Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027297.t1 | XP_024627233.1 | 91.8 | 514 | 41 | 1 | 1 | 513 | 1 | 514 | 3.60E-215 | 757.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027297.t1 | Q9FME2 | 41.2 | 388 | 195 | 6 | 1 | 377 | 1 | 366 | 3.5e-62 | 240.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027297.t1 | A0A396H244 | 91.8 | 514 | 41 | 1 | 1 | 513 | 1 | 514 | 2.6e-215 | 757.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027297 | MS.gene063501 | PPI |
| MS.gene027297 | MS.gene044455 | PPI |
| MS.gene044456 | MS.gene027297 | PPI |
| MS.gene027297 | MS.gene033053 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027297.t1 | MTR_7g057520 | 94.358 | 514 | 26 | 2 | 1 | 513 | 1 | 512 | 0.0 | 954 |
| MS.gene027297.t1 | MTR_7g055610 | 94.358 | 514 | 26 | 2 | 1 | 513 | 8 | 519 | 0.0 | 952 |
| MS.gene027297.t1 | MTR_4g109640 | 41.750 | 400 | 196 | 11 | 11 | 393 | 13 | 392 | 2.80e-81 | 261 |
| MS.gene027297.t1 | MTR_7g013840 | 40.852 | 399 | 190 | 9 | 11 | 384 | 13 | 390 | 1.46e-78 | 254 |
| MS.gene027297.t1 | MTR_7g013840 | 40.750 | 400 | 190 | 9 | 11 | 384 | 13 | 391 | 1.86e-78 | 254 |
| MS.gene027297.t1 | MTR_4g083150 | 39.356 | 404 | 206 | 9 | 1 | 380 | 1 | 389 | 3.27e-77 | 250 |
| MS.gene027297.t1 | MTR_4g109640 | 41.379 | 377 | 184 | 11 | 11 | 370 | 13 | 369 | 1.94e-74 | 240 |
| MS.gene027297.t1 | MTR_4g109640 | 41.622 | 370 | 179 | 11 | 11 | 363 | 13 | 362 | 7.02e-73 | 236 |
| MS.gene027297.t1 | MTR_7g098440 | 33.758 | 471 | 257 | 19 | 1 | 437 | 1 | 450 | 1.26e-48 | 174 |
| MS.gene027297.t1 | MTR_1g045800 | 32.123 | 358 | 210 | 11 | 8 | 344 | 7 | 352 | 7.87e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027297.t1 | AT3G25150 | 48.926 | 419 | 173 | 11 | 7 | 402 | 8 | 408 | 2.88e-115 | 349 |
| MS.gene027297.t1 | AT3G25150 | 48.926 | 419 | 173 | 11 | 7 | 402 | 107 | 507 | 2.81e-114 | 350 |
| MS.gene027297.t1 | AT5G60980 | 41.013 | 395 | 193 | 6 | 1 | 381 | 1 | 369 | 7.39e-75 | 244 |
| MS.gene027297.t1 | AT5G60980 | 41.013 | 395 | 193 | 6 | 1 | 381 | 1 | 369 | 7.39e-75 | 244 |
| MS.gene027297.t1 | AT5G60980 | 40.909 | 396 | 193 | 6 | 1 | 381 | 1 | 370 | 1.10e-74 | 243 |
| MS.gene027297.t1 | AT5G60980 | 40.909 | 396 | 193 | 6 | 1 | 381 | 1 | 370 | 1.10e-74 | 243 |
| MS.gene027297.t1 | AT5G48650 | 38.785 | 428 | 219 | 11 | 12 | 411 | 13 | 425 | 4.42e-72 | 236 |
| MS.gene027297.t1 | AT1G13730 | 33.178 | 428 | 221 | 13 | 1 | 412 | 1 | 379 | 8.15e-51 | 179 |
| MS.gene027297.t1 | AT1G13730 | 33.178 | 428 | 221 | 13 | 1 | 412 | 1 | 379 | 8.15e-51 | 179 |
| MS.gene027297.t1 | AT2G03640 | 32.114 | 492 | 251 | 18 | 3 | 485 | 2 | 419 | 1.21e-49 | 176 |
| MS.gene027297.t1 | AT2G03640 | 31.707 | 492 | 252 | 17 | 3 | 485 | 2 | 418 | 2.20e-48 | 172 |
| MS.gene027297.t1 | AT2G03640 | 31.707 | 492 | 252 | 17 | 3 | 485 | 2 | 418 | 2.20e-48 | 172 |
| MS.gene027297.t1 | AT2G03640 | 31.707 | 492 | 252 | 17 | 3 | 485 | 2 | 418 | 2.20e-48 | 172 |
| MS.gene027297.t1 | AT1G69250 | 34.103 | 390 | 216 | 14 | 1 | 379 | 1 | 360 | 8.00e-47 | 169 |
| MS.gene027297.t1 | AT2G03640 | 30.814 | 516 | 256 | 19 | 3 | 485 | 2 | 449 | 2.14e-45 | 165 |
| MS.gene027297.t1 | AT1G69250 | 32.888 | 374 | 213 | 13 | 1 | 370 | 1 | 340 | 6.85e-39 | 146 |
| MS.gene027297.t1 | AT5G43960 | 31.500 | 400 | 223 | 11 | 15 | 380 | 11 | 393 | 1.96e-37 | 143 |
| MS.gene027297.t1 | AT3G07250 | 31.034 | 406 | 225 | 14 | 15 | 406 | 10 | 374 | 6.03e-35 | 139 |
| MS.gene027297.t1 | AT3G07250 | 34.426 | 122 | 68 | 4 | 301 | 417 | 463 | 577 | 3.79e-11 | 66.2 |
| MS.gene027297.t1 | AT5G43960 | 32.143 | 308 | 162 | 8 | 106 | 380 | 41 | 334 | 4.18e-29 | 119 |
| MS.gene027297.t1 | AT3G55540 | 33.600 | 125 | 77 | 4 | 15 | 133 | 32 | 156 | 5.20e-13 | 70.5 |
| MS.gene027297.t1 | AT3G24463 | 36.607 | 112 | 65 | 5 | 4 | 111 | 2 | 111 | 1.09e-11 | 62.8 |
Find 146 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAGACCTTCAGTTTC+TGG | 0.114491 | 7.1:+47822162 | None:intergenic |
| ATGGAAGGCCACTCAGTTTC+AGG | 0.164891 | 7.1:-47820300 | MS.gene027297:CDS |
| TCTTCGGCACTTCTTCAATT+TGG | 0.175338 | 7.1:+47822588 | None:intergenic |
| AATAGCCGTTCAGACTTTAA+TGG | 0.204493 | 7.1:-47820142 | MS.gene027297:CDS |
| GAAGTCTACAATCCAGAAAA+TGG | 0.212664 | 7.1:-47822740 | MS.gene027297:CDS |
| ATACTAGAACCATTTGTTTC+AGG | 0.227152 | 7.1:+47822210 | None:intergenic |
| CTTCGGCACTTCTTCAATTT+GGG | 0.237490 | 7.1:+47822589 | None:intergenic |
| GGAGTCATTGTCTTGGTCAC+TGG | 0.284606 | 7.1:-47823105 | MS.gene027297:CDS |
| GAGAATATGTTCAAGAAGTT+TGG | 0.285207 | 7.1:-47821967 | MS.gene027297:CDS |
| TTTAATGGAAGAGGGGAATA+TGG | 0.309866 | 7.1:-47820127 | MS.gene027297:CDS |
| ATCTACCACTGCTCGTGTTC+CGG | 0.316044 | 7.1:-47819969 | MS.gene027297:CDS |
| GGCAGAGGGCATGGAAACTA+TGG | 0.318726 | 7.1:-47820319 | MS.gene027297:CDS |
| ACACGAGCAGTGGTAGATTT+AGG | 0.324177 | 7.1:+47819974 | None:intergenic |
| GAGTCATTGTCTTGGTCACT+GGG | 0.328550 | 7.1:-47823104 | MS.gene027297:CDS |
| TATGGAAATAGCCGAAGTTT+TGG | 0.332929 | 7.1:-47820250 | MS.gene027297:CDS |
| TGGACACCGCCACTCTTGAT+AGG | 0.341350 | 7.1:+47821943 | None:intergenic |
| GCAAGAGGGCATGGAAACTA+TGG | 0.365956 | 7.1:-47820268 | MS.gene027297:CDS |
| GTGGATGCACAAGAGTCTTT+TGG | 0.375158 | 7.1:-47823132 | MS.gene027297:CDS |
| GCTGCTTTCTGTGAATCATT+AGG | 0.376741 | 7.1:+47822662 | None:intergenic |
| TACACAGAAGGTAGCTGAAT+TGG | 0.396416 | 7.1:-47822615 | MS.gene027297:CDS |
| GGGAATATGGATATGGATAT+AGG | 0.400347 | 7.1:-47820114 | MS.gene027297:CDS |
| ATACCTTTGCTGTCCTAACT+TGG | 0.400943 | 7.1:+47821923 | None:intergenic |
| GGAAGAGGGGAATATGGATA+TGG | 0.401045 | 7.1:-47820121 | MS.gene027297:CDS |
| AGGGCATGTGTAGCAGTTCC+AGG | 0.407057 | 7.1:+47821994 | None:intergenic |
| TCAACAAGAACCTCAGAAAC+AGG | 0.415714 | 7.1:+47822689 | None:intergenic |
| TAAAACCTATGCACATGCTC+AGG | 0.418125 | 7.1:+47823767 | None:intergenic |
| TGGATATAGGAATGGCAATC+GGG | 0.426348 | 7.1:-47820101 | MS.gene027297:CDS |
| ATGGATATAGGAATGGCAAT+CGG | 0.428631 | 7.1:-47820102 | MS.gene027297:CDS |
| CACAGAAGCAGCTGTCATTA+CGG | 0.429670 | 7.1:+47822293 | None:intergenic |
| AGCATCATGTTACCATTCTC+AGG | 0.433770 | 7.1:+47822925 | None:intergenic |
| TTCCTTGCTCCTCAAGAGAA+AGG | 0.437287 | 7.1:-47823033 | MS.gene027297:CDS |
| TGACTGCTGAGGATGGTGAT+AGG | 0.438498 | 7.1:-47822772 | MS.gene027297:CDS |
| AGTGTTGGATCCTCCTGTGC+TGG | 0.440145 | 7.1:-47822822 | MS.gene027297:CDS |
| TGACGGTCATTGATCAGAAT+TGG | 0.440721 | 7.1:+47821219 | None:intergenic |
| AGAGTGGCGGTGTCCAAGTT+AGG | 0.440879 | 7.1:-47821936 | MS.gene027297:CDS |
| CCGATGATACCATCTGGTTC+AGG | 0.443109 | 7.1:+47823719 | None:intergenic |
| TTGGTCACTGGGTTTATGAT+AGG | 0.445866 | 7.1:-47823093 | MS.gene027297:CDS |
| GACCGAGCTTACTGACATCT+TGG | 0.456560 | 7.1:+47823744 | None:intergenic |
| AACAGTCGTGGAGACTATAA+TGG | 0.461729 | 7.1:-47820178 | MS.gene027297:CDS |
| CGTTCAGACTTTAATGGAAG+AGG | 0.468224 | 7.1:-47820136 | MS.gene027297:CDS |
| ATGGAGGCATATGATTTCTT+CGG | 0.469501 | 7.1:+47822572 | None:intergenic |
| GCCACTCAGTTTCAGGGATG+AGG | 0.470258 | 7.1:-47820293 | MS.gene027297:CDS |
| ATTTATTTGAGAGGGCTGCC+TGG | 0.473653 | 7.1:-47822012 | MS.gene027297:CDS |
| ACTCTTGTGCATCCACAGAT+AGG | 0.475539 | 7.1:+47823139 | None:intergenic |
| TGACCGTCACGTTGTGGTAG+AGG | 0.480519 | 7.1:-47821205 | MS.gene027297:CDS |
| TTCTGTTCAGGTTATGGCAG+AGG | 0.481492 | 7.1:-47820334 | MS.gene027297:intron |
| AAGTCTACAATCCAGAAAAT+GGG | 0.483272 | 7.1:-47822739 | MS.gene027297:CDS |
| GGAGATCCAATGTCATGATC+AGG | 0.484436 | 7.1:+47822955 | None:intergenic |
| TGTTGATGAAAATGAAATCA+AGG | 0.484974 | 7.1:-47822980 | MS.gene027297:CDS |
| TGACAAGAAGATACTGTCAA+TGG | 0.484996 | 7.1:-47823187 | MS.gene027297:CDS |
| GATGAGGGAGCAAGAGGGCA+TGG | 0.486475 | 7.1:-47820277 | MS.gene027297:CDS |
| GTTTATCAGGGATTTCACTT+TGG | 0.487116 | 7.1:-47821822 | MS.gene027297:intron |
| ACGATTCATGCGGCCACCAT+TGG | 0.494198 | 7.1:+47820024 | None:intergenic |
| TCTCCTGCCTCTCCTGAGAA+TGG | 0.504733 | 7.1:-47822937 | MS.gene027297:intron |
| ACAAAGTAGCCTTTCTCTTG+AGG | 0.505893 | 7.1:+47823024 | None:intergenic |
| GCTACCTTCTGTGTATCATC+AGG | 0.507667 | 7.1:+47822623 | None:intergenic |
| GGAACTTGTGTCTCCAGCAC+AGG | 0.507872 | 7.1:+47822809 | None:intergenic |
| ATAGATATACATACAACATC+AGG | 0.509761 | 7.1:+47824093 | None:intergenic |
| GCAGTCACAGATATTTGCTC+TGG | 0.513035 | 7.1:+47822788 | None:intergenic |
| TTACCATTCTCAGGAGAGGC+AGG | 0.514038 | 7.1:+47822934 | None:intergenic |
| TGGAAGGCCACTCAGTTTCA+GGG | 0.515875 | 7.1:-47820299 | MS.gene027297:CDS |
| TCAGGTTATGGCAGAGGGCA+TGG | 0.518859 | 7.1:-47820328 | MS.gene027297:intron |
| TCCAGTGTGCCTGAAACAAA+TGG | 0.519573 | 7.1:-47822219 | MS.gene027297:CDS |
| TACCAAGATGTCAGTAAGCT+CGG | 0.526213 | 7.1:-47823746 | MS.gene027297:CDS |
| GCTATTCAATTTATTTGAGA+GGG | 0.527276 | 7.1:-47822020 | MS.gene027297:CDS |
| AATGATTCACAGAAAGCAGC+TGG | 0.531023 | 7.1:-47822659 | MS.gene027297:CDS |
| GGCTATTCAATTTATTTGAG+AGG | 0.531523 | 7.1:-47822021 | MS.gene027297:CDS |
| GACAAGAAGATACTGTCAAT+GGG | 0.533669 | 7.1:-47823186 | MS.gene027297:CDS |
| ACCATTTGTTTCAGGCACAC+TGG | 0.537368 | 7.1:+47822218 | None:intergenic |
| GCCGCATGAATCGTACTGGC+GGG | 0.538870 | 7.1:-47820015 | MS.gene027297:CDS |
| GTTCAGACTTTAATGGAAGA+GGG | 0.540785 | 7.1:-47820135 | MS.gene027297:CDS |
| CGTGTTCCGGCCTCTGCTTG+AGG | 0.544497 | 7.1:-47819956 | None:intergenic |
| TCTGTTCAGGTTATGGCAGA+GGG | 0.545340 | 7.1:-47820333 | MS.gene027297:intron |
| GGTGGCCGCATGAATCGTAC+TGG | 0.548485 | 7.1:-47820019 | MS.gene027297:CDS |
| GTAGCTTAAGGTAATGAAAG+AGG | 0.550794 | 7.1:-47822331 | MS.gene027297:intron |
| GGATATAGGAATGGCAATCG+GGG | 0.554183 | 7.1:-47820100 | MS.gene027297:CDS |
| TCTAGTATAAGTACTAATGA+AGG | 0.557933 | 7.1:-47822195 | MS.gene027297:CDS |
| AAGGAACCTGATCATGACAT+TGG | 0.558690 | 7.1:-47822961 | MS.gene027297:CDS |
| AGAGGCCGGAACACGAGCAG+TGG | 0.559072 | 7.1:+47819964 | None:intergenic |
| TAGCTTCCTCAAGCAGAGGC+CGG | 0.560957 | 7.1:+47819950 | None:intergenic |
| AGTCTCCACGGCCAAAACTT+CGG | 0.562377 | 7.1:+47820239 | None:intergenic |
| TTCAGGGATGAGGGAGCAAG+AGG | 0.562453 | 7.1:-47820283 | MS.gene027297:CDS |
| CCACTCAGTTTCAGGGATGA+GGG | 0.563881 | 7.1:-47820292 | MS.gene027297:CDS |
| GACTGCTGAGGATGGTGATA+GGG | 0.564877 | 7.1:-47822771 | MS.gene027297:CDS |
| AGTATAAGTACTAATGAAGG+TGG | 0.568379 | 7.1:-47822192 | MS.gene027297:CDS |
| CGTGGAGACTACAATGGCCG+TGG | 0.570491 | 7.1:-47820226 | MS.gene027297:CDS |
| CTCTTCCATTAAAGTCTGAA+CGG | 0.573202 | 7.1:+47820137 | None:intergenic |
| CCTGAACCAGATGGTATCAT+CGG | 0.573611 | 7.1:-47823719 | MS.gene027297:CDS |
| GGCCGCATGAATCGTACTGG+CGG | 0.574511 | 7.1:-47820016 | MS.gene027297:CDS |
| TTTGTTTCAGGCACACTGGA+TGG | 0.574807 | 7.1:+47822222 | None:intergenic |
| TATGGATATGGATATAGGAA+TGG | 0.575183 | 7.1:-47820109 | MS.gene027297:CDS |
| ACGTTGTGGTAGAGGAAAAG+AGG | 0.577308 | 7.1:-47821197 | MS.gene027297:CDS |
| AGCCTTTCTCTTGAGGAGCA+AGG | 0.578397 | 7.1:+47823031 | None:intergenic |
| GGACACCGCCACTCTTGATA+GGG | 0.579408 | 7.1:+47821944 | None:intergenic |
| GCAAGTGTCTGTTGAAGAAG+AGG | 0.582143 | 7.1:-47822717 | MS.gene027297:CDS |
| AAAACCTATGCACATGCTCA+GGG | 0.586213 | 7.1:+47823768 | None:intergenic |
| AGAGGAAGCTCCTGTTTCTG+AGG | 0.590853 | 7.1:-47822699 | MS.gene027297:CDS |
| CACTGGGTTTATGATAGGAA+AGG | 0.597377 | 7.1:-47823088 | MS.gene027297:CDS |
| AATGATCACATGGGAACCAA+TGG | 0.597486 | 7.1:-47820040 | MS.gene027297:CDS |
| GATCACATGGGAACCAATGG+TGG | 0.598618 | 7.1:-47820037 | MS.gene027297:CDS |
| TGCTGCTCTAAGTGCAATCG+AGG | 0.599741 | 7.1:-47821775 | MS.gene027297:intron |
| CGTGGAGACTATAATGGCCG+CGG | 0.602209 | 7.1:-47820172 | MS.gene027297:CDS |
| AATGGCCGTGGCGACTACAA+TGG | 0.603350 | 7.1:-47820214 | MS.gene027297:CDS |
| ACTTGTGTCTCCAGCACAGG+AGG | 0.604167 | 7.1:+47822812 | None:intergenic |
| TCTTGAACATATTCTCAACA+AGG | 0.606195 | 7.1:+47821974 | None:intergenic |
| GCAGCTGTCATTACGGAGGA+CGG | 0.611765 | 7.1:+47822300 | None:intergenic |
| CCCTCATCCCTGAAACTGAG+TGG | 0.612765 | 7.1:+47820292 | None:intergenic |
| GATCAATGACCGTCACGTTG+TGG | 0.613088 | 7.1:-47821211 | MS.gene027297:CDS |
| CGTGGCGACTACAATGGCCG+TGG | 0.614859 | 7.1:-47820208 | MS.gene027297:CDS |
| CACGACTGTTATAGTCTCCA+CGG | 0.614892 | 7.1:+47820191 | None:intergenic |
| GCAAATATCTGTGACTGCTG+AGG | 0.616027 | 7.1:-47822783 | MS.gene027297:CDS |
| GTGATGCCGATGATACCATC+TGG | 0.617679 | 7.1:+47823713 | None:intergenic |
| CATACAACATCAGGTGCCGC+AGG | 0.618756 | 7.1:+47824102 | None:intergenic |
| CACGGCCATTGTAGTCGCCA+CGG | 0.619653 | 7.1:+47820209 | None:intergenic |
| CACGGCCATTGTAGTCTCCA+CGG | 0.619653 | 7.1:+47820227 | None:intergenic |
| ATATCTGTGACTGCTGAGGA+TGG | 0.626749 | 7.1:-47822779 | MS.gene027297:CDS |
| TTCAGACTTTAATGGAAGAG+GGG | 0.635546 | 7.1:-47820134 | MS.gene027297:CDS |
| TAGTGCGGAGATCCTATCTG+TGG | 0.636226 | 7.1:-47823151 | MS.gene027297:CDS |
| AAAGCCCTGAGCATGTGCAT+AGG | 0.637108 | 7.1:-47823772 | MS.gene027297:CDS |
| CTCGGTCGTCCTGAACCAGA+TGG | 0.638160 | 7.1:-47823728 | MS.gene027297:CDS |
| TGTTCCTGATGATACACAGA+AGG | 0.641677 | 7.1:-47822627 | MS.gene027297:CDS |
| GAAAAGAGGTCAACTAATCG+AGG | 0.644776 | 7.1:-47821183 | MS.gene027297:intron |
| GGAAGAGACTCTTACAATGG+AGG | 0.644795 | 7.1:+47822556 | None:intergenic |
| CATGTTACCATTCTCAGGAG+AGG | 0.648742 | 7.1:+47822930 | None:intergenic |
| GGGTTATAGTGAACTTAGTG+CGG | 0.649351 | 7.1:-47823166 | MS.gene027297:CDS |
| TCAGGGATGAGGGAGCAAGA+GGG | 0.650471 | 7.1:-47820282 | MS.gene027297:CDS |
| AAGTTTGGCCCTATCAAGAG+TGG | 0.651104 | 7.1:-47821952 | MS.gene027297:CDS |
| TTTCCTCTACCACAACGTGA+CGG | 0.651604 | 7.1:+47821202 | None:intergenic |
| TATAGGAATGGCAATCGGGG+AGG | 0.652840 | 7.1:-47820097 | MS.gene027297:CDS |
| CTTGAACATATTCTCAACAA+GGG | 0.657058 | 7.1:+47821975 | None:intergenic |
| CATCGGCATCACAACTACAA+TGG | 0.657270 | 7.1:-47823702 | MS.gene027297:CDS |
| TTTGGCCGTGGAGACTACAA+TGG | 0.657644 | 7.1:-47820232 | MS.gene027297:CDS |
| GAGGGCATGGAAACTATGGA+AGG | 0.657762 | 7.1:-47820315 | MS.gene027297:CDS |
| TTCAGAGAATCAAGTTCCTG+CGG | 0.661608 | 7.1:-47824118 | MS.gene027297:CDS |
| CGTGGAGACTATAACAGTCG+TGG | 0.663202 | 7.1:-47820190 | MS.gene027297:CDS |
| ATATCAGAGAAATGATCACA+TGG | 0.669840 | 7.1:-47820050 | MS.gene027297:CDS |
| GGAAACAATCCAGAAACTGA+AGG | 0.670855 | 7.1:-47822171 | MS.gene027297:intron |
| TGTATAGCTTCCTCAAGCAG+AGG | 0.677594 | 7.1:+47819946 | None:intergenic |
| TGTCCAAGTTAGGACAGCAA+AGG | 0.677658 | 7.1:-47821926 | MS.gene027297:intron |
| TCAGGCACACTGGATGGTGA+AGG | 0.681317 | 7.1:+47822228 | None:intergenic |
| ATAGTAGTACTGTTCAACAA+AGG | 0.683995 | 7.1:+47823805 | None:intergenic |
| TTTGGCCCTATCAAGAGTGG+CGG | 0.685024 | 7.1:-47821949 | MS.gene027297:CDS |
| ACCCGCCAGTACGATTCATG+CGG | 0.688659 | 7.1:+47820014 | None:intergenic |
| TATCAGAGAAATGATCACAT+GGG | 0.696631 | 7.1:-47820049 | MS.gene027297:CDS |
| AGAAGCAGCTGTCATTACGG+AGG | 0.730010 | 7.1:+47822296 | None:intergenic |
| AACGGCTATTGAAGTCTCCG+CGG | 0.748532 | 7.1:+47820155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAACAAAAAAACA+GGG | + | chr7.1:47822201-47822220 | None:intergenic | 10.0% |
| !! | TATACATATACATATATATA+TGG | + | chr7.1:47821948-47821967 | None:intergenic | 10.0% |
| !! | TTAAAAAAAAACAAAAAAAC+AGG | + | chr7.1:47822202-47822221 | None:intergenic | 10.0% |
| !!! | AATAAAATGTTTTTAAAACT+TGG | - | chr7.1:47823185-47823204 | MS.gene027297:CDS | 10.0% |
| !!! | TTTATTATGTTATATTTTGT+GGG | - | chr7.1:47823512-47823531 | MS.gene027297:intron | 10.0% |
| !!! | TTTTATTATGTTATATTTTG+TGG | - | chr7.1:47823511-47823530 | MS.gene027297:intron | 10.0% |
| !! | AACTTAGATTCTAATAAATA+TGG | - | chr7.1:47820766-47820785 | MS.gene027297:intron | 15.0% |
| !! | GATAACTAATGAAATTTATT+GGG | - | chr7.1:47822990-47823009 | MS.gene027297:CDS | 15.0% |
| !! | TGATAACTAATGAAATTTAT+TGG | - | chr7.1:47822989-47823008 | MS.gene027297:CDS | 15.0% |
| !!! | CTTTAATTTGTATCTTTATT+TGG | - | chr7.1:47822809-47822828 | MS.gene027297:CDS | 15.0% |
| !!! | TTATTATGTTATATTTTGTG+GGG | - | chr7.1:47823513-47823532 | MS.gene027297:intron | 15.0% |
| !! | TAACATTTACAATGAAAACT+CGG | + | chr7.1:47821594-47821613 | None:intergenic | 20.0% |
| !! | TAGAATCTAAGTTAACAAAT+GGG | + | chr7.1:47820759-47820778 | None:intergenic | 20.0% |
| !! | TATTTATTGATGTGTTCAAT+TGG | - | chr7.1:47822021-47822040 | MS.gene027297:CDS | 20.0% |
| !! | TTAGAATCTAAGTTAACAAA+TGG | + | chr7.1:47820760-47820779 | None:intergenic | 20.0% |
| !!! | ATAACTTTTTGGCATATTAA+TGG | - | chr7.1:47822239-47822258 | MS.gene027297:CDS | 20.0% |
| !!! | ATTTTTAATGTGATTGGTTT+AGG | - | chr7.1:47820247-47820266 | MS.gene027297:CDS | 20.0% |
| !!! | GTTTTAAAAAGGATACAAAA+TGG | - | chr7.1:47823377-47823396 | MS.gene027297:intron | 20.0% |
| !!! | TAACTTTTTGGCATATTAAT+GGG | - | chr7.1:47822240-47822259 | MS.gene027297:CDS | 20.0% |
| !!! | TTGCTTTTTTATTTGGTTTT+TGG | - | chr7.1:47822725-47822744 | MS.gene027297:CDS | 20.0% |
| ! | AAAAAGAATTTAACCCTCTA+CGG | + | chr7.1:47822682-47822701 | None:intergenic | 25.0% |
| ! | AAAAGTTATCACAACAAAGT+TGG | + | chr7.1:47823494-47823513 | None:intergenic | 25.0% |
| ! | AAGATATTGTACAAACCAAT+TGG | + | chr7.1:47820536-47820555 | None:intergenic | 25.0% |
| ! | AATAAGCAACTTAAGTTAAC+CGG | + | chr7.1:47821226-47821245 | None:intergenic | 25.0% |
| ! | AGAAATCTCTTTACAACTTA+TGG | + | chr7.1:47823050-47823069 | None:intergenic | 25.0% |
| ! | ATAGATATACATACAACATC+AGG | + | chr7.1:47819994-47820013 | None:intergenic | 25.0% |
| ! | GCTATTCAATTTATTTGAGA+GGG | - | chr7.1:47822064-47822083 | MS.gene027297:intron | 25.0% |
| ! | TCAATATTCATATCTCCAAT+TGG | - | chr7.1:47820518-47820537 | MS.gene027297:intron | 25.0% |
| ! | TCTAGTATAAGTACTAATGA+AGG | - | chr7.1:47821889-47821908 | MS.gene027297:intron | 25.0% |
| !! | AATACTTTTATCTGCATTTC+AGG | - | chr7.1:47822837-47822856 | MS.gene027297:intron | 25.0% |
| !! | TGTTGATGAAAATGAAATCA+AGG | - | chr7.1:47821104-47821123 | MS.gene027297:intron | 25.0% |
| !! | TTATTATTTTCCTCTGTAAC+TGG | - | chr7.1:47821720-47821739 | MS.gene027297:intron | 25.0% |
| !!! | AGTGCTTTTTTATTTAGTAC+TGG | - | chr7.1:47822926-47822945 | MS.gene027297:intron | 25.0% |
| !!! | CTCTGAAATAATTTCTTTCT+GGG | + | chr7.1:47823640-47823659 | None:intergenic | 25.0% |
| !!! | TGACTGATTTTTAATGTGAT+TGG | - | chr7.1:47820241-47820260 | MS.gene027297:CDS | 25.0% |
| AAAACACTCAATAGTGTACA+AGG | + | chr7.1:47823335-47823354 | None:intergenic | 30.0% | |
| AAACAATTACACCAATGCAT+AGG | + | chr7.1:47820617-47820636 | None:intergenic | 30.0% | |
| AAATCCTTGTACACTATTGA+GGG | - | chr7.1:47823328-47823347 | MS.gene027297:intron | 30.0% | |
| AAATTTATTGGGTTCGTGTA+TGG | - | chr7.1:47823001-47823020 | MS.gene027297:CDS | 30.0% | |
| AAGTCTACAATCCAGAAAAT+GGG | - | chr7.1:47821345-47821364 | MS.gene027297:intron | 30.0% | |
| AATATCACTATGATAAACGC+AGG | + | chr7.1:47822005-47822024 | None:intergenic | 30.0% | |
| ACTGGATTATGTTGTCTTTA+AGG | - | chr7.1:47822656-47822675 | MS.gene027297:CDS | 30.0% | |
| AGTATAAGTACTAATGAAGG+TGG | - | chr7.1:47821892-47821911 | MS.gene027297:intron | 30.0% | |
| ATACTAGAACCATTTGTTTC+AGG | + | chr7.1:47821877-47821896 | None:intergenic | 30.0% | |
| ATAGTAGTACTGTTCAACAA+AGG | + | chr7.1:47820282-47820301 | None:intergenic | 30.0% | |
| ATATCACTATGATAAACGCA+GGG | + | chr7.1:47822004-47822023 | None:intergenic | 30.0% | |
| ATATCAGAGAAATGATCACA+TGG | - | chr7.1:47824034-47824053 | MS.gene027297:intron | 30.0% | |
| CACCATTTCTCATAATTACA+GGG | - | chr7.1:47823128-47823147 | MS.gene027297:CDS | 30.0% | |
| CATGTGCAGAAATAGTAATT+TGG | + | chr7.1:47822971-47822990 | None:intergenic | 30.0% | |
| CCAGAAAGAAATTATTTCAG+AGG | - | chr7.1:47823638-47823657 | MS.gene027297:intron | 30.0% | |
| CTACATGCAAATGAATAGAA+AGG | + | chr7.1:47822525-47822544 | None:intergenic | 30.0% | |
| CTTGAACATATTCTCAACAA+GGG | + | chr7.1:47822112-47822131 | None:intergenic | 30.0% | |
| CTTTATAGCTGTCTATGTAT+TGG | - | chr7.1:47820432-47820451 | MS.gene027297:intron | 30.0% | |
| GAGAATATGTTCAAGAAGTT+TGG | - | chr7.1:47822117-47822136 | MS.gene027297:intron | 30.0% | |
| GGCTATTCAATTTATTTGAG+AGG | - | chr7.1:47822063-47822082 | MS.gene027297:intron | 30.0% | |
| GTTAACAAATGGGAATTTAG+AGG | + | chr7.1:47820749-47820768 | None:intergenic | 30.0% | |
| TAAATCCTTGTACACTATTG+AGG | - | chr7.1:47823354-47823373 | MS.gene027297:intron | 30.0% | |
| TAACCATGTTGTAATACTCT+TGG | - | chr7.1:47820570-47820589 | MS.gene027297:intron | 30.0% | |
| TACACTAGTTGTTGAACAAA+AGG | + | chr7.1:47823236-47823255 | None:intergenic | 30.0% | |
| TACCCTGTAATTATGAGAAA+TGG | + | chr7.1:47823133-47823152 | None:intergenic | 30.0% | |
| TATCAACTCCATAATGTCTT+TGG | + | chr7.1:47823160-47823179 | None:intergenic | 30.0% | |
| TATCAGAGAAATGATCACAT+GGG | - | chr7.1:47824035-47824054 | MS.gene027297:intron | 30.0% | |
| TATGGATATGGATATAGGAA+TGG | - | chr7.1:47823975-47823994 | MS.gene027297:intron | 30.0% | |
| TATTCTTGACTCTATTACAC+TGG | - | chr7.1:47821621-47821640 | MS.gene027297:intron | 30.0% | |
| TCTTGAACATATTCTCAACA+AGG | + | chr7.1:47822113-47822132 | None:intergenic | 30.0% | |
| TTAAAGACAACATAATCCAG+TGG | + | chr7.1:47822657-47822676 | None:intergenic | 30.0% | |
| ! | AAACTTTTGGCATACAACTA+GGG | - | chr7.1:47823673-47823692 | MS.gene027297:intron | 30.0% |
| ! | AATCGCTATTTCACAACATT+AGG | - | chr7.1:47820180-47820199 | MS.gene027297:CDS | 30.0% |
| ! | TAATATGCTTTTCTGTAGCT+GGG | + | chr7.1:47823436-47823455 | None:intergenic | 30.0% |
| ! | TACTGGTTAATTTCACATCA+AGG | - | chr7.1:47822943-47822962 | MS.gene027297:CDS | 30.0% |
| ! | TATGGATTGATTGTTAGAAG+TGG | - | chr7.1:47820784-47820803 | MS.gene027297:intron | 30.0% |
| ! | TTATATTTTGTGGGGTTCAT+TGG | - | chr7.1:47823521-47823540 | MS.gene027297:intron | 30.0% |
| ! | TTTTCAAATAACGCCTATAG+CGG | + | chr7.1:47820107-47820126 | None:intergenic | 30.0% |
| ! | TTTTTGTTCCATACATTTGC+CGG | - | chr7.1:47821204-47821223 | MS.gene027297:CDS | 30.0% |
| !! | AAAAGCATCAGCAAGTAATT+AGG | + | chr7.1:47820703-47820722 | None:intergenic | 30.0% |
| !! | AAGTCTCAAAGGTATTGATT+TGG | - | chr7.1:47823262-47823281 | MS.gene027297:intron | 30.0% |
| !! | CCTCTGAAATAATTTCTTTC+TGG | + | chr7.1:47823641-47823660 | None:intergenic | 30.0% |
| !! | GCATATTAATGGGTTTATCA+GGG | - | chr7.1:47822250-47822269 | MS.gene027297:CDS | 30.0% |
| !! | TTAATGTGATTGGTTTAGGT+TGG | - | chr7.1:47820251-47820270 | MS.gene027297:CDS | 30.0% |
| !!! | CACTATTGAGGGTTTTAAAA+AGG | - | chr7.1:47823366-47823385 | MS.gene027297:intron | 30.0% |
| !!! | CACTTCGTTGCTTTTTTATT+TGG | - | chr7.1:47822718-47822737 | MS.gene027297:CDS | 30.0% |
| !!! | TTAAGGCGTGGTTTTATTAA+GGG | - | chr7.1:47821181-47821200 | MS.gene027297:intron | 30.0% |
| !!! | TTGATTTGGTCACTTTTTGA+TGG | - | chr7.1:47823276-47823295 | MS.gene027297:intron | 30.0% |
| AAAACCCTCAATAGTGTACA+AGG | + | chr7.1:47823362-47823381 | None:intergenic | 35.0% | |
| AAAATGCACACAAGAACCAA+AGG | + | chr7.1:47820483-47820502 | None:intergenic | 35.0% | |
| AAGTTCACTGTAGAACAAGA+TGG | + | chr7.1:47822436-47822455 | None:intergenic | 35.0% | |
| AGAAAGGAAGAGGGAATTTA+TGG | + | chr7.1:47821552-47821571 | None:intergenic | 35.0% | |
| ATGGATATAGGAATGGCAAT+CGG | - | chr7.1:47823982-47824001 | MS.gene027297:intron | 35.0% | |
| ATTTGCATGTAGTGTTTGTG+TGG | - | chr7.1:47822533-47822552 | MS.gene027297:intron | 35.0% | |
| CAAACACAATGAGAACTTAG+TGG | + | chr7.1:47822585-47822604 | None:intergenic | 35.0% | |
| CACTAAGTTCTCATTGTGTT+TGG | - | chr7.1:47822583-47822602 | MS.gene027297:CDS | 35.0% | |
| CATACAATGTTGTGAATCGT+GGG | - | chr7.1:47820029-47820048 | MS.gene027297:CDS | 35.0% | |
| CCACCATTTCTCATAATTAC+AGG | - | chr7.1:47823127-47823146 | MS.gene027297:CDS | 35.0% | |
| CCAGGACACATGAAAATTAA+GGG | + | chr7.1:47822609-47822628 | None:intergenic | 35.0% | |
| CCTGTAATTATGAGAAATGG+TGG | + | chr7.1:47823130-47823149 | None:intergenic | 35.0% | |
| CTAGTTGTATGCCAAAAGTT+TGG | + | chr7.1:47823674-47823693 | None:intergenic | 35.0% | |
| GAAGTCTACAATCCAGAAAA+TGG | - | chr7.1:47821344-47821363 | MS.gene027297:intron | 35.0% | |
| GAATGGTAACATGATGCTTA+AGG | - | chr7.1:47821164-47821183 | MS.gene027297:intron | 35.0% | |
| GAATTTAGAGGATCGTACAA+TGG | + | chr7.1:47820737-47820756 | None:intergenic | 35.0% | |
| GACAAGAAGATACTGTCAAT+GGG | - | chr7.1:47820898-47820917 | MS.gene027297:intron | 35.0% | |
| GGGAATATGGATATGGATAT+AGG | - | chr7.1:47823970-47823989 | MS.gene027297:intron | 35.0% | |
| GGTGGACAGAAATTTATTGA+AGG | + | chr7.1:47823112-47823131 | None:intergenic | 35.0% | |
| GTAGCTTAAGGTAATGAAAG+AGG | - | chr7.1:47821753-47821772 | MS.gene027297:intron | 35.0% | |
| GTTTATCAGGGATTTCACTT+TGG | - | chr7.1:47822262-47822281 | MS.gene027297:CDS | 35.0% | |
| TAAAGAGATTTCTCTCACAC+TGG | - | chr7.1:47823057-47823076 | MS.gene027297:CDS | 35.0% | |
| TAAGTTAACCGGCAAATGTA+TGG | + | chr7.1:47821215-47821234 | None:intergenic | 35.0% | |
| TACATATCCAGAGCAATGTT+CGG | + | chr7.1:47820651-47820670 | None:intergenic | 35.0% | |
| TATGGAAGAGACTCTTACAA+TGG | + | chr7.1:47821534-47821553 | None:intergenic | 35.0% | |
| TCATACAATGTTGTGAATCG+TGG | - | chr7.1:47820028-47820047 | MS.gene027297:CDS | 35.0% | |
| TCTTCTTTCTACAAATCCAC+AGG | - | chr7.1:47822393-47822412 | MS.gene027297:intron | 35.0% | |
| TGACAAGAAGATACTGTCAA+TGG | - | chr7.1:47820897-47820916 | MS.gene027297:intron | 35.0% | |
| TTTCTTATGCTTCTGAGTTG+TGG | - | chr7.1:47822495-47822514 | MS.gene027297:intron | 35.0% | |
| ! | ATGGAGGCATATGATTTCTT+CGG | + | chr7.1:47821515-47821534 | None:intergenic | 35.0% |
| ! | CAAACTTTTGGCATACAACT+AGG | - | chr7.1:47823672-47823691 | MS.gene027297:intron | 35.0% |
| ! | GCTGCTAGCTAATAACTTTT+TGG | - | chr7.1:47822228-47822247 | MS.gene027297:CDS | 35.0% |
| ! | GTAATATGCTTTTCTGTAGC+TGG | + | chr7.1:47823437-47823456 | None:intergenic | 35.0% |
| ! | GTGTAGATTTGAAGTCTCAA+AGG | - | chr7.1:47823251-47823270 | MS.gene027297:intron | 35.0% |
| ! | TATGGAAATAGCCGAAGTTT+TGG | - | chr7.1:47823834-47823853 | MS.gene027297:intron | 35.0% |
| ! | TGCAATCGTCTGATTTGTAT+TGG | - | chr7.1:47822760-47822779 | MS.gene027297:CDS | 35.0% |
| ! | TTATTTTCCTCTGTAACTGG+TGG | - | chr7.1:47821723-47821742 | MS.gene027297:intron | 35.0% |
| !! | CAAAACTTCTAAAATCAGCC+AGG | + | chr7.1:47822627-47822646 | None:intergenic | 35.0% |
| !! | GGCATATTAATGGGTTTATC+AGG | - | chr7.1:47822249-47822268 | MS.gene027297:CDS | 35.0% |
| !! | GTGCAATCGAGGTATTTTAT+TGG | - | chr7.1:47822320-47822339 | MS.gene027297:CDS | 35.0% |
| !! | TGCATTTTCTGTTCAGGTTA+TGG | - | chr7.1:47823744-47823763 | MS.gene027297:CDS | 35.0% |
| !!! | CTTAAGGCGTGGTTTTATTA+AGG | - | chr7.1:47821180-47821199 | MS.gene027297:intron | 35.0% |
| !!! | GAAGTTTTGTTCATTACCAC+TGG | - | chr7.1:47822638-47822657 | MS.gene027297:CDS | 35.0% |
| AAAACCTATGCACATGCTCA+GGG | + | chr7.1:47820319-47820338 | None:intergenic | 40.0% | |
| AACAGTCGTGGAGACTATAA+TGG | - | chr7.1:47823906-47823925 | MS.gene027297:intron | 40.0% | |
| AAGGAACCTGATCATGACAT+TGG | - | chr7.1:47821123-47821142 | MS.gene027297:intron | 40.0% | |
| AATGATCACATGGGAACCAA+TGG | - | chr7.1:47824044-47824063 | MS.gene027297:intron | 40.0% | |
| AATGATTCACAGAAAGCAGC+TGG | - | chr7.1:47821425-47821444 | MS.gene027297:intron | 40.0% | |
| ACAAAGTAGCCTTTCTCTTG+AGG | + | chr7.1:47821063-47821082 | None:intergenic | 40.0% | |
| ACACCAATGCATAGGCATAT+GGG | + | chr7.1:47820609-47820628 | None:intergenic | 40.0% | |
| ACTGTAGAACAAGATGGCAA+AGG | + | chr7.1:47822430-47822449 | None:intergenic | 40.0% | |
| AGAAAGAGCAAGAAAGGAAG+AGG | + | chr7.1:47821562-47821581 | None:intergenic | 40.0% | |
| AGCATCAGCAAGTAATTAGG+TGG | + | chr7.1:47820700-47820719 | None:intergenic | 40.0% | |
| AGCATCATGTTACCATTCTC+AGG | + | chr7.1:47821162-47821181 | None:intergenic | 40.0% | |
| CAACTCCATAATGTCTTTGG+AGG | + | chr7.1:47823157-47823176 | None:intergenic | 40.0% | |
| CAACTTATGGCATGCAAACA+AGG | + | chr7.1:47823037-47823056 | None:intergenic | 40.0% | |
| CACTGGGTTTATGATAGGAA+AGG | - | chr7.1:47820996-47821015 | MS.gene027297:intron | 40.0% | |
| CATCAGCAAGTAATTAGGTG+GGG | + | chr7.1:47820698-47820717 | None:intergenic | 40.0% | |
| CCTATTTCATTTCACCAAGC+AGG | - | chr7.1:47820870-47820889 | MS.gene027297:intron | 40.0% | |
| CTTCGGCACTTCTTCAATTT+GGG | + | chr7.1:47821498-47821517 | None:intergenic | 40.0% | |
| CTTCTTGTCAATTTCCTGCT+TGG | + | chr7.1:47820887-47820906 | None:intergenic | 40.0% | |
| GAAAAGAGGTCAACTAATCG+AGG | - | chr7.1:47822901-47822920 | MS.gene027297:intron | 40.0% | |
| GAAAGAGCAAGAAAGGAAGA+GGG | + | chr7.1:47821561-47821580 | None:intergenic | 40.0% | |
| GAGTCTAGAAAGAGCAAGAA+AGG | + | chr7.1:47821568-47821587 | None:intergenic | 40.0% | |
| GCAGAACAATAGTGCTATAG+TGG | - | chr7.1:47820150-47820169 | MS.gene027297:CDS | 40.0% | |
| GCATCAGCAAGTAATTAGGT+GGG | + | chr7.1:47820699-47820718 | None:intergenic | 40.0% | |
| GCCAGGACACATGAAAATTA+AGG | + | chr7.1:47822610-47822629 | None:intergenic | 40.0% | |
| GGAAACAATCCAGAAACTGA+AGG | - | chr7.1:47821913-47821932 | MS.gene027297:intron | 40.0% | |
| GGGTTATAGTGAACTTAGTG+CGG | - | chr7.1:47820918-47820937 | MS.gene027297:intron | 40.0% | |
| TAAAACCTATGCACATGCTC+AGG | + | chr7.1:47820320-47820339 | None:intergenic | 40.0% | |
| TACACAGAAGGTAGCTGAAT+TGG | - | chr7.1:47821469-47821488 | MS.gene027297:intron | 40.0% | |
| TACACCAATGCATAGGCATA+TGG | + | chr7.1:47820610-47820629 | None:intergenic | 40.0% | |
| TACCAAGATGTCAGTAAGCT+CGG | - | chr7.1:47820338-47820357 | MS.gene027297:intron | 40.0% | |
| TCAACAAGAACCTCAGAAAC+AGG | + | chr7.1:47821398-47821417 | None:intergenic | 40.0% | |
| TCTTCGGCACTTCTTCAATT+TGG | + | chr7.1:47821499-47821518 | None:intergenic | 40.0% | |
| TGACGGTCATTGATCAGAAT+TGG | + | chr7.1:47822868-47822887 | None:intergenic | 40.0% | |
| TGCCAAAAGTTTGGCAATAC+AGG | + | chr7.1:47823665-47823684 | None:intergenic | 40.0% | |
| TGGATATAGGAATGGCAATC+GGG | - | chr7.1:47823983-47824002 | MS.gene027297:intron | 40.0% | |
| TGTTCCTGATGATACACAGA+AGG | - | chr7.1:47821457-47821476 | MS.gene027297:intron | 40.0% | |
| TTCAGAGAATCAAGTTCCTG+CGG | - | chr7.1:47819966-47819985 | MS.gene027297:CDS | 40.0% | |
| TTGGTCACTGGGTTTATGAT+AGG | - | chr7.1:47820991-47821010 | MS.gene027297:intron | 40.0% | |
| ! | ATACCTTTGCTGTCCTAACT+TGG | + | chr7.1:47822164-47822183 | None:intergenic | 40.0% |
| ! | ATGTTGTGAATCGTGGGTTA+CGG | - | chr7.1:47820035-47820054 | MS.gene027297:CDS | 40.0% |
| ! | CCCTTAATTTTCATGTGTCC+TGG | - | chr7.1:47822606-47822625 | MS.gene027297:CDS | 40.0% |
| ! | CCTGCTTGGTGAAATGAAAT+AGG | + | chr7.1:47820873-47820892 | None:intergenic | 40.0% |
| ! | GCTGCTTTCTGTGAATCATT+AGG | + | chr7.1:47821425-47821444 | None:intergenic | 40.0% |
| ! | GCTGTTTGCATTTTCTGTTC+AGG | - | chr7.1:47823738-47823757 | MS.gene027297:CDS | 40.0% |
| ! | GTCCTGTATTGCCAAACTTT+TGG | - | chr7.1:47823660-47823679 | MS.gene027297:intron | 40.0% |
| ! | TAGTGCTATTGTTCCGCTAT+AGG | - | chr7.1:47820091-47820110 | MS.gene027297:CDS | 40.0% |
| !! | GACAGCAAAGGTATTTCACT+TGG | - | chr7.1:47822170-47822189 | MS.gene027297:intron | 40.0% |
| !! | GAGCCAAGAGTATTACAACA+TGG | + | chr7.1:47820576-47820595 | None:intergenic | 40.0% |
| !!! | GGGATTTCACTTTGGTTTTG+TGG | - | chr7.1:47822270-47822289 | MS.gene027297:CDS | 40.0% |
| !!! | TGGTTTTGTGGAGTTTGAAG+AGG | - | chr7.1:47822282-47822301 | MS.gene027297:CDS | 40.0% |
| AAAGTGCAACAGAGAGAGAG+AGG | + | chr7.1:47820416-47820435 | None:intergenic | 45.0% | |
| AACAGATCCACCAGTTACAG+AGG | + | chr7.1:47821733-47821752 | None:intergenic | 45.0% | |
| AAGTTTGGCCCTATCAAGAG+TGG | - | chr7.1:47822132-47822151 | MS.gene027297:intron | 45.0% | |
| AATAGCCCTCAGCTGTCAAA+AGG | + | chr7.1:47822050-47822069 | None:intergenic | 45.0% | |
| ACACCCATATGCCTATGCAT+TGG | - | chr7.1:47820603-47820622 | MS.gene027297:intron | 45.0% | |
| ACACGAGCAGTGGTAGATTT+AGG | + | chr7.1:47824113-47824132 | None:intergenic | 45.0% | |
| ACCATTTGTTTCAGGCACAC+TGG | + | chr7.1:47821869-47821888 | None:intergenic | 45.0% | |
| ACGTTGTGGTAGAGGAAAAG+AGG | - | chr7.1:47822887-47822906 | MS.gene027297:intron | 45.0% | |
| ACTCTTGTGCATCCACAGAT+AGG | + | chr7.1:47820948-47820967 | None:intergenic | 45.0% | |
| AGAACCAAAGGCTACACATG+AGG | + | chr7.1:47820471-47820490 | None:intergenic | 45.0% | |
| ATATCCAGAGCAATGTTCGG+AGG | + | chr7.1:47820648-47820667 | None:intergenic | 45.0% | |
| ATATCTGTGACTGCTGAGGA+TGG | - | chr7.1:47821305-47821324 | MS.gene027297:intron | 45.0% | |
| ATGGCATGCAAACAAGGAAC+AGG | + | chr7.1:47823031-47823050 | None:intergenic | 45.0% | |
| ATTTATTTGAGAGGGCTGCC+TGG | - | chr7.1:47822072-47822091 | MS.gene027297:intron | 45.0% | |
| CAATCCAGAAACTGAAGGTC+TGG | - | chr7.1:47821918-47821937 | MS.gene027297:intron | 45.0% | |
| CACAGAAGCAGCTGTCATTA+CGG | + | chr7.1:47821794-47821813 | None:intergenic | 45.0% | |
| CACGACTGTTATAGTCTCCA+CGG | + | chr7.1:47823896-47823915 | None:intergenic | 45.0% | |
| CATACCTCATGTGTAGCCTT+TGG | - | chr7.1:47820464-47820483 | MS.gene027297:intron | 45.0% | |
| CATCGGCATCACAACTACAA+TGG | - | chr7.1:47820382-47820401 | MS.gene027297:intron | 45.0% | |
| CATGTTACCATTCTCAGGAG+AGG | + | chr7.1:47821157-47821176 | None:intergenic | 45.0% | |
| CCAACACTGAAAGAAGGTTG+AGG | + | chr7.1:47821250-47821269 | None:intergenic | 45.0% | |
| CCTCAACCTTCTTTCAGTGT+TGG | - | chr7.1:47821247-47821266 | MS.gene027297:intron | 45.0% | |
| CCTGAACCAGATGGTATCAT+CGG | - | chr7.1:47820365-47820384 | MS.gene027297:intron | 45.0% | |
| GAGGATCCAACACTGAAAGA+AGG | + | chr7.1:47821256-47821275 | None:intergenic | 45.0% | |
| GAGTCATTGTCTTGGTCACT+GGG | - | chr7.1:47820980-47820999 | MS.gene027297:intron | 45.0% | |
| GCAAATATCTGTGACTGCTG+AGG | - | chr7.1:47821301-47821320 | MS.gene027297:intron | 45.0% | |
| GCAAGTGTCTGTTGAAGAAG+AGG | - | chr7.1:47821367-47821386 | MS.gene027297:intron | 45.0% | |
| GCAGTCACAGATATTTGCTC+TGG | + | chr7.1:47821299-47821318 | None:intergenic | 45.0% | |
| GCTACCTTCTGTGTATCATC+AGG | + | chr7.1:47821464-47821483 | None:intergenic | 45.0% | |
| GGAAGAGACTCTTACAATGG+AGG | + | chr7.1:47821531-47821550 | None:intergenic | 45.0% | |
| GGAAGAGGGGAATATGGATA+TGG | - | chr7.1:47823963-47823982 | MS.gene027297:intron | 45.0% | |
| GGAGATCCAATGTCATGATC+AGG | + | chr7.1:47821132-47821151 | None:intergenic | 45.0% | |
| GGATATAGGAATGGCAATCG+GGG | - | chr7.1:47823984-47824003 | MS.gene027297:intron | 45.0% | |
| GGTAGCCTCCAAAGACATTA+TGG | - | chr7.1:47823149-47823168 | MS.gene027297:CDS | 45.0% | |
| GGTGGATCTGTTGTAGCTTA+AGG | - | chr7.1:47821741-47821760 | MS.gene027297:intron | 45.0% | |
| GTAACATGATGCTTAAGGCG+TGG | - | chr7.1:47821169-47821188 | MS.gene027297:intron | 45.0% | |
| TCCAGTGTGCCTGAAACAAA+TGG | - | chr7.1:47821865-47821884 | MS.gene027297:intron | 45.0% | |
| TGTCCAAGTTAGGACAGCAA+AGG | - | chr7.1:47822158-47822177 | MS.gene027297:intron | 45.0% | |
| TTCACCAGACCTTCAGTTTC+TGG | + | chr7.1:47821925-47821944 | None:intergenic | 45.0% | |
| TTCCTTGCTCCTCAAGAGAA+AGG | - | chr7.1:47821051-47821070 | MS.gene027297:intron | 45.0% | |
| TTTCCTCTACCACAACGTGA+CGG | + | chr7.1:47822885-47822904 | None:intergenic | 45.0% | |
| TTTGTTTCAGGCACACTGGA+TGG | + | chr7.1:47821865-47821884 | None:intergenic | 45.0% | |
| ! | ACAGACACTTGCCCATTTTC+TGG | + | chr7.1:47821359-47821378 | None:intergenic | 45.0% |
| ! | ATGCACAAGAGTCTTTTGGC+GGG | - | chr7.1:47820956-47820975 | MS.gene027297:intron | 45.0% |
| ! | GATGCACAAGAGTCTTTTGG+CGG | - | chr7.1:47820955-47820974 | MS.gene027297:intron | 45.0% |
| ! | GTGGATGCACAAGAGTCTTT+TGG | - | chr7.1:47820952-47820971 | MS.gene027297:intron | 45.0% |
| ! | TCTGTTCAGGTTATGGCAGA+GGG | - | chr7.1:47823751-47823770 | MS.gene027297:CDS | 45.0% |
| ! | TTCTGTTCAGGTTATGGCAG+AGG | - | chr7.1:47823750-47823769 | MS.gene027297:CDS | 45.0% |
| !! | GTTGTCTTTAAGGCCGTAGA+GGG | - | chr7.1:47822666-47822685 | MS.gene027297:CDS | 45.0% |
| !! | TGTTGTCTTTAAGGCCGTAG+AGG | - | chr7.1:47822665-47822684 | MS.gene027297:CDS | 45.0% |
| AAAGCCCTGAGCATGTGCAT+AGG | - | chr7.1:47820312-47820331 | MS.gene027297:CDS | 50.0% | |
| AAAGGAGCAACATGTGCCTG+TGG | + | chr7.1:47822412-47822431 | None:intergenic | 50.0% | |
| AACGGCTATTGAAGTCTCCG+CGG | + | chr7.1:47823932-47823951 | None:intergenic | 50.0% | |
| ACAGAGAGAGAGAGGACTCA+CGG | + | chr7.1:47820408-47820427 | None:intergenic | 50.0% | |
| AGAAGCAGCTGTCATTACGG+AGG | + | chr7.1:47821791-47821810 | None:intergenic | 50.0% | |
| AGCCTTTCTCTTGAGGAGCA+AGG | + | chr7.1:47821056-47821075 | None:intergenic | 50.0% | |
| AGTCTCCACGGCCAAAACTT+CGG | + | chr7.1:47823848-47823867 | None:intergenic | 50.0% | |
| ATCTACCACTGCTCGTGTTC+CGG | - | chr7.1:47824115-47824134 | MS.gene027297:CDS | 50.0% | |
| ATGGAAGGCCACTCAGTTTC+AGG | - | chr7.1:47823784-47823803 | MS.gene027297:CDS | 50.0% | |
| CAAACCTCCGAACATTGCTC+TGG | - | chr7.1:47820641-47820660 | MS.gene027297:intron | 50.0% | |
| CCACTCAGTTTCAGGGATGA+GGG | - | chr7.1:47823792-47823811 | MS.gene027297:CDS | 50.0% | |
| CGTGGAGACTATAACAGTCG+TGG | - | chr7.1:47823894-47823913 | MS.gene027297:intron | 50.0% | |
| GACCGAGCTTACTGACATCT+TGG | + | chr7.1:47820343-47820362 | None:intergenic | 50.0% | |
| GACTGCTGAGGATGGTGATA+GGG | - | chr7.1:47821313-47821332 | MS.gene027297:intron | 50.0% | |
| GATCAATGACCGTCACGTTG+TGG | - | chr7.1:47822873-47822892 | MS.gene027297:intron | 50.0% | |
| GATCACATGGGAACCAATGG+TGG | - | chr7.1:47824047-47824066 | MS.gene027297:intron | 50.0% | |
| GCAAGTAATTAGGTGGGGTC+TGG | + | chr7.1:47820693-47820712 | None:intergenic | 50.0% | |
| GGAGTCATTGTCTTGGTCAC+TGG | - | chr7.1:47820979-47820998 | MS.gene027297:intron | 50.0% | |
| GGCTACACATGAGGTATGAG+AGG | + | chr7.1:47820462-47820481 | None:intergenic | 50.0% | |
| GTGATGCCGATGATACCATC+TGG | + | chr7.1:47820374-47820393 | None:intergenic | 50.0% | |
| TAGTGCGGAGATCCTATCTG+TGG | - | chr7.1:47820933-47820952 | MS.gene027297:intron | 50.0% | |
| TATAGGAATGGCAATCGGGG+AGG | - | chr7.1:47823987-47824006 | MS.gene027297:intron | 50.0% | |
| TGACTGCTGAGGATGGTGAT+AGG | - | chr7.1:47821312-47821331 | MS.gene027297:intron | 50.0% | |
| TGGAAGGCCACTCAGTTTCA+GGG | - | chr7.1:47823785-47823804 | MS.gene027297:CDS | 50.0% | |
| TTACCATTCTCAGGAGAGGC+AGG | + | chr7.1:47821153-47821172 | None:intergenic | 50.0% | |
| TTTGGCCCTATCAAGAGTGG+CGG | - | chr7.1:47822135-47822154 | MS.gene027297:intron | 50.0% | |
| TTTGGCCGTGGAGACTACAA+TGG | - | chr7.1:47823852-47823871 | MS.gene027297:intron | 50.0% | |
| ! | CCGATGATACCATCTGGTTC+AGG | + | chr7.1:47820368-47820387 | None:intergenic | 50.0% |
| ! | CTTTTCTGTAGCTGGGTGCT+AGG | + | chr7.1:47823429-47823448 | None:intergenic | 50.0% |
| ! | GAGGGCATGGAAACTATGGA+AGG | - | chr7.1:47823769-47823788 | MS.gene027297:CDS | 50.0% |
| ! | GCAAGAGGGCATGGAAACTA+TGG | - | chr7.1:47823816-47823835 | MS.gene027297:CDS | 50.0% |
| ! | GGTTGCCTTTTGACAGCTGA+GGG | - | chr7.1:47822042-47822061 | MS.gene027297:intron | 50.0% |
| ! | TGCACAAGAGTCTTTTGGCG+GGG | - | chr7.1:47820957-47820976 | MS.gene027297:intron | 50.0% |
| ! | TGCTGCTCTAAGTGCAATCG+AGG | - | chr7.1:47822309-47822328 | MS.gene027297:CDS | 50.0% |
| ! | TGGTTGCCTTTTGACAGCTG+AGG | - | chr7.1:47822041-47822060 | MS.gene027297:intron | 50.0% |
| ! | TGTGGGGTTCATTGGTTGCT+TGG | - | chr7.1:47823529-47823548 | MS.gene027297:intron | 50.0% |
| !! | AATAGCCGAAGTTTTGGCCG+TGG | - | chr7.1:47823840-47823859 | MS.gene027297:intron | 50.0% |
| !! | AGAGGAAGCTCCTGTTTCTG+AGG | - | chr7.1:47821385-47821404 | MS.gene027297:intron | 50.0% |
| !! | GGAGGTTTTTCTAGTCGTGG+TGG | - | chr7.1:47824005-47824024 | MS.gene027297:intron | 50.0% |
| !! | TTTTCTAGTCGTGGTGGCGA+TGG | - | chr7.1:47824011-47824030 | MS.gene027297:intron | 50.0% |
| AATGGCCGTGGCGACTACAA+TGG | - | chr7.1:47823870-47823889 | MS.gene027297:intron | 55.0% | |
| ACCCGCCAGTACGATTCATG+CGG | + | chr7.1:47824073-47824092 | None:intergenic | 55.0% | |
| ACGATTCATGCGGCCACCAT+TGG | + | chr7.1:47824063-47824082 | None:intergenic | 55.0% | |
| ACTTGTGTCTCCAGCACAGG+AGG | + | chr7.1:47821275-47821294 | None:intergenic | 55.0% | |
| AGAGTGGCGGTGTCCAAGTT+AGG | - | chr7.1:47822148-47822167 | MS.gene027297:intron | 55.0% | |
| AGGGCATGTGTAGCAGTTCC+AGG | + | chr7.1:47822093-47822112 | None:intergenic | 55.0% | |
| CACGGCCATTGTAGTCTCCA+CGG | + | chr7.1:47823860-47823879 | None:intergenic | 55.0% | |
| CCCTCATCCCTGAAACTGAG+TGG | + | chr7.1:47823795-47823814 | None:intergenic | 55.0% | |
| CGTGGAGACTATAATGGCCG+CGG | - | chr7.1:47823912-47823931 | MS.gene027297:intron | 55.0% | |
| GCAGCTGTCATTACGGAGGA+CGG | + | chr7.1:47821787-47821806 | None:intergenic | 55.0% | |
| GCCACTCAGTTTCAGGGATG+AGG | - | chr7.1:47823791-47823810 | MS.gene027297:CDS | 55.0% | |
| GGAACTTGTGTCTCCAGCAC+AGG | + | chr7.1:47821278-47821297 | None:intergenic | 55.0% | |
| GGACACCGCCACTCTTGATA+GGG | + | chr7.1:47822143-47822162 | None:intergenic | 55.0% | |
| TCAGGCACACTGGATGGTGA+AGG | + | chr7.1:47821859-47821878 | None:intergenic | 55.0% | |
| TCAGGGATGAGGGAGCAAGA+GGG | - | chr7.1:47823802-47823821 | MS.gene027297:CDS | 55.0% | |
| TCAGGTTATGGCAGAGGGCA+TGG | - | chr7.1:47823756-47823775 | MS.gene027297:CDS | 55.0% | |
| TCTCCTGCCTCTCCTGAGAA+TGG | - | chr7.1:47821147-47821166 | MS.gene027297:intron | 55.0% | |
| TGACCGTCACGTTGTGGTAG+AGG | - | chr7.1:47822879-47822898 | MS.gene027297:intron | 55.0% | |
| TGGACACCGCCACTCTTGAT+AGG | + | chr7.1:47822144-47822163 | None:intergenic | 55.0% | |
| TTCAGGGATGAGGGAGCAAG+AGG | - | chr7.1:47823801-47823820 | MS.gene027297:CDS | 55.0% | |
| ! | AGTGTTGGATCCTCCTGTGC+TGG | - | chr7.1:47821262-47821281 | MS.gene027297:intron | 55.0% |
| ! | CATACAACATCAGGTGCCGC+AGG | + | chr7.1:47819985-47820004 | None:intergenic | 55.0% |
| ! | GCACAAGAGTCTTTTGGCGG+GGG | - | chr7.1:47820958-47820977 | MS.gene027297:intron | 55.0% |
| ! | GGCAGAGGGCATGGAAACTA+TGG | - | chr7.1:47823765-47823784 | MS.gene027297:CDS | 55.0% |
| !! | CGGGGAGGTTTTTCTAGTCG+TGG | - | chr7.1:47824002-47824021 | MS.gene027297:intron | 55.0% |
| CACGGCCATTGTAGTCGCCA+CGG | + | chr7.1:47823878-47823897 | None:intergenic | 60.0% | |
| CGTGGAGACTACAATGGCCG+TGG | - | chr7.1:47823858-47823877 | MS.gene027297:intron | 60.0% | |
| CTCGGTCGTCCTGAACCAGA+TGG | - | chr7.1:47820356-47820375 | MS.gene027297:intron | 60.0% | |
| GATGAGGGAGCAAGAGGGCA+TGG | - | chr7.1:47823807-47823826 | MS.gene027297:CDS | 60.0% | |
| GGCCGCATGAATCGTACTGG+CGG | - | chr7.1:47824068-47824087 | MS.gene027297:intron | 60.0% | |
| GGTGGCCGCATGAATCGTAC+TGG | - | chr7.1:47824065-47824084 | MS.gene027297:intron | 60.0% | |
| TGGCGGGGGAGTCATTGTCT+TGG | - | chr7.1:47820972-47820991 | MS.gene027297:intron | 60.0% | |
| ! | GCCGCATGAATCGTACTGGC+GGG | - | chr7.1:47824069-47824088 | MS.gene027297:intron | 60.0% |
| AGAGGCCGGAACACGAGCAG+TGG | + | chr7.1:47824123-47824142 | None:intergenic | 65.0% | |
| CGTGGCGACTACAATGGCCG+TGG | - | chr7.1:47823876-47823895 | MS.gene027297:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 47819958 | 47824148 | 47819958 | ID=MS.gene027297 |
| chr7.1 | mRNA | 47819958 | 47824148 | 47819958 | ID=MS.gene027297.t1;Parent=MS.gene027297 |
| chr7.1 | exon | 47824107 | 47824148 | 47824107 | ID=MS.gene027297.t1.exon1;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47824107 | 47824148 | 47824107 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| chr7.1 | exon | 47823700 | 47823837 | 47823700 | ID=MS.gene027297.t1.exon2;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47823700 | 47823837 | 47823700 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| chr7.1 | exon | 47822938 | 47823214 | 47822938 | ID=MS.gene027297.t1.exon3;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47822938 | 47823214 | 47822938 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| chr7.1 | exon | 47822571 | 47822842 | 47822571 | ID=MS.gene027297.t1.exon4;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47822571 | 47822842 | 47822571 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| chr7.1 | exon | 47822172 | 47822349 | 47822172 | ID=MS.gene027297.t1.exon5;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47822172 | 47822349 | 47822172 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| chr7.1 | exon | 47821927 | 47822048 | 47821927 | ID=MS.gene027297.t1.exon6;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47821927 | 47822048 | 47821927 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| chr7.1 | exon | 47821776 | 47821835 | 47821776 | ID=MS.gene027297.t1.exon7;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47821776 | 47821835 | 47821776 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| chr7.1 | exon | 47821184 | 47821247 | 47821184 | ID=MS.gene027297.t1.exon8;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47821184 | 47821247 | 47821184 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| chr7.1 | exon | 47819958 | 47820346 | 47819958 | ID=MS.gene027297.t1.exon9;Parent=MS.gene027297.t1 |
| chr7.1 | CDS | 47819958 | 47820346 | 47819958 | ID=cds.MS.gene027297.t1;Parent=MS.gene027297.t1 |
| Gene Sequence |
| Protein sequence |
