AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027211

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027211.t1 MTR_3g048950 97.638 508 12 0 1 508 1 508 0.0 1009
MS.gene027211.t1 MTR_2g010180 33.556 450 252 12 90 529 179 591 1.47e-46 172
MS.gene027211.t1 MTR_2g010180 33.630 449 250 12 90 527 179 590 1.77e-45 169
MS.gene027211.t1 MTR_2g010180 33.630 449 250 12 90 527 193 604 1.84e-45 169
MS.gene027211.t1 MTR_3g096980 31.579 456 253 13 78 515 174 588 2.79e-45 168
MS.gene027211.t1 MTR_8g094740 31.166 446 255 12 85 515 181 589 6.79e-41 156
MS.gene027211.t1 MTR_8g080890 33.213 277 176 5 46 316 45 318 3.24e-34 135
MS.gene027211.t1 MTR_8g094740 30.591 389 235 8 85 472 181 535 5.48e-34 135
MS.gene027211.t1 MTR_8g080870 33.704 270 168 5 46 308 15 280 3.26e-32 129
MS.gene027211.t1 MTR_8g080840 29.254 335 218 6 46 364 44 375 1.40e-31 128
MS.gene027211.t1 MTR_4g074030 33.094 278 177 5 37 308 29 303 5.82e-31 126
MS.gene027211.t1 MTR_8g080880 32.374 278 177 5 46 316 44 317 7.18e-31 126
MS.gene027211.t1 MTR_8g097220 30.065 306 196 6 17 316 21 314 1.43e-30 125
MS.gene027211.t1 MTR_8g095600 31.429 245 152 4 43 282 163 396 1.04e-29 122
MS.gene027211.t1 MTR_8g095600 31.429 245 152 4 43 282 163 396 3.31e-29 122
MS.gene027211.t1 MTR_8g095600 31.429 245 152 4 43 282 163 396 3.42e-29 122
MS.gene027211.t1 MTR_8g095600 31.429 245 152 4 43 282 179 412 3.85e-29 122
MS.gene027211.t1 MTR_1g082750 46.429 112 60 0 141 252 63 174 7.67e-23 101
MS.gene027211.t1 MTR_4g094205 46.078 102 55 0 151 252 119 220 3.17e-19 91.7
MS.gene027211.t1 MTR_8g107280 41.818 110 64 0 143 252 101 210 5.65e-12 68.6
MS.gene027211.t1 MTR_8g107280 41.441 111 65 0 143 253 101 211 6.60e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027211.t1 AT3G25660 74.168 511 125 3 3 508 1 509 0.0 738
MS.gene027211.t1 AT5G64440 28.421 475 290 11 48 508 139 577 6.95e-43 162
MS.gene027211.t1 AT5G07360 30.290 241 154 3 43 278 205 436 2.38e-27 116
MS.gene027211.t1 AT5G07360 30.290 241 154 3 43 278 205 436 2.38e-27 116
MS.gene027211.t1 AT5G07360 30.290 241 147 4 43 278 205 429 1.11e-25 111
MS.gene027211.t1 AT4G34880 27.160 486 292 14 43 508 45 488 1.29e-25 110
MS.gene027211.t1 AT1G08980 45.299 117 64 0 141 257 64 180 3.13e-22 99.8
MS.gene027211.t1 AT5G09420 35.260 173 106 3 141 313 107 273 2.22e-19 92.0
MS.gene027211.t1 AT3G17970 42.308 104 60 0 149 252 102 205 9.39e-16 80.5
MS.gene027211.t1 AT3G17970 42.308 104 60 0 149 252 102 205 1.11e-15 80.5
MS.gene027211.t1 AT4G34880 23.542 480 271 15 43 508 45 442 1.31e-15 79.7

Find 188 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGAAGCTTCTGCATTTC+AGG 0.094048 3.4:-46231593 MS.gene027211:intron
CCAACCCGTGGGATGTTAAT+AGG 0.184295 3.4:-46229905 MS.gene027211:CDS
CCTTCAGCTGCTTATAAAAT+TGG 0.189323 3.4:-46228168 MS.gene027211:intron
GTCAAAATGAGATAGAAAAT+TGG 0.232450 3.4:+46229373 None:intergenic
CTTGATGCCATTGGCTGCTT+TGG 0.241283 3.4:-46229702 MS.gene027211:CDS
GAGGAAGTTGGTCCTCTTGC+TGG 0.242177 3.4:-46231793 MS.gene027211:CDS
CTTGAAGCTATTCCTTATAA+TGG 0.275796 3.4:+46228233 None:intergenic
GGTTCATCTGTCGCTGATGC+TGG 0.285798 3.4:-46229681 MS.gene027211:CDS
GGGATTGTTCGGAGGGGAGG+TGG 0.319324 3.4:+46231860 None:intergenic
TGTTGTTGGGAAGACGAATA+TGG 0.330954 3.4:-46231638 MS.gene027211:CDS
CCATGTGGATTTATTGAGAA+TGG 0.335224 3.4:-46227179 MS.gene027211:CDS
TGTCTCGCTATGATGGTATT+AGG 0.343270 3.4:-46229003 MS.gene027211:intron
TGGTGTTCTTGTTGCTGTTA+AGG 0.344765 3.4:-46231773 MS.gene027211:CDS
TATGGGCGCGTCTCAAGATT+TGG 0.346456 3.4:-46229747 MS.gene027211:CDS
CCCTTGAAAGGACTGAGAAT+TGG 0.350069 3.4:-46229326 MS.gene027211:CDS
CCTGTTGGCCTGCAAATGAT+TGG 0.354266 3.4:-46227143 MS.gene027211:CDS
TGGTGAGAAGGGAGTGGCGG+AGG 0.367615 3.4:+46231962 None:intergenic
ATTCTCCTCCATGCAATTGC+TGG 0.372958 3.4:-46229657 MS.gene027211:CDS
GAAGGGAGTGGCGGAGGGTG+AGG 0.374672 3.4:+46231968 None:intergenic
GGTGGAGGAAGGAACGGAGG+TGG 0.388259 3.4:+46231878 None:intergenic
ATGCTGCACCAATCATTTGC+AGG 0.388800 3.4:+46227135 None:intergenic
AAGACGAATATGGATGAGTT+TGG 0.396095 3.4:-46231628 MS.gene027211:CDS
ATTGTTCGGAGGGGAGGTGG+AGG 0.399809 3.4:+46231863 None:intergenic
GGGGTGCGGTTGTAGGTTGG+GGG 0.400004 3.4:+46232001 None:intergenic
CGGTGAGACGGAGGCGGGTG+AGG 0.400218 3.4:+46231905 None:intergenic
GAGTTGGGTGGGATTGTTGT+TGG 0.403136 3.4:-46231652 MS.gene027211:CDS
AACAGGTGAGAACCATTATA+AGG 0.404504 3.4:-46228245 MS.gene027211:intron
GGAGGGATTGTTCGGAGGGG+AGG 0.408320 3.4:+46231857 None:intergenic
CGGAGAGGGTGTTGGTGAGA+AGG 0.409143 3.4:+46231950 None:intergenic
TCAAAATGAGATAGAAAATT+GGG 0.409705 3.4:+46229374 None:intergenic
GAGGGTGAGGATTTGAGAGG+GGG 0.409941 3.4:+46231981 None:intergenic
ACCAATTCTCAGTCCTTTCA+AGG 0.410994 3.4:+46229325 None:intergenic
AGAGAGTGGAACGTGGGGTT+TGG 0.412341 3.4:+46232076 None:intergenic
GGAGAGGGTGTTGGTGAGAA+GGG 0.413113 3.4:+46231951 None:intergenic
GGAGGCGGGTGAGGTGGGAT+TGG 0.414605 3.4:+46231914 None:intergenic
GAAGGAACGGAGGTGGGGTT+CGG 0.415482 3.4:+46231885 None:intergenic
CAACCCGTGGGATGTTAATA+GGG 0.416432 3.4:-46229904 MS.gene027211:CDS
AGTAGCTTGGGTGGTGATTG+TGG 0.416830 3.4:+46232032 None:intergenic
GTAGGTTTGAAGCCAACATA+TGG 0.418336 3.4:-46229765 MS.gene027211:CDS
GGGGTTCGGTGAGACGGAGG+CGG 0.420001 3.4:+46231899 None:intergenic
AACTGCAGCTGCCGATCCTC+CGG 0.421581 3.4:+46229866 None:intergenic
AGTTGGGTGGGATTGTTGTT+GGG 0.424283 3.4:-46231651 MS.gene027211:CDS
CCAATCATTTGCAGGCCAAC+AGG 0.424765 3.4:+46227143 None:intergenic
GGAGGTGGAGGAAGGAACGG+AGG 0.426202 3.4:+46231875 None:intergenic
GATGAGGTCGGTGGCGGAGA+GGG 0.429116 3.4:+46231936 None:intergenic
GTGGAGGAAGGAACGGAGGT+GGG 0.435354 3.4:+46231879 None:intergenic
GAATCCCGAGCCAAAGGGTT+AGG 0.438985 3.4:-46228796 MS.gene027211:CDS
GATCCTCCGGATGATCCTCC+TGG 0.440465 3.4:+46229879 None:intergenic
TACACTAAACTTCGTGTTGA+CGG 0.440960 3.4:-46227083 MS.gene027211:CDS
ACACTAAACTTCGTGTTGAC+GGG 0.441732 3.4:-46227082 MS.gene027211:CDS
CTAGCTCATCAGCATAAACT+TGG 0.445051 3.4:+46228833 None:intergenic
GGGGTGTGTGAGAGTAGCTT+GGG 0.445406 3.4:+46232020 None:intergenic
CGAGGATACTTGAGGGTTAT+CGG 0.452203 3.4:-46231711 MS.gene027211:CDS
TGAGACGGAGGCGGGTGAGG+TGG 0.460578 3.4:+46231908 None:intergenic
GTTCATCTGTCGCTGATGCT+GGG 0.461237 3.4:-46229680 MS.gene027211:CDS
CTGAGCGAGGAGGGATTGTT+CGG 0.461679 3.4:+46231849 None:intergenic
GGGACATATGCCCTTTCAGC+TGG 0.466577 3.4:-46228598 MS.gene027211:CDS
TAGGTAAATGTCAACCTAGC+TGG 0.467203 3.4:-46227221 MS.gene027211:CDS
AGAACCTAACCCTTTGGCTC+GGG 0.470303 3.4:+46228792 None:intergenic
TACCTCAGAACCTAACCCTT+TGG 0.473794 3.4:+46228786 None:intergenic
TTCACCGCCGTCGCATCAAA+CGG 0.475456 3.4:+46231685 None:intergenic
GTATCGTTGGGAAGTGATAC+TGG 0.476953 3.4:-46229825 MS.gene027211:CDS
GTCGGTGGCGGAGAGGGTGT+TGG 0.480489 3.4:+46231942 None:intergenic
TCCAACTTGTCTCGCTATGA+TGG 0.480589 3.4:-46229010 MS.gene027211:CDS
GTGAAGAGAGTTAAGGAGTT+GGG 0.481622 3.4:-46231667 MS.gene027211:CDS
GGAGGGTGAGGATTTGAGAG+GGG 0.482570 3.4:+46231980 None:intergenic
CGGCAGCTGCAGTTTCTGCC+AGG 0.482964 3.4:-46229857 MS.gene027211:CDS
GGGTTCGGTGAGACGGAGGC+GGG 0.484229 3.4:+46231900 None:intergenic
GATGAGCTAGACTCTCTCTA+TGG 0.484664 3.4:-46228820 MS.gene027211:CDS
GAGACGGAGGCGGGTGAGGT+GGG 0.484958 3.4:+46231909 None:intergenic
GGAACGTGGGGTTTGGAGTG+TGG 0.485069 3.4:+46232083 None:intergenic
TGCTGGCAACCCAAGTGAAA+AGG 0.489336 3.4:+46229063 None:intergenic
GAATATGGATGAGTTTGGTA+TGG 0.494732 3.4:-46231623 MS.gene027211:CDS
ATTGAAGATGGTGTTGATGC+TGG 0.494844 3.4:-46229287 MS.gene027211:CDS
TGCCGTCGACTGGTGGGTCG+AGG 0.495461 3.4:-46231729 MS.gene027211:CDS
TGGTGATTGTGGATGATGGA+AGG 0.497543 3.4:+46232043 None:intergenic
GGGTGAGGTGGGATTGGATG+AGG 0.497563 3.4:+46231920 None:intergenic
CAACGATACAACACATTGCC+TGG 0.499311 3.4:+46229839 None:intergenic
TGGGATGTTAATAGGGTGCC+AGG 0.501326 3.4:-46229897 MS.gene027211:CDS
TAAGCAGCTGAAGGAGCTGC+AGG 0.503173 3.4:+46228177 None:intergenic
GGATTGGATGAGGTCGGTGG+CGG 0.503997 3.4:+46231930 None:intergenic
GGAGGTGGGGTTCGGTGAGA+CGG 0.506358 3.4:+46231893 None:intergenic
CGAACAATCCCTCCTCGCTC+AGG 0.506581 3.4:-46231848 MS.gene027211:CDS
GGGTGTTGGTGAGAAGGGAG+TGG 0.507696 3.4:+46231956 None:intergenic
AGGGTGCCAGGAGGATCATC+CGG 0.508700 3.4:-46229885 MS.gene027211:CDS
GGTGGGGTTCGGTGAGACGG+AGG 0.508984 3.4:+46231896 None:intergenic
TCGGCCGCCGTTTGATGCGA+CGG 0.509581 3.4:-46231692 MS.gene027211:CDS
CATTATAAGGAATAGCTTCA+AGG 0.510073 3.4:-46228232 MS.gene027211:CDS
GGTGAGAAGGGAGTGGCGGA+GGG 0.510097 3.4:+46231963 None:intergenic
GCGGAGGGTGAGGATTTGAG+AGG 0.510822 3.4:+46231978 None:intergenic
CCTAGCTGGACTACCTGCCT+TGG 0.511239 3.4:-46227207 MS.gene027211:CDS
ATCATAGTAACCAGCTGAAA+GGG 0.518202 3.4:+46228588 None:intergenic
ATTCGTGAAACTATTGAAGA+TGG 0.519456 3.4:-46229299 MS.gene027211:CDS
CTCGACAGTAGAATCGCTGC+GGG 0.520078 3.4:-46231817 MS.gene027211:CDS
GAATAGCTTCAAGGAAGCGC+TGG 0.521105 3.4:-46228223 MS.gene027211:CDS
TTGGAAAGTAAGCCCTTGAA+AGG 0.521290 3.4:-46229338 MS.gene027211:CDS
GTGTGTGAGAGTAGCTTGGG+TGG 0.521382 3.4:+46232023 None:intergenic
TGGGTGGTGATTGTGGATGA+TGG 0.522453 3.4:+46232039 None:intergenic
TGGAGGAAGGAACGGAGGTG+GGG 0.527467 3.4:+46231880 None:intergenic
CCAATTCTCAGTCCTTTCAA+GGG 0.528903 3.4:+46229326 None:intergenic
AGGAGGATCATCCGGAGGAT+CGG 0.529125 3.4:-46229877 MS.gene027211:CDS
AGGGGAGGTGGAGGAAGGAA+CGG 0.529981 3.4:+46231872 None:intergenic
ATATTACAAACGAGCGCAGC+AGG 0.530821 3.4:-46228563 MS.gene027211:intron
CTTGAGACGCGCCCATATGT+TGG 0.532165 3.4:+46229753 None:intergenic
CGTCTCAAGATTTGGACTCA+TGG 0.533310 3.4:-46229739 MS.gene027211:CDS
GGGAAATCAAGATATCATAT+TGG 0.533729 3.4:+46228199 None:intergenic
GTCATGTGCCTGAGCGAGGA+GGG 0.533744 3.4:+46231840 None:intergenic
GCTGATATGCCGTCGACTGG+TGG 0.534187 3.4:-46231736 MS.gene027211:CDS
CGGAGGGTGAGGATTTGAGA+GGG 0.535379 3.4:+46231979 None:intergenic
CACTAAACTTCGTGTTGACG+GGG 0.536615 3.4:-46227081 MS.gene027211:CDS
GGATCGACTGGCCTTCCTGT+TGG 0.537162 3.4:-46227158 MS.gene027211:CDS
AAGGGAGAAGCGTGAGAGAG+TGG 0.537183 3.4:+46232062 None:intergenic
ACCATCATAGCGAGACAAGT+TGG 0.538119 3.4:+46229009 None:intergenic
CATCATAGTAACCAGCTGAA+AGG 0.540452 3.4:+46228587 None:intergenic
GCGAGGAGGGATTGTTCGGA+GGG 0.542708 3.4:+46231853 None:intergenic
TATCATGACCAGCAATTGCA+TGG 0.543365 3.4:+46229649 None:intergenic
TGTTGGTGAGAAGGGAGTGG+CGG 0.543948 3.4:+46231959 None:intergenic
AAGAGAGTTAAGGAGTTGGG+TGG 0.544145 3.4:-46231664 MS.gene027211:CDS
TAGGTTTGAAGCCAACATAT+GGG 0.545372 3.4:-46229764 MS.gene027211:CDS
CAGAACCTAACCCTTTGGCT+CGG 0.546221 3.4:+46228791 None:intergenic
TGGTGGAAGTGTGAGGCAGC+CGG 0.546383 3.4:-46229805 MS.gene027211:CDS
GATCCTTTGGCTATGTATGC+TGG 0.549623 3.4:-46228048 MS.gene027211:CDS
AATATGGATGAGTTTGGTAT+GGG 0.549939 3.4:-46231622 MS.gene027211:CDS
GGCACCCTATTAACATCCCA+CGG 0.550526 3.4:+46229900 None:intergenic
AGAGAGTTAAGGAGTTGGGT+GGG 0.551590 3.4:-46231663 MS.gene027211:CDS
TGATGCCACATCAAGTAAGC+AGG 0.552918 3.4:-46229622 MS.gene027211:intron
CAGGCAATGTGTTGTATCGT+TGG 0.553276 3.4:-46229838 MS.gene027211:CDS
CCACATGGTAAAACCAAGGC+AGG 0.555507 3.4:+46227194 None:intergenic
AGCGAGGAGGGATTGTTCGG+AGG 0.556460 3.4:+46231852 None:intergenic
TTCGGAGGGGAGGTGGAGGA+AGG 0.557260 3.4:+46231867 None:intergenic
TATGGTGAATCCCGAGCCAA+AGG 0.561140 3.4:-46228802 MS.gene027211:CDS
GATTGGTGCAGCATTTAATG+AGG 0.564316 3.4:-46227126 MS.gene027211:CDS
TTTATTGAGAATGGATCGAC+TGG 0.565848 3.4:-46227170 MS.gene027211:CDS
CCAAGGCAGGTAGTCCAGCT+AGG 0.568026 3.4:+46227207 None:intergenic
CTGATATGCCGTCGACTGGT+GGG 0.569688 3.4:-46231735 MS.gene027211:CDS
CGAGGTCATGTGCCTGAGCG+AGG 0.571136 3.4:+46231836 None:intergenic
AGCCAAAGGGTTAGGTTCTG+AGG 0.574572 3.4:-46228788 MS.gene027211:intron
TGGTGGGTCGAGGATACTTG+AGG 0.574780 3.4:-46231719 MS.gene027211:CDS
TCATACCTGCTTACTTGATG+TGG 0.577058 3.4:+46229617 None:intergenic
GACGGCGGTGAAGAGAGTTA+AGG 0.579689 3.4:-46231674 MS.gene027211:CDS
AGGGTGAGGATTTGAGAGGG+GGG 0.579792 3.4:+46231982 None:intergenic
AGGCAATGTGTTGTATCGTT+GGG 0.585368 3.4:-46229837 MS.gene027211:CDS
AGCAGCTGAAGGAGCTGCAG+GGG 0.585773 3.4:+46228179 None:intergenic
CTGAAATGCAGAAGCTTCAG+TGG 0.585857 3.4:+46231594 None:intergenic
ACAACACCGCAAAATGATGC+CGG 0.586556 3.4:+46229786 None:intergenic
GAGGTGGGATTGGATGAGGT+CGG 0.587835 3.4:+46231924 None:intergenic
TGTTAAGGATAATATATGTA+CGG 0.587925 3.4:-46231758 MS.gene027211:CDS
GGTGATTGTGGATGATGGAA+GGG 0.588647 3.4:+46232044 None:intergenic
GGATGAGGTCGGTGGCGGAG+AGG 0.590602 3.4:+46231935 None:intergenic
AGCGTGAGAGAGTGGAACGT+GGG 0.590701 3.4:+46232070 None:intergenic
GGTGAAGAGAGTTAAGGAGT+TGG 0.591063 3.4:-46231668 MS.gene027211:CDS
GCGTCATCACTTGATGCCAT+TGG 0.595721 3.4:-46229711 MS.gene027211:CDS
GTGGGATTGGATGAGGTCGG+TGG 0.596179 3.4:+46231927 None:intergenic
GGTGGGTCGAGGATACTTGA+GGG 0.597676 3.4:-46231718 MS.gene027211:CDS
AATAGGTGACTGCCAACCCG+TGG 0.597933 3.4:-46229917 MS.gene027211:intron
CCTATTAACATCCCACGGGT+TGG 0.601481 3.4:+46229905 None:intergenic
ACGGCTGATATGCCGTCGAC+TGG 0.602236 3.4:-46231739 MS.gene027211:CDS
ATCCTCGACCCACCAGTCGA+CGG 0.609093 3.4:+46231727 None:intergenic
TCATTTGCAGGCCAACAGGA+AGG 0.610270 3.4:+46227147 None:intergenic
GCAACAAGAACACCAGCAAG+AGG 0.610406 3.4:+46231781 None:intergenic
AAAGCGAGGACATAGTATGC+TGG 0.610724 3.4:+46229046 None:intergenic
AGATGAACCAAAGCAGCCAA+TGG 0.614909 3.4:+46229695 None:intergenic
AAGCAGCTGAAGGAGCTGCA+GGG 0.619430 3.4:+46228178 None:intergenic
CGACAGTAGAATCGCTGCGG+GGG 0.620006 3.4:-46231815 MS.gene027211:CDS
GCACCCTATTAACATCCCAC+GGG 0.621175 3.4:+46229901 None:intergenic
CCGCAGCGATTCTACTGTCG+AGG 0.622735 3.4:+46231818 None:intergenic
ATGGTGAATCCCGAGCCAAA+GGG 0.624972 3.4:-46228801 MS.gene027211:CDS
AAGCGTGAGAGAGTGGAACG+TGG 0.633684 3.4:+46232069 None:intergenic
ATATGGATGAGTTTGGTATG+GGG 0.639425 3.4:-46231621 MS.gene027211:CDS
GGCAACCCAAGTGAAAAGGA+TGG 0.642277 3.4:+46229067 None:intergenic
ACCGCCGTCGCATCAAACGG+CGG 0.647453 3.4:+46231688 None:intergenic
ATTAGGATGCTCTGTGAACG+AGG 0.648039 3.4:-46229222 MS.gene027211:intron
CCATTCTCAATAAATCCACA+TGG 0.649598 3.4:+46227179 None:intergenic
TCACCAGCATACATAGCCAA+AGG 0.651194 3.4:+46228045 None:intergenic
GGTCATGTGCCTGAGCGAGG+AGG 0.653457 3.4:+46231839 None:intergenic
GCCGCCGTTTGATGCGACGG+CGG 0.654353 3.4:-46231689 MS.gene027211:CDS
ATAGGTGACTGCCAACCCGT+GGG 0.663939 3.4:-46229916 MS.gene027211:intron
AAGATGATTCAGACAAAGCG+AGG 0.664996 3.4:+46229032 None:intergenic
AAATCCACATGGTAAAACCA+AGG 0.672604 3.4:+46227190 None:intergenic
CGAGGAGGGATTGTTCGGAG+GGG 0.674905 3.4:+46231854 None:intergenic
GCGTGAGAGAGTGGAACGTG+GGG 0.681489 3.4:+46232071 None:intergenic
GTGATACTGGTGGAAGTGTG+AGG 0.689164 3.4:-46229812 MS.gene027211:CDS
CCTCGACAGTAGAATCGCTG+CGG 0.691096 3.4:-46231818 MS.gene027211:CDS
GTGCCAGGAGGATCATCCGG+AGG 0.699333 3.4:-46229882 MS.gene027211:CDS
TCGACAGTAGAATCGCTGCG+GGG 0.719921 3.4:-46231816 MS.gene027211:CDS
CATGACCAGCAATTGCATGG+AGG 0.725633 3.4:+46229652 None:intergenic
GATGTTAATAGGGTGCCAGG+AGG 0.756629 3.4:-46229894 MS.gene027211:CDS
TCGTTGGGAAGTGATACTGG+TGG 0.795744 3.4:-46229822 MS.gene027211:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATACAACATAAATAT+TGG - chr3.4:46231677-46231696 MS.gene027211:CDS 10.0%
!!! TCACTTTAAAATTTAAATTA+TGG + chr3.4:46227673-46227692 None:intergenic 10.0%
!! ATTGTTAAAAGGTAATTAAT+TGG + chr3.4:46229731-46229750 None:intergenic 15.0%
!! CTTAAAATTATTGTCAAATT+AGG - chr3.4:46227925-46227944 MS.gene027211:intron 15.0%
!! GAATTGAAATAAAATTAACT+AGG + chr3.4:46228014-46228033 None:intergenic 15.0%
!! TGAAAATATATATAAAGAGA+GGG + chr3.4:46227596-46227615 None:intergenic 15.0%
!! TGATTAATTAAGATATTTCT+TGG + chr3.4:46231444-46231463 None:intergenic 15.0%
!! TTGAAAATATATATAAAGAG+AGG + chr3.4:46227597-46227616 None:intergenic 15.0%
!!! ACTTTATTTTATGTTTTTCT+TGG - chr3.4:46230625-46230644 MS.gene027211:intron 15.0%
!!! CTAATTTGACAATAATTTTA+AGG + chr3.4:46227927-46227946 None:intergenic 15.0%
!!! TTCATTTATTTTAGAAGTTT+GGG - chr3.4:46230858-46230877 MS.gene027211:intron 15.0%
!!! TTCTATTTTTAATACATTTC+AGG - chr3.4:46230516-46230535 MS.gene027211:intron 15.0%
!!! TTTCATTTATTTTAGAAGTT+TGG - chr3.4:46230857-46230876 MS.gene027211:intron 15.0%
!!! TTTGGTTTTTTTTTTTTATC+CGG - chr3.4:46228424-46228443 MS.gene027211:intron 15.0%
!! AAACATATCTCAGTTATAAA+TGG + chr3.4:46229195-46229214 None:intergenic 20.0%
!! AACATATCTCAGTTATAAAT+GGG + chr3.4:46229194-46229213 None:intergenic 20.0%
!! AAGTATTTCATTCTTCTTAT+TGG - chr3.4:46231147-46231166 MS.gene027211:intron 20.0%
!! AATACCAATGCATATAAAAT+TGG + chr3.4:46230485-46230504 None:intergenic 20.0%
!! ACAAAATAAAACATTGTGTT+CGG + chr3.4:46230235-46230254 None:intergenic 20.0%
!! AGCAAAAAAAGAATATGAAA+TGG + chr3.4:46228384-46228403 None:intergenic 20.0%
!! ATCCTTCTTAATTTCAAATT+TGG - chr3.4:46230405-46230424 MS.gene027211:intron 20.0%
!! ATCTAAAAGTTCAAAAAACA+AGG + chr3.4:46228558-46228577 None:intergenic 20.0%
!! ATGGTAAGTTGTTAAAATAT+AGG - chr3.4:46228214-46228233 MS.gene027211:CDS 20.0%
!! ATTACAAAACATACAAAAAG+TGG - chr3.4:46229086-46229105 MS.gene027211:intron 20.0%
!! ATTGTATAGGATTATTGTTT+AGG + chr3.4:46231745-46231764 None:intergenic 20.0%
!! ATTTGAAAGTTTAATAGAGT+CGG - chr3.4:46228274-46228293 MS.gene027211:intron 20.0%
!! TCAAAATGAGATAGAAAATT+GGG + chr3.4:46229786-46229805 None:intergenic 20.0%
!! TCTAAAAGTTCAAAAAACAA+GGG + chr3.4:46228557-46228576 None:intergenic 20.0%
!! TGGTAAGTTGTTAAAATATA+GGG - chr3.4:46228215-46228234 MS.gene027211:CDS 20.0%
!! TGTTAAGGATAATATATGTA+CGG - chr3.4:46227399-46227418 MS.gene027211:intron 20.0%
!! TTAAAGTGAATATTAATCTC+AGG - chr3.4:46227684-46227703 MS.gene027211:intron 20.0%
!! TTAACAACATATAATGAGAT+CGG + chr3.4:46231201-46231220 None:intergenic 20.0%
!! TTACAAAACATACAAAAAGT+GGG - chr3.4:46229087-46229106 MS.gene027211:intron 20.0%
!! TTCCAATATTTATAATGTCA+GGG - chr3.4:46228304-46228323 MS.gene027211:intron 20.0%
!! TTGCAATTTCAATAACTTTA+GGG - chr3.4:46227962-46227981 MS.gene027211:intron 20.0%
!! TTTCCAATATTTATAATGTC+AGG - chr3.4:46228303-46228322 MS.gene027211:intron 20.0%
!! TTTGCAATTTCAATAACTTT+AGG - chr3.4:46227961-46227980 MS.gene027211:intron 20.0%
!!! AATTAATTGGCTTAATAACA+AGG + chr3.4:46229718-46229737 None:intergenic 20.0%
!!! AGTTAGTTTTTTTGTTTGTT+TGG - chr3.4:46227735-46227754 MS.gene027211:intron 20.0%
!!! CTTTTTTTCATTATTAGCAA+TGG - chr3.4:46229600-46229619 MS.gene027211:intron 20.0%
!!! TAATGTTTGCTTTTCTTTAT+TGG - chr3.4:46231898-46231917 MS.gene027211:CDS 20.0%
!!! TATTTTATGTTTTTCTTGGT+GGG - chr3.4:46230629-46230648 MS.gene027211:intron 20.0%
!!! TCATTGATAATCATTTTGTT+TGG - chr3.4:46230266-46230285 MS.gene027211:intron 20.0%
!!! TGAATCAAGTTTAATTTCAA+TGG + chr3.4:46231318-46231337 None:intergenic 20.0%
!!! TTATTTTATGTTTTTCTTGG+TGG - chr3.4:46230628-46230647 MS.gene027211:intron 20.0%
! AAATGTAGGGAATAAATTGA+TGG - chr3.4:46228195-46228214 MS.gene027211:CDS 25.0%
! ACTAATAAAAAATGCACTTG+TGG + chr3.4:46227831-46227850 None:intergenic 25.0%
! AGCTAACAATGTAATTTATC+AGG - chr3.4:46229755-46229774 MS.gene027211:CDS 25.0%
! AGTTATAGAGAAAAATGAAG+TGG + chr3.4:46229965-46229984 None:intergenic 25.0%
! ATAGCAAGTGGTTAAATAAA+GGG - chr3.4:46228247-46228266 MS.gene027211:intron 25.0%
! ATGGTTCAAAGTTTCAAATA+AGG + chr3.4:46227654-46227673 None:intergenic 25.0%
! ATTCTTAGATACATTAGTGT+GGG - chr3.4:46228615-46228634 MS.gene027211:CDS 25.0%
! CGTCTCTATATTTATTGTAT+AGG + chr3.4:46231758-46231777 None:intergenic 25.0%
! CTTAATTAATCAATAACTGC+CGG - chr3.4:46231452-46231471 MS.gene027211:intron 25.0%
! GAAGAATGAAAATTGCAAAT+CGG - chr3.4:46228909-46228928 MS.gene027211:intron 25.0%
! GATGCATATGTTAATTCAAT+AGG - chr3.4:46229223-46229242 MS.gene027211:CDS 25.0%
! GATTATGAGTGTTTGAAAAA+AGG - chr3.4:46228096-46228115 MS.gene027211:intron 25.0%
! GATTGAATATATACCATCTA+AGG + chr3.4:46231413-46231432 None:intergenic 25.0%
! GTCAAAATGAGATAGAAAAT+TGG + chr3.4:46229787-46229806 None:intergenic 25.0%
! GTTAGCTATTCATTGTTAAA+AGG + chr3.4:46229742-46229761 None:intergenic 25.0%
! TAACAATGTAATTTATCAGG+AGG - chr3.4:46229758-46229777 MS.gene027211:CDS 25.0%
! TACAAAACATACAAAAAGTG+GGG - chr3.4:46229088-46229107 MS.gene027211:intron 25.0%
! TATATACTTGACACATGTTA+AGG + chr3.4:46231497-46231516 None:intergenic 25.0%
! TATATCTTCTGAGTATGTTA+GGG - chr3.4:46228150-46228169 MS.gene027211:intron 25.0%
! TCTCTACGTCTTAAATATAA+TGG + chr3.4:46228974-46228993 None:intergenic 25.0%
! TGAAAAGAAAAATGATCCTT+TGG - chr3.4:46231096-46231115 MS.gene027211:intron 25.0%
! TGAAATTAAGAAGGATTGAA+AGG + chr3.4:46230401-46230420 None:intergenic 25.0%
! TGAATTAAATTTGTGAGCAT+GGG - chr3.4:46228858-46228877 MS.gene027211:intron 25.0%
! TGACTGAATTCATTATCATT+GGG + chr3.4:46230682-46230701 None:intergenic 25.0%
! TGTTGAATTAGAGAAAATAG+AGG - chr3.4:46231594-46231613 MS.gene027211:CDS 25.0%
! TTAATTAATCAATAACTGCC+GGG - chr3.4:46231453-46231472 MS.gene027211:intron 25.0%
! TTACTACTAACATTACAAAC+TGG + chr3.4:46228773-46228792 None:intergenic 25.0%
! TTATATCTTCTGAGTATGTT+AGG - chr3.4:46228149-46228168 MS.gene027211:intron 25.0%
! TTGAATTAAATTTGTGAGCA+TGG - chr3.4:46228857-46228876 MS.gene027211:intron 25.0%
! TTTAAGGACTAAATTAACCA+AGG + chr3.4:46227911-46227930 None:intergenic 25.0%
!! AACAACATTTTTACCAAACA+TGG + chr3.4:46229574-46229593 None:intergenic 25.0%
!! AGCCAAATTTGAAATTAAGA+AGG + chr3.4:46230410-46230429 None:intergenic 25.0%
!! TGATCCAATTTTATATGCAT+TGG - chr3.4:46230478-46230497 MS.gene027211:intron 25.0%
!! TTGGATCAATTCTTTTATAC+AGG + chr3.4:46230466-46230485 None:intergenic 25.0%
!!! ATAATCATTTTGTTTGGCTT+GGG - chr3.4:46230272-46230291 MS.gene027211:intron 25.0%
!!! GTGAAAATGAGAATTTTGAT+GGG - chr3.4:46230538-46230557 MS.gene027211:intron 25.0%
!!! TGAAAATGAGAATTTTGATG+GGG - chr3.4:46230539-46230558 MS.gene027211:intron 25.0%
!!! TTGGTGGTTTTTCTTTTTAT+AGG - chr3.4:46231917-46231936 MS.gene027211:CDS 25.0%
AATATGGATGAGTTTGGTAT+GGG - chr3.4:46227535-46227554 MS.gene027211:intron 30.0%
ACAAACAAACAAACAACTAC+CGG + chr3.4:46228446-46228465 None:intergenic 30.0%
ACAACCTAAAAACAGATTTG+AGG + chr3.4:46227863-46227882 None:intergenic 30.0%
ACCTTCTCTATATCTAGATA+TGG - chr3.4:46230298-46230317 MS.gene027211:intron 30.0%
AGAAAAGCAAACATTATGCT+CGG + chr3.4:46231894-46231913 None:intergenic 30.0%
ATAGTAAGCGGTTAAATGTA+GGG - chr3.4:46228182-46228201 MS.gene027211:CDS 30.0%
ATATCTAGATATAGAGAAGG+TGG + chr3.4:46230299-46230318 None:intergenic 30.0%
ATTCGTGAAACTATTGAAGA+TGG - chr3.4:46229858-46229877 MS.gene027211:CDS 30.0%
CATTATAAGGAATAGCTTCA+AGG - chr3.4:46230925-46230944 MS.gene027211:intron 30.0%
CTAACATGCAATAATGCAAA+AGG + chr3.4:46231034-46231053 None:intergenic 30.0%
CTTGAAGCTATTCCTTATAA+TGG + chr3.4:46230927-46230946 None:intergenic 30.0%
GATAGCAAGTGGTTAAATAA+AGG - chr3.4:46228246-46228265 MS.gene027211:intron 30.0%
GATTCTTAGATACATTAGTG+TGG - chr3.4:46228614-46228633 MS.gene027211:CDS 30.0%
GGCTCTTTGTTAAATATGAA+GGG - chr3.4:46229653-46229672 MS.gene027211:CDS 30.0%
GGGAAATCAAGATATCATAT+TGG + chr3.4:46230961-46230980 None:intergenic 30.0%
GTCCCTGACATTATAAATAT+TGG + chr3.4:46228309-46228328 None:intergenic 30.0%
GTGACTGAATTCATTATCAT+TGG + chr3.4:46230683-46230702 None:intergenic 30.0%
TAACTGAGATATGTTTACTC+AGG - chr3.4:46229199-46229218 MS.gene027211:intron 30.0%
TATAGAGAAAAATGAAGTGG+AGG + chr3.4:46229962-46229981 None:intergenic 30.0%
TCCATATCTAGATATAGAGA+AGG + chr3.4:46230302-46230321 None:intergenic 30.0%
TGTTAGTAGTAAATGTGAGA+AGG - chr3.4:46228781-46228800 MS.gene027211:intron 30.0%
TTACATAGAACACGCATAAA+AGG + chr3.4:46230894-46230913 None:intergenic 30.0%
TTCTTAGATACATTAGTGTG+GGG - chr3.4:46228616-46228635 MS.gene027211:CDS 30.0%
! AAGTTAATGGACAGATGAAA+AGG + chr3.4:46230057-46230076 None:intergenic 30.0%
! AATAGTGTTAGTTTGAGGTT+TGG - chr3.4:46231269-46231288 MS.gene027211:intron 30.0%
! AGACAAATAGTGTTAGTTTG+AGG - chr3.4:46231264-46231283 MS.gene027211:intron 30.0%
! AGTTAATGGACAGATGAAAA+GGG + chr3.4:46230056-46230075 None:intergenic 30.0%
! ATATCCTACAGTTGCTTTAT+GGG - chr3.4:46228932-46228951 MS.gene027211:intron 30.0%
! ATGATAATGAATTCAGTCAC+AGG - chr3.4:46230683-46230702 MS.gene027211:intron 30.0%
! ATGATGTTTGATGATCCATT+TGG - chr3.4:46228658-46228677 MS.gene027211:intron 30.0%
! CAGCAGAGTCAATTTTATAT+AGG - chr3.4:46231646-46231665 MS.gene027211:CDS 30.0%
! GGTGAAAATGAGAATTTTGA+TGG - chr3.4:46230537-46230556 MS.gene027211:intron 30.0%
! TATGAGTTTTTCACCATGTT+TGG - chr3.4:46229558-46229577 MS.gene027211:intron 30.0%
! TCTTTGAATGTGTTTTTCCT+TGG - chr3.4:46227891-46227910 MS.gene027211:intron 30.0%
! TTTTCTCTCCAAATAAATGC+TGG + chr3.4:46228886-46228905 None:intergenic 30.0%
!! GATAATCATTTTGTTTGGCT+TGG - chr3.4:46230271-46230290 MS.gene027211:intron 30.0%
!! TAGTCCTCAAATCTGTTTTT+AGG - chr3.4:46227856-46227875 MS.gene027211:intron 30.0%
!! TGTTTGCTTTTCTTTATTGG+TGG - chr3.4:46231901-46231920 MS.gene027211:CDS 30.0%
!! TTAACCACTTGCTATCAATT+AGG + chr3.4:46228242-46228261 None:intergenic 30.0%
!! TTTTGACTATGCAAGTTCTT+TGG - chr3.4:46229800-46229819 MS.gene027211:CDS 30.0%
!!! GTGTTTTTGTTTTCCAGTTT+GGG - chr3.4:46228492-46228511 MS.gene027211:intron 30.0%
!!! TGTGTTTTTGTTTTCCAGTT+TGG - chr3.4:46228491-46228510 MS.gene027211:intron 30.0%
AAACTCTTGCTTCATTTCCT+AGG - chr3.4:46230813-46230832 MS.gene027211:intron 35.0%
AAAGAATAGTGTCGTATGCT+AGG - chr3.4:46228711-46228730 MS.gene027211:intron 35.0%
AAATCCACATGGTAAAACCA+AGG + chr3.4:46231970-46231989 None:intergenic 35.0%
AACAGGTGAGAACCATTATA+AGG - chr3.4:46230912-46230931 MS.gene027211:intron 35.0%
AAGACGAATATGGATGAGTT+TGG - chr3.4:46227529-46227548 MS.gene027211:intron 35.0%
AAGTTCAAGGACCTAAATTG+TGG + chr3.4:46227765-46227784 None:intergenic 35.0%
ACAATGTTTGGTATAGTCTC+GGG - chr3.4:46229632-46229651 MS.gene027211:CDS 35.0%
ATATGGATGAGTTTGGTATG+GGG - chr3.4:46227536-46227555 MS.gene027211:intron 35.0%
ATCAAACTCTCTAAACCACT+GGG + chr3.4:46231819-46231838 None:intergenic 35.0%
ATCATAGTAACCAGCTGAAA+GGG + chr3.4:46230572-46230591 None:intergenic 35.0%
CCATGTGGATTTATTGAGAA+TGG - chr3.4:46231978-46231997 MS.gene027211:CDS 35.0%
CCATTCTCAATAAATCCACA+TGG + chr3.4:46231981-46232000 None:intergenic 35.0%
CCTTCAGCTGCTTATAAAAT+TGG - chr3.4:46230989-46231008 MS.gene027211:intron 35.0%
CTAAAAGACACGTAAAGAAC+AGG + chr3.4:46230784-46230803 None:intergenic 35.0%
GAATATGGATGAGTTTGGTA+TGG - chr3.4:46227534-46227553 MS.gene027211:intron 35.0%
GACAATGTTTGGTATAGTCT+CGG - chr3.4:46229631-46229650 MS.gene027211:CDS 35.0%
GATAGTAAGCGGTTAAATGT+AGG - chr3.4:46228181-46228200 MS.gene027211:CDS 35.0%
GGGCTCTTTGTTAAATATGA+AGG - chr3.4:46229652-46229671 MS.gene027211:CDS 35.0%
TAAATGTGAGAAGGTTTGAG+TGG - chr3.4:46228790-46228809 MS.gene027211:CDS 35.0%
TACACTAAACTTCGTGTTGA+CGG - chr3.4:46232074-46232093 MS.gene027211:CDS 35.0%
TATTGTCAAATTAGGTGCCA+GGG - chr3.4:46227933-46227952 MS.gene027211:intron 35.0%
TCATCTGTCCATTAACTTAC+AGG - chr3.4:46230059-46230078 MS.gene027211:intron 35.0%
TCTCTTTCTTTGACATTTGC+AGG - chr3.4:46231073-46231092 MS.gene027211:intron 35.0%
TTATGCGTGTTCTATGTAAC+AGG - chr3.4:46230895-46230914 MS.gene027211:intron 35.0%
TTATTGTCAAATTAGGTGCC+AGG - chr3.4:46227932-46227951 MS.gene027211:intron 35.0%
TTTATTGAGAATGGATCGAC+TGG - chr3.4:46231987-46232006 MS.gene027211:CDS 35.0%
! CCAATTTTATAAGCAGCTGA+AGG + chr3.4:46230992-46231011 None:intergenic 35.0%
! CTGGACATTTGAAATTTGAG+AGG + chr3.4:46228754-46228773 None:intergenic 35.0%
! GACTTCTAGTTACTCCATAA+AGG - chr3.4:46231532-46231551 MS.gene027211:intron 35.0%
! GATATCCTACAGTTGCTTTA+TGG - chr3.4:46228931-46228950 MS.gene027211:intron 35.0%
! GGGACTAAATTGATAGTAAG+CGG - chr3.4:46228170-46228189 MS.gene027211:CDS 35.0%
! GTTGTAGTGCATTTCTGTTT+TGG - chr3.4:46228406-46228425 MS.gene027211:intron 35.0%
! TAGGTTTGAAGCCAACATAT+GGG - chr3.4:46229393-46229412 MS.gene027211:intron 35.0%
! TATCCTACAGTTGCTTTATG+GGG - chr3.4:46228933-46228952 MS.gene027211:intron 35.0%
! TTAGAAGTTTGGGATCTACA+AGG - chr3.4:46230868-46230887 MS.gene027211:intron 35.0%
!! TATGCATTGGTATTTTGAGC+TGG - chr3.4:46230491-46230510 MS.gene027211:intron 35.0%
!!! TTTTTGTTTTCCAGTTTGGG+TGG - chr3.4:46228495-46228514 MS.gene027211:intron 35.0%
AAACCAGTCTCTGACTTTGT+AGG - chr3.4:46228051-46228070 MS.gene027211:CDS 40.0%
AACCAGTCTCTGACTTTGTA+GGG - chr3.4:46228052-46228071 MS.gene027211:CDS 40.0%
AACTGATGACTTCATTCGCT+GGG + chr3.4:46231563-46231582 None:intergenic 40.0%
AAGATGATTCAGACAAAGCG+AGG + chr3.4:46230128-46230147 None:intergenic 40.0%
ACCAATTCTCAGTCCTTTCA+AGG + chr3.4:46229835-46229854 None:intergenic 40.0%
AGGCAATGTGTTGTATCGTT+GGG - chr3.4:46229320-46229339 MS.gene027211:CDS 40.0%
ATAACTAGTTATGCACCCAG+TGG - chr3.4:46231801-46231820 MS.gene027211:CDS 40.0%
ATGCAAAAGGAAAGCTACAC+AGG + chr3.4:46231021-46231040 None:intergenic 40.0%
ATTGTTGACGAATGACCTGA+TGG - chr3.4:46229024-46229043 MS.gene027211:CDS 40.0%
CAGTGACACCTGTAAGTTAA+TGG + chr3.4:46230070-46230089 None:intergenic 40.0%
CATCACATTATGCATCCATC+AGG + chr3.4:46229042-46229061 None:intergenic 40.0%
CATCATAGTAACCAGCTGAA+AGG + chr3.4:46230573-46230592 None:intergenic 40.0%
CATGGGTTCCAGCATTTATT+TGG - chr3.4:46228875-46228894 MS.gene027211:intron 40.0%
CCAATATGACAGCAAGTTCA+AGG + chr3.4:46227778-46227797 None:intergenic 40.0%
CCAATTCTCAGTCCTTTCAA+GGG + chr3.4:46229834-46229853 None:intergenic 40.0%
CTAGCTCATCAGCATAAACT+TGG + chr3.4:46230327-46230346 None:intergenic 40.0%
CTATGATGGTATTAGGTCAG+TGG - chr3.4:46230161-46230180 MS.gene027211:intron 40.0%
GATCAAACTCTCTAAACCAC+TGG + chr3.4:46231820-46231839 None:intergenic 40.0%
GATTGGTGCAGCATTTAATG+AGG - chr3.4:46232031-46232050 MS.gene027211:CDS 40.0%
GTGAAGAGAGTTAAGGAGTT+GGG - chr3.4:46227490-46227509 MS.gene027211:intron 40.0%
GTTTGAGTGGTGACATTATG+TGG - chr3.4:46228803-46228822 MS.gene027211:CDS 40.0%
TAACTGATGACTTCATTCGC+TGG + chr3.4:46231564-46231583 None:intergenic 40.0%
TACTACAATATGCAACGACC+CGG + chr3.4:46231474-46231493 None:intergenic 40.0%
TAGGTAAATGTCAACCTAGC+TGG - chr3.4:46231936-46231955 MS.gene027211:CDS 40.0%
TATCATGACCAGCAATTGCA+TGG + chr3.4:46229511-46229530 None:intergenic 40.0%
TCATACCTGCTTACTTGATG+TGG + chr3.4:46229543-46229562 None:intergenic 40.0%
TGAAATTGCAAACACATCCC+TGG + chr3.4:46227953-46227972 None:intergenic 40.0%
TGGTCATTGACGACAATGTT+TGG - chr3.4:46229620-46229639 MS.gene027211:intron 40.0%
TGTCTCGCTATGATGGTATT+AGG - chr3.4:46230154-46230173 MS.gene027211:intron 40.0%
TGTGTTCGGTTGTGTGTATT+TGG + chr3.4:46230221-46230240 None:intergenic 40.0%
TGTTGTTGGGAAGACGAATA+TGG - chr3.4:46227519-46227538 MS.gene027211:intron 40.0%
TGTTTGGCACACCACAATTT+AGG - chr3.4:46227751-46227770 MS.gene027211:intron 40.0%
TTGGAAAGTAAGCCCTTGAA+AGG - chr3.4:46229819-46229838 MS.gene027211:CDS 40.0%
! ACACTAAACTTCGTGTTGAC+GGG - chr3.4:46232075-46232094 MS.gene027211:CDS 40.0%
! GTAGGTTTGAAGCCAACATA+TGG - chr3.4:46229392-46229411 MS.gene027211:intron 40.0%
! TACAAAGTCAGAGACTGGTT+TGG + chr3.4:46228052-46228071 None:intergenic 40.0%
! TGGTGTTCTTGTTGCTGTTA+AGG - chr3.4:46227384-46227403 MS.gene027211:intron 40.0%
!! ATTGAAGATGGTGTTGATGC+TGG - chr3.4:46229870-46229889 MS.gene027211:CDS 40.0%
!! CCTTGAACTTGCTGTCATAT+TGG - chr3.4:46227775-46227794 MS.gene027211:intron 40.0%
!! TGATGCTGCTTCACATTTTG+AGG - chr3.4:46229911-46229930 MS.gene027211:CDS 40.0%
!!! GCTTCACATTTTGAGGCATT+AGG - chr3.4:46229918-46229937 MS.gene027211:intron 40.0%
AAAGCGAGGACATAGTATGC+TGG + chr3.4:46230114-46230133 None:intergenic 45.0%
AACTAGTCCCAGACTTCGTA+TGG + chr3.4:46228345-46228364 None:intergenic 45.0%
AAGAGAGTTAAGGAGTTGGG+TGG - chr3.4:46227493-46227512 MS.gene027211:intron 45.0%
ACAACACCGCAAAATGATGC+CGG + chr3.4:46229374-46229393 None:intergenic 45.0%
ACCATCATAGCGAGACAAGT+TGG + chr3.4:46230151-46230170 None:intergenic 45.0%
AGACACGTAAAGAACAGGAG+TGG + chr3.4:46230779-46230798 None:intergenic 45.0%
AGAGAGTTAAGGAGTTGGGT+GGG - chr3.4:46227494-46227513 MS.gene027211:intron 45.0%
AGATGAACCAAAGCAGCCAA+TGG + chr3.4:46229465-46229484 None:intergenic 45.0%
ATATTACAAACGAGCGCAGC+AGG - chr3.4:46230594-46230613 MS.gene027211:intron 45.0%
ATGCTGCACCAATCATTTGC+AGG + chr3.4:46232025-46232044 None:intergenic 45.0%
ATTAGGATGCTCTGTGAACG+AGG - chr3.4:46229935-46229954 MS.gene027211:intron 45.0%
ATTCTCCTCCATGCAATTGC+TGG - chr3.4:46229500-46229519 MS.gene027211:intron 45.0%
CAACCCGTGGGATGTTAATA+GGG - chr3.4:46229253-46229272 MS.gene027211:CDS 45.0%
CAACGATACAACACATTGCC+TGG + chr3.4:46229321-46229340 None:intergenic 45.0%
CACTGAAGCTTCTGCATTTC+AGG - chr3.4:46227564-46227583 MS.gene027211:intron 45.0%
CAGGCAATGTGTTGTATCGT+TGG - chr3.4:46229319-46229338 MS.gene027211:CDS 45.0%
CATGACTGACATCAGCCAAA+TGG + chr3.4:46228676-46228695 None:intergenic 45.0%
CCCTTGAAAGGACTGAGAAT+TGG - chr3.4:46229831-46229850 MS.gene027211:CDS 45.0%
CGAGGATACTTGAGGGTTAT+CGG - chr3.4:46227446-46227465 MS.gene027211:intron 45.0%
CGTCTCAAGATTTGGACTCA+TGG - chr3.4:46229418-46229437 MS.gene027211:intron 45.0%
CTGAAATGCAGAAGCTTCAG+TGG + chr3.4:46227566-46227585 None:intergenic 45.0%
CTGATGTCAGTCATGTTGAG+CGG - chr3.4:46228681-46228700 MS.gene027211:intron 45.0%
GAACGCTGATAAGACAACCT+AGG + chr3.4:46230833-46230852 None:intergenic 45.0%
GATCCTTTGGCTATGTATGC+TGG - chr3.4:46231109-46231128 MS.gene027211:intron 45.0%
GATGAGCTAGACTCTCTCTA+TGG - chr3.4:46230337-46230356 MS.gene027211:intron 45.0%
GCTTAAATGTCCACCCAAAC+TGG + chr3.4:46228508-46228527 None:intergenic 45.0%
GGTGAAGAGAGTTAAGGAGT+TGG - chr3.4:46227489-46227508 MS.gene027211:intron 45.0%
GTATCGTTGGGAAGTGATAC+TGG - chr3.4:46229332-46229351 MS.gene027211:CDS 45.0%
TACAAAAAGTGGGGTTGTGC+TGG - chr3.4:46229097-46229116 MS.gene027211:intron 45.0%
TACCTCAGAACCTAACCCTT+TGG + chr3.4:46230374-46230393 None:intergenic 45.0%
TCACCAGCATACATAGCCAA+AGG + chr3.4:46231115-46231134 None:intergenic 45.0%
TCCAACTTGTCTCGCTATGA+TGG - chr3.4:46230147-46230166 MS.gene027211:intron 45.0%
TCTGCTGTGTAGTTGAGACA+CGG + chr3.4:46231633-46231652 None:intergenic 45.0%
TGATGCCACATCAAGTAAGC+AGG - chr3.4:46229535-46229554 MS.gene027211:intron 45.0%
TTCGCTGGGATACTCCTTTA+TGG + chr3.4:46231549-46231568 None:intergenic 45.0%
TTCGTATGGCGCTCTCAAAT+AGG + chr3.4:46228331-46228350 None:intergenic 45.0%
TTGGGTTAAGAAGAACCGAG+AGG + chr3.4:46230664-46230683 None:intergenic 45.0%
! AGTTGGGTGGGATTGTTGTT+GGG - chr3.4:46227506-46227525 MS.gene027211:intron 45.0%
! CACTAAACTTCGTGTTGACG+GGG - chr3.4:46232076-46232095 MS.gene027211:CDS 45.0%
! CACTGCCATCCTTTTCACTT+GGG - chr3.4:46230085-46230104 MS.gene027211:intron 45.0%
! CATTAGTGTGGGGTTAGTGT+TGG - chr3.4:46228626-46228645 MS.gene027211:intron 45.0%
! GGGACCTAATTGATAGCAAG+TGG - chr3.4:46228235-46228254 MS.gene027211:CDS 45.0%
! TCACTGCCATCCTTTTCACT+TGG - chr3.4:46230084-46230103 MS.gene027211:intron 45.0%
! TTTGTAGGGCGTTCTCAGAT+AGG - chr3.4:46228066-46228085 MS.gene027211:intron 45.0%
!! AAAGTCAGAGACTGGTTTGG+TGG + chr3.4:46228049-46228068 None:intergenic 45.0%
!! CTGCTGGTTTATGCCTTAGA+TGG - chr3.4:46231397-46231416 MS.gene027211:intron 45.0%
!! GGTGATTGTGGATGATGGAA+GGG + chr3.4:46227116-46227135 None:intergenic 45.0%
!! TACGAAGTCTGGGACTAGTT+TGG - chr3.4:46228345-46228364 MS.gene027211:intron 45.0%
!! TGGTGATTGTGGATGATGGA+AGG + chr3.4:46227117-46227136 None:intergenic 45.0%
!!! GCATCATTTTGCGGTGTTGT+AGG - chr3.4:46229374-46229393 MS.gene027211:CDS 45.0%
AGCCAAAGGGTTAGGTTCTG+AGG - chr3.4:46230369-46230388 MS.gene027211:intron 50.0%
AGTAGCTTGGGTGGTGATTG+TGG + chr3.4:46227128-46227147 None:intergenic 50.0%
ATGGTGAATCCCGAGCCAAA+GGG - chr3.4:46230356-46230375 MS.gene027211:intron 50.0%
ATTTGGACGAAGAGAGCGAG+AGG + chr3.4:46230204-46230223 None:intergenic 50.0%
CAGAACCTAACCCTTTGGCT+CGG + chr3.4:46230369-46230388 None:intergenic 50.0%
CATGACCAGCAATTGCATGG+AGG + chr3.4:46229508-46229527 None:intergenic 50.0%
CCAACCCGTGGGATGTTAAT+AGG - chr3.4:46229252-46229271 MS.gene027211:CDS 50.0%
CCAATCATTTGCAGGCCAAC+AGG + chr3.4:46232017-46232036 None:intergenic 50.0%
CCACATGGTAAAACCAAGGC+AGG + chr3.4:46231966-46231985 None:intergenic 50.0%
CCTATTAACATCCCACGGGT+TGG + chr3.4:46229255-46229274 None:intergenic 50.0%
CTGCCCCATAAAGCAACTGT+AGG + chr3.4:46228939-46228958 None:intergenic 50.0%
GAGTTGGGTGGGATTGTTGT+TGG - chr3.4:46227505-46227524 MS.gene027211:intron 50.0%
GCAACAAGAACACCAGCAAG+AGG + chr3.4:46227379-46227398 None:intergenic 50.0%
GCACCCTATTAACATCCCAC+GGG + chr3.4:46229259-46229278 None:intergenic 50.0%
GCGTCATCACTTGATGCCAT+TGG - chr3.4:46229446-46229465 MS.gene027211:intron 50.0%
GGCAACCCAAGTGAAAAGGA+TGG + chr3.4:46230093-46230112 None:intergenic 50.0%
GGCACCCTATTAACATCCCA+CGG + chr3.4:46229260-46229279 None:intergenic 50.0%
GGCATAAACCAGCAGTACTG+TGG + chr3.4:46231392-46231411 None:intergenic 50.0%
GGTGGGTCTGATATACCTCT+CGG - chr3.4:46230646-46230665 MS.gene027211:intron 50.0%
GTTCATCTGTCGCTGATGCT+GGG - chr3.4:46229477-46229496 MS.gene027211:intron 50.0%
TATGGGCGCGTCTCAAGATT+TGG - chr3.4:46229410-46229429 MS.gene027211:intron 50.0%
TATGGTGAATCCCGAGCCAA+AGG - chr3.4:46230355-46230374 MS.gene027211:intron 50.0%
TCATTTGCAGGCCAACAGGA+AGG + chr3.4:46232013-46232032 None:intergenic 50.0%
TCGTTGGGAAGTGATACTGG+TGG - chr3.4:46229335-46229354 MS.gene027211:CDS 50.0%
TGCTGGCAACCCAAGTGAAA+AGG + chr3.4:46230097-46230116 None:intergenic 50.0%
TGGGTGGTGATTGTGGATGA+TGG + chr3.4:46227121-46227140 None:intergenic 50.0%
TTTGGACGAAGAGAGCGAGA+GGG + chr3.4:46230203-46230222 None:intergenic 50.0%
! AGAACCTAACCCTTTGGCTC+GGG + chr3.4:46230368-46230387 None:intergenic 50.0%
! CCTGTTGGCCTGCAAATGAT+TGG - chr3.4:46232014-46232033 MS.gene027211:CDS 50.0%
! CTTGATGCCATTGGCTGCTT+TGG - chr3.4:46229455-46229474 MS.gene027211:intron 50.0%
! GAATAGCTTCAAGGAAGCGC+TGG - chr3.4:46230934-46230953 MS.gene027211:intron 50.0%
! GATGTTAATAGGGTGCCAGG+AGG - chr3.4:46229263-46229282 MS.gene027211:CDS 50.0%
! GTGATACTGGTGGAAGTGTG+AGG - chr3.4:46229345-46229364 MS.gene027211:CDS 50.0%
! GTTTTTCTCCGTCTGTGGGT+GGG - chr3.4:46229119-46229138 MS.gene027211:intron 50.0%
! TGGGATGTTAATAGGGTGCC+AGG - chr3.4:46229260-46229279 MS.gene027211:CDS 50.0%
!! GAAGTCTGGGACTAGTTTGG+TGG - chr3.4:46228348-46228367 MS.gene027211:intron 50.0%
!!! CCTGCCTTGGTTTTACCATG+TGG - chr3.4:46231963-46231982 MS.gene027211:CDS 50.0%
!!! GCTGGTTTTTCTCCGTCTGT+GGG - chr3.4:46229115-46229134 MS.gene027211:intron 50.0%
!!! TGCTGGTTTTTCTCCGTCTG+TGG - chr3.4:46229114-46229133 MS.gene027211:intron 50.0%
AAGCAGCTGAAGGAGCTGCA+GGG + chr3.4:46230982-46231001 None:intergenic 55.0%
AAGCGTGAGAGAGTGGAACG+TGG + chr3.4:46227091-46227110 None:intergenic 55.0%
AATAGGTGACTGCCAACCCG+TGG - chr3.4:46229240-46229259 MS.gene027211:CDS 55.0%
AGAGAGTGGAACGTGGGGTT+TGG + chr3.4:46227084-46227103 None:intergenic 55.0%
AGCGTGAGAGAGTGGAACGT+GGG + chr3.4:46227090-46227109 None:intergenic 55.0%
AGGAGGATCATCCGGAGGAT+CGG - chr3.4:46229280-46229299 MS.gene027211:CDS 55.0%
AGGGTGAGGATTTGAGAGGG+GGG + chr3.4:46227178-46227197 None:intergenic 55.0%
ATAGGTGACTGCCAACCCGT+GGG - chr3.4:46229241-46229260 MS.gene027211:CDS 55.0%
CAGTACTGTGGCCTGCTCAA+TGG + chr3.4:46231380-46231399 None:intergenic 55.0%
CCTCGACAGTAGAATCGCTG+CGG - chr3.4:46227339-46227358 MS.gene027211:intron 55.0%
CGCCCTACAAAGTCAGAGAC+TGG + chr3.4:46228057-46228076 None:intergenic 55.0%
CGGAGGGTGAGGATTTGAGA+GGG + chr3.4:46227181-46227200 None:intergenic 55.0%
CTCGACAGTAGAATCGCTGC+GGG - chr3.4:46227340-46227359 MS.gene027211:intron 55.0%
CTGAGCGAGGAGGGATTGTT+CGG + chr3.4:46227311-46227330 None:intergenic 55.0%
CTTGAGACGCGCCCATATGT+TGG + chr3.4:46229407-46229426 None:intergenic 55.0%
GAATCCCGAGCCAAAGGGTT+AGG - chr3.4:46230361-46230380 MS.gene027211:intron 55.0%
GACGGCGGTGAAGAGAGTTA+AGG - chr3.4:46227483-46227502 MS.gene027211:intron 55.0%
GAGGGTGAGGATTTGAGAGG+GGG + chr3.4:46227179-46227198 None:intergenic 55.0%
GAGGTGGGATTGGATGAGGT+CGG + chr3.4:46227236-46227255 None:intergenic 55.0%
GCTTTATGGGGCAGCAGCTA+TGG - chr3.4:46228945-46228964 MS.gene027211:intron 55.0%
GGAGGGTGAGGATTTGAGAG+GGG + chr3.4:46227180-46227199 None:intergenic 55.0%
GGGACATATGCCCTTTCAGC+TGG - chr3.4:46230559-46230578 MS.gene027211:intron 55.0%
GGGGTGTGTGAGAGTAGCTT+GGG + chr3.4:46227140-46227159 None:intergenic 55.0%
GGTGGGTCGAGGATACTTGA+GGG - chr3.4:46227439-46227458 MS.gene027211:intron 55.0%
GGTTCATCTGTCGCTGATGC+TGG - chr3.4:46229476-46229495 MS.gene027211:intron 55.0%
GTGTGTGAGAGTAGCTTGGG+TGG + chr3.4:46227137-46227156 None:intergenic 55.0%
TAAGCAGCTGAAGGAGCTGC+AGG + chr3.4:46230983-46231002 None:intergenic 55.0%
TCGACAGTAGAATCGCTGCG+GGG - chr3.4:46227341-46227360 MS.gene027211:intron 55.0%
TTAGCCAACCCACCCACAGA+CGG + chr3.4:46229130-46229149 None:intergenic 55.0%
TTCACCGCCGTCGCATCAAA+CGG + chr3.4:46227475-46227494 None:intergenic 55.0%
TTGGACGAAGAGAGCGAGAG+GGG + chr3.4:46230202-46230221 None:intergenic 55.0%
! AAGGGAGAAGCGTGAGAGAG+TGG + chr3.4:46227098-46227117 None:intergenic 55.0%
! AGGCAGCCGGCATCATTTTG+CGG - chr3.4:46229365-46229384 MS.gene027211:CDS 55.0%
! CTGATATGCCGTCGACTGGT+GGG - chr3.4:46227422-46227441 MS.gene027211:intron 55.0%
! GAGGAAGTTGGTCCTCTTGC+TGG - chr3.4:46227364-46227383 MS.gene027211:intron 55.0%
! GGTTTTTCTCCGTCTGTGGG+TGG - chr3.4:46229118-46229137 MS.gene027211:intron 55.0%
! TGGTGGGTCGAGGATACTTG+AGG - chr3.4:46227438-46227457 MS.gene027211:intron 55.0%
! TGTTGGTGAGAAGGGAGTGG+CGG + chr3.4:46227201-46227220 None:intergenic 55.0%
!! AGAGCTCTGAGCCATTGAGC+AGG - chr3.4:46231366-46231385 MS.gene027211:intron 55.0%
!! GAGAGCGCCATACGAAGTCT+GGG - chr3.4:46228335-46228354 MS.gene027211:intron 55.0%
!! GGAGAGGGTGTTGGTGAGAA+GGG + chr3.4:46227209-46227228 None:intergenic 55.0%
!! GTGTGGGGTTAGTGTTGGTG+AGG - chr3.4:46228631-46228650 MS.gene027211:intron 55.0%
!! TGAGAGCGCCATACGAAGTC+TGG - chr3.4:46228334-46228353 MS.gene027211:intron 55.0%
AACTGCAGCTGCCGATCCTC+CGG + chr3.4:46229294-46229313 None:intergenic 60.0%
ACGGCTGATATGCCGTCGAC+TGG - chr3.4:46227418-46227437 MS.gene027211:intron 60.0%
AGCAGCTGAAGGAGCTGCAG+GGG + chr3.4:46230981-46231000 None:intergenic 60.0%
AGCGAGGAGGGATTGTTCGG+AGG + chr3.4:46227308-46227327 None:intergenic 60.0%
AGGGGAGGTGGAGGAAGGAA+CGG + chr3.4:46227288-46227307 None:intergenic 60.0%
ATCCTCGACCCACCAGTCGA+CGG + chr3.4:46227433-46227452 None:intergenic 60.0%
ATTGTTCGGAGGGGAGGTGG+AGG + chr3.4:46227297-46227316 None:intergenic 60.0%
CCAAGGCAGGTAGTCCAGCT+AGG + chr3.4:46231953-46231972 None:intergenic 60.0%
CCGCAGCGATTCTACTGTCG+AGG + chr3.4:46227342-46227361 None:intergenic 60.0%
CCTAGCTGGACTACCTGCCT+TGG - chr3.4:46231950-46231969 MS.gene027211:CDS 60.0%
CGAACAATCCCTCCTCGCTC+AGG - chr3.4:46227309-46227328 MS.gene027211:intron 60.0%
CGACAGTAGAATCGCTGCGG+GGG - chr3.4:46227342-46227361 MS.gene027211:intron 60.0%
CGAGGAGGGATTGTTCGGAG+GGG + chr3.4:46227306-46227325 None:intergenic 60.0%
GAAGGAACGGAGGTGGGGTT+CGG + chr3.4:46227275-46227294 None:intergenic 60.0%
GAGGATTTGAGAGGGGGGTG+CGG + chr3.4:46227173-46227192 None:intergenic 60.0%
GATCCTCCGGATGATCCTCC+TGG + chr3.4:46229281-46229300 None:intergenic 60.0%
GCGAGGAGGGATTGTTCGGA+GGG + chr3.4:46227307-46227326 None:intergenic 60.0%
GCGGAGGGTGAGGATTTGAG+AGG + chr3.4:46227182-46227201 None:intergenic 60.0%
GCGTGAGAGAGTGGAACGTG+GGG + chr3.4:46227089-46227108 None:intergenic 60.0%
GGATTGGATGAGGTCGGTGG+CGG + chr3.4:46227230-46227249 None:intergenic 60.0%
GGGTGAGGTGGGATTGGATG+AGG + chr3.4:46227240-46227259 None:intergenic 60.0%
GTCATGTGCCTGAGCGAGGA+GGG + chr3.4:46227320-46227339 None:intergenic 60.0%
GTGGAGGAAGGAACGGAGGT+GGG + chr3.4:46227281-46227300 None:intergenic 60.0%
GTGGGATTGGATGAGGTCGG+TGG + chr3.4:46227233-46227252 None:intergenic 60.0%
TGAGCAGGCCACAGTACTGC+TGG - chr3.4:46231381-46231400 MS.gene027211:intron 60.0%
TGGAGGAAGGAACGGAGGTG+GGG + chr3.4:46227280-46227299 None:intergenic 60.0%
TTCTCCGTCTGTGGGTGGGT+TGG - chr3.4:46229123-46229142 MS.gene027211:intron 60.0%
! AGGGTGCCAGGAGGATCATC+CGG - chr3.4:46229272-46229291 MS.gene027211:CDS 60.0%
! GAGAGCGAGAGGGGTACATG+AGG + chr3.4:46230193-46230212 None:intergenic 60.0%
! GCTGATATGCCGTCGACTGG+TGG - chr3.4:46227421-46227440 MS.gene027211:intron 60.0%
! GGAACGTGGGGTTTGGAGTG+TGG + chr3.4:46227077-46227096 None:intergenic 60.0%
! GGGGGTGTGTGAGAGTAGCT+TGG + chr3.4:46227141-46227160 None:intergenic 60.0%
! TGGTGGAAGTGTGAGGCAGC+CGG - chr3.4:46229352-46229371 MS.gene027211:CDS 60.0%
!! CGGAGAGGGTGTTGGTGAGA+AGG + chr3.4:46227210-46227229 None:intergenic 60.0%
!! GGATCGACTGGCCTTCCTGT+TGG - chr3.4:46231999-46232018 MS.gene027211:CDS 60.0%
!! GGGTGTTGGTGAGAAGGGAG+TGG + chr3.4:46227204-46227223 None:intergenic 60.0%
ACCGCCGTCGCATCAAACGG+CGG + chr3.4:46227472-46227491 None:intergenic 65.0%
ATCGCTGCGGGGGAGGAAGT+TGG - chr3.4:46227352-46227371 MS.gene027211:intron 65.0%
CAGTAGAATCGCTGCGGGGG+AGG - chr3.4:46227345-46227364 MS.gene027211:intron 65.0%
CGAGGTCATGTGCCTGAGCG+AGG + chr3.4:46227324-46227343 None:intergenic 65.0%
CGGCAGCTGCAGTTTCTGCC+AGG - chr3.4:46229300-46229319 MS.gene027211:CDS 65.0%
GGAGGGATTGTTCGGAGGGG+AGG + chr3.4:46227303-46227322 None:intergenic 65.0%
GGAGGTGGAGGAAGGAACGG+AGG + chr3.4:46227285-46227304 None:intergenic 65.0%
GGGATTGTTCGGAGGGGAGG+TGG + chr3.4:46227300-46227319 None:intergenic 65.0%
GGTCATGTGCCTGAGCGAGG+AGG + chr3.4:46227321-46227340 None:intergenic 65.0%
GGTGGAGGAAGGAACGGAGG+TGG + chr3.4:46227282-46227301 None:intergenic 65.0%
GTGCCAGGAGGATCATCCGG+AGG - chr3.4:46229275-46229294 MS.gene027211:CDS 65.0%
TCGGCCGCCGTTTGATGCGA+CGG - chr3.4:46227465-46227484 MS.gene027211:intron 65.0%
TGGTGAGAAGGGAGTGGCGG+AGG + chr3.4:46227198-46227217 None:intergenic 65.0%
TTCGGAGGGGAGGTGGAGGA+AGG + chr3.4:46227293-46227312 None:intergenic 65.0%
! AGGGGGGTGCGGTTGTAGGT+TGG + chr3.4:46227162-46227181 None:intergenic 65.0%
! GGGGGGTGCGGTTGTAGGTT+GGG + chr3.4:46227161-46227180 None:intergenic 65.0%
! GGGGGTGCGGTTGTAGGTTG+GGG + chr3.4:46227160-46227179 None:intergenic 65.0%
! GGGGTGCGGTTGTAGGTTGG+GGG + chr3.4:46227159-46227178 None:intergenic 65.0%
! GGTGAGAAGGGAGTGGCGGA+GGG + chr3.4:46227197-46227216 None:intergenic 65.0%
! TGAGAGGGGGGTGCGGTTGT+AGG + chr3.4:46227166-46227185 None:intergenic 65.0%
!! GATGAGGTCGGTGGCGGAGA+GGG + chr3.4:46227224-46227243 None:intergenic 65.0%
!! GGAGGTGGGGTTCGGTGAGA+CGG + chr3.4:46227267-46227286 None:intergenic 65.0%
GAGACGGAGGCGGGTGAGGT+GGG + chr3.4:46227251-46227270 None:intergenic 70.0%
GCCGCCGTTTGATGCGACGG+CGG - chr3.4:46227468-46227487 MS.gene027211:intron 70.0%
GGAGGCGGGTGAGGTGGGAT+TGG + chr3.4:46227246-46227265 None:intergenic 70.0%
TGAGACGGAGGCGGGTGAGG+TGG + chr3.4:46227252-46227271 None:intergenic 70.0%
! GAAGGGAGTGGCGGAGGGTG+AGG + chr3.4:46227192-46227211 None:intergenic 70.0%
! TGCCGTCGACTGGTGGGTCG+AGG - chr3.4:46227428-46227447 MS.gene027211:intron 70.0%
!! GGATGAGGTCGGTGGCGGAG+AGG + chr3.4:46227225-46227244 None:intergenic 70.0%
!! GGGGTTCGGTGAGACGGAGG+CGG + chr3.4:46227261-46227280 None:intergenic 70.0%
!! GGGTTCGGTGAGACGGAGGC+GGG + chr3.4:46227260-46227279 None:intergenic 70.0%
!! GGTGGGGTTCGGTGAGACGG+AGG + chr3.4:46227264-46227283 None:intergenic 70.0%
!! GTCGGTGGCGGAGAGGGTGT+TGG + chr3.4:46227218-46227237 None:intergenic 70.0%
CGGTGAGACGGAGGCGGGTG+AGG + chr3.4:46227255-46227274 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 46227061 46232118 46227061 ID=MS.gene027211
chr3.4 mRNA 46227061 46232118 46227061 ID=MS.gene027211.t1;Parent=MS.gene027211
chr3.4 exon 46231594 46232118 46231594 ID=MS.gene027211.t1.exon1;Parent=MS.gene027211.t1
chr3.4 CDS 46231594 46232118 46231594 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
chr3.4 exon 46229623 46229934 46229623 ID=MS.gene027211.t1.exon2;Parent=MS.gene027211.t1
chr3.4 CDS 46229623 46229934 46229623 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
chr3.4 exon 46229223 46229402 46229223 ID=MS.gene027211.t1.exon3;Parent=MS.gene027211.t1
chr3.4 CDS 46229223 46229402 46229223 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
chr3.4 exon 46229004 46229098 46229004 ID=MS.gene027211.t1.exon4;Parent=MS.gene027211.t1
chr3.4 CDS 46229004 46229098 46229004 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
chr3.4 exon 46228789 46228864 46228789 ID=MS.gene027211.t1.exon5;Parent=MS.gene027211.t1
chr3.4 CDS 46228789 46228864 46228789 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
chr3.4 exon 46228564 46228641 46228564 ID=MS.gene027211.t1.exon6;Parent=MS.gene027211.t1
chr3.4 CDS 46228564 46228641 46228564 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
chr3.4 exon 46228169 46228262 46228169 ID=MS.gene027211.t1.exon7;Parent=MS.gene027211.t1
chr3.4 CDS 46228169 46228262 46228169 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
chr3.4 exon 46228035 46228084 46228035 ID=MS.gene027211.t1.exon8;Parent=MS.gene027211.t1
chr3.4 CDS 46228035 46228084 46228035 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
chr3.4 exon 46227061 46227240 46227061 ID=MS.gene027211.t1.exon9;Parent=MS.gene027211.t1
chr3.4 CDS 46227061 46227240 46227061 ID=cds.MS.gene027211.t1;Parent=MS.gene027211.t1
Gene Sequence

>MS.gene027211

ATGAAAATGCTATCCACACTCCAAACCCCACGTTCCACTCTCTCACGCTTCTCCCTTCCATCATCCACAATCACCACCCAAGCTACTCTCACACACCCCCAACCTACAACCGCACCCCCCTCTCAAATCCTCACCCTCCGCCACTCCCTTCTCACCAACACCCTCTCCGCCACCGACCTCATCCAATCCCACCTCACCCGCCTCCGTCTCACCGAACCCCACCTCCGTTCCTTCCTCCACCTCCCCTCCGAACAATCCCTCCTCGCTCAGGCACATGACCTCGACAGTAGAATCGCTGCGGGGGAGGAAGTTGGTCCTCTTGCTGGTGTTCTTGTTGCTGTTAAGGATAATATATGTACGGCTGATATGCCGTCGACTGGTGGGTCGAGGATACTTGAGGGTTATCGGCCGCCGTTTGATGCGACGGCGGTGAAGAGAGTTAAGGAGTTGGGTGGGATTGTTGTTGGGAAGACGAATATGGATGAGTTTGGTATGGGGAGTACCACTGAAGCTTCTGCATTTCAGGTTCTTACCCTCTCTTTATATATATTTTCAATTTCAAGTTTGTTTTTTTTATGTTTATTCATATACCTTATTTGAAACTTTGAACCATAATTTAAATTTTAAAGTGAATATTAATCTCAGGTTCTCTGAGTGTGTTAATGTTAATCTGAAGTTAGTTTTTTTGTTTGTTTGGCACACCACAATTTAGGTCCTTGAACTTGCTGTCATATTGGTCTCTGAACGTATTGATATTGCAAACACATCCACAAGTGCATTTTTTATTAGTCATTTTAGTCCTCAAATCTGTTTTTAGGTTGTTAATTTAATCTTTGAATGTGTTTTTCCTTGGTTAATTTAGTCCTTAAAATTATTGTCAAATTAGGTGCCAGGGATGTGTTTGCAATTTCAATAACTTTAGGGACTATAGCTACATCGTCTCATACATTCCTAGTTAATTTTATTTCAATTCATTTTAAGTAAACCACCAAACCAGTCTCTGACTTTGTAGGGCGTTCTCAGATAGGTCTCTGAGATTATGAGTGTTTGAAAAAAGGTTCGTGACTCTGTTAAATTTTACTCTCATATTATATCTTCTGAGTATGTTAGGGACTAAATTGATAGTAAGCGGTTAAATGTAGGGAATAAATTGATGGTAAGTTGTTAAAATATAGGGACCTAATTGATAGCAAGTGGTTAAATAAAGGGATCAATTTGAAAGTTTAATAGAGTCGGTGACTTTTTCCAATATTTATAATGTCAGGGACCTATTTGAGAGCGCCATACGAAGTCTGGGACTAGTTTGGTGGTTTATTAAATCCATTTCATATTCTTTTTTTGCTGTGTTGTAGTGCATTTCTGTTTTGGTTTTTTTTTTTTATCCGGTAGTTGTTTGTTTGTTTGTTTGTTTTGTTGATTTTGAAGATCAGTGTGTTTTTGTTTTCCAGTTTGGGTGGACATTTAAGCTGAATTAAAATTTAGTTTGTATGCTACCCTTGTTTTTTGAACTTTTAGATATATATTTTATAATTGTTGATGATTTTAATATGAGAGATTCTTAGATACATTAGTGTGGGGTTAGTGTTGGTGAGGAATCATGATGTTTGATGATCCATTTGGCTGATGTCAGTCATGTTGAGCGGTGTGATAAAAGAATAGTGTCGTATGCTAGGTGCATCTAAGAATGTCTCCTCTCAAATTTCAAATGTCCAGTTTGTAATGTTAGTAGTAAATGTGAGAAGGTTTGAGTGGTGACATTATGTGGTTACTTGATTCAGATATCTTGTGTTTAACAATTGAATTAAATTTGTGAGCATGGGTTCCAGCATTTATTTGGAGAGAAAATGAGAAGAATGAAAATTGCAAATCGGATATCCTACAGTTGCTTTATGGGGCAGCAGCTATGGAGACCATTATATTTAAGACGTAGAGAGAGATTGTAGAAGATCTGAGTCAGCTGAAAATTGTTGACGAATGACCTGATGGATGCATAATGTGATGCATTGCTAAATTTGTATTTTTGTCATTACAAAACATACAAAAAGTGGGGTTGTGCTGGTTTTTCTCCGTCTGTGGGTGGGTTGGCTAAGCTTTGATAGAGTTCTGTTTGTAGCTTTATTACTTGTATCGCCCATTTATAACTGAGATATGTTTACTCAGGTGATGCATATGTTAATTCAATAGGTGACTGCCAACCCGTGGGATGTTAATAGGGTGCCAGGAGGATCATCCGGAGGATCGGCAGCTGCAGTTTCTGCCAGGCAATGTGTTGTATCGTTGGGAAGTGATACTGGTGGAAGTGTGAGGCAGCCGGCATCATTTTGCGGTGTTGTAGGTTTGAAGCCAACATATGGGCGCGTCTCAAGATTTGGACTCATGGCGTATGCGTCATCACTTGATGCCATTGGCTGCTTTGGTTCATCTGTCGCTGATGCTGGGATTCTCCTCCATGCAATTGCTGGTCATGATAGATTTGATGCCACATCAAGTAAGCAGGTATGAGTTTTTCACCATGTTTGGTAAAAATGTTGTTAGCTTTCTTTTTTTCATTATTAGCAATGGTCATTGACGACAATGTTTGGTATAGTCTCGGGCTCTTTGTTAAATATGAAGGGTAATTGCTTAAGTTGTTCTTGTGTTCATTTGTTTTGTTACCTTGTTATTAAGCCAATTAATTACCTTTTAACAATGAATAGCTAACAATGTAATTTATCAGGAGGTGCCCAATTTTCTATCTCATTTTGACTATGCAAGTTCTTTGGAAAGTAAGCCCTTGAAAGGACTGAGAATTGGTTTGATTCGTGAAACTATTGAAGATGGTGTTGATGCTGGAGTAGTTTCTGCAATTCGTGATGCTGCTTCACATTTTGAGGCATTAGGATGCTCTGTGAACGAGGTCCTCCACTTCATTTTTCTCTATAACTCTGATCTGAATGATAATTTTTTAAGTTGCTTTACAAGCTTATGTTATTAGAATTCATTTGTTAGTTAACCCTTTTCATCTGTCCATTAACTTACAGGTGTCACTGCCATCCTTTTCACTTGGGTTGCCAGCATACTATGTCCTCGCTTTGTCTGAATCATCTTCCAACTTGTCTCGCTATGATGGTATTAGGTCAGTGGCTGACTCCTCATGTACCCCTCTCGCTCTCTTCGTCCAAATACACACAACCGAACACAATGTTTTATTTTGTGTTGTTTATTTTCATTGATAATCATTTTGTTTGGCTTGGGTCCACCTTCTCTATATCTAGATATGGAAACCAAGTTTATGCTGATGAGCTAGACTCTCTCTATGGTGAATCCCGAGCCAAAGGGTTAGGTTCTGAGGTACACACCTTTCAATCCTTCTTAATTTCAAATTTGGCTGCAAGATTTTTGATAGCATTATGTGTAAATATACCTGTATAAAAGAATTGATCCAATTTTATATGCATTGGTATTTTGAGCTGGCTTTCTATTTTTAATACATTTCAGGTGAAAATGAGAATTTTGATGGGGACATATGCCCTTTCAGCTGGTTACTATGATGCATATTACAAACGAGCGCAGCAGGTACTGCTAACTTTATTTTATGTTTTTCTTGGTGGGTCTGATATACCTCTCGGTTCTTCTTAACCCAATGATAATGAATTCAGTCACAGGACTCAGATTAATATATGTTGCTTAAAGAAATTTATAATGTTTCACGATTTCATTCATACACGATATACGTCCACTCCTGTTCTTTACGTGTCTTTTAGAATATGATTAAACTCTTGCTTCATTTCCTAGGTTGTCTTATCAGCGTTCTGAATTTCATTTATTTTAGAAGTTTGGGATCTACAAGGCCTTTTATGCGTGTTCTATGTAACAGGTGAGAACCATTATAAGGAATAGCTTCAAGGAAGCGCTGGACCAATATGATATCTTGATTTCCCCTGCAGCTCCTTCAGCTGCTTATAAAATTGGTTAGCACCTGTGTAGCTTTCCTTTTGCATTATTGCATGTTAGTGCCTGTAATTGTAATCGTTCTCTTTCTTTGACATTTGCAGGTGAAAAGAAAAATGATCCTTTGGCTATGTATGCTGGTGACATCATGACTGTAAGTATTTCATTCTTCTTATTGGCTAGATTTCTGTGTCATACTTCTGAATTCCGATCTCATTATATGTTGTTAATGTTAACTAGACAAATAATGTTAATCATATGTTAATGTTAACTAGACAAATAGTGTTAGTTTGAGGTTTGGAGTTGTACTATTGAACTTCAACTCCATTGAAATTAAACTTGATTCATACACGAGTACGAGTTACTAAAGTTTATAGAGCTCTGAGCCATTGAGCAGGCCACAGTACTGCTGGTTTATGCCTTAGATGGTATATATTCAATCTAAACAATCCAAGAAATATCTTAATTAATCAATAACTGCCGGGTCGTTGCATATTGTAGTACCTTAACATGTGTCAAGTATATATTATTGTGAGTTCTAGACTTCTAGTTACTCCATAAAGGAGTATCCCAGCGAATGAAGTCATCAGTTAGCATAAGCTGTGTTGAATTAGAGAAAATAGAGGCATGATTTTGAAACCGTGTCTCAACTACACAGCAGAGTCAATTTTATATAGGCTAAAGACAATAAATACAACATAAATATTGGAGATATTTTTCTTATTTACTTTATGTGCTATGATACAATATGCCTAAACAATAATCCTATACAATAAATATAGAGACGTGAATAATTTTTCAACAAGTTGCATAACTAGTTATGCACCCAGTGGTTTAGAGAGTTTGATCTTTATGCATTATCTGTAATTTTATTTCTAGCTACTCAGTTTACATGAAATGCCGAGCATAATGTTTGCTTTTCTTTATTGGTGGTTTTTCTTTTTATAGGTAAATGTCAACCTAGCTGGACTACCTGCCTTGGTTTTACCATGTGGATTTATTGAGAATGGATCGACTGGCCTTCCTGTTGGCCTGCAAATGATTGGTGCAGCATTTAATGAGGTATTGAGTTTTCTTATGAACTACACTAAACTTCGTGTTGACGGGGCTTCTCTATGCATCTTCTAG
Protein sequence

>MS.gene027211.t1

MKMLSTLQTPRSTLSRFSLPSSTITTQATLTHPQPTTAPPSQILTLRHSLLTNTLSATDLIQSHLTRLRLTEPHLRSFLHLPSEQSLLAQAHDLDSRIAAGEEVGPLAGVLVAVKDNICTADMPSTGGSRILEGYRPPFDATAVKRVKELGGIVVGKTNMDEFGMGSTTEASAFQVTANPWDVNRVPGGSSGGSAAAVSARQCVVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDAIGCFGSSVADAGILLHAIAGHDRFDATSSKQEVPNFLSHFDYASSLESKPLKGLRIGLIRETIEDGVDAGVVSAIRDAASHFEALGCSVNEVSLPSFSLGLPAYYVLALSESSSNLSRYDGIRYGNQVYADELDSLYGESRAKGLGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIRNSFKEALDQYDILISPAAPSAAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFIENGSTGLPVGLQMIGAAFNEVLSFLMNYTKLRVDGASLCIF