Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027120.t1 | XP_003600054.1 | 99.6 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 5.90E-139 | 503.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027120.t1 | Q5M759 | 83.6 | 250 | 41 | 0 | 1 | 250 | 1 | 250 | 1.1e-120 | 434.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027120.t1 | G7IXK4 | 99.6 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 4.3e-139 | 503.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59808 | MS.gene027120 | PPI |
| MS.gene72906 | MS.gene027120 | PPI |
| MS.gene77803 | MS.gene027120 | PPI |
| MS.gene028008 | MS.gene027120 | PPI |
| MS.gene94059 | MS.gene027120 | PPI |
| MS.gene016363 | MS.gene027120 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027120.t1 | MTR_3g051210 | 99.602 | 251 | 1 | 0 | 1 | 251 | 1 | 251 | 0.0 | 512 |
| MS.gene027120.t1 | MTR_7g033650 | 97.610 | 251 | 6 | 0 | 1 | 251 | 1 | 251 | 0.0 | 500 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027120.t1 | AT4G27040 | 83.600 | 250 | 41 | 0 | 1 | 250 | 1 | 250 | 2.30e-159 | 442 |
| MS.gene027120.t1 | AT4G27040 | 83.600 | 250 | 41 | 0 | 1 | 250 | 1 | 250 | 2.30e-159 | 442 |
| MS.gene027120.t1 | AT4G27040 | 83.600 | 250 | 41 | 0 | 1 | 250 | 1 | 250 | 2.30e-159 | 442 |
| MS.gene027120.t1 | AT4G27040 | 83.600 | 250 | 41 | 0 | 1 | 250 | 1 | 250 | 2.30e-159 | 442 |
| MS.gene027120.t1 | AT4G27040 | 83.600 | 250 | 41 | 0 | 1 | 250 | 1 | 250 | 2.30e-159 | 442 |
| MS.gene027120.t1 | AT4G27040 | 83.600 | 250 | 41 | 0 | 1 | 250 | 1 | 250 | 2.30e-159 | 442 |
Find 56 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGGATCAATACAAGAAAT+TGG | 0.228131 | 3.4:+48415242 | MS.gene027120:CDS |
| TGGCATCGAATAAGGGGTTT+TGG | 0.249465 | 3.4:+48416466 | MS.gene027120:CDS |
| AGATCCATTGGCATCGAATA+AGG | 0.254143 | 3.4:+48416458 | MS.gene027120:CDS |
| AAGGAGGCTATCTTGGACTT+CGG | 0.377807 | 3.4:+48418321 | MS.gene027120:CDS |
| GATCCATTGGCATCGAATAA+GGG | 0.394041 | 3.4:+48416459 | MS.gene027120:CDS |
| GTTTGTAATCCTCCAATTCC+AGG | 0.394819 | 3.4:-48415207 | None:intergenic |
| AGGAGGCTATCTTGGACTTC+GGG | 0.399358 | 3.4:+48418322 | MS.gene027120:CDS |
| AAGACGGAAAACGACGGTAT+TGG | 0.400764 | 3.4:+48418523 | MS.gene027120:CDS |
| AATTCCTGTCAAAGACGAAA+TGG | 0.400844 | 3.4:-48418562 | None:intergenic |
| TGGGCAGAGCTATTGGGAAT+TGG | 0.413008 | 3.4:+48416486 | MS.gene027120:CDS |
| AAGTAGAAAGGAGGCTATCT+TGG | 0.416065 | 3.4:+48418314 | MS.gene027120:CDS |
| ATGAGAAGGAGACCTGGAAT+TGG | 0.416762 | 3.4:+48415195 | MS.gene027120:CDS |
| ATTCCTGTCAAAGACGAAAT+GGG | 0.437105 | 3.4:-48418561 | None:intergenic |
| TGGTCTTTGTTCAGCTCAGT+TGG | 0.452013 | 3.4:-48417121 | None:intergenic |
| TCACAAATATTTCAGGTTCT+CGG | 0.456872 | 3.4:+48417046 | MS.gene027120:intron |
| TATTTCAGGTTCTCGGTAGC+GGG | 0.477130 | 3.4:+48417053 | MS.gene027120:intron |
| AGAAGGAGACCTGGAATTGG+AGG | 0.477653 | 3.4:+48415198 | MS.gene027120:CDS |
| TCAAATTGTGGACATTTGCT+TGG | 0.478737 | 3.4:+48416716 | MS.gene027120:CDS |
| TAATGTATCTAGTGCATCAA+TGG | 0.485168 | 3.4:-48418350 | None:intergenic |
| AGGGATCAATACAAGAAATT+GGG | 0.488849 | 3.4:+48415243 | MS.gene027120:CDS |
| ATATTTCAGGTTCTCGGTAG+CGG | 0.490149 | 3.4:+48417052 | MS.gene027120:intron |
| GGTGATTTCTATTATGAACT+TGG | 0.493886 | 3.4:+48416507 | MS.gene027120:CDS |
| CATGAAATGTGTGCTAAAGT+TGG | 0.496026 | 3.4:+48416432 | MS.gene027120:CDS |
| ATTGATCAGTCCACCGTTGA+GGG | 0.515451 | 3.4:-48416748 | None:intergenic |
| TGAAATTCTTGAACTTGCCC+AGG | 0.525315 | 3.4:+48417147 | MS.gene027120:CDS |
| GGGTTTGAAGTTATTTCTGT+TGG | 0.525591 | 3.4:+48417073 | MS.gene027120:CDS |
| GATCAGAACTGATATGATGA+AGG | 0.529766 | 3.4:+48415281 | MS.gene027120:CDS |
| TTCAAGCTGAGAACGGAAAG+TGG | 0.530325 | 3.4:-48415313 | None:intergenic |
| CTCCGTTTACCTCAGGGTCA+AGG | 0.535140 | 3.4:+48418274 | MS.gene027120:intron |
| TGAAACTGTGATCTGAATGC+AGG | 0.546795 | 3.4:-48416411 | None:intergenic |
| AGCACGCAGGCAATCATCCT+CGG | 0.550043 | 3.4:-48416829 | None:intergenic |
| ATTGATGATGGCCACAAAGA+CGG | 0.551263 | 3.4:+48418507 | MS.gene027120:CDS |
| ATCCATTGGCATCGAATAAG+GGG | 0.567315 | 3.4:+48416460 | MS.gene027120:CDS |
| TTCAAAATGAGAAGGAGACC+TGG | 0.569477 | 3.4:+48415189 | None:intergenic |
| TACAAACAGCTGCAGCAGCA+AGG | 0.577400 | 3.4:+48415223 | MS.gene027120:CDS |
| ACAAACAGCTGCAGCAGCAA+GGG | 0.585582 | 3.4:+48415224 | MS.gene027120:CDS |
| TTCCTGTCAAAGACGAAATG+GGG | 0.586176 | 3.4:-48418560 | None:intergenic |
| GCGTGCTATCAGTAAGCTGA+AGG | 0.586793 | 3.4:+48416845 | MS.gene027120:CDS |
| CAAAATCTTCAAGCTGAGAA+CGG | 0.590413 | 3.4:-48415320 | None:intergenic |
| TAAAGTTGGAGTAGATCCAT+TGG | 0.590906 | 3.4:+48416446 | MS.gene027120:CDS |
| GATTGATCAGTCCACCGTTG+AGG | 0.591636 | 3.4:-48416749 | None:intergenic |
| TGACTGTCGATGAAGTAGAA+AGG | 0.593662 | 3.4:+48418302 | MS.gene027120:CDS |
| AACCCCTTATTCGATGCCAA+TGG | 0.602728 | 3.4:-48416462 | None:intergenic |
| GGACTTGCAATGATTGATGA+TGG | 0.603574 | 3.4:+48418495 | MS.gene027120:CDS |
| TCAGCTCAGTTGGAACCGAA+CGG | 0.627094 | 3.4:-48417111 | None:intergenic |
| GAAACTGTGATCTGAATGCA+GGG | 0.646444 | 3.4:-48416410 | None:intergenic |
| CAAGTTCAAGAATTTCATTG+TGG | 0.649563 | 3.4:-48417141 | None:intergenic |
| TTGATCAGTCCACCGTTGAG+GGG | 0.651882 | 3.4:-48416747 | None:intergenic |
| CTAGACAGGAGTTCAAATTG+TGG | 0.654031 | 3.4:+48416704 | MS.gene027120:intron |
| TCCTGTCAAAGACGAAATGG+GGG | 0.657833 | 3.4:-48418559 | None:intergenic |
| GCTACTAGACCCCTCAACGG+TGG | 0.670205 | 3.4:+48416738 | MS.gene027120:CDS |
| GCCACAAAGACGGAAAACGA+CGG | 0.674550 | 3.4:+48418517 | MS.gene027120:CDS |
| CTGTCGATGAAGTAGAAAGG+AGG | 0.681421 | 3.4:+48418305 | MS.gene027120:CDS |
| TTGGCTACTAGACCCCTCAA+CGG | 0.700160 | 3.4:+48416735 | MS.gene027120:CDS |
| TGATTGTGGAGTTGTTTCCG+AGG | 0.704088 | 3.4:+48416812 | MS.gene027120:CDS |
| TCAGCTTACTGATAGCACGC+AGG | 0.720093 | 3.4:-48416842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTGATTTTTAATTC+TGG | + | chr3.4:48415420-48415439 | MS.gene027120:intron | 10.0% |
| !!! | AAAAATTGATTTTTAATTCT+GGG | + | chr3.4:48415421-48415440 | MS.gene027120:intron | 10.0% |
| !!! | CTTTATTTTATTTTTTGTTA+TGG | + | chr3.4:48417525-48417544 | MS.gene027120:intron | 10.0% |
| !!! | TTATTTTTTTTATGATTGAT+TGG | + | chr3.4:48415387-48415406 | MS.gene027120:intron | 10.0% |
| !! | AAATAGTAATAGTCAAAAAT+TGG | - | chr3.4:48416896-48416915 | None:intergenic | 15.0% |
| !! | ATAAAAAAAATAAAGAGTTG+GGG | - | chr3.4:48415380-48415399 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAAATCTGGAA+TGG | - | chr3.4:48416611-48416630 | None:intergenic | 15.0% |
| !! | ATAGATTGAAGATTAAATAA+TGG | - | chr3.4:48417793-48417812 | None:intergenic | 15.0% |
| !! | CATAAAAAAAATAAAGAGTT+GGG | - | chr3.4:48415381-48415400 | None:intergenic | 15.0% |
| !! | TAAAAATTATTGTCAAATAG+CGG | - | chr3.4:48415613-48415632 | None:intergenic | 15.0% |
| !! | TAATCATTAATTGCAAAAAA+AGG | - | chr3.4:48416336-48416355 | None:intergenic | 15.0% |
| !! | TCATAAAAAAAATAAAGAGT+TGG | - | chr3.4:48415382-48415401 | None:intergenic | 15.0% |
| !! | TTATTACATGTTATCAAATA+AGG | - | chr3.4:48418419-48418438 | None:intergenic | 15.0% |
| !! | TTTATATAAATTGTTACTAG+AGG | + | chr3.4:48417732-48417751 | MS.gene027120:intron | 15.0% |
| !!! | CAATAATTTTTACTAAATAG+CGG | + | chr3.4:48415621-48415640 | MS.gene027120:intron | 15.0% |
| !!! | TTTATTTTTTGTTATGGAAA+TGG | + | chr3.4:48417531-48417550 | MS.gene027120:intron | 15.0% |
| !!! | TTTTTGACTATTACTATTTA+TGG | + | chr3.4:48416897-48416916 | MS.gene027120:intron | 15.0% |
| !! | AATATCTCATTATGAAAATC+CGG | + | chr3.4:48417889-48417908 | MS.gene027120:intron | 20.0% |
| !! | TTGTTTAAAAATTGCAACTA+TGG | - | chr3.4:48416568-48416587 | None:intergenic | 20.0% |
| !!! | AATAGTCAAAAATTGGTTTA+AGG | - | chr3.4:48416889-48416908 | None:intergenic | 20.0% |
| !!! | ATAGTCAAAAATTGGTTTAA+GGG | - | chr3.4:48416888-48416907 | None:intergenic | 20.0% |
| ! | AAACAGTATAGTTATGGTTT+AGG | + | chr3.4:48417344-48417363 | MS.gene027120:intron | 25.0% |
| ! | AAAGATAACATCAACAAACT+AGG | - | chr3.4:48417630-48417649 | None:intergenic | 25.0% |
| ! | AAGATAACATCAACAAACTA+GGG | - | chr3.4:48417629-48417648 | None:intergenic | 25.0% |
| ! | AAGTAACATGTAAATATCTG+TGG | + | chr3.4:48417699-48417718 | MS.gene027120:intron | 25.0% |
| ! | AATATTAACCTCAAATTTCG+TGG | + | chr3.4:48418437-48418456 | MS.gene027120:intron | 25.0% |
| ! | AATGATGTTGGTATAATGTT+TGG | + | chr3.4:48416174-48416193 | MS.gene027120:intron | 25.0% |
| ! | ACTATTACTATTTATGGATG+TGG | + | chr3.4:48416903-48416922 | MS.gene027120:intron | 25.0% |
| ! | ATGATGTTGGTATAATGTTT+GGG | + | chr3.4:48416175-48416194 | MS.gene027120:intron | 25.0% |
| ! | ATTTCTATTATGAACTTGGT+TGG | + | chr3.4:48416511-48416530 | MS.gene027120:intron | 25.0% |
| ! | CTGCAATTCAACAAATAATT+AGG | + | chr3.4:48417850-48417869 | MS.gene027120:intron | 25.0% |
| ! | GATATCAAACAGTATAGTTA+TGG | + | chr3.4:48417338-48417357 | MS.gene027120:intron | 25.0% |
| ! | GATTAAATAACGCTAATTGT+TGG | + | chr3.4:48416356-48416375 | MS.gene027120:intron | 25.0% |
| ! | TATGTGCTACATCTTAAATT+CGG | - | chr3.4:48415925-48415944 | None:intergenic | 25.0% |
| ! | TCCTGATGTATTTATAACTA+GGG | - | chr3.4:48415958-48415977 | None:intergenic | 25.0% |
| !! | ATTTCACTCTTTTCTTAGAA+TGG | + | chr3.4:48416652-48416671 | MS.gene027120:intron | 25.0% |
| !! | TGTGTGCTTTTATATACTAT+TGG | + | chr3.4:48418067-48418086 | MS.gene027120:intron | 25.0% |
| !! | TTGGTACTAATATTTGCTTT+TGG | + | chr3.4:48418025-48418044 | MS.gene027120:intron | 25.0% |
| !!! | AGCTTAAATTTTAGAAGTTG+TGG | + | chr3.4:48415520-48415539 | MS.gene027120:intron | 25.0% |
| !!! | TGGTTGGATTGATTTATTTT+AGG | + | chr3.4:48417376-48417395 | MS.gene027120:intron | 25.0% |
| AAAGAAAAAACTTGTCCGTT+CGG | + | chr3.4:48417096-48417115 | MS.gene027120:CDS | 30.0% | |
| AAGGGATCAATACAAGAAAT+TGG | + | chr3.4:48415242-48415261 | MS.gene027120:CDS | 30.0% | |
| AGGGATCAATACAAGAAATT+GGG | + | chr3.4:48415243-48415262 | MS.gene027120:CDS | 30.0% | |
| ATAAGCTGAAAACAACTCAA+AGG | - | chr3.4:48417443-48417462 | None:intergenic | 30.0% | |
| ATCTTTATAGCTTATGAGTG+TGG | + | chr3.4:48417644-48417663 | MS.gene027120:intron | 30.0% | |
| ATGTATTTATAACTAGGGCA+TGG | - | chr3.4:48415953-48415972 | None:intergenic | 30.0% | |
| ATGTGCTACATCTTAAATTC+GGG | - | chr3.4:48415924-48415943 | None:intergenic | 30.0% | |
| ATTCTGACATGCATGTATTT+CGG | + | chr3.4:48416945-48416964 | MS.gene027120:intron | 30.0% | |
| CAAGTTCAAGAATTTCATTG+TGG | - | chr3.4:48417144-48417163 | None:intergenic | 30.0% | |
| CTCCTATTAAATTCTATGTC+TGG | - | chr3.4:48415892-48415911 | None:intergenic | 30.0% | |
| CTGACATATCATAAACCAAA+CGG | + | chr3.4:48417406-48417425 | MS.gene027120:intron | 30.0% | |
| GACCAGACATAGAATTTAAT+AGG | + | chr3.4:48415887-48415906 | MS.gene027120:intron | 30.0% | |
| GGTGATTTCTATTATGAACT+TGG | + | chr3.4:48416507-48416526 | MS.gene027120:CDS | 30.0% | |
| GTCCTGATGTATTTATAACT+AGG | - | chr3.4:48415959-48415978 | None:intergenic | 30.0% | |
| TAATGTATCTAGTGCATCAA+TGG | - | chr3.4:48418353-48418372 | None:intergenic | 30.0% | |
| TATCCACATCATACAATTAC+AGG | - | chr3.4:48417287-48417306 | None:intergenic | 30.0% | |
| TGAACAAAACTCTATTGACA+TGG | - | chr3.4:48416219-48416238 | None:intergenic | 30.0% | |
| TGATATGTCAATTTAAGCAC+CGG | + | chr3.4:48418103-48418122 | MS.gene027120:intron | 30.0% | |
| TGATGTGTCACAAATATTTC+AGG | + | chr3.4:48417039-48417058 | MS.gene027120:intron | 30.0% | |
| TTATGAAAATCCGGTACTAT+AGG | + | chr3.4:48417898-48417917 | MS.gene027120:intron | 30.0% | |
| ! | AATTTGAACTCTCTTGCTAT+TGG | + | chr3.4:48417995-48418014 | MS.gene027120:intron | 30.0% |
| ! | AGCACTTATTTCTCTTTGTT+TGG | + | chr3.4:48417171-48417190 | MS.gene027120:intron | 30.0% |
| ! | ATTAAGTTGTTTATCCAAGC+AGG | + | chr3.4:48417602-48417621 | MS.gene027120:intron | 30.0% |
| ! | ATTTTTACTAAATAGCGGTG+TGG | + | chr3.4:48415626-48415645 | MS.gene027120:intron | 30.0% |
| ! | TATATACTATTGGTGTTCAG+AGG | + | chr3.4:48418077-48418096 | MS.gene027120:intron | 30.0% |
| !! | AAGATTTGTTACATGCATTC+TGG | + | chr3.4:48416995-48417014 | MS.gene027120:intron | 30.0% |
| !! | GCTGTTTTCATAAATTATCC+TGG | - | chr3.4:48417479-48417498 | None:intergenic | 30.0% |
| !! | GTTTTTGCTATGAATGATGT+TGG | + | chr3.4:48416162-48416181 | MS.gene027120:intron | 30.0% |
| !! | TCACAAATATTTCAGGTTCT+CGG | + | chr3.4:48417046-48417065 | MS.gene027120:intron | 30.0% |
| !! | TGATTTTTAATTCTGGGTGT+TGG | + | chr3.4:48415427-48415446 | MS.gene027120:intron | 30.0% |
| !!! | ATGTCAATAGAGTTTTGTTC+AGG | + | chr3.4:48416218-48416237 | MS.gene027120:intron | 30.0% |
| !!! | TGTCAATAGAGTTTTGTTCA+GGG | + | chr3.4:48416219-48416238 | MS.gene027120:intron | 30.0% |
| AAAAGTCATGCAGCAAAGTT+AGG | + | chr3.4:48417756-48417775 | MS.gene027120:intron | 35.0% | |
| AAAGAGAAATAAGTGCTACC+TGG | - | chr3.4:48417168-48417187 | None:intergenic | 35.0% | |
| AAGAGAAATAAGTGCTACCT+GGG | - | chr3.4:48417167-48417186 | None:intergenic | 35.0% | |
| AATATCAGTGTTGTGGGAAA+TGG | + | chr3.4:48415653-48415672 | MS.gene027120:intron | 35.0% | |
| AATTCCTGTCAAAGACGAAA+TGG | - | chr3.4:48418565-48418584 | None:intergenic | 35.0% | |
| ATACTGAACCACTATGGTAT+TGG | + | chr3.4:48418460-48418479 | MS.gene027120:intron | 35.0% | |
| ATAGTTATGGTTTAGGCCTA+GGG | + | chr3.4:48417351-48417370 | MS.gene027120:intron | 35.0% | |
| ATGTTGGTATAATGTTTGGG+AGG | + | chr3.4:48416178-48416197 | MS.gene027120:intron | 35.0% | |
| ATTATGAGCTTTCTTGAGCA+TGG | + | chr3.4:48417261-48417280 | MS.gene027120:intron | 35.0% | |
| ATTCCTGTCAAAGACGAAAT+GGG | - | chr3.4:48418564-48418583 | None:intergenic | 35.0% | |
| ATTTGAGGACTTGAAACTTC+AGG | + | chr3.4:48416255-48416274 | MS.gene027120:intron | 35.0% | |
| CAAAATCTTCAAGCTGAGAA+CGG | - | chr3.4:48415323-48415342 | None:intergenic | 35.0% | |
| CAGAGAAGAAAAAGTGATTG+TGG | + | chr3.4:48416798-48416817 | MS.gene027120:CDS | 35.0% | |
| CATGAAATGTGTGCTAAAGT+TGG | + | chr3.4:48416432-48416451 | MS.gene027120:CDS | 35.0% | |
| GATCAGAACTGATATGATGA+AGG | + | chr3.4:48415281-48415300 | MS.gene027120:CDS | 35.0% | |
| GCCCTAGTTATAAATACATC+AGG | + | chr3.4:48415954-48415973 | MS.gene027120:intron | 35.0% | |
| GGTGAAAATATCAGTGTTGT+GGG | + | chr3.4:48415647-48415666 | MS.gene027120:intron | 35.0% | |
| GTAACAAATCTTTCAGTACG+AGG | - | chr3.4:48416987-48417006 | None:intergenic | 35.0% | |
| TAAAGTTGGAGTAGATCCAT+TGG | + | chr3.4:48416446-48416465 | MS.gene027120:CDS | 35.0% | |
| TATAGTTATGGTTTAGGCCT+AGG | + | chr3.4:48417350-48417369 | MS.gene027120:intron | 35.0% | |
| TCAAATTGTGGACATTTGCT+TGG | + | chr3.4:48416716-48416735 | MS.gene027120:CDS | 35.0% | |
| TCCTACAAATCATGTGACTT+TGG | + | chr3.4:48416017-48416036 | MS.gene027120:intron | 35.0% | |
| TGATTGCAATCATAACATGC+CGG | + | chr3.4:48416121-48416140 | MS.gene027120:intron | 35.0% | |
| TGGTGAAAATATCAGTGTTG+TGG | + | chr3.4:48415646-48415665 | MS.gene027120:intron | 35.0% | |
| TGTGCTACATCTTAAATTCG+GGG | - | chr3.4:48415923-48415942 | None:intergenic | 35.0% | |
| TTCACGAATGTGCTATATTG+CGG | + | chr3.4:48415695-48415714 | MS.gene027120:intron | 35.0% | |
| TTCAGTATCCACGAAATTTG+AGG | - | chr3.4:48418448-48418467 | None:intergenic | 35.0% | |
| TTTGAGGACTTGAAACTTCA+GGG | + | chr3.4:48416256-48416275 | MS.gene027120:intron | 35.0% | |
| ! | CAAAAATTGGTTTAAGGGCA+TGG | - | chr3.4:48416883-48416902 | None:intergenic | 35.0% |
| ! | TCCAAAGTCACATGATTTGT+AGG | - | chr3.4:48416021-48416040 | None:intergenic | 35.0% |
| ! | TCTTTTCATGCTTCACAACA+AGG | - | chr3.4:48418169-48418188 | None:intergenic | 35.0% |
| !! | CTTATTTCTATAAGCTGTCC+AGG | + | chr3.4:48417458-48417477 | MS.gene027120:intron | 35.0% |
| !! | GGGTTTGAAGTTATTTCTGT+TGG | + | chr3.4:48417073-48417092 | MS.gene027120:CDS | 35.0% |
| !! | TACTATAGGAGTTTGGTGTT+AGG | + | chr3.4:48417912-48417931 | MS.gene027120:intron | 35.0% |
| !!! | ATTTGCTTTTGGTCTTGTCT+TGG | + | chr3.4:48418036-48418055 | MS.gene027120:intron | 35.0% |
| !!! | CACAATCACTTTTTCTTCTC+TGG | - | chr3.4:48416800-48416819 | None:intergenic | 35.0% |
| !!! | GTCAATAGAGTTTTGTTCAG+GGG | + | chr3.4:48416220-48416239 | MS.gene027120:intron | 35.0% |
| AAGGCTAATCATAAGCCGTT+TGG | - | chr3.4:48417424-48417443 | None:intergenic | 40.0% | |
| AAGTAGAAAGGAGGCTATCT+TGG | + | chr3.4:48418314-48418333 | MS.gene027120:CDS | 40.0% | |
| AATCCGGTACTATAGGAGTT+TGG | + | chr3.4:48417905-48417924 | MS.gene027120:intron | 40.0% | |
| ACACCAAACTCCTATAGTAC+CGG | - | chr3.4:48417911-48417930 | None:intergenic | 40.0% | |
| ACGCTAATTGTTGGTATCAC+TGG | + | chr3.4:48416365-48416384 | MS.gene027120:intron | 40.0% | |
| AGTCTACTTCGACAATGTCA+AGG | - | chr3.4:48415851-48415870 | None:intergenic | 40.0% | |
| ATTGTCGAAGTAGACTGCAA+AGG | + | chr3.4:48415855-48415874 | MS.gene027120:intron | 40.0% | |
| CAATCACACTATGAAGCTTC+CGG | - | chr3.4:48418125-48418144 | None:intergenic | 40.0% | |
| CTACGTCAAGTTCATTCAAC+CGG | - | chr3.4:48416143-48416162 | None:intergenic | 40.0% | |
| CTAGACAGGAGTTCAAATTG+TGG | + | chr3.4:48416704-48416723 | MS.gene027120:intron | 40.0% | |
| GAAACTGTGATCTGAATGCA+GGG | - | chr3.4:48416413-48416432 | None:intergenic | 40.0% | |
| GGACTTGCAATGATTGATGA+TGG | + | chr3.4:48418495-48418514 | MS.gene027120:CDS | 40.0% | |
| GGCTGAAAATATCAGTCTTG+TGG | + | chr3.4:48415541-48415560 | MS.gene027120:intron | 40.0% | |
| GTTTGTAATCCTCCAATTCC+AGG | - | chr3.4:48415210-48415229 | None:intergenic | 40.0% | |
| TGAAACTGTGATCTGAATGC+AGG | - | chr3.4:48416414-48416433 | None:intergenic | 40.0% | |
| TGAAATTCTTGAACTTGCCC+AGG | + | chr3.4:48417147-48417166 | MS.gene027120:CDS | 40.0% | |
| TGACTGTCGATGAAGTAGAA+AGG | + | chr3.4:48418302-48418321 | MS.gene027120:CDS | 40.0% | |
| TGGCCTGTAATTGTATGATG+TGG | + | chr3.4:48417281-48417300 | MS.gene027120:intron | 40.0% | |
| TTCCTGTCAAAGACGAAATG+GGG | - | chr3.4:48418563-48418582 | None:intergenic | 40.0% | |
| TTGAGGACTTGAAACTTCAG+GGG | + | chr3.4:48416257-48416276 | MS.gene027120:intron | 40.0% | |
| ! | AGATCCATTGGCATCGAATA+AGG | + | chr3.4:48416458-48416477 | MS.gene027120:CDS | 40.0% |
| ! | AGATTTTGCTCGCAAACACA+AGG | + | chr3.4:48415335-48415354 | MS.gene027120:CDS | 40.0% |
| ! | ATCCATTGGCATCGAATAAG+GGG | + | chr3.4:48416460-48416479 | MS.gene027120:CDS | 40.0% |
| ! | GATCCATTGGCATCGAATAA+GGG | + | chr3.4:48416459-48416478 | MS.gene027120:CDS | 40.0% |
| ! | GGGCTTGCTTGAATAATTTG+AGG | + | chr3.4:48416240-48416259 | MS.gene027120:intron | 40.0% |
| ! | TAGAGACAACGCTTTGGTTT+CGG | + | chr3.4:48417937-48417956 | MS.gene027120:intron | 40.0% |
| ! | TGCCTTAACAATTTTGTGCG+CGG | - | chr3.4:48415817-48415836 | None:intergenic | 40.0% |
| !! | ATATTTCAGGTTCTCGGTAG+CGG | + | chr3.4:48417052-48417071 | MS.gene027120:intron | 40.0% |
| !! | ATTGATGATGGCCACAAAGA+CGG | + | chr3.4:48418507-48418526 | MS.gene027120:CDS | 40.0% |
| !! | TCTTGCTATTGGTCTTGTCT+TGG | + | chr3.4:48418006-48418025 | MS.gene027120:intron | 40.0% |
| AACCCCTTATTCGATGCCAA+TGG | - | chr3.4:48416465-48416484 | None:intergenic | 45.0% | |
| AAGACGGAAAACGACGGTAT+TGG | + | chr3.4:48418523-48418542 | MS.gene027120:CDS | 45.0% | |
| AAGGAGGCTATCTTGGACTT+CGG | + | chr3.4:48418321-48418340 | MS.gene027120:CDS | 45.0% | |
| AATCAATCCAACCAGACCCT+AGG | - | chr3.4:48417370-48417389 | None:intergenic | 45.0% | |
| ACATCAGTATGCAGCACCAA+GGG | - | chr3.4:48417025-48417044 | None:intergenic | 45.0% | |
| ATCAGTGTTGTGGGAAATGG+TGG | + | chr3.4:48415656-48415675 | MS.gene027120:intron | 45.0% | |
| ATCCTTGACCCTGAGGTAAA+CGG | - | chr3.4:48418279-48418298 | None:intergenic | 45.0% | |
| ATCTCGTGACTCTTGAAAGC+AGG | - | chr3.4:48417243-48417262 | None:intergenic | 45.0% | |
| ATGAGAAGGAGACCTGGAAT+TGG | + | chr3.4:48415195-48415214 | MS.gene027120:CDS | 45.0% | |
| ATTGATCAGTCCACCGTTGA+GGG | - | chr3.4:48416751-48416770 | None:intergenic | 45.0% | |
| CGAATGTGCTATATTGCGGA+CGG | + | chr3.4:48415699-48415718 | MS.gene027120:intron | 45.0% | |
| CGGAAGCTTCATAGTGTGAT+TGG | + | chr3.4:48418123-48418142 | MS.gene027120:intron | 45.0% | |
| CTGTCGATGAAGTAGAAAGG+AGG | + | chr3.4:48418305-48418324 | MS.gene027120:CDS | 45.0% | |
| CTTCGACAATGTCAAGGTAG+AGG | - | chr3.4:48415845-48415864 | None:intergenic | 45.0% | |
| GACTCTTGAAAGCAGGAAAG+TGG | - | chr3.4:48417236-48417255 | None:intergenic | 45.0% | |
| GTCCGCGCACAAAATTGTTA+AGG | + | chr3.4:48415812-48415831 | MS.gene027120:intron | 45.0% | |
| TAGCAAATAGCGCTGCTAAC+AGG | - | chr3.4:48416056-48416075 | None:intergenic | 45.0% | |
| TAGGTGTAGAGACAACGCTT+TGG | + | chr3.4:48417931-48417950 | MS.gene027120:intron | 45.0% | |
| TCCTGTCAAAGACGAAATGG+GGG | - | chr3.4:48418562-48418581 | None:intergenic | 45.0% | |
| TCGTGGATACTGAACCACTA+TGG | + | chr3.4:48418454-48418473 | MS.gene027120:intron | 45.0% | |
| TGAAAGCAGGAAAGTGGAAG+AGG | - | chr3.4:48417230-48417249 | None:intergenic | 45.0% | |
| TGGTCTTTGTTCAGCTCAGT+TGG | - | chr3.4:48417124-48417143 | None:intergenic | 45.0% | |
| TTCAAGCTGAGAACGGAAAG+TGG | - | chr3.4:48415316-48415335 | None:intergenic | 45.0% | |
| ! | ATTTGCTAAGACGAGCTGCT+TGG | + | chr3.4:48416681-48416700 | MS.gene027120:intron | 45.0% |
| ! | TGATTGTGGAGTTGTTTCCG+AGG | + | chr3.4:48416812-48416831 | MS.gene027120:CDS | 45.0% |
| !! | GGCATCGAATAAGGGGTTTT+GGG | + | chr3.4:48416467-48416486 | MS.gene027120:CDS | 45.0% |
| !! | TATTTCAGGTTCTCGGTAGC+GGG | + | chr3.4:48417053-48417072 | MS.gene027120:intron | 45.0% |
| !! | TGGCATCGAATAAGGGGTTT+TGG | + | chr3.4:48416466-48416485 | MS.gene027120:CDS | 45.0% |
| !!! | CACTTTTTCTTCTCTGGCGA+AGG | - | chr3.4:48416794-48416813 | None:intergenic | 45.0% |
| !! | AAAAATAAAATAAAGTTAAA+TGG | - | chr3.4:48417520-48417539 | None:intergenic | 5.0% |
| !! | AATTAATAAAAAATAAAATC+TGG | - | chr3.4:48416616-48416635 | None:intergenic | 5.0% |
| ACAAACAGCTGCAGCAGCAA+GGG | + | chr3.4:48415224-48415243 | MS.gene027120:CDS | 50.0% | |
| AGAAGGAGACCTGGAATTGG+AGG | + | chr3.4:48415198-48415217 | MS.gene027120:CDS | 50.0% | |
| AGGAGGCTATCTTGGACTTC+GGG | + | chr3.4:48418322-48418341 | MS.gene027120:CDS | 50.0% | |
| CAACAAACTAGGGTCCTGCT+TGG | - | chr3.4:48417619-48417638 | None:intergenic | 50.0% | |
| CACATCAGTATGCAGCACCA+AGG | - | chr3.4:48417026-48417045 | None:intergenic | 50.0% | |
| CGACAATGTCAAGGTAGAGG+TGG | - | chr3.4:48415842-48415861 | None:intergenic | 50.0% | |
| CTAGCACTCCGTTTACCTCA+GGG | + | chr3.4:48418268-48418287 | MS.gene027120:intron | 50.0% | |
| GACGAAATGGGGGATACACA+CGG | - | chr3.4:48418552-48418571 | None:intergenic | 50.0% | |
| GATTGATCAGTCCACCGTTG+AGG | - | chr3.4:48416752-48416771 | None:intergenic | 50.0% | |
| GCCACAAAGACGGAAAACGA+CGG | + | chr3.4:48418517-48418536 | MS.gene027120:CDS | 50.0% | |
| GCGTGCTATCAGTAAGCTGA+AGG | + | chr3.4:48416845-48416864 | MS.gene027120:CDS | 50.0% | |
| GTCACAAATCCTTGACCCTG+AGG | - | chr3.4:48418286-48418305 | None:intergenic | 50.0% | |
| TACAAACAGCTGCAGCAGCA+AGG | + | chr3.4:48415223-48415242 | MS.gene027120:CDS | 50.0% | |
| TATGGTTTAGGCCTAGGGTC+TGG | + | chr3.4:48417356-48417375 | MS.gene027120:intron | 50.0% | |
| TCAGCTCAGTTGGAACCGAA+CGG | - | chr3.4:48417114-48417133 | None:intergenic | 50.0% | |
| TCAGCTTACTGATAGCACGC+AGG | - | chr3.4:48416845-48416864 | None:intergenic | 50.0% | |
| TCCCCCATTTCGTCTTTGAC+AGG | + | chr3.4:48418558-48418577 | MS.gene027120:CDS | 50.0% | |
| TGCACGAGCCAATACCATAG+TGG | - | chr3.4:48418471-48418490 | None:intergenic | 50.0% | |
| TGGGCAGAGCTATTGGGAAT+TGG | + | chr3.4:48416486-48416505 | MS.gene027120:CDS | 50.0% | |
| TTGATCAGTCCACCGTTGAG+GGG | - | chr3.4:48416750-48416769 | None:intergenic | 50.0% | |
| TTGGCTACTAGACCCCTCAA+CGG | + | chr3.4:48416735-48416754 | MS.gene027120:CDS | 50.0% | |
| ! | AGACAACGCTTTGGTTTCGG+CGG | + | chr3.4:48417940-48417959 | MS.gene027120:intron | 50.0% |
| ! | CATGCATTCTGGTTGACCCT+TGG | + | chr3.4:48417006-48417025 | MS.gene027120:intron | 50.0% |
| !! | ACCGTCGTTTTCCGTCTTTG+TGG | - | chr3.4:48418521-48418540 | None:intergenic | 50.0% |
| !! | ACTATGGTATTGGCTCGTGC+AGG | + | chr3.4:48418470-48418489 | MS.gene027120:intron | 50.0% |
| !!! | GGGTTTTGGGCAGAGCTATT+GGG | + | chr3.4:48416480-48416499 | MS.gene027120:CDS | 50.0% |
| AGCACGCAGGCAATCATCCT+CGG | - | chr3.4:48416832-48416851 | None:intergenic | 55.0% | |
| AGCAGGAAAGTGGAAGAGGC+AGG | - | chr3.4:48417226-48417245 | None:intergenic | 55.0% | |
| CCTAGCACTCCGTTTACCTC+AGG | + | chr3.4:48418267-48418286 | MS.gene027120:intron | 55.0% | |
| CTCCGTTTACCTCAGGGTCA+AGG | + | chr3.4:48418274-48418293 | MS.gene027120:intron | 55.0% | |
| GTTTAGGCCTAGGGTCTGGT+TGG | + | chr3.4:48417360-48417379 | MS.gene027120:intron | 55.0% | |
| ! | CCTGAGGTAAACGGAGTGCT+AGG | - | chr3.4:48418270-48418289 | None:intergenic | 55.0% |
| !! | ATGGTATTGGCTCGTGCAGG+AGG | + | chr3.4:48418473-48418492 | MS.gene027120:intron | 55.0% |
| !! | TGGTATTGGCTCGTGCAGGA+GGG | + | chr3.4:48418474-48418493 | MS.gene027120:intron | 55.0% |
| !!! | GGGGTTTTGGGCAGAGCTAT+TGG | + | chr3.4:48416479-48416498 | MS.gene027120:CDS | 55.0% |
| GACGAGCTGCTTGGCTAGAC+AGG | + | chr3.4:48416690-48416709 | MS.gene027120:intron | 60.0% | |
| GCTACTAGACCCCTCAACGG+TGG | + | chr3.4:48416738-48416757 | MS.gene027120:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 48415195 | 48418596 | 48415195 | ID=MS.gene027120 |
| chr3.4 | mRNA | 48415195 | 48418596 | 48415195 | ID=MS.gene027120.t1;Parent=MS.gene027120 |
| chr3.4 | exon | 48415195 | 48415356 | 48415195 | ID=MS.gene027120.t1.exon1;Parent=MS.gene027120.t1 |
| chr3.4 | CDS | 48415195 | 48415356 | 48415195 | ID=cds.MS.gene027120.t1;Parent=MS.gene027120.t1 |
| chr3.4 | exon | 48416393 | 48416528 | 48416393 | ID=MS.gene027120.t1.exon2;Parent=MS.gene027120.t1 |
| chr3.4 | CDS | 48416393 | 48416528 | 48416393 | ID=cds.MS.gene027120.t1;Parent=MS.gene027120.t1 |
| chr3.4 | exon | 48416712 | 48416866 | 48416712 | ID=MS.gene027120.t1.exon3;Parent=MS.gene027120.t1 |
| chr3.4 | CDS | 48416712 | 48416866 | 48416712 | ID=cds.MS.gene027120.t1;Parent=MS.gene027120.t1 |
| chr3.4 | exon | 48417061 | 48417168 | 48417061 | ID=MS.gene027120.t1.exon4;Parent=MS.gene027120.t1 |
| chr3.4 | CDS | 48417061 | 48417168 | 48417061 | ID=cds.MS.gene027120.t1;Parent=MS.gene027120.t1 |
| chr3.4 | exon | 48418289 | 48418378 | 48418289 | ID=MS.gene027120.t1.exon5;Parent=MS.gene027120.t1 |
| chr3.4 | CDS | 48418289 | 48418378 | 48418289 | ID=cds.MS.gene027120.t1;Parent=MS.gene027120.t1 |
| chr3.4 | exon | 48418492 | 48418596 | 48418492 | ID=MS.gene027120.t1.exon6;Parent=MS.gene027120.t1 |
| chr3.4 | CDS | 48418492 | 48418596 | 48418492 | ID=cds.MS.gene027120.t1;Parent=MS.gene027120.t1 |
| Gene Sequence |
| Protein sequence |
