AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028008

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028008.t1 MTR_5g028000 98.324 179 3 0 1 179 1 179 8.84e-131 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028008.t1 AT4G19003 79.888 179 36 0 1 179 1 179 2.73e-110 312
MS.gene028008.t1 AT4G19003 79.888 179 36 0 1 179 1 179 2.73e-110 312
MS.gene028008.t1 AT4G19003 79.888 179 36 0 1 179 1 179 2.73e-110 312
MS.gene028008.t1 AT4G19003 79.888 179 36 0 1 179 1 179 2.73e-110 312
MS.gene028008.t1 AT4G19003 79.888 179 36 0 1 179 1 179 2.73e-110 312
MS.gene028008.t1 AT4G19003 79.888 179 36 0 1 179 1 179 2.73e-110 312

Find 36 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATGGAAAGAGCTTATTT+TGG 0.229792 5.2:-19210049 MS.gene028008:CDS
CAACTGAAAGATGCAGAAAT+TGG 0.231372 5.2:-19210391 None:intergenic
GAGAAAAGCAGATTCAATTA+TGG 0.341366 5.2:-19210065 MS.gene028008:CDS
ATTACAGTGTTTGTAAATAG+AGG 0.358044 5.2:+19209976 None:intergenic
CTGGCATCGGATTCAAGATT+GGG 0.402365 5.2:-19209134 MS.gene028008:CDS
TGATATACTGCAGAACTTCA+CGG 0.411949 5.2:-19206938 MS.gene028008:intron
TCTGGCATCGGATTCAAGAT+TGG 0.413477 5.2:-19209135 MS.gene028008:CDS
CGAGCAGAATGGATGGATAA+AGG 0.420861 5.2:-19209178 MS.gene028008:CDS
TGTTAATAGGCAAAAGATAA+TGG 0.428014 5.2:-19209015 MS.gene028008:intron
ATAGAAAATGTCTTATTCTC+TGG 0.456626 5.2:-19209153 MS.gene028008:CDS
ACAATCGAGGAAATACGCTT+TGG 0.458976 5.2:-19208973 MS.gene028008:CDS
AACTGAAAGATGCAGAAATT+GGG 0.470298 5.2:-19210390 None:intergenic
CTTTCAGCCTTAGTTTCTGA+GGG 0.472937 5.2:-19209291 MS.gene028008:intron
GGGACTGAATCTCAAGGAAC+AGG 0.481530 5.2:-19208952 MS.gene028008:intron
CCTTTCAGCCTTAGTTTCTG+AGG 0.484793 5.2:-19209292 MS.gene028008:CDS
CAATCGAGGAAATACGCTTT+GGG 0.486784 5.2:-19208972 MS.gene028008:CDS
AAGCATACCCTCAGAAACTA+AGG 0.489356 5.2:+19209284 None:intergenic
GGGAATTACGTGAAGTAAGG+TGG 0.499999 5.2:+19210336 None:intergenic
AAGGGGAATTACGTGAAGTA+AGG 0.516750 5.2:+19210333 None:intergenic
ATTGAAAATATTAGAACAGA+AGG 0.521573 5.2:-19206888 MS.gene028008:CDS
AATGTCTTATTCTCTGGCAT+CGG 0.545469 5.2:-19209147 MS.gene028008:CDS
TTGAAAATATTAGAACAGAA+GGG 0.553719 5.2:-19206887 MS.gene028008:CDS
GGGAAGCTTGTGGTCTTCAA+AGG 0.556263 5.2:-19206866 MS.gene028008:CDS
CCTCAGAAACTAAGGCTGAA+AGG 0.556651 5.2:+19209292 None:intergenic
AAAGATAATGGACTGGAAGA+TGG 0.556832 5.2:-19209003 MS.gene028008:CDS
GACAGGACGAGCAGAATGGA+TGG 0.559086 5.2:-19209185 MS.gene028008:intron
GGAACTTCAACAGATGATGA+AGG 0.559583 5.2:-19206845 MS.gene028008:CDS
GGTGGGTAATTGAAGAAATG+AGG 0.573058 5.2:+19210354 None:intergenic
GATTGACAGGACGAGCAGAA+TGG 0.577667 5.2:-19209189 MS.gene028008:intron
TGAAAATATTAGAACAGAAG+GGG 0.579506 5.2:-19206886 MS.gene028008:CDS
GGAATTACGTGAAGTAAGGT+GGG 0.585781 5.2:+19210337 None:intergenic
CGCTTTGGGACTGAATCTCA+AGG 0.595797 5.2:-19208958 MS.gene028008:CDS
ATAGGCAAAAGATAATGGAC+TGG 0.599791 5.2:-19209010 MS.gene028008:intron
AGAACAGAAGGGGAAGCTTG+TGG 0.628311 5.2:-19206876 MS.gene028008:CDS
GGATTATTGTAAAACACACA+AGG 0.647245 5.2:-19210028 MS.gene028008:CDS
AGATGGTGTTGTGACAATCG+AGG 0.762704 5.2:-19208986 MS.gene028008:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTTTAAATATAAA+CGG - chr5.2:19209290-19209309 MS.gene028008:intron 0.0%
!! AAATATGAAATAAAGTTACT+TGG + chr5.2:19206994-19207013 None:intergenic 15.0%
!! AACAAAACAAAAATAAACAA+AGG + chr5.2:19207814-19207833 None:intergenic 15.0%
!! AAGTAAAAAAATGAATTAGA+AGG + chr5.2:19206904-19206923 None:intergenic 15.0%
!! ACTTACATTTGTAAATTTAT+CGG - chr5.2:19210143-19210162 MS.gene028008:intron 15.0%
!!! CTTAATGTTTATACTTTTTT+TGG - chr5.2:19208403-19208422 MS.gene028008:intron 15.0%
!! AAAACAATCATTCAACAAAA+AGG + chr5.2:19207845-19207864 None:intergenic 20.0%
!! AAATGAATTAGAAGGAAAAA+AGG + chr5.2:19206896-19206915 None:intergenic 20.0%
!! AAATTTACTGTGATGTTAAT+AGG - chr5.2:19208179-19208198 MS.gene028008:intron 20.0%
!! AATAAGCTGTTTATTTAAAC+AGG + chr5.2:19207359-19207378 None:intergenic 20.0%
!! AATCAAAATATCAACTTTGT+TGG - chr5.2:19206937-19206956 MS.gene028008:intron 20.0%
!! AATGAATTAGAAGGAAAAAA+GGG + chr5.2:19206895-19206914 None:intergenic 20.0%
!! AGATATGCCATTAAAATTAT+AGG - chr5.2:19209184-19209203 MS.gene028008:intron 20.0%
!! ATAAGCTGTTTATTTAAACA+GGG + chr5.2:19207358-19207377 None:intergenic 20.0%
!! ATTGAAAATATTAGAACAGA+AGG - chr5.2:19210319-19210338 MS.gene028008:intron 20.0%
!! GATGACATAATATACTATAA+GGG + chr5.2:19208966-19208985 None:intergenic 20.0%
!! TCTTAAGAACAAAATCATTT+AGG + chr5.2:19208711-19208730 None:intergenic 20.0%
!! TGATGACATAATATACTATA+AGG + chr5.2:19208967-19208986 None:intergenic 20.0%
!! TTATAAATACTTTGCCTAAT+TGG - chr5.2:19207312-19207331 MS.gene028008:intron 20.0%
!! TTGAAAATATTAGAACAGAA+GGG - chr5.2:19210320-19210339 MS.gene028008:intron 20.0%
!!! AAATAATGGACATGTTTTAT+TGG - chr5.2:19209826-19209845 MS.gene028008:intron 20.0%
!!! ACAAAATCATTTAGGATATA+TGG + chr5.2:19208703-19208722 None:intergenic 20.0%
!!! ACAAAGTTGATATTTTGATT+TGG + chr5.2:19206937-19206956 None:intergenic 20.0%
!!! ACTTTTTACTAACTTTTAAG+TGG - chr5.2:19209474-19209493 MS.gene028008:intron 20.0%
!!! AGAATATATGCATTTTATTC+AGG - chr5.2:19209907-19209926 MS.gene028008:intron 20.0%
!!! AGAGTGATTCAATATTTTAA+AGG - chr5.2:19209673-19209692 MS.gene028008:intron 20.0%
!!! ATAAAACATGTCCATTATTT+TGG + chr5.2:19209826-19209845 None:intergenic 20.0%
!!! ATTGATTTGGATTTTGATTT+TGG - chr5.2:19207083-19207102 MS.gene028008:intron 20.0%
!!! ATTTAATTTCATGATTTCTG+TGG - chr5.2:19207269-19207288 MS.gene028008:intron 20.0%
!!! ATTTTGAAAATTATCTGACA+CGG - chr5.2:19209579-19209598 MS.gene028008:intron 20.0%
!!! TTAATGGCCTATAATTTTAA+TGG + chr5.2:19209194-19209213 None:intergenic 20.0%
!!! TTAGTACTTTATTTTGAGAT+GGG - chr5.2:19208309-19208328 MS.gene028008:intron 20.0%
!!! TTTAGTACTTTATTTTGAGA+TGG - chr5.2:19208308-19208327 MS.gene028008:intron 20.0%
!!! TTTTGAGAAATTCATAGTAA+AGG + chr5.2:19208857-19208876 None:intergenic 20.0%
! AAAGAAATGGGTAGAAAAAA+AGG - chr5.2:19208880-19208899 MS.gene028008:intron 25.0%
! AATAATCTGAAAACAGGTTA+TGG + chr5.2:19207683-19207702 None:intergenic 25.0%
! AGAAGTTACTCAAAATAAGT+TGG - chr5.2:19209348-19209367 MS.gene028008:intron 25.0%
! AGATTTGCAATACTTGTAAT+TGG - chr5.2:19207963-19207982 MS.gene028008:intron 25.0%
! ATCACAGTAAATTTAATCAC+AGG + chr5.2:19208173-19208192 None:intergenic 25.0%
! ATCATTTCCTCAAAATAAGT+TGG - chr5.2:19209409-19209428 MS.gene028008:intron 25.0%
! ATGAATTAGAAGGAAAAAAG+GGG + chr5.2:19206894-19206913 None:intergenic 25.0%
! ATTACAGTGTTTGTAAATAG+AGG + chr5.2:19207234-19207253 None:intergenic 25.0%
! CAATGCTAAAATATCTAACA+AGG - chr5.2:19208592-19208611 MS.gene028008:intron 25.0%
! CATTGCACATTTATTAATTG+CGG - chr5.2:19208766-19208785 MS.gene028008:intron 25.0%
! GATTTGAATATGCACAAAAA+AGG + chr5.2:19206969-19206988 None:intergenic 25.0%
! GATTTGCAATACTTGTAATT+GGG - chr5.2:19207964-19207983 MS.gene028008:intron 25.0%
! TATATGGTTCTTAGATTACA+TGG + chr5.2:19209071-19209090 None:intergenic 25.0%
! TATGCAAATAATCTGAAAAC+AGG + chr5.2:19207689-19207708 None:intergenic 25.0%
! TCAAATAAGTCAATCCAATT+AGG + chr5.2:19207329-19207348 None:intergenic 25.0%
! TCAAGTTTGGCAATTATTTA+TGG - chr5.2:19208332-19208351 MS.gene028008:intron 25.0%
! TCACAGTAAATTTAATCACA+GGG + chr5.2:19208172-19208191 None:intergenic 25.0%
! TGAAAATATTAGAACAGAAG+GGG - chr5.2:19210321-19210340 MS.gene028008:intron 25.0%
! TGTTAATAGGCAAAAGATAA+TGG - chr5.2:19208192-19208211 MS.gene028008:intron 25.0%
! TTCTCAAAACAGAAAGAAAT+GGG - chr5.2:19208868-19208887 MS.gene028008:intron 25.0%
! TTTCTCAAAACAGAAAGAAA+TGG - chr5.2:19208867-19208886 MS.gene028008:intron 25.0%
!! AAAATAAACAAAGGCATGTT+TGG + chr5.2:19207805-19207824 None:intergenic 25.0%
!! AATGTGCAATGATGATTTTA+AGG + chr5.2:19208757-19208776 None:intergenic 25.0%
!! AGCTTTTATGTGATTAATAC+AGG + chr5.2:19209609-19209628 None:intergenic 25.0%
!! ATAGAAAATGTCTTATTCTC+TGG - chr5.2:19208054-19208073 MS.gene028008:intron 25.0%
!! ATTATGGAAAGAGCTTATTT+TGG - chr5.2:19207158-19207177 MS.gene028008:intron 25.0%
!! GTTCTAATATTTTCAATGCA+CGG + chr5.2:19210316-19210335 None:intergenic 25.0%
!! TGGATTGACTTATTTGAATT+TGG - chr5.2:19207332-19207351 MS.gene028008:intron 25.0%
!! TTATATTTTACCCATTTGGA+GGG + chr5.2:19208569-19208588 None:intergenic 25.0%
!! TTCGAGAACATTTTTACTTA+TGG - chr5.2:19209246-19209265 MS.gene028008:intron 25.0%
!!! TTTTAATTGACTTATTCACC+AGG - chr5.2:19208998-19209017 MS.gene028008:CDS 25.0%
!!! TTTTAGATTTTTGATAGTGC+AGG - chr5.2:19207862-19207881 MS.gene028008:intron 25.0%
AATCTGTTACATATATCCCT+AGG + chr5.2:19209562-19209581 None:intergenic 30.0%
AATTAACCATTATAGGTGGT+GGG - chr5.2:19209103-19209122 MS.gene028008:intron 30.0%
AATTCCATTGCTGTAGTATA+TGG + chr5.2:19209087-19209106 None:intergenic 30.0%
ACAATCATTCAACAAAAAGG+TGG + chr5.2:19207842-19207861 None:intergenic 30.0%
AGACTATTTAGGAGAGTTTA+TGG - chr5.2:19207639-19207658 MS.gene028008:intron 30.0%
ATGGAATTAACCATTATAGG+TGG - chr5.2:19209099-19209118 MS.gene028008:intron 30.0%
CACTAAGTAAACAAGAAAAG+TGG + chr5.2:19208530-19208549 None:intergenic 30.0%
CGGAATCAATTCCAAAATAA+TGG - chr5.2:19209812-19209831 MS.gene028008:intron 30.0%
GAGAAAAGCAGATTCAATTA+TGG - chr5.2:19207142-19207161 MS.gene028008:intron 30.0%
GCAATGGAATTAACCATTAT+AGG - chr5.2:19209096-19209115 MS.gene028008:intron 30.0%
GGATTATTGTAAAACACACA+AGG - chr5.2:19207179-19207198 MS.gene028008:intron 30.0%
GTTGATGCATGATGATATTT+AGG - chr5.2:19208379-19208398 MS.gene028008:intron 30.0%
TAAAATATGAAGTGTGTCTC+TGG - chr5.2:19209774-19209793 MS.gene028008:intron 30.0%
TAGTGAGAAAGTGATTGATT+TGG - chr5.2:19207070-19207089 MS.gene028008:intron 30.0%
TATTGTTAGTTAATGCATGC+TGG - chr5.2:19210209-19210228 MS.gene028008:intron 30.0%
TCTGGTTACAAAAAATGAAG+CGG - chr5.2:19209792-19209811 MS.gene028008:intron 30.0%
! AACATTTTTACTTATGGTGG+AGG - chr5.2:19209252-19209271 MS.gene028008:intron 30.0%
! ACAAATTTTACTGCTAGTGA+AGG - chr5.2:19208481-19208500 MS.gene028008:intron 30.0%
! CTCAAAATAAGTTGGAAAGA+GGG - chr5.2:19209417-19209436 MS.gene028008:intron 30.0%
! CTTATATTTTACCCATTTGG+AGG + chr5.2:19208570-19208589 None:intergenic 30.0%
! GAGAACATTTTTACTTATGG+TGG - chr5.2:19209249-19209268 MS.gene028008:intron 30.0%
! GAGCTTATATTTTACCCATT+TGG + chr5.2:19208573-19208592 None:intergenic 30.0%
! TATGAGATTTTCACCTTACA+TGG + chr5.2:19209026-19209045 None:intergenic 30.0%
! TCAAAATAAGTTGGAAAGAG+GGG - chr5.2:19209418-19209437 MS.gene028008:intron 30.0%
!! AATACTTGTAATTGGGTTGA+GGG - chr5.2:19207971-19207990 MS.gene028008:intron 30.0%
!! AGTTTGTTATTCTGATTGAC+AGG - chr5.2:19208005-19208024 MS.gene028008:intron 30.0%
!! ATGCTATAAGCTGTTTTCAT+AGG + chr5.2:19207720-19207739 None:intergenic 30.0%
AAAAAACGCCCTGAAGTAAT+AGG + chr5.2:19210173-19210192 None:intergenic 35.0%
AAATGCTTAACCCTCCAAAT+GGG - chr5.2:19208556-19208575 MS.gene028008:intron 35.0%
AAGCACTTGTGAGACTATTT+AGG - chr5.2:19207628-19207647 MS.gene028008:intron 35.0%
AGAACCATATACTACAGCAA+TGG - chr5.2:19209080-19209099 MS.gene028008:intron 35.0%
AGACTGTTTCAGAGAACTTA+TGG + chr5.2:19207551-19207570 None:intergenic 35.0%
ATAGAACCTTTGAGCTGTTT+AGG - chr5.2:19208903-19208922 MS.gene028008:intron 35.0%
ATATAGTACGACATAGACCT+AGG - chr5.2:19209542-19209561 MS.gene028008:intron 35.0%
CAAATGTAAGTTTGTGAAGC+AGG + chr5.2:19210134-19210153 None:intergenic 35.0%
GAATTAACCATTATAGGTGG+TGG - chr5.2:19209102-19209121 MS.gene028008:intron 35.0%
GGAATAAGCTCAAGACAAAA+TGG - chr5.2:19209130-19209149 MS.gene028008:CDS 35.0%
TAAATGCTTAACCCTCCAAA+TGG - chr5.2:19208555-19208574 MS.gene028008:intron 35.0%
TACACACACGTGTATAACTA+TGG + chr5.2:19209508-19209527 None:intergenic 35.0%
TATAGTACGACATAGACCTA+GGG - chr5.2:19209543-19209562 MS.gene028008:intron 35.0%
TCATATCCTAAACAGCTCAA+AGG + chr5.2:19208912-19208931 None:intergenic 35.0%
TCTAAGTAGCAGCATAACAT+AGG - chr5.2:19209980-19209999 MS.gene028008:CDS 35.0%
TCTCACAAAACTTATGCTAG+TGG - chr5.2:19207568-19207587 MS.gene028008:intron 35.0%
TGATATACTGCAGAACTTCA+CGG - chr5.2:19210269-19210288 MS.gene028008:intron 35.0%
TGGATAAGCAAATCCAAACA+TGG - chr5.2:19207588-19207607 MS.gene028008:intron 35.0%
! AAGCTCTAACATTATGTCGA+AGG + chr5.2:19208793-19208812 None:intergenic 35.0%
! AATGTCTTATTCTCTGGCAT+CGG - chr5.2:19208060-19208079 MS.gene028008:intron 35.0%
! CAATACTTGTAATTGGGTTG+AGG - chr5.2:19207970-19207989 MS.gene028008:intron 35.0%
! CCTCAAAATAAGTTGGAAAG+AGG - chr5.2:19209416-19209435 MS.gene028008:intron 35.0%
! CTGTTTAGGATATGAAAGGT+CGG - chr5.2:19208917-19208936 MS.gene028008:intron 35.0%
! TGAGCTGTTTAGGATATGAA+AGG - chr5.2:19208913-19208932 MS.gene028008:intron 35.0%
! TTCAAGCATAGCATTTTCAC+TGG + chr5.2:19208655-19208674 None:intergenic 35.0%
! TTTTCTCTAGTGTCTCTTAC+TGG + chr5.2:19207129-19207148 None:intergenic 35.0%
!! AAAGATAATGGACTGGAAGA+TGG - chr5.2:19208204-19208223 MS.gene028008:intron 35.0%
!! ATAGGCAAAAGATAATGGAC+TGG - chr5.2:19208197-19208216 MS.gene028008:intron 35.0%
!!! ATTTTCACTGGCTTGTGTTT+TGG + chr5.2:19208643-19208662 None:intergenic 35.0%
!!! ATTTTGAGATGGGTCAAGTT+TGG - chr5.2:19208319-19208338 MS.gene028008:intron 35.0%
!!! CCTCTTTCCAACTTATTTTG+AGG + chr5.2:19209419-19209438 None:intergenic 35.0%
!!! CTGTGCAATTGTTTTGACAT+TGG - chr5.2:19210233-19210252 MS.gene028008:intron 35.0%
AAGCATACCCTCAGAAACTA+AGG + chr5.2:19207926-19207945 None:intergenic 40.0%
AAGGGGAATTACGTGAAGTA+AGG + chr5.2:19206877-19206896 None:intergenic 40.0%
AAGTAGCAGCATAACATAGG+TGG - chr5.2:19209983-19210002 MS.gene028008:CDS 40.0%
AAGTTTGTGAAGCAGGTCAA+GGG + chr5.2:19210127-19210146 None:intergenic 40.0%
ACAATCGAGGAAATACGCTT+TGG - chr5.2:19208234-19208253 MS.gene028008:intron 40.0%
ATCGGTTGTCCTATTACTTC+AGG - chr5.2:19210161-19210180 MS.gene028008:intron 40.0%
CAATCGAGGAAATACGCTTT+GGG - chr5.2:19208235-19208254 MS.gene028008:intron 40.0%
CTTTCAGCCTTAGTTTCTGA+GGG - chr5.2:19207916-19207935 MS.gene028008:intron 40.0%
GAGGGGAAGTAGATCAAATA+AGG - chr5.2:19209435-19209454 MS.gene028008:intron 40.0%
GGAACTTCAACAGATGATGA+AGG - chr5.2:19210362-19210381 MS.gene028008:CDS 40.0%
GGAAGTAGATCAAATAAGGC+GGG - chr5.2:19209439-19209458 MS.gene028008:intron 40.0%
GGAATTACGTGAAGTAAGGT+GGG + chr5.2:19206873-19206892 None:intergenic 40.0%
GGGAAGTAGATCAAATAAGG+CGG - chr5.2:19209438-19209457 MS.gene028008:intron 40.0%
GGTGGGTAATTGAAGAAATG+AGG + chr5.2:19206856-19206875 None:intergenic 40.0%
TAAGTTTGTGAAGCAGGTCA+AGG + chr5.2:19210128-19210147 None:intergenic 40.0%
TCGGTTGTCCTATTACTTCA+GGG - chr5.2:19210162-19210181 MS.gene028008:intron 40.0%
TCTCGAAATAAGCACACCAT+GGG + chr5.2:19209233-19209252 None:intergenic 40.0%
TTCTCGAAATAAGCACACCA+TGG + chr5.2:19209234-19209253 None:intergenic 40.0%
TTGCTGACATGAGATTGTCA+TGG + chr5.2:19209163-19209182 None:intergenic 40.0%
! CACTTCTTGTTTCACGATGA+GGG + chr5.2:19210058-19210077 None:intergenic 40.0%
! GCTGCTACTTAGAAACACAA+TGG + chr5.2:19209973-19209992 None:intergenic 40.0%
!! GCTGTTTTCATATGCTCTCT+TGG - chr5.2:19207472-19207491 MS.gene028008:intron 40.0%
!!! ACTGGCTTGTGTTTTGGTAT+TGG + chr5.2:19208637-19208656 None:intergenic 40.0%
AGTCTCACAAGTGCTTATCC+CGG + chr5.2:19207624-19207643 None:intergenic 45.0%
CCTCAGAAACTAAGGCTGAA+AGG + chr5.2:19207918-19207937 None:intergenic 45.0%
CCTCATCGTGAAACAAGAAG+TGG - chr5.2:19210056-19210075 MS.gene028008:CDS 45.0%
CCTTTCAGCCTTAGTTTCTG+AGG - chr5.2:19207915-19207934 MS.gene028008:intron 45.0%
CGAGCAGAATGGATGGATAA+AGG - chr5.2:19208029-19208048 MS.gene028008:intron 45.0%
CTTGTTTCACGATGAGGGAT+GGG + chr5.2:19210053-19210072 None:intergenic 45.0%
GGGAATTACGTGAAGTAAGG+TGG + chr5.2:19206874-19206893 None:intergenic 45.0%
TATTCACCAGGAGCCATGTA+AGG - chr5.2:19209010-19209029 MS.gene028008:intron 45.0%
TGCTAGTGAAGGACATGAGT+TGG - chr5.2:19208492-19208511 MS.gene028008:intron 45.0%
! CCACTTCTTGTTTCACGATG+AGG + chr5.2:19210059-19210078 None:intergenic 45.0%
! CTGGCATCGGATTCAAGATT+GGG - chr5.2:19208073-19208092 MS.gene028008:intron 45.0%
! TCTGGCATCGGATTCAAGAT+TGG - chr5.2:19208072-19208091 MS.gene028008:intron 45.0%
! TCTTGTTTCACGATGAGGGA+TGG + chr5.2:19210054-19210073 None:intergenic 45.0%
! TTTTCACCTTACATGGCTCC+TGG + chr5.2:19209019-19209038 None:intergenic 45.0%
!! AGATGGTGTTGTGACAATCG+AGG - chr5.2:19208221-19208240 MS.gene028008:intron 45.0%
!! TAAAGGACCCAAACTTGCTG+TGG + chr5.2:19208840-19208859 None:intergenic 45.0%
AAACATGGCTCCTCTCTACC+GGG - chr5.2:19207603-19207622 MS.gene028008:intron 50.0%
AAGTGCTTATCCCGGTAGAG+AGG + chr5.2:19207616-19207635 None:intergenic 50.0%
AGAACAGAAGGGGAAGCTTG+TGG - chr5.2:19210331-19210350 MS.gene028008:intron 50.0%
ATGTGACGCCACAGCAAGTT+TGG - chr5.2:19208829-19208848 MS.gene028008:intron 50.0%
CAAACATGGCTCCTCTCTAC+CGG - chr5.2:19207602-19207621 MS.gene028008:intron 50.0%
CAGACTCGCATCATCACTTC+TGG - chr5.2:19209874-19209893 MS.gene028008:intron 50.0%
GATGCGAGTCTGTGGTTACA+AGG + chr5.2:19209866-19209885 None:intergenic 50.0%
GATTGACAGGACGAGCAGAA+TGG - chr5.2:19208018-19208037 MS.gene028008:intron 50.0%
GGGAAGCTTGTGGTCTTCAA+AGG - chr5.2:19210341-19210360 MS.gene028008:intron 50.0%
GGGACTGAATCTCAAGGAAC+AGG - chr5.2:19208255-19208274 MS.gene028008:intron 50.0%
TGTGACGCCACAGCAAGTTT+GGG - chr5.2:19208830-19208849 MS.gene028008:intron 50.0%
! GAAGTGATGATGCGAGTCTG+TGG + chr5.2:19209874-19209893 None:intergenic 50.0%
!! ACCATTATAGGTGGTGGGAC+TGG - chr5.2:19209108-19209127 MS.gene028008:intron 50.0%
!! AGCCAGAGCTAGTGGGTTAA+TGG + chr5.2:19209210-19209229 None:intergenic 50.0%
!! CCATTATAGGTGGTGGGACT+GGG - chr5.2:19209109-19209128 MS.gene028008:intron 50.0%
!! CGCTTTGGGACTGAATCTCA+AGG - chr5.2:19208249-19208268 MS.gene028008:intron 50.0%
CCCAGTCCCACCACCTATAA+TGG + chr5.2:19209112-19209131 None:intergenic 55.0%
CGGTAGAGAGGAGCCATGTT+TGG + chr5.2:19207604-19207623 None:intergenic 55.0%
GACAGGACGAGCAGAATGGA+TGG - chr5.2:19208022-19208041 MS.gene028008:intron 55.0%
GGCCATTAACCCACTAGCTC+TGG - chr5.2:19209205-19209224 MS.gene028008:intron 55.0%
ACCATGGGAGCCAGAGCTAG+TGG + chr5.2:19209218-19209237 None:intergenic 60.0%
CCATGGGAGCCAGAGCTAGT+GGG + chr5.2:19209217-19209236 None:intergenic 60.0%
!! CCCACTAGCTCTGGCTCCCA+TGG - chr5.2:19209214-19209233 MS.gene028008:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 19206826 19210403 19206826 ID=MS.gene028008
chr5.2 mRNA 19206826 19210403 19206826 ID=MS.gene028008.t1;Parent=MS.gene028008
chr5.2 exon 19210345 19210403 19210345 ID=MS.gene028008.t1.exon1;Parent=MS.gene028008.t1
chr5.2 CDS 19210345 19210403 19210345 ID=cds.MS.gene028008.t1;Parent=MS.gene028008.t1
chr5.2 exon 19209971 19210110 19209971 ID=MS.gene028008.t1.exon2;Parent=MS.gene028008.t1
chr5.2 CDS 19209971 19210110 19209971 ID=cds.MS.gene028008.t1;Parent=MS.gene028008.t1
chr5.2 exon 19209292 19209345 19209292 ID=MS.gene028008.t1.exon3;Parent=MS.gene028008.t1
chr5.2 CDS 19209292 19209345 19209292 ID=cds.MS.gene028008.t1;Parent=MS.gene028008.t1
chr5.2 exon 19209114 19209202 19209114 ID=MS.gene028008.t1.exon4;Parent=MS.gene028008.t1
chr5.2 CDS 19209114 19209202 19209114 ID=cds.MS.gene028008.t1;Parent=MS.gene028008.t1
chr5.2 exon 19208953 19209028 19208953 ID=MS.gene028008.t1.exon5;Parent=MS.gene028008.t1
chr5.2 CDS 19208953 19209028 19208953 ID=cds.MS.gene028008.t1;Parent=MS.gene028008.t1
chr5.2 exon 19206826 19206947 19206826 ID=MS.gene028008.t1.exon6;Parent=MS.gene028008.t1
chr5.2 CDS 19206826 19206947 19206826 ID=cds.MS.gene028008.t1;Parent=MS.gene028008.t1
Gene Sequence

>MS.gene028008

ATGCAGAAATTGGGAGAATTCAAACTACCTCATTTCTTCAATTACCCACCTTACTTCACGTAATTCCCCTTTTTTCCTTCTAATTCATTTTTTTACTTTTCAAATTTACCAAATCAAAATATCAACTTTGTTGGTTAATTCCTTTTTTGTGCATATTCAAATCAACCAAGTAACTTTATTTCATATTTAAATTAAAATTTTCATTTTTTTTCAATGCATAATGCTTATTGTTATGATTTGTTGATAGTGAGAAAGTGATTGATTTGGATTTTGATTTTGGCTTTTGCTTTCAGTTTGCAGCCAGTAAGAGACACTAGAGAAAAGCAGATTCAATTATGGAAAGAGCTTATTTTGGATTATTGTAAAACACACAAGGTTTTTGTGATTGCTCTTGAAGAAGAGTTTCCTCTATTTACAAACACTGTAATTGAAAGTAAGCTTGAATTTAATTTCATGATTTCTGTGGAGATTATCGATATGTCTTATTTATAAATACTTTGCCTAATTGGATTGACTTATTTGAATTTGGCCCTGTTTAAATAAACAGCTTATTTGAATATTACATCATAAGATAAGCGCTTATGTATAAACTATTTCTATAGAAAAACATAAATTAAAGTTACATAGTTTTCTTATAAGCTGATAAGCTGTTTTCATATGCTCTCTTGGAGAACATATGAAAATAAGATGATACAATTTATGAACAATATCATAAGTTGTTTCCATAAGTTCTCTGAAACAGTCTCACAAAACTTATGCTAGTGGATAAGCAAATCCAAACATGGCTCCTCTCTACCGGGATAAGCACTTGTGAGACTATTTAGGAGAGTTTATGGAAACAACTTACGACATTTCCATAACCTGTTTTCAGATTATTTGCATAAACTCTCACCTATGAAAACAGCTTATAGCATATATAAAAATAGTTTTATGATATTTTTTTTCGTATGCTATAAGCGATTAATTAAGTTGTTTACCAAACATGCCTTTGTTTATTTTTGTTTTGTTTATATCCACCTTTTTGTTGAATGATTGTTTTTAGATTTTTGATAGTGCAGGATCTCTTACTAATGAAGCTAGAGAAGCGTTCCTTTCAGCCTTAGTTTCTGAGGGTATGCTTCATGATTTTTTATTTTTAGATTTGCAATACTTGTAATTGGGTTGAGGGAAAATGTCTCAAGTTTGTTATTCTGATTGACAGGACGAGCAGAATGGATGGATAAAGGACATAGAAAATGTCTTATTCTCTGGCATCGGATTCAAGATTGGGCTGACATTTTACTACAGTTTGTAAGTTTAAATTTCTAGTCTGATAATCACTTAATTAAAATAGTTATTTATTGCCCTGTGATTAAATTTACTGTGATGTTAATAGGCAAAAGATAATGGACTGGAAGATGGTGTTGTGACAATCGAGGAAATACGCTTTGGGACTGAATCTCAAGGAACAGGTAGTGTGTTGAATGATGCTTGTACGTTGCATTTAGTACTTTATTTTGAGATGGGTCAAGTTTGGCAATTATTTATGGTTCGTTATAGTTTTCTTATCATTTGTTGATGCATGATGATATTTAGGACTTAATGTTTATACTTTTTTTGGAATAGATGAGCTACACTCTATCACAAAACAAACATTTAAAATTTTAAAACTGTTTACAAATTTTACTGCTAGTGAAGGACATGAGTTGGTACAATGACATGCCACTTTTCTTGTTTACTTAGTGTTATGTAAATGCTTAACCCTCCAAATGGGTAAAATATAAGCTCAATGCTAAAATATCTAACAAGGCTATTCTCATTGTTAGAAGCCAATACCAAAACACAAGCCAGTGAAAATGCTATGCTTGAACTTGACAATTAACATAACTTTTCTGCCATATATCCTAAATGATTTTGTTCTTAAGATCGAAAGTCATTCATTTTAAAGTCCTTAAAATCATCATTGCACATTTATTAATTGCGGTCCTTCGACATAATGTTAGAGCTTGATTGTCTTTCACATAATGTGACGCCACAGCAAGTTTGGGTCCTTTACTATGAATTTCTCAAAACAGAAAGAAATGGGTAGAAAAAAAGGATAGAACCTTTGAGCTGTTTAGGATATGAAAGGTCGGAGAGAATATTGATCTTATATTAACCCTTATAGTATATTATGTCATCAGTTACATTATTTTTTAATTGACTTATTCACCAGGAGCCATGTAAGGTGAAAATCTCATATACTTTTATTTATAGACTAGTACCATGTAATCTAAGAACCATATACTACAGCAATGGAATTAACCATTATAGGTGGTGGGACTGGGAATAAGCTCAAGACAAAATGGACTACAACCATGACAATCTCATGTCAGCAAAAGATATGCCATTAAAATTATAGGCCATTAACCCACTAGCTCTGGCTCCCATGGTGTGCTTATTTCGAGAACATTTTTACTTATGGTGGAGGAGTGATTGTTTTATATTTTAATTTTTAAATATAAACGGAATTGAAATAAAAAGTGTAGATTGTGTAACTTTTAAGAAGTTACTCAAAATAAGTTGGTATGTGATCTGATTCTTCACGATTACTTTAAAATAGTAATCATTTCCTCAAAATAAGTTGGAAAGAGGGGAAGTAGATCAAATAAGGCGGGATTTTATTTTTTACTTTTTACTAACTTTTAAGTGGAGTTGAGACCATAGTTATACACGTGTGTGTACATGCACACACAAAATATAGTACGACATAGACCTAGGGATATATGTAACAGATTTTGAAAATTATCTGACACGGCACGCCTGTATTAATCACATAAAAGCTAGTATAAAATTATTAATATGAAAGTATGAAACATTAAAATATAAAGAGTGATTCAATATTTTAAAGGTTAAAACTAGTCATTGTAATTACTGTGTCATTTCAATCTAAATTGATATGAAAATTCAGTAATTAAAGTGAGAAATTGTAAAATATGAAGTGTGTCTCTGGTTACAAAAAATGAAGCGGAATCAATTCCAAAATAATGGACATGTTTTATTGGTGACTGTCATGTTTCCTTGTAACCACAGACTCGCATCATCACTTCTGGTCTGTGCGTCAGAATATATGCATTTTATTCAGGTAGCTTACAGAAGAACTTCATGATGCACTGAATTCAAAAGCCATTGTGTTTCTAAGTAGCAGCATAACATAGGTGGTGTAATTTTATATCATATGTTATAAACATCATATTGTCAGATAGCCCATCCCTCATCGTGAAACAAGAAGTGGCTTACATTAACTTCACGTCGAGTGTTGTCGCTTATTGTCAGATAGCCCTTGACCTGCTTCACAAACTTACATTTGTAAATTTATCGGTTGTCCTATTACTTCAGGGCGTTTTTTTTATAATGCTTACATATATTGTTAGTTAATGCATGCTGGACTGTGCAATTGTTTTGACATTGGCTCTCATTGCTTTTGATATACTGCAGAACTTCACGGAATAGACAGAACTATTTTGAACCGTGCATTGAAAATATTAGAACAGAAGGGGAAGCTTGTGGTCTTCAAAGGAACTTCAACAGATGATGAAGGAATTAAGTTTTCTGTATAA
Protein sequence

>MS.gene028008.t1

MQKLGEFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKTHKVFVIALEEEFPLFTNTVIERSLTNEAREAFLSALVSEGRAEWMDKGHRKCLILWHRIQDWADILLQFAKDNGLEDGVVTIEEIRFGTESQGTELHGIDRTILNRALKILEQKGKLVVFKGTSTDDEGIKFSV