Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027406.t1 | XP_003605929.1 | 99.3 | 899 | 6 | 0 | 58 | 956 | 59 | 957 | 0.00E+00 | 1811.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027406.t1 | Q9SIB9 | 89.7 | 894 | 92 | 0 | 63 | 956 | 75 | 968 | 0.0e+00 | 1656.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027406.t1 | G7JDJ4 | 99.3 | 899 | 6 | 0 | 58 | 956 | 59 | 957 | 0.0e+00 | 1811.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027406 | MS.gene90508 | PPI |
| MS.gene99212 | MS.gene027406 | PPI |
| MS.gene041065 | MS.gene027406 | PPI |
| MS.gene027406 | MS.gene02695 | PPI |
| MS.gene32746 | MS.gene027406 | PPI |
| MS.gene56790 | MS.gene027406 | PPI |
| MS.gene027406 | MS.gene42646 | PPI |
| MS.gene027406 | MS.gene011805 | PPI |
| MS.gene014952 | MS.gene027406 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027406.t1 | MTR_4g048190 | 98.431 | 956 | 13 | 2 | 2 | 956 | 3 | 957 | 0.0 | 1939 |
| MS.gene027406.t1 | MTR_2g088360 | 89.562 | 958 | 85 | 5 | 10 | 956 | 4 | 957 | 0.0 | 1769 |
| MS.gene027406.t1 | MTR_5g022940 | 85.063 | 877 | 130 | 1 | 81 | 956 | 1 | 877 | 0.0 | 1582 |
| MS.gene027406.t1 | MTR_1g075520 | 77.361 | 879 | 191 | 2 | 78 | 955 | 1 | 872 | 0.0 | 1429 |
| MS.gene027406.t1 | MTR_5g022940 | 85.511 | 773 | 112 | 0 | 184 | 956 | 1 | 773 | 0.0 | 1410 |
| MS.gene027406.t1 | MTR_2g067620 | 83.160 | 576 | 59 | 6 | 135 | 692 | 134 | 689 | 0.0 | 933 |
| MS.gene027406.t1 | MTR_2g067620 | 89.474 | 114 | 12 | 0 | 843 | 956 | 700 | 813 | 1.16e-58 | 217 |
| MS.gene027406.t1 | MTR_4g115490 | 63.889 | 144 | 26 | 2 | 659 | 801 | 154 | 272 | 1.17e-50 | 180 |
| MS.gene027406.t1 | MTR_4g074000 | 43.077 | 130 | 61 | 2 | 781 | 897 | 1 | 130 | 1.02e-22 | 98.2 |
| MS.gene027406.t1 | MTR_1g045750 | 24.688 | 401 | 220 | 13 | 263 | 650 | 166 | 497 | 3.37e-16 | 83.2 |
| MS.gene027406.t1 | MTR_1g073200 | 25.310 | 403 | 233 | 13 | 263 | 650 | 170 | 519 | 8.53e-13 | 72.4 |
| MS.gene027406.t1 | MTR_4g048070 | 43.478 | 92 | 31 | 2 | 841 | 932 | 83 | 153 | 2.99e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027406.t1 | AT2G05710 | 87.554 | 924 | 114 | 1 | 34 | 956 | 45 | 968 | 0.0 | 1699 |
| MS.gene027406.t1 | AT4G26970 | 81.304 | 920 | 171 | 1 | 38 | 956 | 54 | 973 | 0.0 | 1576 |
| MS.gene027406.t1 | AT4G35830 | 84.361 | 876 | 137 | 0 | 81 | 956 | 1 | 876 | 0.0 | 1573 |
| MS.gene027406.t1 | AT4G35830 | 84.347 | 773 | 121 | 0 | 184 | 956 | 1 | 773 | 0.0 | 1392 |
| MS.gene027406.t1 | AT5G54950 | 67.857 | 56 | 18 | 0 | 901 | 956 | 1 | 56 | 2.41e-20 | 86.3 |
| MS.gene027406.t1 | AT4G13430 | 25.901 | 444 | 230 | 15 | 224 | 650 | 140 | 501 | 7.71e-17 | 85.1 |
Find 268 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAACAAAGTTGGGTTTA+AGG | 0.199704 | 4.2:+52626931 | MS.gene027406:CDS |
| GGCTCATGAGCTTGGTTTGC+AGG | 0.204736 | 4.2:+52628309 | MS.gene027406:CDS |
| CGCAAGGACTTCAATTCTTA+TGG | 0.210088 | 4.2:+52630688 | MS.gene027406:CDS |
| TGTCAGAGATACAAGACTTC+TGG | 0.267854 | 4.2:+52631316 | MS.gene027406:intron |
| CTTGTTGTTCCTCCTGGTTC+TGG | 0.274154 | 4.2:+52625550 | MS.gene027406:CDS |
| CGGAAATTATTACCGATTCT+TGG | 0.286253 | 4.2:-52623767 | None:intergenic |
| GCCTGCTCGTGTTCTCTTGC+AGG | 0.292575 | 4.2:+52624695 | MS.gene027406:CDS |
| GGAGAAGAAAAGAGTTTGTT+AGG | 0.294843 | 4.2:-52623315 | None:intergenic |
| GTTGTTGCTTATGCTCTTGC+TGG | 0.298076 | 4.2:+52629039 | MS.gene027406:CDS |
| AAATGCAGTGCAGGCTAATA+TGG | 0.299347 | 4.2:+52625456 | MS.gene027406:CDS |
| GTTGGAATGTGAACTGTCTT+AGG | 0.299694 | 4.2:-52630799 | None:intergenic |
| GTAGCAGCTGCTGTGTTGTC+TGG | 0.301206 | 4.2:+52628949 | MS.gene027406:CDS |
| ACAACATGTATTGGCAATTC+AGG | 0.302030 | 4.2:+52628718 | MS.gene027406:CDS |
| AAGCCAGGTGGTGGCGAGTT+TGG | 0.306384 | 4.2:+52623713 | MS.gene027406:CDS |
| CAGGTCAATCTTGAATATCT+TGG | 0.311696 | 4.2:+52625683 | MS.gene027406:intron |
| GCTAATATGTCTCCTGAATA+TGG | 0.311847 | 4.2:+52626346 | MS.gene027406:CDS |
| CATATCAGCCGCAACAAGAT+AGG | 0.312149 | 4.2:+52626678 | MS.gene027406:intron |
| TGCTGTCACCAAAGTTTAAC+AGG | 0.312741 | 4.2:-52630582 | None:intergenic |
| GAATAGGAACCTTACCTCTT+TGG | 0.312837 | 4.2:-52626758 | None:intergenic |
| AGAAAAGAAGGTTCTAGAAA+TGG | 0.316053 | 4.2:-52623337 | None:intergenic |
| CCCATGGTGGCACCATATTC+AGG | 0.318308 | 4.2:-52626358 | None:intergenic |
| GAAAAGAAGGTTCTAGAAAT+GGG | 0.320566 | 4.2:-52623336 | None:intergenic |
| ATAGATGGGCTTGGTGTTGC+TGG | 0.324737 | 4.2:+52625779 | MS.gene027406:CDS |
| ATGTCTACCTCAGGGATATC+TGG | 0.325499 | 4.2:+52630227 | MS.gene027406:CDS |
| GCTTCTGCCATCTCAGAAAA+TGG | 0.328847 | 4.2:+52628760 | MS.gene027406:CDS |
| CAAATCTCTCCTTGTTTCTC+TGG | 0.328941 | 4.2:-52625489 | None:intergenic |
| CAGTTGTGACTTTGACATCT+TGG | 0.330697 | 4.2:-52631720 | None:intergenic |
| TTACAATATCTCAAGCTAAC+TGG | 0.332615 | 4.2:+52626406 | MS.gene027406:CDS |
| TCACATACAACTATGATAGA+TGG | 0.333043 | 4.2:+52625764 | MS.gene027406:CDS |
| GGCTGGTCTTGTAGCGAAAA+AGG | 0.338637 | 4.2:+52628288 | MS.gene027406:CDS |
| GTTGTTGGGTTCAAGCTATC+TGG | 0.346551 | 4.2:+52626070 | MS.gene027406:CDS |
| CTTGTTAACAAGCTCTTAAA+CGG | 0.349560 | 4.2:+52630766 | MS.gene027406:CDS |
| AGAAAAGAGTTTGTTAGGTT+TGG | 0.352405 | 4.2:-52623310 | None:intergenic |
| CCATCCTTCCCCGTTCCAAT+TGG | 0.353546 | 4.2:-52630199 | None:intergenic |
| GGTGTTGCTGGATGGGGTGT+TGG | 0.360360 | 4.2:+52625791 | MS.gene027406:CDS |
| TGGGCTTGGTGTTGCTGGAT+GGG | 0.362103 | 4.2:+52625784 | MS.gene027406:CDS |
| AGTATGGCAGTGGAAGTTCT+AGG | 0.365798 | 4.2:+52631368 | MS.gene027406:CDS |
| CTAGAAGTGCGGGAAGATAT+AGG | 0.372050 | 4.2:-52623363 | None:intergenic |
| CTTAGAAAGCACGGTGTTGT+AGG | 0.374489 | 4.2:+52626148 | MS.gene027406:CDS |
| TCTGCAATTTCTTCAGTAGA+TGG | 0.385681 | 4.2:-52630250 | None:intergenic |
| TGCCAAGGGTCCAATGTTAT+TGG | 0.387232 | 4.2:+52631399 | MS.gene027406:CDS |
| GTCAGAGATACAAGACTTCT+GGG | 0.387249 | 4.2:+52631317 | MS.gene027406:intron |
| AACATGCTTGTTGTTCCTCC+TGG | 0.388255 | 4.2:+52625544 | MS.gene027406:CDS |
| GAGAAGGAGCCAATTGGAAC+GGG | 0.392945 | 4.2:+52630190 | MS.gene027406:CDS |
| CAGCTGATACTCTCTACTCT+TGG | 0.393908 | 4.2:+52630467 | MS.gene027406:CDS |
| AGGAGAATTCTAATCGAGTA+TGG | 0.397433 | 4.2:-52624564 | None:intergenic |
| CGCAGTAACTTGGTGGGAAT+GGG | 0.405387 | 4.2:+52631586 | MS.gene027406:CDS |
| CAATTCTTATGGAAGTCGTC+GGG | 0.408766 | 4.2:+52630699 | MS.gene027406:CDS |
| ACAAGTCTTGCTCCAGGCTC+TGG | 0.409104 | 4.2:+52628492 | MS.gene027406:CDS |
| TTGTTAACAAGCTCTTAAAC+GGG | 0.410798 | 4.2:+52630767 | MS.gene027406:CDS |
| TGTCCCAGCTGTCGTGGACT+TGG | 0.414264 | 4.2:+52624832 | MS.gene027406:CDS |
| GTGCTGGCTGGAGCTGAGTA+TGG | 0.414766 | 4.2:+52631352 | MS.gene027406:CDS |
| CTTTCAAAGGCACACGGTCG+TGG | 0.415053 | 4.2:-52626880 | None:intergenic |
| CTTGTCAAGTTTCCCTTGAA+AGG | 0.419364 | 4.2:-52623683 | None:intergenic |
| ATGGGCTTGGTGTTGCTGGA+TGG | 0.419549 | 4.2:+52625783 | MS.gene027406:CDS |
| TCGCAGTAACTTGGTGGGAA+TGG | 0.420813 | 4.2:+52631585 | MS.gene027406:CDS |
| CAAACCCAAGTGTTATGCTT+GGG | 0.423891 | 4.2:+52628266 | MS.gene027406:CDS |
| CTCTATCCTGACAGTGTGGT+TGG | 0.425659 | 4.2:+52625734 | MS.gene027406:CDS |
| CAAGCCAAGTCCACGACAGC+TGG | 0.426365 | 4.2:-52624836 | None:intergenic |
| CTCTTTGGTCCTGAGATACA+TGG | 0.434528 | 4.2:-52626743 | None:intergenic |
| TGGTCAACGACGAGATCAAC+AGG | 0.435639 | 4.2:-52625403 | None:intergenic |
| CAGTGGAAGTTCTAGGGATT+GGG | 0.436396 | 4.2:+52631375 | MS.gene027406:CDS |
| GGGCTTGGTGTTGCTGGATG+GGG | 0.436432 | 4.2:+52625785 | MS.gene027406:CDS |
| GTTGCTGGATGGGGTGTTGG+AGG | 0.436620 | 4.2:+52625794 | MS.gene027406:CDS |
| CTGCCATGCTTGAGTTCTGC+TGG | 0.439102 | 4.2:-52628205 | None:intergenic |
| CGGTGGAAGCGTTCGACGAC+GGG | 0.441723 | 4.2:-52623477 | None:intergenic |
| ATGGTCATGTTCTTGAAGTA+TGG | 0.442787 | 4.2:-52630520 | None:intergenic |
| AATTACGAATGGCGGATTCA+AGG | 0.443905 | 4.2:-52624584 | None:intergenic |
| GCAGTGGAAGTTCTAGGGAT+TGG | 0.445972 | 4.2:+52631374 | MS.gene027406:CDS |
| AGCTGATACTCTCTACTCTT+GGG | 0.446059 | 4.2:+52630468 | MS.gene027406:CDS |
| GACTTTGAGAAGGAGCCAAT+TGG | 0.446271 | 4.2:+52630184 | MS.gene027406:CDS |
| TGGTTCTGGTATAGTACATC+AGG | 0.450673 | 4.2:+52625564 | MS.gene027406:CDS |
| GCGTGTCTTGATAACAAAGT+TGG | 0.450840 | 4.2:+52626923 | MS.gene027406:CDS |
| GTCAAAGTCACAACTGATAG+TGG | 0.454012 | 4.2:+52631727 | MS.gene027406:CDS |
| TTCTAGGGATTGGGCTGCCA+AGG | 0.455881 | 4.2:+52631384 | MS.gene027406:CDS |
| TCTATCCTGACAGTGTGGTT+GGG | 0.455891 | 4.2:+52625735 | MS.gene027406:CDS |
| ATCCCTCTTTGCTACAAACC+TGG | 0.456472 | 4.2:+52631613 | MS.gene027406:CDS |
| GAACATGACCATGGATCCTC+CGG | 0.457546 | 4.2:+52630531 | MS.gene027406:CDS |
| CGTGTCTTGATAACAAAGTT+GGG | 0.457661 | 4.2:+52626924 | MS.gene027406:CDS |
| TTCAAATAAAATCAATCCTC+TGG | 0.461087 | 4.2:+52624892 | MS.gene027406:CDS |
| TGCTTATGCTCTTGCTGGCA+CGG | 0.461402 | 4.2:+52629044 | MS.gene027406:CDS |
| CCAGGCAAAACCATGCTCAT+AGG | 0.461883 | 4.2:-52626046 | None:intergenic |
| AGCGAGTGAAAATCCTTTCA+AGG | 0.462520 | 4.2:+52623670 | MS.gene027406:intron |
| ATGGCAAGAATGTCTACCTC+AGG | 0.470291 | 4.2:+52630218 | MS.gene027406:CDS |
| CAAGACACCATTGTGCTGGC+TGG | 0.470520 | 4.2:+52631340 | MS.gene027406:CDS |
| GGTGTCAAAGCGTGCTATGC+AGG | 0.471292 | 4.2:-52631761 | None:intergenic |
| CCTGAATATGGTGCCACCAT+GGG | 0.471961 | 4.2:+52626358 | MS.gene027406:CDS |
| CGATGATAGAGTCTTATCTC+AGG | 0.472591 | 4.2:+52626532 | MS.gene027406:CDS |
| CGTTTAAGAGCTTGTTAACA+AGG | 0.476089 | 4.2:-52630765 | None:intergenic |
| CAACATGTATTGGCAATTCA+GGG | 0.476725 | 4.2:+52628719 | MS.gene027406:CDS |
| CACCAATAACATTGGACCCT+TGG | 0.477440 | 4.2:-52631401 | None:intergenic |
| GTTGTTCTGAGAAGAGAAGA+AGG | 0.478242 | 4.2:-52623288 | None:intergenic |
| TCAGTCCCAACCACACTGTC+AGG | 0.479411 | 4.2:-52625740 | None:intergenic |
| TTTCAAAGGCACACGGTCGT+GGG | 0.479496 | 4.2:-52626879 | None:intergenic |
| ACCGATCATATTTCTCCAGC+TGG | 0.481229 | 4.2:+52630610 | MS.gene027406:CDS |
| AGATATAGGAGAAGAAAAGA+AGG | 0.484291 | 4.2:-52623349 | None:intergenic |
| GAAATGACGAGGTGATGGCG+AGG | 0.485734 | 4.2:+52630722 | MS.gene027406:CDS |
| TGAGGCAGCAATGCTCGGTC+AGG | 0.487131 | 4.2:+52625826 | MS.gene027406:CDS |
| GAACCCGGCCCTCAAAATTA+CGG | 0.487495 | 4.2:-52628975 | None:intergenic |
| CTTGCAGTTTGTTCCACATA+GGG | 0.488178 | 4.2:-52630441 | None:intergenic |
| TTTGGCTGTACAACATGTAT+TGG | 0.492336 | 4.2:+52628709 | MS.gene027406:CDS |
| GCCTATTGCCTGTTAAACTT+TGG | 0.492430 | 4.2:+52630574 | MS.gene027406:CDS |
| CGAGATGCTATGAATAAGCT+TGG | 0.492877 | 4.2:+52624863 | MS.gene027406:CDS |
| GAGAATTCATCGCAGTAACT+TGG | 0.493503 | 4.2:+52631576 | MS.gene027406:CDS |
| AGAACACGAGCAGGCTTGAA+AGG | 0.493805 | 4.2:-52624687 | None:intergenic |
| TATGTACTTCGGAACATGTC+AGG | 0.493929 | 4.2:-52630397 | None:intergenic |
| GTGACTTTGACATCTTGGCC+AGG | 0.494276 | 4.2:-52631715 | None:intergenic |
| TCCCTCTTTGCTACAAACCT+GGG | 0.494799 | 4.2:+52631614 | MS.gene027406:CDS |
| AATGTGTCTGCATCCTCCCC+AGG | 0.496499 | 4.2:-52631631 | None:intergenic |
| TGCTATACCAAAAGAGGCAC+AGG | 0.497558 | 4.2:+52628150 | MS.gene027406:CDS |
| ACCAAAGTTTAACAGGCAAT+AGG | 0.498703 | 4.2:-52630575 | None:intergenic |
| TGTAATGTAACGTGATCCAC+AGG | 0.499453 | 4.2:-52626388 | None:intergenic |
| GCAGACACATTGGGATTGAC+TGG | 0.499598 | 4.2:+52631643 | MS.gene027406:CDS |
| TTCATGAATATATGTTGAGT+TGG | 0.502717 | 4.2:-52630494 | None:intergenic |
| TAGCAGCTGCTGTGTTGTCT+GGG | 0.503023 | 4.2:+52628950 | MS.gene027406:CDS |
| TCAGCCTTCATTTCTTTCAA+AGG | 0.504379 | 4.2:-52626893 | None:intergenic |
| TGAAAGAAATGAAGGCTGAC+TGG | 0.505538 | 4.2:+52626897 | MS.gene027406:CDS |
| TACAATATCTCAAGCTAACT+GGG | 0.505582 | 4.2:+52626407 | MS.gene027406:CDS |
| GAAGAAGGATCTAGAAGTGC+GGG | 0.507955 | 4.2:-52623373 | None:intergenic |
| GGGGAGGATGCAGACACATT+GGG | 0.508251 | 4.2:+52631634 | MS.gene027406:CDS |
| CCAAGTGTTATGCTTGGGGC+TGG | 0.508975 | 4.2:+52628271 | MS.gene027406:CDS |
| AGGAAGGGAAGAAGAGAAGA+AGG | 0.509205 | 4.2:-52623388 | None:intergenic |
| ATGTTGAGAAGATTATTGAC+TGG | 0.511410 | 4.2:+52624634 | MS.gene027406:CDS |
| ATGGATCCTCCGGGATCTCA+TGG | 0.511899 | 4.2:+52630541 | MS.gene027406:CDS |
| AGCTTGAACCCAACAACTCC+AGG | 0.512315 | 4.2:-52626064 | None:intergenic |
| CCAATTGGAACGGGGAAGGA+TGG | 0.512474 | 4.2:+52630199 | MS.gene027406:CDS |
| TGGGCAAGACACCATTGTGC+TGG | 0.512533 | 4.2:+52631336 | MS.gene027406:CDS |
| AAGCTCTTAAACGGGGAAGT+TGG | 0.512658 | 4.2:+52630775 | MS.gene027406:CDS |
| CTTGTTAACAAGGCGAATGT+TGG | 0.512774 | 4.2:-52630755 | None:intergenic |
| TTAGTAACAACTCCAGAGCC+TGG | 0.513461 | 4.2:-52628504 | None:intergenic |
| TTGGAATGTGAACTGTCTTA+GGG | 0.513630 | 4.2:-52630798 | None:intergenic |
| CAGTTCAAGTTGACGTGGCA+AGG | 0.514019 | 4.2:+52625428 | MS.gene027406:CDS |
| AAAATCAGTGAGATCAAGCC+TGG | 0.514843 | 4.2:+52631697 | MS.gene027406:CDS |
| CCACGTCAACTTGAACTGAA+TGG | 0.515185 | 4.2:-52625423 | None:intergenic |
| AAGACAGTTCACATTCCAAC+TGG | 0.516144 | 4.2:+52630802 | MS.gene027406:CDS |
| AAATGACGAGGTGATGGCGA+GGG | 0.517899 | 4.2:+52630723 | MS.gene027406:CDS |
| TTTCCAAACTCGCCACCACC+TGG | 0.520805 | 4.2:-52623716 | None:intergenic |
| TTAGAAAGCACGGTGTTGTA+GGG | 0.521114 | 4.2:+52626149 | MS.gene027406:CDS |
| TCTCTGAATGATCCAAGAAT+CGG | 0.524068 | 4.2:+52623755 | MS.gene027406:CDS |
| TCCTGAATATGGTGCCACCA+TGG | 0.525236 | 4.2:+52626357 | MS.gene027406:CDS |
| TCCTTGTTAATGCTTCCAGC+TGG | 0.525882 | 4.2:-52630625 | None:intergenic |
| CACCGCAAAATTTCCACCAT+GGG | 0.526633 | 4.2:+52623495 | MS.gene027406:CDS |
| ATGCTTGCAGCCTATGAGCA+TGG | 0.526901 | 4.2:+52626036 | MS.gene027406:intron |
| GTTCAACCCCACGCTCTAGT+AGG | 0.527414 | 4.2:-52630666 | None:intergenic |
| AAGGTCAGAAAATGCAGTGC+AGG | 0.529335 | 4.2:+52625447 | MS.gene027406:CDS |
| CACATACAACTATGATAGAT+GGG | 0.529419 | 4.2:+52625765 | MS.gene027406:CDS |
| GACGTAGAACCATGTATCTC+AGG | 0.529558 | 4.2:+52626734 | MS.gene027406:CDS |
| TGTTGAGAAGATTATTGACT+GGG | 0.531470 | 4.2:+52624635 | MS.gene027406:CDS |
| AACTCGCCACCACCTGGCTT+AGG | 0.533405 | 4.2:-52623710 | None:intergenic |
| TACATGGTTCTACGTCGGAC+AGG | 0.533933 | 4.2:-52626727 | None:intergenic |
| TCTAGTAGGTATTTAGCAGC+AGG | 0.535650 | 4.2:-52630652 | None:intergenic |
| TCAAACCCAAGTGTTATGCT+TGG | 0.536303 | 4.2:+52628265 | MS.gene027406:CDS |
| ACATAAAGCTTCTCACCAGT+TGG | 0.537679 | 4.2:-52630817 | None:intergenic |
| GGGATTTGCTATACCAAAAG+AGG | 0.538491 | 4.2:+52628144 | MS.gene027406:intron |
| AAATCTGCAGAATGGTGTTA+CGG | 0.539268 | 4.2:+52626093 | MS.gene027406:CDS |
| TCTGTTTGTTGACTATAATG+AGG | 0.539417 | 4.2:+52626563 | MS.gene027406:CDS |
| ATGAGATCCCGGAGGATCCA+TGG | 0.539721 | 4.2:-52630539 | None:intergenic |
| CCCCAGGTTTGTAGCAAAGA+GGG | 0.541656 | 4.2:-52631615 | None:intergenic |
| GAGGAACAACAAGCATGTTA+CGG | 0.543288 | 4.2:-52625540 | None:intergenic |
| ATATCAGCCGCAACAAGATA+GGG | 0.543408 | 4.2:+52626679 | MS.gene027406:intron |
| GAAGCTGAGGCAGCAATGCT+CGG | 0.545462 | 4.2:+52625821 | MS.gene027406:CDS |
| ACATATGAGTCTATCACAAA+GGG | 0.548128 | 4.2:+52630415 | MS.gene027406:CDS |
| TCAATTCTTATGGAAGTCGT+CGG | 0.548175 | 4.2:+52630698 | MS.gene027406:CDS |
| TGGGGAGGATGCAGACACAT+TGG | 0.548419 | 4.2:+52631633 | MS.gene027406:CDS |
| TCACAAAGGGTAACCCTATG+TGG | 0.548614 | 4.2:+52630428 | MS.gene027406:CDS |
| GCGTTCGACGACGGGAGCAA+CGG | 0.549421 | 4.2:-52623469 | None:intergenic |
| CCATTCAGTTCAAGTTGACG+TGG | 0.549622 | 4.2:+52625423 | MS.gene027406:CDS |
| CAAGAGTAGAGAGTATCAGC+TGG | 0.551741 | 4.2:-52630466 | None:intergenic |
| CTAAATACCTACTAGAGCGT+GGG | 0.552519 | 4.2:+52630659 | MS.gene027406:CDS |
| AGCGGCGGTTGAAGCGAGGA+AGG | 0.552978 | 4.2:-52623404 | None:intergenic |
| AAAATTATCGCAATTACGAA+TGG | 0.553355 | 4.2:-52624595 | None:intergenic |
| AATTCATCGCAGTAACTTGG+TGG | 0.555174 | 4.2:+52631579 | MS.gene027406:CDS |
| TCGGGGAAATGACGAGGTGA+TGG | 0.555657 | 4.2:+52630717 | MS.gene027406:CDS |
| CCAGCCCCAAGCATAACACT+TGG | 0.556722 | 4.2:-52628271 | None:intergenic |
| TACTGGTGTCCCAGCTGTCG+TGG | 0.556922 | 4.2:+52624826 | MS.gene027406:CDS |
| GCTGGAGCTGAGTATGGCAG+TGG | 0.557103 | 4.2:+52631358 | MS.gene027406:CDS |
| TAGAAGCGGCGGTTGAAGCG+AGG | 0.561141 | 4.2:-52623408 | None:intergenic |
| CAATCTTGAATATCTTGGAC+GGG | 0.562003 | 4.2:+52625688 | MS.gene027406:CDS |
| GTTAAAACAAGTCTTGCTCC+AGG | 0.564245 | 4.2:+52628486 | MS.gene027406:CDS |
| AGAGCGTGGGGTTGAACGCA+AGG | 0.564248 | 4.2:+52630672 | MS.gene027406:CDS |
| TGAGAAGGAGCCAATTGGAA+CGG | 0.564434 | 4.2:+52630189 | MS.gene027406:CDS |
| AAGGAACTCACCAATAACAT+TGG | 0.567124 | 4.2:-52631409 | None:intergenic |
| AATGACGAGGTGATGGCGAG+GGG | 0.568594 | 4.2:+52630724 | MS.gene027406:CDS |
| TCTTTCACACCATGAGATCC+CGG | 0.571329 | 4.2:-52630550 | None:intergenic |
| GCGGTGGAAGCGTTCGACGA+CGG | 0.574164 | 4.2:-52623478 | None:intergenic |
| ACCTGCAAGAGAACACGAGC+AGG | 0.577460 | 4.2:-52624696 | None:intergenic |
| GGAGCCAATTGGAACGGGGA+AGG | 0.577897 | 4.2:+52630195 | MS.gene027406:CDS |
| ACTTGCAGTTTGTTCCACAT+AGG | 0.578259 | 4.2:-52630442 | None:intergenic |
| GCTAAATACCTACTAGAGCG+TGG | 0.578813 | 4.2:+52630658 | MS.gene027406:CDS |
| GGTTGACATTGACTTTGAGA+AGG | 0.579703 | 4.2:+52630174 | MS.gene027406:intron |
| TTGACAAGTCTTCCTAAGCC+AGG | 0.581866 | 4.2:+52623698 | MS.gene027406:CDS |
| GTATGGCAGTGGAAGTTCTA+GGG | 0.582014 | 4.2:+52631369 | MS.gene027406:CDS |
| TGATAGACTCATATGTACTT+CGG | 0.582019 | 4.2:-52630408 | None:intergenic |
| CACCATGGGCTTCTTCCCTG+TGG | 0.582342 | 4.2:+52626372 | MS.gene027406:CDS |
| AGAAGGTGTATTTATATACA+TGG | 0.583530 | 4.2:-52623271 | None:intergenic |
| TCAATCTTGAATATCTTGGA+CGG | 0.584359 | 4.2:+52625687 | MS.gene027406:CDS |
| ATTCTTGGATCATTCAGAGA+AGG | 0.587366 | 4.2:-52623752 | None:intergenic |
| GAATATGCCCTATCTTGTTG+CGG | 0.591911 | 4.2:-52626686 | None:intergenic |
| GGAGCAACGGCGGTGATCTG+AGG | 0.594365 | 4.2:-52623456 | None:intergenic |
| TTCAAAGGCACACGGTCGTG+GGG | 0.597454 | 4.2:-52626878 | None:intergenic |
| AGTCTTCCTAAGCCAGGTGG+TGG | 0.597546 | 4.2:+52623704 | MS.gene027406:CDS |
| GTCATGTTCTTGAAGTATGG+AGG | 0.597918 | 4.2:-52630517 | None:intergenic |
| ATTATCGCAATTACGAATGG+CGG | 0.598102 | 4.2:-52624592 | None:intergenic |
| GCGAGTGAAAATCCTTTCAA+GGG | 0.600264 | 4.2:+52623671 | MS.gene027406:intron |
| AAGATAGTTAGCTCTTGTCA+AGG | 0.602141 | 4.2:-52629001 | None:intergenic |
| CAAAAGTATCTAAATGAACA+AGG | 0.602869 | 4.2:+52628670 | MS.gene027406:CDS |
| ACAACTATGATAGATGGGCT+TGG | 0.605199 | 4.2:+52625770 | MS.gene027406:CDS |
| TCTAGGGATTGGGCTGCCAA+GGG | 0.607673 | 4.2:+52631385 | MS.gene027406:CDS |
| GCGGCGGTTGAAGCGAGGAA+GGG | 0.609567 | 4.2:-52623403 | None:intergenic |
| AAGCCAAGTCCACGACAGCT+GGG | 0.610945 | 4.2:-52624835 | None:intergenic |
| AGCAACAACTAGAGGAGGTG+AGG | 0.613592 | 4.2:-52629025 | None:intergenic |
| TGTGCCTTTGAAAGAAATGA+AGG | 0.613775 | 4.2:+52626889 | MS.gene027406:CDS |
| CCCTCTTTGCTACAAACCTG+GGG | 0.615039 | 4.2:+52631615 | MS.gene027406:CDS |
| AAACCCAAGTGTTATGCTTG+GGG | 0.616138 | 4.2:+52628267 | MS.gene027406:CDS |
| TACATATGAGTCTATCACAA+AGG | 0.616248 | 4.2:+52630414 | MS.gene027406:CDS |
| AGAGCATAAGCAACAACTAG+AGG | 0.617785 | 4.2:-52629033 | None:intergenic |
| GAGAGGAAGAATAGAAGCGG+CGG | 0.618354 | 4.2:-52623419 | None:intergenic |
| CTATCTGGAAATCTGCAGAA+TGG | 0.624123 | 4.2:+52626085 | MS.gene027406:CDS |
| TTCGACGACGGGAGCAACGG+CGG | 0.624857 | 4.2:-52623466 | None:intergenic |
| AGATAGTTAGCTCTTGTCAA+GGG | 0.626760 | 4.2:-52629000 | None:intergenic |
| CCACCGCAAAATTTCCACCA+TGG | 0.627351 | 4.2:+52623494 | MS.gene027406:CDS |
| GCATAAGCAACAACTAGAGG+AGG | 0.628223 | 4.2:-52629030 | None:intergenic |
| TCATTTCTTTCAAAGGCACA+CGG | 0.629426 | 4.2:-52626886 | None:intergenic |
| TCCCCAGGTTTGTAGCAAAG+AGG | 0.630250 | 4.2:-52631616 | None:intergenic |
| ATTCATCGCAGTAACTTGGT+GGG | 0.630334 | 4.2:+52631580 | MS.gene027406:CDS |
| TTATGTGTTCGATGCAGCAA+TGG | 0.631224 | 4.2:+52630834 | MS.gene027406:CDS |
| CTTTCTAAGAATCTGTGTCA+CGG | 0.632458 | 4.2:-52626134 | None:intergenic |
| ACTTGAATTCCAGAGAAACA+AGG | 0.633891 | 4.2:+52625480 | MS.gene027406:CDS |
| TCCAGCTGGAAGCATTAACA+AGG | 0.635278 | 4.2:+52630624 | MS.gene027406:CDS |
| TCCAGCTGGAGAAATATGAT+CGG | 0.639805 | 4.2:-52630611 | None:intergenic |
| TGGCAAGAATGTCTACCTCA+GGG | 0.641425 | 4.2:+52630219 | MS.gene027406:CDS |
| TCTTTGCTACAAACCTGGGG+AGG | 0.642538 | 4.2:+52631618 | MS.gene027406:CDS |
| ACACAGATTCTTAGAAAGCA+CGG | 0.643034 | 4.2:+52626139 | MS.gene027406:CDS |
| TGTTGGAGGTATCGAAGCTG+AGG | 0.643188 | 4.2:+52625808 | MS.gene027406:CDS |
| ATGACGAGGTGATGGCGAGG+GGG | 0.643488 | 4.2:+52630725 | MS.gene027406:CDS |
| GATGATAGAGTCTTATCTCA+GGG | 0.643636 | 4.2:+52626533 | MS.gene027406:CDS |
| CATGTATCTCAGGACCAAAG+AGG | 0.644393 | 4.2:+52626744 | MS.gene027406:CDS |
| AGCTGGAGAAATATGATCGG+TGG | 0.644456 | 4.2:-52630608 | None:intergenic |
| CAACGGCGGTGATCTGAGGA+CGG | 0.644927 | 4.2:-52623452 | None:intergenic |
| CAACCAGCAGAACTCAAGCA+TGG | 0.649281 | 4.2:+52628202 | MS.gene027406:CDS |
| AACATGACCATGGATCCTCC+GGG | 0.649388 | 4.2:+52630532 | MS.gene027406:CDS |
| ATCCACAGGGAAGAAGCCCA+TGG | 0.649532 | 4.2:-52626374 | None:intergenic |
| CAGCCCCAAGCATAACACTT+GGG | 0.651191 | 4.2:-52628270 | None:intergenic |
| CTCAGCTCCAGCCAGCACAA+TGG | 0.654348 | 4.2:-52631347 | None:intergenic |
| ATCTACTGAAGAAATTGCAG+AGG | 0.657410 | 4.2:+52630252 | MS.gene027406:CDS |
| GATGAGAGGAAGAATAGAAG+CGG | 0.660414 | 4.2:-52623422 | None:intergenic |
| TGATGTACTATACCAGAACC+AGG | 0.661607 | 4.2:-52625562 | None:intergenic |
| AACATGTATTGGCAATTCAG+GGG | 0.662698 | 4.2:+52628720 | MS.gene027406:CDS |
| AGAAGAAGGATCTAGAAGTG+CGG | 0.664717 | 4.2:-52623374 | None:intergenic |
| ATACTTCAAGAACATGACCA+TGG | 0.667430 | 4.2:+52630522 | MS.gene027406:CDS |
| AGAAGGAGCCAATTGGAACG+GGG | 0.669879 | 4.2:+52630191 | MS.gene027406:CDS |
| AAGTCGTCGGGGAAATGACG+AGG | 0.672312 | 4.2:+52630711 | MS.gene027406:CDS |
| CTCTTGTCAAGGGATGAACC+CGG | 0.673673 | 4.2:-52628990 | None:intergenic |
| AATTCTTATGGAAGTCGTCG+GGG | 0.678191 | 4.2:+52630700 | MS.gene027406:CDS |
| AGGACGGAGAGAGAGATGAG+AGG | 0.679131 | 4.2:-52623436 | None:intergenic |
| TTACTAAATATCTACTCCAG+AGG | 0.681676 | 4.2:+52628520 | MS.gene027406:CDS |
| CTTACTCTATCCTGACAGTG+TGG | 0.682246 | 4.2:+52625730 | MS.gene027406:CDS |
| ACGTAGTAACGTACCCATGG+TGG | 0.688171 | 4.2:-52623508 | None:intergenic |
| CATAGCACGCTTTGACACCG+AGG | 0.696443 | 4.2:+52631765 | MS.gene027406:CDS |
| TGTTAACAAGCTCTTAAACG+GGG | 0.704394 | 4.2:+52630768 | MS.gene027406:CDS |
| TAAATACCTACTAGAGCGTG+GGG | 0.714753 | 4.2:+52630660 | MS.gene027406:CDS |
| CACAGGGAAGAAGCCCATGG+TGG | 0.716978 | 4.2:-52626371 | None:intergenic |
| ACAAGTCTTCCTAAGCCAGG+TGG | 0.720220 | 4.2:+52623701 | MS.gene027406:CDS |
| TGAGATACATGGTTCTACGT+CGG | 0.727878 | 4.2:-52626732 | None:intergenic |
| GTAATGTAACGTGATCCACA+GGG | 0.728319 | 4.2:-52626387 | None:intergenic |
| TTCACACCATGAGATCCCGG+AGG | 0.770164 | 4.2:-52630547 | None:intergenic |
| TGTACTATACCAGAACCAGG+AGG | 0.789089 | 4.2:-52625559 | None:intergenic |
| TAGATGGCCAGATATCCCTG+AGG | 0.811800 | 4.2:-52630234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 52623273 | 52631786 | 52623273 | ID=MS.gene027406 |
| chr4.2 | mRNA | 52623273 | 52631786 | 52623273 | ID=MS.gene027406.t1;Parent=MS.gene027406 |
| chr4.2 | exon | 52623273 | 52623516 | 52623273 | ID=MS.gene027406.t1.exon1;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52623273 | 52623516 | 52623273 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52623672 | 52623776 | 52623672 | ID=MS.gene027406.t1.exon2;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52623672 | 52623776 | 52623672 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52624556 | 52624716 | 52624556 | ID=MS.gene027406.t1.exon3;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52624556 | 52624716 | 52624556 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52624821 | 52624913 | 52624821 | ID=MS.gene027406.t1.exon4;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52624821 | 52624913 | 52624821 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52625400 | 52625585 | 52625400 | ID=MS.gene027406.t1.exon5;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52625400 | 52625585 | 52625400 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52625686 | 52625847 | 52625686 | ID=MS.gene027406.t1.exon6;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52625686 | 52625847 | 52625686 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52626046 | 52626190 | 52626046 | ID=MS.gene027406.t1.exon7;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52626046 | 52626190 | 52626046 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52626302 | 52626444 | 52626302 | ID=MS.gene027406.t1.exon8;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52626302 | 52626444 | 52626302 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52626528 | 52626584 | 52626528 | ID=MS.gene027406.t1.exon9;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52626528 | 52626584 | 52626528 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52626686 | 52626765 | 52626686 | ID=MS.gene027406.t1.exon10;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52626686 | 52626765 | 52626686 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52626877 | 52626952 | 52626877 | ID=MS.gene027406.t1.exon11;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52626877 | 52626952 | 52626877 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52628145 | 52628330 | 52628145 | ID=MS.gene027406.t1.exon12;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52628145 | 52628330 | 52628145 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52628474 | 52628541 | 52628474 | ID=MS.gene027406.t1.exon13;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52628474 | 52628541 | 52628474 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52628663 | 52628781 | 52628663 | ID=MS.gene027406.t1.exon14;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52628663 | 52628781 | 52628663 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52628944 | 52629065 | 52628944 | ID=MS.gene027406.t1.exon15;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52628944 | 52629065 | 52628944 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52630175 | 52630273 | 52630175 | ID=MS.gene027406.t1.exon16;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52630175 | 52630273 | 52630175 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52630376 | 52630855 | 52630376 | ID=MS.gene027406.t1.exon17;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52630376 | 52630855 | 52630376 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52631322 | 52631420 | 52631322 | ID=MS.gene027406.t1.exon18;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52631322 | 52631420 | 52631322 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| chr4.2 | exon | 52631544 | 52631786 | 52631544 | ID=MS.gene027406.t1.exon19;Parent=MS.gene027406.t1 |
| chr4.2 | CDS | 52631544 | 52631786 | 52631544 | ID=cds.MS.gene027406.t1;Parent=MS.gene027406.t1 |
| Gene Sequence |
| Protein sequence |
