Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72906.t1 | XP_003612706.1 | 98.3 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 6.80E-97 | 363.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72906.t1 | Q8VZC9 | 79.9 | 179 | 36 | 0 | 1 | 179 | 1 | 179 | 1.6e-83 | 310.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72906.t1 | G7K9K5 | 98.3 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 4.9e-97 | 363.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94355 | MS.gene72906 | PPI |
| MS.gene72906 | MS.gene027120 | PPI |
| MS.gene016363 | MS.gene72906 | PPI |
| MS.gene94059 | MS.gene72906 | PPI |
| MS.gene72906 | MS.gene30089 | PPI |
| MS.gene82706 | MS.gene72906 | PPI |
| MS.gene59808 | MS.gene72906 | PPI |
| MS.gene77803 | MS.gene72906 | PPI |
| MS.gene72906 | MS.gene044581 | PPI |
| MS.gene30148 | MS.gene72906 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72906.t1 | MTR_5g028000 | 98.324 | 179 | 3 | 0 | 1 | 179 | 1 | 179 | 8.84e-131 | 363 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72906.t1 | AT4G19003 | 79.888 | 179 | 36 | 0 | 1 | 179 | 1 | 179 | 2.73e-110 | 312 |
| MS.gene72906.t1 | AT4G19003 | 79.888 | 179 | 36 | 0 | 1 | 179 | 1 | 179 | 2.73e-110 | 312 |
| MS.gene72906.t1 | AT4G19003 | 79.888 | 179 | 36 | 0 | 1 | 179 | 1 | 179 | 2.73e-110 | 312 |
| MS.gene72906.t1 | AT4G19003 | 79.888 | 179 | 36 | 0 | 1 | 179 | 1 | 179 | 2.73e-110 | 312 |
| MS.gene72906.t1 | AT4G19003 | 79.888 | 179 | 36 | 0 | 1 | 179 | 1 | 179 | 2.73e-110 | 312 |
| MS.gene72906.t1 | AT4G19003 | 79.888 | 179 | 36 | 0 | 1 | 179 | 1 | 179 | 2.73e-110 | 312 |
Find 36 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGGAAAGAGCTTATTT+TGG | 0.229792 | 5.1:+19004121 | MS.gene72906:CDS |
| CAACTGAAAGATGCAGAAAT+TGG | 0.231372 | 5.1:+19003779 | None:intergenic |
| GAGAAAAGCAGATTCAATTA+TGG | 0.341366 | 5.1:+19004105 | MS.gene72906:CDS |
| ATTACAGTGTTTGTAAATAG+AGG | 0.358044 | 5.1:-19004194 | None:intergenic |
| CTGGCATCGGATTCAAGATT+GGG | 0.402365 | 5.1:+19005035 | MS.gene72906:CDS |
| TGATATACTGCAGAACTTCA+CGG | 0.411949 | 5.1:+19007220 | MS.gene72906:intron |
| TCTGGCATCGGATTCAAGAT+TGG | 0.413477 | 5.1:+19005034 | MS.gene72906:CDS |
| CGAGCAGAATGGATGGATAA+AGG | 0.420861 | 5.1:+19004991 | MS.gene72906:CDS |
| TGTTAATAGGCAAAAGATAA+TGG | 0.428014 | 5.1:+19005154 | MS.gene72906:intron |
| ATAGAAAATGTCTTATTCTC+TGG | 0.456626 | 5.1:+19005016 | MS.gene72906:CDS |
| ACAATCGAGGAAATACGCTT+TGG | 0.458976 | 5.1:+19005196 | MS.gene72906:CDS |
| GGGACTGAATCTCAAGGAAC+AGG | 0.464136 | 5.1:+19005217 | MS.gene72906:CDS |
| AACTGAAAGATGCAGAAATT+GGG | 0.470298 | 5.1:+19003780 | None:intergenic |
| CTTTCAGCCTTAGTTTCTGA+GGG | 0.472937 | 5.1:+19004878 | MS.gene72906:CDS |
| CCTTTCAGCCTTAGTTTCTG+AGG | 0.484793 | 5.1:+19004877 | MS.gene72906:CDS |
| CAATCGAGGAAATACGCTTT+GGG | 0.486784 | 5.1:+19005197 | MS.gene72906:CDS |
| AAGCATACCCTCAGAAACTA+AGG | 0.489356 | 5.1:-19004885 | None:intergenic |
| GGGAATTACGTGAAGTAAGG+TGG | 0.499999 | 5.1:-19003834 | None:intergenic |
| AAGGGGAATTACGTGAAGTA+AGG | 0.516750 | 5.1:-19003837 | None:intergenic |
| ATTGAAAATATTAGAACAGA+AGG | 0.521573 | 5.1:+19007270 | MS.gene72906:CDS |
| AATGTCTTATTCTCTGGCAT+CGG | 0.545469 | 5.1:+19005022 | MS.gene72906:CDS |
| TTGAAAATATTAGAACAGAA+GGG | 0.553719 | 5.1:+19007271 | MS.gene72906:CDS |
| GGGAAGCTTGTGGTCTTCAA+AGG | 0.556263 | 5.1:+19007292 | MS.gene72906:CDS |
| CCTCAGAAACTAAGGCTGAA+AGG | 0.556651 | 5.1:-19004877 | None:intergenic |
| AAAGATAATGGACTGGAAGA+TGG | 0.556832 | 5.1:+19005166 | MS.gene72906:CDS |
| GACAGGACGAGCAGAATGGA+TGG | 0.559086 | 5.1:+19004984 | MS.gene72906:intron |
| GGAACTTCAACAGATGATGA+AGG | 0.559583 | 5.1:+19007313 | MS.gene72906:CDS |
| GGTGGGTAATTGAAGAAATG+AGG | 0.573058 | 5.1:-19003816 | None:intergenic |
| GATTGACAGGACGAGCAGAA+TGG | 0.577667 | 5.1:+19004980 | MS.gene72906:intron |
| TGAAAATATTAGAACAGAAG+GGG | 0.579506 | 5.1:+19007272 | MS.gene72906:CDS |
| GGAATTACGTGAAGTAAGGT+GGG | 0.585781 | 5.1:-19003833 | None:intergenic |
| CGCTTTGGGACTGAATCTCA+AGG | 0.595797 | 5.1:+19005211 | MS.gene72906:CDS |
| ATAGGCAAAAGATAATGGAC+TGG | 0.599791 | 5.1:+19005159 | MS.gene72906:intron |
| AGAACAGAAGGGGAAGCTTG+TGG | 0.628311 | 5.1:+19007282 | MS.gene72906:CDS |
| GGATTATTGTAAAACACACA+AGG | 0.647245 | 5.1:+19004142 | MS.gene72906:CDS |
| AGATGGTGTTGTGACAATCG+AGG | 0.762704 | 5.1:+19005183 | MS.gene72906:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTTTTAAATATAAA+CGG | + | chr5.1:19006256-19006275 | MS.gene72906:intron | 0.0% |
| !! | AAATATGAAATAAAGTTACT+TGG | - | chr5.1:19003957-19003976 | None:intergenic | 15.0% |
| !! | AACAAAACAAAAATAAACAA+AGG | - | chr5.1:19004776-19004795 | None:intergenic | 15.0% |
| !! | AAGTAAAAAAATGAATTAGA+AGG | - | chr5.1:19003867-19003886 | None:intergenic | 15.0% |
| !! | ACTTACATTTGTAAATTTAT+CGG | + | chr5.1:19007094-19007113 | MS.gene72906:intron | 15.0% |
| !! | AAAACAATCATTCAACAAAA+AGG | - | chr5.1:19004807-19004826 | None:intergenic | 20.0% |
| !! | AAATGAATTAGAAGGAAAAA+AGG | - | chr5.1:19003859-19003878 | None:intergenic | 20.0% |
| !! | AAATTTACTGTGATGTTAAT+AGG | + | chr5.1:19005141-19005160 | MS.gene72906:intron | 20.0% |
| !! | AATAAGCTGTTTATTTAAAC+AGG | - | chr5.1:19004322-19004341 | None:intergenic | 20.0% |
| !! | AATCAAAATATCAACTTTGT+TGG | + | chr5.1:19003900-19003919 | MS.gene72906:intron | 20.0% |
| !! | AATGAATTAGAAGGAAAAAA+GGG | - | chr5.1:19003858-19003877 | None:intergenic | 20.0% |
| !! | AGATATGCCATTAAAATTAT+AGG | + | chr5.1:19006150-19006169 | MS.gene72906:intron | 20.0% |
| !! | ATAAGCTGTTTATTTAAACA+GGG | - | chr5.1:19004321-19004340 | None:intergenic | 20.0% |
| !! | ATTGAAAATATTAGAACAGA+AGG | + | chr5.1:19007270-19007289 | MS.gene72906:CDS | 20.0% |
| !! | GATGACATAATATACTATAA+GGG | - | chr5.1:19005932-19005951 | None:intergenic | 20.0% |
| !! | TCTTAAGAACAAAATCATTT+AGG | - | chr5.1:19005673-19005692 | None:intergenic | 20.0% |
| !! | TGATGACATAATATACTATA+AGG | - | chr5.1:19005933-19005952 | None:intergenic | 20.0% |
| !! | TTATAAATACTTTGCCTAAT+TGG | + | chr5.1:19004275-19004294 | MS.gene72906:intron | 20.0% |
| !! | TTGAAAATATTAGAACAGAA+GGG | + | chr5.1:19007271-19007290 | MS.gene72906:CDS | 20.0% |
| !!! | AAATAATGGACATGTTTTAT+TGG | + | chr5.1:19006791-19006810 | MS.gene72906:intron | 20.0% |
| !!! | ACAAAATCATTTAGGATATA+TGG | - | chr5.1:19005665-19005684 | None:intergenic | 20.0% |
| !!! | ACAAAGTTGATATTTTGATT+TGG | - | chr5.1:19003900-19003919 | None:intergenic | 20.0% |
| !!! | ACTTTTTACTAACTTTTAAG+TGG | + | chr5.1:19006439-19006458 | MS.gene72906:intron | 20.0% |
| !!! | AGAGTGATTCAATATTTTAA+AGG | + | chr5.1:19006638-19006657 | MS.gene72906:intron | 20.0% |
| !!! | ATAAAACATGTCCATTATTT+TGG | - | chr5.1:19006791-19006810 | None:intergenic | 20.0% |
| !!! | ATTGATTTGGATTTTGATTT+TGG | + | chr5.1:19004046-19004065 | MS.gene72906:intron | 20.0% |
| !!! | ATTTAATTTCATGATTTCTG+TGG | + | chr5.1:19004232-19004251 | MS.gene72906:intron | 20.0% |
| !!! | ATTTTGAAAATTATCAGACA+CGG | + | chr5.1:19006544-19006563 | MS.gene72906:intron | 20.0% |
| !!! | CTTAATGTTGATACTTTTTT+TGG | + | chr5.1:19005365-19005384 | MS.gene72906:intron | 20.0% |
| !!! | TTAATGGCCTATAATTTTAA+TGG | - | chr5.1:19006160-19006179 | None:intergenic | 20.0% |
| !!! | TTAGTACTTTATTTTGAGAT+GGG | + | chr5.1:19005271-19005290 | MS.gene72906:intron | 20.0% |
| !!! | TTTAGTACTTTATTTTGAGA+TGG | + | chr5.1:19005270-19005289 | MS.gene72906:intron | 20.0% |
| !!! | TTTTGAGAAATTCATAGTAA+AGG | - | chr5.1:19005823-19005842 | None:intergenic | 20.0% |
| ! | AAAGAAATGGGTAGAAAAAA+AGG | + | chr5.1:19005846-19005865 | MS.gene72906:intron | 25.0% |
| ! | AATAATCTGAAAACAGGTTA+TGG | - | chr5.1:19004646-19004665 | None:intergenic | 25.0% |
| ! | AGAAGTTACTCAAAATAAGT+TGG | + | chr5.1:19006314-19006333 | MS.gene72906:intron | 25.0% |
| ! | AGATTTGCAATACTTGTAAT+TGG | + | chr5.1:19004925-19004944 | MS.gene72906:intron | 25.0% |
| ! | ATCACAGTAAATTTAATCAC+AGG | - | chr5.1:19005135-19005154 | None:intergenic | 25.0% |
| ! | ATCATTTCCTCAAAATAAGT+TGG | + | chr5.1:19006374-19006393 | MS.gene72906:intron | 25.0% |
| ! | ATGAATTAGAAGGAAAAAAG+GGG | - | chr5.1:19003857-19003876 | None:intergenic | 25.0% |
| ! | ATTACAGTGTTTGTAAATAG+AGG | - | chr5.1:19004197-19004216 | None:intergenic | 25.0% |
| ! | CAATGCTAAAATATCTAACA+AGG | + | chr5.1:19005554-19005573 | MS.gene72906:intron | 25.0% |
| ! | CATTGCACATTTATTAATTG+CGG | + | chr5.1:19005728-19005747 | MS.gene72906:intron | 25.0% |
| ! | GATTTGAATTTGCACAAAAA+AGG | - | chr5.1:19003932-19003951 | None:intergenic | 25.0% |
| ! | GATTTGCAATACTTGTAATT+GGG | + | chr5.1:19004926-19004945 | MS.gene72906:intron | 25.0% |
| ! | TAAACATCATATTGTCAGAT+AGG | + | chr5.1:19006979-19006998 | MS.gene72906:intron | 25.0% |
| ! | TATGCAAATAATCTGAAAAC+AGG | - | chr5.1:19004652-19004671 | None:intergenic | 25.0% |
| ! | TCAAATAAGTCAATCCAATT+AGG | - | chr5.1:19004292-19004311 | None:intergenic | 25.0% |
| ! | TCAAGTTTGGCAATTATTTA+TGG | + | chr5.1:19005294-19005313 | MS.gene72906:intron | 25.0% |
| ! | TCACAGTAAATTTAATCACA+GGG | - | chr5.1:19005134-19005153 | None:intergenic | 25.0% |
| ! | TGAAAATATTAGAACAGAAG+GGG | + | chr5.1:19007272-19007291 | MS.gene72906:CDS | 25.0% |
| ! | TGTTAATAGGCAAAAGATAA+TGG | + | chr5.1:19005154-19005173 | MS.gene72906:intron | 25.0% |
| ! | TTCTCAAAACAGAAAGAAAT+GGG | + | chr5.1:19005834-19005853 | MS.gene72906:intron | 25.0% |
| ! | TTTCTCAAAACAGAAAGAAA+TGG | + | chr5.1:19005833-19005852 | MS.gene72906:intron | 25.0% |
| !! | AAAATAAACAAAGGCATGTT+TGG | - | chr5.1:19004767-19004786 | None:intergenic | 25.0% |
| !! | AGCTTTTATGTGATTAATAC+AGG | - | chr5.1:19006574-19006593 | None:intergenic | 25.0% |
| !! | ATAGAAAATGTCTTATTCTC+TGG | + | chr5.1:19005016-19005035 | MS.gene72906:CDS | 25.0% |
| !! | ATTATGGAAAGAGCTTATTT+TGG | + | chr5.1:19004121-19004140 | MS.gene72906:CDS | 25.0% |
| !! | GTTCTAATATTTTCAATGCA+CGG | - | chr5.1:19007267-19007286 | None:intergenic | 25.0% |
| !! | TGGATTGACTTATTTGAATT+TGG | + | chr5.1:19004295-19004314 | MS.gene72906:intron | 25.0% |
| !! | TTATATTTTACCCATTTGGA+GGG | - | chr5.1:19005531-19005550 | None:intergenic | 25.0% |
| !! | TTCGAGAACATTTTTACTTA+TGG | + | chr5.1:19006212-19006231 | MS.gene72906:intron | 25.0% |
| !!! | TTTTAATTGACTTATTCACC+AGG | + | chr5.1:19005964-19005983 | MS.gene72906:intron | 25.0% |
| !!! | TTTTAGATTTTTGATAGTGC+AGG | + | chr5.1:19004824-19004843 | MS.gene72906:intron | 25.0% |
| AATCTGTTACATATATCCCT+AGG | - | chr5.1:19006527-19006546 | None:intergenic | 30.0% | |
| AATTAACCATTATAGGTGGT+GGG | + | chr5.1:19006069-19006088 | MS.gene72906:intron | 30.0% | |
| AATTCCATTGCTGTAGTATA+TGG | - | chr5.1:19006053-19006072 | None:intergenic | 30.0% | |
| ACAATCATTCAACAAAAAGG+TGG | - | chr5.1:19004804-19004823 | None:intergenic | 30.0% | |
| AGACTATTTAGGAGAGTTTA+TGG | + | chr5.1:19004602-19004621 | MS.gene72906:intron | 30.0% | |
| ATGGAATTAACCATTATAGG+TGG | + | chr5.1:19006065-19006084 | MS.gene72906:intron | 30.0% | |
| CACTAAGTAAACAAGAAAAG+TGG | - | chr5.1:19005492-19005511 | None:intergenic | 30.0% | |
| CGGAATCAATTCCAAAATAA+TGG | + | chr5.1:19006777-19006796 | MS.gene72906:intron | 30.0% | |
| GAGAAAAGCAGATTCAATTA+TGG | + | chr5.1:19004105-19004124 | MS.gene72906:CDS | 30.0% | |
| GCAATGGAATTAACCATTAT+AGG | + | chr5.1:19006062-19006081 | MS.gene72906:intron | 30.0% | |
| GGATTATTGTAAAACACACA+AGG | + | chr5.1:19004142-19004161 | MS.gene72906:CDS | 30.0% | |
| GTTGATGCATGATGATATTT+AGG | + | chr5.1:19005341-19005360 | MS.gene72906:intron | 30.0% | |
| TAAAATATGAAGTGTGTCTC+TGG | + | chr5.1:19006739-19006758 | MS.gene72906:intron | 30.0% | |
| TAGTGAGAAAGTGATTGATT+TGG | + | chr5.1:19004033-19004052 | MS.gene72906:intron | 30.0% | |
| TATTGTTAGTTAATGCATGC+TGG | + | chr5.1:19007160-19007179 | MS.gene72906:intron | 30.0% | |
| TCTGGTTACAAAAAATGAAG+CGG | + | chr5.1:19006757-19006776 | MS.gene72906:intron | 30.0% | |
| TTAAAGTAATCGTGAAGATC+AGG | - | chr5.1:19006347-19006366 | None:intergenic | 30.0% | |
| ! | AACATTTTTACTTATGGTGG+AGG | + | chr5.1:19006218-19006237 | MS.gene72906:intron | 30.0% |
| ! | ACAAATTTTACTGCTAGTGA+AGG | + | chr5.1:19005443-19005462 | MS.gene72906:intron | 30.0% |
| ! | CTCAAAATAAGTTGGAAAGA+GGG | + | chr5.1:19006382-19006401 | MS.gene72906:intron | 30.0% |
| ! | CTTATATTTTACCCATTTGG+AGG | - | chr5.1:19005532-19005551 | None:intergenic | 30.0% |
| ! | GAGAACATTTTTACTTATGG+TGG | + | chr5.1:19006215-19006234 | MS.gene72906:intron | 30.0% |
| ! | GAGCTTATATTTTACCCATT+TGG | - | chr5.1:19005535-19005554 | None:intergenic | 30.0% |
| ! | TATGCTATAAGCTGTTTCAT+AGG | - | chr5.1:19004683-19004702 | None:intergenic | 30.0% |
| ! | TCAAAATAAGTTGGAAAGAG+GGG | + | chr5.1:19006383-19006402 | MS.gene72906:intron | 30.0% |
| !! | AATACTTGTAATTGGGTTGA+GGG | + | chr5.1:19004933-19004952 | MS.gene72906:intron | 30.0% |
| !! | AGTTTGTTATTCTGATTGAC+AGG | + | chr5.1:19004967-19004986 | MS.gene72906:intron | 30.0% |
| AAAAAACGCCCTGAAGTAAT+AGG | - | chr5.1:19007124-19007143 | None:intergenic | 35.0% | |
| AAATGCTTAACCCTCCAAAT+GGG | + | chr5.1:19005518-19005537 | MS.gene72906:intron | 35.0% | |
| AAGCACTTGTGAGACTATTT+AGG | + | chr5.1:19004591-19004610 | MS.gene72906:intron | 35.0% | |
| AGAACCATATACTACAGCAA+TGG | + | chr5.1:19006046-19006065 | MS.gene72906:intron | 35.0% | |
| AGACTGTTTCAGAGAACTTA+TGG | - | chr5.1:19004514-19004533 | None:intergenic | 35.0% | |
| ATAGAACCTTTGAGCTGTTT+AGG | + | chr5.1:19005869-19005888 | MS.gene72906:intron | 35.0% | |
| ATATAGTACGACATAGACCT+AGG | + | chr5.1:19006507-19006526 | MS.gene72906:intron | 35.0% | |
| CAAATGTAAGTTTGTGAAGC+AGG | - | chr5.1:19007085-19007104 | None:intergenic | 35.0% | |
| GAATTAACCATTATAGGTGG+TGG | + | chr5.1:19006068-19006087 | MS.gene72906:intron | 35.0% | |
| GGAATAAGCTCAAGACAAAA+TGG | + | chr5.1:19006096-19006115 | MS.gene72906:intron | 35.0% | |
| TAAATGCTTAACCCTCCAAA+TGG | + | chr5.1:19005517-19005536 | MS.gene72906:intron | 35.0% | |
| TACACACACGTGTATAACTA+TGG | - | chr5.1:19006473-19006492 | None:intergenic | 35.0% | |
| TATAGTACGACATAGACCTA+GGG | + | chr5.1:19006508-19006527 | MS.gene72906:intron | 35.0% | |
| TCATATCCTAAACAGCTCAA+AGG | - | chr5.1:19005878-19005897 | None:intergenic | 35.0% | |
| TCTAAGTAGCAGCATAACAT+AGG | + | chr5.1:19006931-19006950 | MS.gene72906:intron | 35.0% | |
| TCTCACAAAACTTATGCTAG+TGG | + | chr5.1:19004531-19004550 | MS.gene72906:intron | 35.0% | |
| TGATATACTGCAGAACTTCA+CGG | + | chr5.1:19007220-19007239 | MS.gene72906:intron | 35.0% | |
| TGGATAAGCAAATCCAAACA+TGG | + | chr5.1:19004551-19004570 | MS.gene72906:intron | 35.0% | |
| ! | AAGCTCTAACATTATGTCGA+AGG | - | chr5.1:19005755-19005774 | None:intergenic | 35.0% |
| ! | AATGTCTTATTCTCTGGCAT+CGG | + | chr5.1:19005022-19005041 | MS.gene72906:CDS | 35.0% |
| ! | CAATACTTGTAATTGGGTTG+AGG | + | chr5.1:19004932-19004951 | MS.gene72906:intron | 35.0% |
| ! | CCTCAAAATAAGTTGGAAAG+AGG | + | chr5.1:19006381-19006400 | MS.gene72906:intron | 35.0% |
| ! | CTGTTTAGGATATGAAAGGT+CGG | + | chr5.1:19005883-19005902 | MS.gene72906:intron | 35.0% |
| ! | TGAGCTGTTTAGGATATGAA+AGG | + | chr5.1:19005879-19005898 | MS.gene72906:intron | 35.0% |
| ! | TTCAAGCATAGCATTTTCAC+TGG | - | chr5.1:19005617-19005636 | None:intergenic | 35.0% |
| ! | TTTTCTCTAGTGTCTCTTAC+TGG | - | chr5.1:19004092-19004111 | None:intergenic | 35.0% |
| !! | AAAGATAATGGACTGGAAGA+TGG | + | chr5.1:19005166-19005185 | MS.gene72906:CDS | 35.0% |
| !! | ATAGGCAAAAGATAATGGAC+TGG | + | chr5.1:19005159-19005178 | MS.gene72906:intron | 35.0% |
| !! | GCTGTTTTCATATGCTATCT+TGG | + | chr5.1:19004435-19004454 | MS.gene72906:intron | 35.0% |
| !!! | ATTTTCACTGGCTTGTGTTT+TGG | - | chr5.1:19005605-19005624 | None:intergenic | 35.0% |
| !!! | ATTTTGAGATGGGTCAAGTT+TGG | + | chr5.1:19005281-19005300 | MS.gene72906:intron | 35.0% |
| !!! | CCTCTTTCCAACTTATTTTG+AGG | - | chr5.1:19006384-19006403 | None:intergenic | 35.0% |
| !!! | CTGTGCAATTGTTTTGACAT+TGG | + | chr5.1:19007184-19007203 | MS.gene72906:intron | 35.0% |
| AAGCATACCCTCAGAAACTA+AGG | - | chr5.1:19004888-19004907 | None:intergenic | 40.0% | |
| AAGGGGAATTACGTGAAGTA+AGG | - | chr5.1:19003840-19003859 | None:intergenic | 40.0% | |
| AAGTAGCAGCATAACATAGG+TGG | + | chr5.1:19006934-19006953 | MS.gene72906:intron | 40.0% | |
| AAGTTTGTGAAGCAGGTCAA+GGG | - | chr5.1:19007078-19007097 | None:intergenic | 40.0% | |
| ACAATCGAGGAAATACGCTT+TGG | + | chr5.1:19005196-19005215 | MS.gene72906:CDS | 40.0% | |
| ATCGGTTGTCCTATTACTTC+AGG | + | chr5.1:19007112-19007131 | MS.gene72906:intron | 40.0% | |
| CAATCGAGGAAATACGCTTT+GGG | + | chr5.1:19005197-19005216 | MS.gene72906:CDS | 40.0% | |
| CTTTCAGCCTTAGTTTCTGA+GGG | + | chr5.1:19004878-19004897 | MS.gene72906:CDS | 40.0% | |
| GAGGGGAAGTAGATCAAATA+AGG | + | chr5.1:19006400-19006419 | MS.gene72906:intron | 40.0% | |
| GGAACTTCAACAGATGATGA+AGG | + | chr5.1:19007313-19007332 | MS.gene72906:CDS | 40.0% | |
| GGAAGTAGATCAAATAAGGC+GGG | + | chr5.1:19006404-19006423 | MS.gene72906:intron | 40.0% | |
| GGAATTACGTGAAGTAAGGT+GGG | - | chr5.1:19003836-19003855 | None:intergenic | 40.0% | |
| GGGAAGTAGATCAAATAAGG+CGG | + | chr5.1:19006403-19006422 | MS.gene72906:intron | 40.0% | |
| GGTGGGTAATTGAAGAAATG+AGG | - | chr5.1:19003819-19003838 | None:intergenic | 40.0% | |
| TAAGTTTGTGAAGCAGGTCA+AGG | - | chr5.1:19007079-19007098 | None:intergenic | 40.0% | |
| TATTCACCAGGAGTCATGTA+AGG | + | chr5.1:19005976-19005995 | MS.gene72906:intron | 40.0% | |
| TCGGTTGTCCTATTACTTCA+GGG | + | chr5.1:19007113-19007132 | MS.gene72906:intron | 40.0% | |
| TCTCGAAATAAGCACACCAT+GGG | - | chr5.1:19006199-19006218 | None:intergenic | 40.0% | |
| TTCTCGAAATAAGCACACCA+TGG | - | chr5.1:19006200-19006219 | None:intergenic | 40.0% | |
| TTGCTGACATGAGATTGTCA+TGG | - | chr5.1:19006129-19006148 | None:intergenic | 40.0% | |
| ! | CACTTCTTGTTTCACGATGA+GGG | - | chr5.1:19007009-19007028 | None:intergenic | 40.0% |
| ! | CTGGTCTGTGCATTTTATTC+AGG | + | chr5.1:19006858-19006877 | MS.gene72906:intron | 40.0% |
| ! | GCTGCTACTTAGAAACACAA+TGG | - | chr5.1:19006924-19006943 | None:intergenic | 40.0% |
| ! | TTTTCACCTTACATGACTCC+TGG | - | chr5.1:19005985-19006004 | None:intergenic | 40.0% |
| !!! | ACTGGCTTGTGTTTTGGTAT+TGG | - | chr5.1:19005599-19005618 | None:intergenic | 40.0% |
| AAACATGGCTCCTATCTACC+GGG | + | chr5.1:19004566-19004585 | MS.gene72906:intron | 45.0% | |
| AAGTGCTTATCCCGGTAGAT+AGG | - | chr5.1:19004579-19004598 | None:intergenic | 45.0% | |
| ACCTTTGCCACAGCAAGTTT+GGG | + | chr5.1:19005796-19005815 | MS.gene72906:intron | 45.0% | |
| AGTCTCACAAGTGCTTATCC+CGG | - | chr5.1:19004587-19004606 | None:intergenic | 45.0% | |
| CAAACATGGCTCCTATCTAC+CGG | + | chr5.1:19004565-19004584 | MS.gene72906:intron | 45.0% | |
| CCTCAGAAACTAAGGCTGAA+AGG | - | chr5.1:19004880-19004899 | None:intergenic | 45.0% | |
| CCTCATCGTGAAACAAGAAG+TGG | + | chr5.1:19007007-19007026 | MS.gene72906:intron | 45.0% | |
| CCTTTCAGCCTTAGTTTCTG+AGG | + | chr5.1:19004877-19004896 | MS.gene72906:CDS | 45.0% | |
| CGAGCAGAATGGATGGATAA+AGG | + | chr5.1:19004991-19005010 | MS.gene72906:CDS | 45.0% | |
| GGGAATTACGTGAAGTAAGG+TGG | - | chr5.1:19003837-19003856 | None:intergenic | 45.0% | |
| TGCTAGTGAAGGACATGAGT+TGG | + | chr5.1:19005454-19005473 | MS.gene72906:intron | 45.0% | |
| ! | CCACTTCTTGTTTCACGATG+AGG | - | chr5.1:19007010-19007029 | None:intergenic | 45.0% |
| ! | CTGGCATCGGATTCAAGATT+GGG | + | chr5.1:19005035-19005054 | MS.gene72906:CDS | 45.0% |
| ! | TCTGGCATCGGATTCAAGAT+TGG | + | chr5.1:19005034-19005053 | MS.gene72906:CDS | 45.0% |
| ! | TCTTGTTTCACGATGAGGGA+TGG | - | chr5.1:19007005-19007024 | None:intergenic | 45.0% |
| !! | AGATGGTGTTGTGACAATCG+AGG | + | chr5.1:19005183-19005202 | MS.gene72906:CDS | 45.0% |
| !! | TAAAGGACCCAAACTTGCTG+TGG | - | chr5.1:19005806-19005825 | None:intergenic | 45.0% |
| AGAACAGAAGGGGAAGCTTG+TGG | + | chr5.1:19007282-19007301 | MS.gene72906:CDS | 50.0% | |
| CAGACTCGCATCATCACTTC+TGG | + | chr5.1:19006839-19006858 | MS.gene72906:intron | 50.0% | |
| CGGTAGATAGGAGCCATGTT+TGG | - | chr5.1:19004567-19004586 | None:intergenic | 50.0% | |
| GACCTTTGCCACAGCAAGTT+TGG | + | chr5.1:19005795-19005814 | MS.gene72906:intron | 50.0% | |
| GATGCGAGTCTGTGGTTACA+AGG | - | chr5.1:19006831-19006850 | None:intergenic | 50.0% | |
| GATTGACAGGACGAGCAGAA+TGG | + | chr5.1:19004980-19004999 | MS.gene72906:intron | 50.0% | |
| GGGAAGCTTGTGGTCTTCAA+AGG | + | chr5.1:19007292-19007311 | MS.gene72906:CDS | 50.0% | |
| GGGACTGAATCTCAAGGAAC+AGG | + | chr5.1:19005217-19005236 | MS.gene72906:CDS | 50.0% | |
| ! | GAAGTGATGATGCGAGTCTG+TGG | - | chr5.1:19006839-19006858 | None:intergenic | 50.0% |
| !! | ACCATTATAGGTGGTGGGAC+TGG | + | chr5.1:19006074-19006093 | MS.gene72906:intron | 50.0% |
| !! | ACCCAAACTTGCTGTGGCAA+AGG | - | chr5.1:19005800-19005819 | None:intergenic | 50.0% |
| !! | AGCCAGAGCTAGTGGGTTAA+TGG | - | chr5.1:19006176-19006195 | None:intergenic | 50.0% |
| !! | CCATTATAGGTGGTGGGACT+GGG | + | chr5.1:19006075-19006094 | MS.gene72906:intron | 50.0% |
| !! | CGCTTTGGGACTGAATCTCA+AGG | + | chr5.1:19005211-19005230 | MS.gene72906:CDS | 50.0% |
| CCCAGTCCCACCACCTATAA+TGG | - | chr5.1:19006078-19006097 | None:intergenic | 55.0% | |
| GACAGGACGAGCAGAATGGA+TGG | + | chr5.1:19004984-19005003 | MS.gene72906:intron | 55.0% | |
| GGCCATTAACCCACTAGCTC+TGG | + | chr5.1:19006171-19006190 | MS.gene72906:intron | 55.0% | |
| ACCATGGGAGCCAGAGCTAG+TGG | - | chr5.1:19006184-19006203 | None:intergenic | 60.0% | |
| CCATGGGAGCCAGAGCTAGT+GGG | - | chr5.1:19006183-19006202 | None:intergenic | 60.0% | |
| !! | CCCACTAGCTCTGGCTCCCA+TGG | + | chr5.1:19006180-19006199 | MS.gene72906:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 19003789 | 19007354 | 19003789 | ID=MS.gene72906 |
| chr5.1 | mRNA | 19003789 | 19007354 | 19003789 | ID=MS.gene72906.t1;Parent=MS.gene72906 |
| chr5.1 | exon | 19003789 | 19003847 | 19003789 | ID=MS.gene72906.t1.exon1;Parent=MS.gene72906.t1 |
| chr5.1 | CDS | 19003789 | 19003847 | 19003789 | ID=cds.MS.gene72906.t1;Parent=MS.gene72906.t1 |
| chr5.1 | exon | 19004082 | 19004221 | 19004082 | ID=MS.gene72906.t1.exon2;Parent=MS.gene72906.t1 |
| chr5.1 | CDS | 19004082 | 19004221 | 19004082 | ID=cds.MS.gene72906.t1;Parent=MS.gene72906.t1 |
| chr5.1 | exon | 19004846 | 19004899 | 19004846 | ID=MS.gene72906.t1.exon3;Parent=MS.gene72906.t1 |
| chr5.1 | CDS | 19004846 | 19004899 | 19004846 | ID=cds.MS.gene72906.t1;Parent=MS.gene72906.t1 |
| chr5.1 | exon | 19004989 | 19005077 | 19004989 | ID=MS.gene72906.t1.exon4;Parent=MS.gene72906.t1 |
| chr5.1 | CDS | 19004989 | 19005077 | 19004989 | ID=cds.MS.gene72906.t1;Parent=MS.gene72906.t1 |
| chr5.1 | exon | 19005163 | 19005238 | 19005163 | ID=MS.gene72906.t1.exon5;Parent=MS.gene72906.t1 |
| chr5.1 | CDS | 19005163 | 19005238 | 19005163 | ID=cds.MS.gene72906.t1;Parent=MS.gene72906.t1 |
| chr5.1 | exon | 19007233 | 19007354 | 19007233 | ID=MS.gene72906.t1.exon6;Parent=MS.gene72906.t1 |
| chr5.1 | CDS | 19007233 | 19007354 | 19007233 | ID=cds.MS.gene72906.t1;Parent=MS.gene72906.t1 |
| Gene Sequence |
| Protein sequence |
