 48623035 48622889 ID=MS.gene027093.t1.exon6;Parent=MS.gene027093.t1
chr3.4 CDS 48622889 48623035 48622889 ID=cds.MS.gene027093.t1;Parent=MS.gene027093.t1
chr3.4 exon 48623111 48623239 48623111 ID=MS.gene027093.t1.exon7;Parent=MS.gene027093.t1
chr3.4 CDS 48623111 48623239 48623111 ID=cds.MS.gene027093.t1;Parent=MS.gene027093.t1
chr3.4 exon 48623324 48623485 48623324 ID=MS.gene027093.t1.exon8;Parent=MS.gene027093.t1
chr3.4 CDS 48623324 48623485 48623324 ID=cds.MS.gene027093.t1;Parent=MS.gene027093.t1
Gene Sequence

>MS.gene027093

ATGAGTGTGGTAGGGTTTGACATTGGTAATGAGAACTGTGTTATTGCTGTGGCAAAGCATCGCGGGATTGATGTTTTGTTGAATGATGAATCGAAACGGGAAACCCCTGCTGTCGTCTGCTTTGGCGAGAAGCAGCGGTTTTTAGGGTCTGCTGGTGCTGCTTCTGCTATGATGCACCCAAAGTCAACCATATCGCAAGTGAAGAGATTTATAGGCAGGAGATTTCTGGATCCTGATATGGAAAAGGATCTGAAAATGCTCCCTCTTGAAACTTCTCAAGGGCCGGATGGTGGCGTTTTGTTTCATTTGAAATACTTAGATGGGATTCATACGTTTACGCCAGTTCAAATAATGTCTATGCTCTTTGCTCACTTGAAGACTATGACAGAAAAAGATTTGGAGGTACCCATCTCGGATTGTGTTATTGGTATCCCATCATACTTCACCGACTTGCAGAGACGGGCATATCTTGACGCGGCAATAATTGCTGGGTTGAAGCCTTTGAGACTGATACACGACTGTACTGCAACTGCTCTTAGTTATGGAATTTACAAAACAAATTTTCAGAGTGATGGTCCAAGTTATGTTGCATTTATTGACATTGGTCAATGCGACACTCAGGTCTGCATTGCAGCGTTTGAGTTTGGGCAAATGAGGATACTTTCACATGCTTTTGACAGGAGCTTAGGGGGGAGGGACTTTGACGAGGTTCTGTTTACTCATTTTGCTGAAAAATTCAAGGAACAGTACAAAATTGATGTGTATTCTAATGCCAAGGCTTGCATTAGGCTGCGTGCTGCATGTGAGAAATTGAAGAAAGTTTTGAGTGCAAATCCAGAGGCACCGCTAAATATCGAGTGTCTGATGGATGAGAAAGATGTTAAGGGCTTTATAACAAGGGAAGAATTTGAGAATCTTGCATCTGGATTATTGGAGAGAATTTCAGTACCTTGCAACGAAGCATTAATTGAAGCAGGCTTGGATGCAGAGAAGATTTCTTCTGTGGAGCTAGTTGGTTCAGGTTCTAGGATTCCAGCAGTGAGTACATTATTATCTTCTTTATTCAAGAGAGAACCGAGCCGAAAGTTGAATGCAAGTGAGTGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCTATGCTCAGTCCCACATACCGTGTGCGAGAATACGAGGTTTGTTTATTTTTAAGTCTCTTCTTATTCTATGTCTATGTTATATATTGCAGATTAGAGCCCATGTTGTTAAATGGAAGCGATGGGGCTGCCATGGTGTAGTGGTGTGGTACTTTTTTTTGACCACTGCCATATGCAATTTGTGAAGGGATCTCACCATGGTGGCGCCATAGGCTGCAATGGCATGTTTATGTGGCAGATTTTGACCTTCCGCCATCGACAACACTGATCATTGGGTTTCTAGATTCTTAGAAATGTAATTTAACAATTGTCAAAAAAACCAAGTTGCTGCCTAGGTTTATCCTTAAAGGTTTATTTTCAGTATTTAAATTATCTTCCACTGCTATTACTTTTTTGCTGATGTAAAATGGAATTTTTGTTATTTTGATTTCTGATTGATATTGCCTTTATTTGTAATATTGTACCCGTTTAAATCAATGCAATTTCTCATGTTTGTTCAGGTCCAGGATATTAGTCCTTTTTCATATGGACTTCAATCAGATAAAGTTCGAATTTCTGATAGACCAGATGGTGTACTTTTCCCAAAAGGCCATCTCATTCCAAGTACTGTGGTCTTCCCATCCAAGCCAACTGATTTGTCCCATTTGGAAGCTTTCTACGCAAATGAACATGAACTACCACCTGGAACGTTTCCAAAAATTAGTTCCTTCACGGTATGCTCAGTTTAGAATATTTGGCTAATGTGATAAAGTTAAATTTTCTTCTGCGAATGTTTTATTTGTTATGTATTTCTTCTCACTCCCCCCTTCCTTGTTAGTTATTGCGCATGCTCTTCTGTCTTGGTGTTTTTGTTTTTAGTACTAGGCGTGTAGTATAGCTTCTATGTGAGATATTTTATTATGTAAATCTGTGAGCTTTTTTACCTTTATTTTCTTATATTAGTGTTTAAATCGACAGAAAAGTTTGTGTAGTAGATATTTTCATCATTAGCACAACCAAGAGCTTTCCCTTTTGAGCTGTTATTTATAATAATCTATTTATAGAAGCTATGAAGCCTAGATAGTGGATATGTAGTAAGACATGGGTATGGTAAGATGCGTACAAGGATTATTATTATTATTTTTTTGAATTTCAGGATACTATATAGCCTAGATACCTTAACAACAATTCATAAAACAAAAACTTATATAGATATAGACGGAGTATGCTTGTAAAGAGGGATACATTGATCATTCTGTAGTAGTATATCACGCTTTCTAAAAAGATAAGTTCTGCTAGGATATTATCAACAAAAGTACATTTAGTAGAAGAACTGAGATGTTTCAGGAAGTGCCCGAGGAGTATCCTTAAACAAAGACTTGGTCTGATACAACACATATAACTTAACAAATTTTATAGAACAAACAATTTGTGTAGATGTAGAATGTTTGTAAAAGAACATACACTCATCATTCCTTATAATATATAACTGTGATGATCACAATTTATAAAAAGATACTTGTGATCATAACTGAAATAAGAGTTTCCACTTATGTCATAATATATTCTACCCTATGTAACTCAACATGTTTCAAGAAGTTCTCGGGGAGTATCCTAAAACAAAGTTTCTAAGAAATATTAAAAACGGGTTACTCTTTTGGGACATGTATCATGAAATAACCTATGAGTATGGTGTCGGATACGGATACAACACCAATACTTTTCCTTTTTTTTTTTTTTTTTTTGTGTATCCAGGCTTCATAGTCTATAAGCTGCCATACATTATATTTGTAAGCATCTCCAAATATTGTCTGATTTATGTTTTATTGGCATCAAGTTAGAAATTTAACTTGAATGGATCTGGGGCCATTGCAAGACACCTCACCCTATTTCTGAATTAGGTATAGACTTCATTGCTATGAGGTCTGTGATTATTGCTTGTTCTGACATCAAAGAAAGCTAATGTTGTAAAACTAATTATGCATTAGAATAAAAGCCAGAATCAGCTTTCTATAGATGTGCACTTTCTTTGCTAAAAGGAAGTATATATGGTAGATTTAGCCACATTCTTGTGCTATTGATTCAGTGTACATTACCTGCATGCATACAGGTTGTTATATGCTTACACATTTGTTGACCACTTCTTTTCAGATCGGTCCTATGCATGGATCTCAAGGTAGTAAGGCAAAAGTTAAAGTTCGAGTTCAACTAAATCTGCATGGCATTTTCAGTATTGATTCAGCTACAGTAAGTAGGAGGTTTTATTTTTCCATTTTTTGGTATAAATTATGATTTTTTCTGAGACATCTAGTCATGCACAAACTTTTGTGTGGCTTCAGTTGATCAAGGATCGCACGGATGATCATCATTCAAATTTTGATGCAATGGATGTTGATCCTAAGTCCGAGACCTCAGATAGTACCAATTCTGTTGCCAATGGCGCTGAAGATAGTACCAATAAGTGTGATTCTCCACAAAGTTATGTAAGTACTGTCATGTTAATCCCTGCTTAAGTGACTTAACTCTTTTCTTTCTTTTTCTTTTTCTTTTGGAGAGATATCAGATGTTAGAGATTTCTAGTTTTAGTCGTCTTAACTCTTATCCTATATATTGCATAGGATAGACAAACCCATAAATGTAATATGGCAATACTTTTTTATGACAAATTCTGAGACATCTGTTATGACTGACTTTCACAATCACTATAGTATGCTTAGTTTTTTTATTTTATTTTATCTTGTAGTGATAGTTTTGATTGTAGATATGTTTTTTTTAAGTAAATAACAGTTTTTCTGTCATACCATTTTACAGGCAGATTGTCTAAGAAAAGATAAGGCGAACAGAAGGATTCCTATTGCAGTGAATGAGAATTTCTATGGTGGAATGACAATGGAAGAGATTTCTGAAGCCCATGAAAAAGAACTCCAGTTAGCTCAACAGGACAGAGCTGTGGAGCTAACCAAAGAAAAGAAGAACACCTTGGAGTCCTATGTCTATGAGACGAGGAGTAAGGTACTGGTTAAAAATATAAATAAGACGCAGTTGACTAATTTCTTTGATTCATGATACTTGTTTATGCTGAGTCAAGAAAAACGATACTTGTTTATGCAGTCAGACACTGAGGTTTTGAGTGATTGTGTTTTCATTTTATAATTTTTAAAAGCAATTTTAAAAATCTGTTTCAGATCAAGTGTTGTCGGTTTTGGCTTTTTACTTTTAAAAATTTGAAATAAGAAACTGTTTTGTAAAACATTTTTAGAAAACATACCAACCAAACAACTATTTTACTTTTTAAAAACAGAAAATAGTTTTAAAATGCAGTGATTAAAAAGACATGAACTTTACTACACTGTTTTATCCTTTGGATTCACACAACAACATTGATTAATTGACACCATAATGTTCTAGCATATACCATATCTCTAGCCAACTCATTGATCTCTAGATCTTTCTTAATAGATTATCTTATATTTTTTATTGGTCTTCCTCTGCCTCTAGTGCTTTGACTACCATCCATAGGATCTTCTCCGGTGTTTTAATCCCCATGTGCCATCTTACCCCACATAACATTTGCACTTCCTTGTGGCTCCCAAAAACCTCCCTCTAAAACCTTGTGTTGGAAGATCCGTTGTTTTTCACCCTTCAAGTGTCAGCACTTGATCCACAGAACCCTACTGTGGATTCTTCTCTTCGCTTTCCTCCTAACCCCTAATGATATCCTTTAGATTCTCATATTAAAAGAAAAATGTTAGATGCTCCTTTTTAAAGAACCCATATGCTATAACTTTATCAAGTAAAGTGGAAGTTTTGAGTGGATTAAAATAAAAACTTCATGGTTTAATTACCGAAGAATTGTTTTCATGCCTTTCTGTCCCGACTCACGACCCTTTAGTAAATGCAAAACTCGAACTGCTTAGCTGTTACAATACTATGAAATATTATCTGCACAGGGTCTCAAATTTCAAATTTCCAAACTTTTATCTTATTTCATGCTACTGATTTTATGCATGCATTTGAAGATTCTGTTAATTAAATTAATTTGCATACATAAACAGCTCTTCAACACATATCGGAGCTTTGCTAGTGACCAAGAGAGGGATGTCATATCTAGGAGTTTGCAAGAGACTGAGGATTGGCTTTATGAGGACGGTGATGATGAAACTGAACACGCTTATACCTCAAAACTAGAAGATCTGAAAAAGGTATTTTTTTTTTGCTTTTCTATTTTCAATGTTTCTCTTGTTATACTTATTGTTTCCAATCTACTATTTCTGTAGCTGGTGGATCCAATTGAGATTCGGTACAAAGATGATGAAGAAAGAACACAAGCTATAAATGATTTATCAAAATTCATTTCAGATATTCGCAAGTTTGCAGATTCCGTTCCACCCCAGAAAAAAGAACAGGTAAGATAAATAGCAGGCCACTATATATTATTGTGATGCTGCTCTTAAGATAAGCTTTTAATTGGGATTTTATTTTATTTTCAGATCATTGATATTAGCAATGAAGCAGAGCATTGGCTAACAGAGAAGGTGCAACAACAAGAATCTTATCCTAAGAATGTCGACCCAATCTTATGGTCAAGTCATATTAAGAGCGCAATAGAGGAGCTAAACAGGTATAATGCTTACCCTTTCTGTTTTCCTTAA
Protein sequence

>MS.gene027093.t1

MSVVGFDIGNENCVIAVAKHRGIDVLLNDESKRETPAVVCFGEKQRFLGSAGAASAMMHPKSTISQVKRFIGRRFLDPDMEKDLKMLPLETSQGPDGGVLFHLKYLDGIHTFTPVQIMSMLFAHLKTMTEKDLEVPISDCVIGIPSYFTDLQRRAYLDAAIIAGLKPLRLIHDCTATALSYGIYKTNFQSDGPSYVAFIDIGQCDTQVCIAAFEFGQMRILSHAFDRSLGGRDFDEVLFTHFAEKFKEQYKIDVYSNAKACIRLRAACEKLKKVLSANPEAPLNIECLMDEKDVKGFITREEFENLASGLLERISVPCNEALIEAGLDAEKISSVELVGSGSRIPAVSTLLSSLFKREPSRKLNASECVARGCALQCAMLSPTYRVREYEVQDISPFSYGLQSDKVRISDRPDGVLFPKGHLIPSTVVFPSKPTDLSHLEAFYANEHELPPGTFPKISSFTIGPMHGSQGSKAKVKVRVQLNLHGIFSIDSATLIKDRTDDHHSNFDAMDVDPKSETSDSTNSVANGAEDSTNKCDSPQSYADCLRKDKANRRIPIAVNENFYGGMTMEEISEAHEKELQLAQQDRAVELTKEKKNTLESYVYETRSKLFNTYRSFASDQERDVISRSLQETEDWLYEDGDDETEHAYTSKLEDLKKLVDPIEIRYKDDEERTQAINDLSKFISDIRKFADSVPPQKKEQIIDISNEAEHWLTEKVQQQESYPKNVDPILWSSHIKSAIEELNRYNAYPFCFP