Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027407.t1 | XP_003605929.1 | 99.6 | 898 | 4 | 0 | 1 | 898 | 82 | 979 | 0.00E+00 | 1816.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027407.t1 | P49608 | 91.5 | 898 | 76 | 0 | 1 | 898 | 1 | 898 | 0.0e+00 | 1693.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027407.t1 | G7JDJ4 | 99.6 | 898 | 4 | 0 | 1 | 898 | 82 | 979 | 0.0e+00 | 1816.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027407 | MS.gene02695 | PPI |
| MS.gene027407 | MS.gene011805 | PPI |
| MS.gene32746 | MS.gene027407 | PPI |
| MS.gene027407 | MS.gene99212 | PPI |
| MS.gene56790 | MS.gene027407 | PPI |
| MS.gene027407 | MS.gene041065 | PPI |
| MS.gene027407 | MS.gene42646 | PPI |
| MS.gene027407 | MS.gene014952 | PPI |
| MS.gene027407 | MS.gene90508 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027407.t1 | MTR_4g048190 | 99.555 | 898 | 4 | 0 | 1 | 898 | 82 | 979 | 0.0 | 1854 |
| MS.gene027407.t1 | MTR_2g088360 | 93.757 | 897 | 56 | 0 | 2 | 898 | 83 | 979 | 0.0 | 1761 |
| MS.gene027407.t1 | MTR_5g022940 | 85.173 | 897 | 132 | 1 | 1 | 896 | 1 | 897 | 0.0 | 1617 |
| MS.gene027407.t1 | MTR_1g075520 | 77.642 | 899 | 193 | 2 | 1 | 898 | 4 | 895 | 0.0 | 1462 |
| MS.gene027407.t1 | MTR_5g022940 | 85.624 | 793 | 114 | 0 | 104 | 896 | 1 | 793 | 0.0 | 1442 |
| MS.gene027407.t1 | MTR_2g067620 | 83.160 | 576 | 59 | 6 | 55 | 612 | 134 | 689 | 0.0 | 931 |
| MS.gene027407.t1 | MTR_2g067620 | 73.494 | 166 | 14 | 1 | 763 | 898 | 700 | 865 | 5.86e-68 | 243 |
| MS.gene027407.t1 | MTR_4g115490 | 63.889 | 144 | 26 | 2 | 579 | 721 | 154 | 272 | 1.23e-50 | 180 |
| MS.gene027407.t1 | MTR_4g074000 | 43.077 | 130 | 61 | 2 | 701 | 817 | 1 | 130 | 9.72e-23 | 98.2 |
| MS.gene027407.t1 | MTR_1g045750 | 24.688 | 401 | 220 | 13 | 183 | 570 | 166 | 497 | 3.18e-16 | 83.2 |
| MS.gene027407.t1 | MTR_1g073200 | 25.310 | 403 | 233 | 13 | 183 | 570 | 170 | 519 | 7.47e-13 | 72.4 |
| MS.gene027407.t1 | MTR_4g048070 | 43.478 | 92 | 31 | 2 | 761 | 852 | 83 | 153 | 2.55e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027407.t1 | AT2G05710 | 90.646 | 898 | 84 | 0 | 1 | 898 | 93 | 990 | 0.0 | 1715 |
| MS.gene027407.t1 | AT4G35830 | 84.521 | 898 | 139 | 0 | 1 | 898 | 1 | 898 | 0.0 | 1611 |
| MS.gene027407.t1 | AT4G26970 | 83.464 | 895 | 148 | 0 | 1 | 895 | 98 | 992 | 0.0 | 1587 |
| MS.gene027407.t1 | AT4G35830 | 84.528 | 795 | 123 | 0 | 104 | 898 | 1 | 795 | 0.0 | 1429 |
| MS.gene027407.t1 | AT5G54950 | 62.903 | 62 | 23 | 0 | 821 | 882 | 1 | 62 | 4.35e-21 | 88.6 |
| MS.gene027407.t1 | AT4G13430 | 25.682 | 440 | 236 | 15 | 144 | 570 | 140 | 501 | 7.33e-17 | 85.1 |
Find 247 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAACAAAGTTGGGTTTA+AGG | 0.199704 | 4.4:+52837834 | MS.gene027407:CDS |
| GGCTCATGAGCTTGGTTTGC+AGG | 0.204736 | 4.4:+52839212 | MS.gene027407:CDS |
| CGCAAGGACTTCAATTCTTA+TGG | 0.210088 | 4.4:+52841591 | MS.gene027407:CDS |
| TGTCAGAGATACAAGACTTC+TGG | 0.267854 | 4.4:+52842219 | MS.gene027407:intron |
| CTTGTTGTTCCTCCTGGTTC+TGG | 0.274154 | 4.4:+52836453 | MS.gene027407:CDS |
| CGGAAATTATTACCGATTCT+TGG | 0.286253 | 4.4:-52834670 | None:intergenic |
| GCCTGCTCGTGTTCTCTTGC+AGG | 0.292575 | 4.4:+52835598 | MS.gene027407:CDS |
| GTTGTTGCTTATGCTCTTGC+TGG | 0.298076 | 4.4:+52839942 | MS.gene027407:CDS |
| AAATGCAGTGCAGGCTAATA+TGG | 0.299347 | 4.4:+52836359 | MS.gene027407:CDS |
| GTTGGAATGTGAACTGTCTT+AGG | 0.299694 | 4.4:-52841702 | None:intergenic |
| GTAGCAGCTGCTGTGTTGTC+TGG | 0.301206 | 4.4:+52839852 | MS.gene027407:CDS |
| ACAACATGTATTGGCAATTC+AGG | 0.302030 | 4.4:+52839621 | MS.gene027407:CDS |
| AAGCCAGGTGGTGGCGAGTT+TGG | 0.306384 | 4.4:+52834616 | MS.gene027407:CDS |
| CAGGTCAATCTTGAATATCT+TGG | 0.311696 | 4.4:+52836586 | MS.gene027407:intron |
| GCTAATATGTCTCCTGAATA+TGG | 0.311847 | 4.4:+52837249 | MS.gene027407:CDS |
| CATATCAGCCGCAACAAGAT+AGG | 0.312149 | 4.4:+52837581 | MS.gene027407:intron |
| TGCTGTCACCAAAGTTTAAC+AGG | 0.312741 | 4.4:-52841485 | None:intergenic |
| GAATAGGAACCTTACCTCTT+TGG | 0.312837 | 4.4:-52837661 | None:intergenic |
| CCCATGGTGGCACCATATTC+AGG | 0.318308 | 4.4:-52837261 | None:intergenic |
| ATAGATGGGCTTGGTGTTGC+TGG | 0.324737 | 4.4:+52836682 | MS.gene027407:CDS |
| ATGTCTACCTCAGGGATATC+TGG | 0.325499 | 4.4:+52841130 | MS.gene027407:CDS |
| GCTTCTGCCATCTCAGAAAA+TGG | 0.328847 | 4.4:+52839663 | MS.gene027407:CDS |
| CAAATCTCTCCTTGTTTCTC+TGG | 0.328941 | 4.4:-52836392 | None:intergenic |
| CAGTTGTGACTTTGACATCT+TGG | 0.330697 | 4.4:-52842623 | None:intergenic |
| TTACAATATCTCAAGCTAAC+TGG | 0.332615 | 4.4:+52837309 | MS.gene027407:CDS |
| TCACATACAACTATGATAGA+TGG | 0.333043 | 4.4:+52836667 | MS.gene027407:CDS |
| GGCTGGTCTTGTAGCGAAAA+AGG | 0.338637 | 4.4:+52839191 | MS.gene027407:CDS |
| GTTGTTGGGTTCAAGCTATC+TGG | 0.346551 | 4.4:+52836973 | MS.gene027407:CDS |
| CTTGTTAACAAGCTCTTAAA+CGG | 0.349560 | 4.4:+52841669 | MS.gene027407:CDS |
| CCATCCTTCCCCGTTCCAAT+TGG | 0.353546 | 4.4:-52841102 | None:intergenic |
| GGTGTTGCTGGATGGGGTGT+TGG | 0.360360 | 4.4:+52836694 | MS.gene027407:CDS |
| TGGGCTTGGTGTTGCTGGAT+GGG | 0.362103 | 4.4:+52836687 | MS.gene027407:CDS |
| AGTATGGCAGTGGAAGTTCT+AGG | 0.365798 | 4.4:+52842271 | MS.gene027407:CDS |
| CTTAGAAAGCACGGTGTTGT+AGG | 0.374489 | 4.4:+52837051 | MS.gene027407:CDS |
| TCTGCAATTTCTTCAGTAGA+TGG | 0.385681 | 4.4:-52841153 | None:intergenic |
| TGCCAAGGGTCCAATGTTAT+TGG | 0.387232 | 4.4:+52842302 | MS.gene027407:CDS |
| GTCAGAGATACAAGACTTCT+GGG | 0.387249 | 4.4:+52842220 | MS.gene027407:intron |
| AACATGCTTGTTGTTCCTCC+TGG | 0.388255 | 4.4:+52836447 | MS.gene027407:CDS |
| GAGAAGGAGCCAATTGGAAC+GGG | 0.392945 | 4.4:+52841093 | MS.gene027407:CDS |
| CAGCTGATACTCTCTACTCT+TGG | 0.393908 | 4.4:+52841370 | MS.gene027407:CDS |
| AGGAGAATTCTAATCGAGTA+TGG | 0.397433 | 4.4:-52835467 | None:intergenic |
| CGCAGTAACTTGGTGGGAAT+GGG | 0.405387 | 4.4:+52842489 | MS.gene027407:CDS |
| CAATTCTTATGGAAGTCGTC+GGG | 0.408766 | 4.4:+52841602 | MS.gene027407:CDS |
| ACAAGTCTTGCTCCAGGCTC+TGG | 0.409104 | 4.4:+52839395 | MS.gene027407:CDS |
| TTGTTAACAAGCTCTTAAAC+GGG | 0.410798 | 4.4:+52841670 | MS.gene027407:CDS |
| TGTCCCAGCTGTCGTGGACT+TGG | 0.414264 | 4.4:+52835735 | MS.gene027407:CDS |
| GTGCTGGCTGGAGCTGAGTA+TGG | 0.414766 | 4.4:+52842255 | MS.gene027407:CDS |
| CTTTCAAAGGCACACGGTCG+TGG | 0.415053 | 4.4:-52837783 | None:intergenic |
| CTTGTCAAGTTTCCCTTGAA+AGG | 0.419364 | 4.4:-52834586 | None:intergenic |
| ATGGGCTTGGTGTTGCTGGA+TGG | 0.419549 | 4.4:+52836686 | MS.gene027407:CDS |
| TCGCAGTAACTTGGTGGGAA+TGG | 0.420813 | 4.4:+52842488 | MS.gene027407:CDS |
| CAAACCCAAGTGTTATGCTT+GGG | 0.423891 | 4.4:+52839169 | MS.gene027407:CDS |
| CTCTATCCTGACAGTGTGGT+TGG | 0.425659 | 4.4:+52836637 | MS.gene027407:CDS |
| CAAGCCAAGTCCACGACAGC+TGG | 0.426365 | 4.4:-52835739 | None:intergenic |
| CTCTTTGGTCCTGAGATACA+TGG | 0.434528 | 4.4:-52837646 | None:intergenic |
| TGGTCAACGACGAGATCAAC+AGG | 0.435639 | 4.4:-52836306 | None:intergenic |
| CAGTGGAAGTTCTAGGGATT+GGG | 0.436396 | 4.4:+52842278 | MS.gene027407:CDS |
| GGGCTTGGTGTTGCTGGATG+GGG | 0.436432 | 4.4:+52836688 | MS.gene027407:CDS |
| GTTGCTGGATGGGGTGTTGG+AGG | 0.436620 | 4.4:+52836697 | MS.gene027407:CDS |
| CTGCCATGCTTGAGTTCTGC+TGG | 0.439102 | 4.4:-52839108 | None:intergenic |
| ATGGTCATGTTCTTGAAGTA+TGG | 0.442787 | 4.4:-52841423 | None:intergenic |
| AATTACGAATGGCGGATTCA+AGG | 0.443905 | 4.4:-52835487 | None:intergenic |
| GCAGTGGAAGTTCTAGGGAT+TGG | 0.445972 | 4.4:+52842277 | MS.gene027407:CDS |
| AGCTGATACTCTCTACTCTT+GGG | 0.446059 | 4.4:+52841371 | MS.gene027407:CDS |
| GACTTTGAGAAGGAGCCAAT+TGG | 0.446271 | 4.4:+52841087 | MS.gene027407:CDS |
| TGGTTCTGGTATAGTACATC+AGG | 0.450673 | 4.4:+52836467 | MS.gene027407:CDS |
| GCGTGTCTTGATAACAAAGT+TGG | 0.450840 | 4.4:+52837826 | MS.gene027407:CDS |
| GTCAAAGTCACAACTGATAG+TGG | 0.454012 | 4.4:+52842630 | MS.gene027407:CDS |
| TTCTAGGGATTGGGCTGCCA+AGG | 0.455881 | 4.4:+52842287 | MS.gene027407:CDS |
| TCTATCCTGACAGTGTGGTT+GGG | 0.455891 | 4.4:+52836638 | MS.gene027407:CDS |
| ATCCCTCTTTGCTACAAACC+TGG | 0.456472 | 4.4:+52842516 | MS.gene027407:CDS |
| GAACATGACCATGGATCCTC+CGG | 0.457546 | 4.4:+52841434 | MS.gene027407:CDS |
| CGTGTCTTGATAACAAAGTT+GGG | 0.457661 | 4.4:+52837827 | MS.gene027407:CDS |
| TTCAAATAAAATCAATCCTC+TGG | 0.461087 | 4.4:+52835795 | MS.gene027407:CDS |
| TGCTTATGCTCTTGCTGGCA+CGG | 0.461402 | 4.4:+52839947 | MS.gene027407:CDS |
| CCAGGCAAAACCATGCTCAT+AGG | 0.461883 | 4.4:-52836949 | None:intergenic |
| AGCGAGTGAAAATCCTTTCA+AGG | 0.462520 | 4.4:+52834573 | MS.gene027407:intron |
| ATGGCAAGAATGTCTACCTC+AGG | 0.470291 | 4.4:+52841121 | MS.gene027407:CDS |
| CAAGACACCATTGTGCTGGC+TGG | 0.470520 | 4.4:+52842243 | MS.gene027407:CDS |
| GGTGTCAAAGCGTGCTATGC+AGG | 0.471292 | 4.4:-52842664 | None:intergenic |
| CCTGAATATGGTGCCACCAT+GGG | 0.471961 | 4.4:+52837261 | MS.gene027407:CDS |
| CGATGATAGAGTCTTATCTC+AGG | 0.472591 | 4.4:+52837435 | MS.gene027407:CDS |
| CGTTTAAGAGCTTGTTAACA+AGG | 0.476089 | 4.4:-52841668 | None:intergenic |
| CAACATGTATTGGCAATTCA+GGG | 0.476725 | 4.4:+52839622 | MS.gene027407:CDS |
| CACCAATAACATTGGACCCT+TGG | 0.477440 | 4.4:-52842304 | None:intergenic |
| TCAGTCCCAACCACACTGTC+AGG | 0.479411 | 4.4:-52836643 | None:intergenic |
| TTTCAAAGGCACACGGTCGT+GGG | 0.479496 | 4.4:-52837782 | None:intergenic |
| ACCGATCATATTTCTCCAGC+TGG | 0.481229 | 4.4:+52841513 | MS.gene027407:CDS |
| GAAATGACGAGGTGATGGCG+AGG | 0.485734 | 4.4:+52841625 | MS.gene027407:CDS |
| TGAGGCAGCAATGCTCGGTC+AGG | 0.487131 | 4.4:+52836729 | MS.gene027407:CDS |
| GAACCCGGCCCTCAAAATTA+CGG | 0.487495 | 4.4:-52839878 | None:intergenic |
| CTTGCAGTTTGTTCCACATA+GGG | 0.488178 | 4.4:-52841344 | None:intergenic |
| ATGAGGTTACGTATGACATA+TGG | 0.489265 | 4.4:-52842859 | None:intergenic |
| TTTGGCTGTACAACATGTAT+TGG | 0.492336 | 4.4:+52839612 | MS.gene027407:CDS |
| GCCTATTGCCTGTTAAACTT+TGG | 0.492430 | 4.4:+52841477 | MS.gene027407:CDS |
| CGAGATGCTATGAATAAGCT+TGG | 0.492877 | 4.4:+52835766 | MS.gene027407:CDS |
| GAGAATTCATCGCAGTAACT+TGG | 0.493503 | 4.4:+52842479 | MS.gene027407:CDS |
| AGAACACGAGCAGGCTTGAA+AGG | 0.493805 | 4.4:-52835590 | None:intergenic |
| TATGTACTTCGGAACATGTC+AGG | 0.493929 | 4.4:-52841300 | None:intergenic |
| GTGACTTTGACATCTTGGCC+AGG | 0.494276 | 4.4:-52842618 | None:intergenic |
| TCCCTCTTTGCTACAAACCT+GGG | 0.494799 | 4.4:+52842517 | MS.gene027407:CDS |
| AATGTGTCTGCATCCTCCCC+AGG | 0.496499 | 4.4:-52842534 | None:intergenic |
| TGCTATACCAAAAGAGGCAC+AGG | 0.497558 | 4.4:+52839053 | MS.gene027407:CDS |
| ACCAAAGTTTAACAGGCAAT+AGG | 0.498703 | 4.4:-52841478 | None:intergenic |
| TGTAATGTAACGTGATCCAC+AGG | 0.499453 | 4.4:-52837291 | None:intergenic |
| GCAGACACATTGGGATTGAC+TGG | 0.499598 | 4.4:+52842546 | MS.gene027407:CDS |
| TTCATGAATATATGTTGAGT+TGG | 0.502717 | 4.4:-52841397 | None:intergenic |
| TAGCAGCTGCTGTGTTGTCT+GGG | 0.503023 | 4.4:+52839853 | MS.gene027407:CDS |
| TCAGCCTTCATTTCTTTCAA+AGG | 0.504379 | 4.4:-52837796 | None:intergenic |
| TGAAAGAAATGAAGGCTGAC+TGG | 0.505538 | 4.4:+52837800 | MS.gene027407:CDS |
| TACAATATCTCAAGCTAACT+GGG | 0.505582 | 4.4:+52837310 | MS.gene027407:CDS |
| GGGGAGGATGCAGACACATT+GGG | 0.508251 | 4.4:+52842537 | MS.gene027407:CDS |
| CCAAGTGTTATGCTTGGGGC+TGG | 0.508975 | 4.4:+52839174 | MS.gene027407:CDS |
| ATGTTGAGAAGATTATTGAC+TGG | 0.511410 | 4.4:+52835537 | MS.gene027407:CDS |
| ATGGATCCTCCGGGATCTCA+TGG | 0.511899 | 4.4:+52841444 | MS.gene027407:CDS |
| AGCTTGAACCCAACAACTCC+AGG | 0.512315 | 4.4:-52836967 | None:intergenic |
| CCAATTGGAACGGGGAAGGA+TGG | 0.512474 | 4.4:+52841102 | MS.gene027407:CDS |
| TGGGCAAGACACCATTGTGC+TGG | 0.512533 | 4.4:+52842239 | MS.gene027407:CDS |
| AAGCTCTTAAACGGGGAAGT+TGG | 0.512658 | 4.4:+52841678 | MS.gene027407:CDS |
| CTTGTTAACAAGGCGAATGT+TGG | 0.512774 | 4.4:-52841658 | None:intergenic |
| TTAGTAACAACTCCAGAGCC+TGG | 0.513461 | 4.4:-52839407 | None:intergenic |
| TTGGAATGTGAACTGTCTTA+GGG | 0.513630 | 4.4:-52841701 | None:intergenic |
| CAGTTCAAGTTGACGTGGCA+AGG | 0.514019 | 4.4:+52836331 | MS.gene027407:CDS |
| AAAATCAGTGAGATCAAGCC+TGG | 0.514843 | 4.4:+52842600 | MS.gene027407:CDS |
| CCACGTCAACTTGAACTGAA+TGG | 0.515185 | 4.4:-52836326 | None:intergenic |
| AAGACAGTTCACATTCCAAC+TGG | 0.516144 | 4.4:+52841705 | MS.gene027407:CDS |
| AAATGACGAGGTGATGGCGA+GGG | 0.517899 | 4.4:+52841626 | MS.gene027407:CDS |
| GTCAGCTTCACTGCTTAATG+AGG | 0.519524 | 4.4:-52842876 | None:intergenic |
| TTTCCAAACTCGCCACCACC+TGG | 0.520805 | 4.4:-52834619 | None:intergenic |
| TTAGAAAGCACGGTGTTGTA+GGG | 0.521114 | 4.4:+52837052 | MS.gene027407:CDS |
| GAACTTGCATACTTCAACCA+TGG | 0.524044 | 4.4:+52842826 | MS.gene027407:CDS |
| TCTCTGAATGATCCAAGAAT+CGG | 0.524068 | 4.4:+52834658 | MS.gene027407:CDS |
| TCCTGAATATGGTGCCACCA+TGG | 0.525236 | 4.4:+52837260 | MS.gene027407:CDS |
| TCCTTGTTAATGCTTCCAGC+TGG | 0.525882 | 4.4:-52841528 | None:intergenic |
| ATGCTTGCAGCCTATGAGCA+TGG | 0.526901 | 4.4:+52836939 | MS.gene027407:intron |
| GTTCAACCCCACGCTCTAGT+AGG | 0.527414 | 4.4:-52841569 | None:intergenic |
| AAGGTCAGAAAATGCAGTGC+AGG | 0.529335 | 4.4:+52836350 | MS.gene027407:CDS |
| CACATACAACTATGATAGAT+GGG | 0.529419 | 4.4:+52836668 | MS.gene027407:CDS |
| GACGTAGAACCATGTATCTC+AGG | 0.529558 | 4.4:+52837637 | MS.gene027407:CDS |
| TGTTGAGAAGATTATTGACT+GGG | 0.531470 | 4.4:+52835538 | MS.gene027407:CDS |
| AACTCGCCACCACCTGGCTT+AGG | 0.533405 | 4.4:-52834613 | None:intergenic |
| TACATGGTTCTACGTCGGAC+AGG | 0.533933 | 4.4:-52837630 | None:intergenic |
| TCTGTTTGTTGACTATAATG+AGG | 0.534685 | 4.4:+52837466 | MS.gene027407:CDS |
| TCTAGTAGGTATTTAGCAGC+AGG | 0.535650 | 4.4:-52841555 | None:intergenic |
| TCAAACCCAAGTGTTATGCT+TGG | 0.536303 | 4.4:+52839168 | MS.gene027407:CDS |
| ACATAAAGCTTCTCACCAGT+TGG | 0.537679 | 4.4:-52841720 | None:intergenic |
| GGGATTTGCTATACCAAAAG+AGG | 0.538491 | 4.4:+52839047 | MS.gene027407:intron |
| AAATCTGCAGAATGGTGTTA+CGG | 0.539268 | 4.4:+52836996 | MS.gene027407:CDS |
| ATGAGATCCCGGAGGATCCA+TGG | 0.539721 | 4.4:-52841442 | None:intergenic |
| CCCCAGGTTTGTAGCAAAGA+GGG | 0.541656 | 4.4:-52842518 | None:intergenic |
| GAGGAACAACAAGCATGTTA+CGG | 0.543288 | 4.4:-52836443 | None:intergenic |
| ATATCAGCCGCAACAAGATA+GGG | 0.543408 | 4.4:+52837582 | MS.gene027407:intron |
| GAAGCTGAGGCAGCAATGCT+CGG | 0.545462 | 4.4:+52836724 | MS.gene027407:CDS |
| ACATATGAGTCTATCACAAA+GGG | 0.548128 | 4.4:+52841318 | MS.gene027407:CDS |
| TCAATTCTTATGGAAGTCGT+CGG | 0.548175 | 4.4:+52841601 | MS.gene027407:CDS |
| TGGGGAGGATGCAGACACAT+TGG | 0.548419 | 4.4:+52842536 | MS.gene027407:CDS |
| TCACAAAGGGTAACCCTATG+TGG | 0.548614 | 4.4:+52841331 | MS.gene027407:CDS |
| CCATTCAGTTCAAGTTGACG+TGG | 0.549622 | 4.4:+52836326 | MS.gene027407:CDS |
| CAAGAGTAGAGAGTATCAGC+TGG | 0.551741 | 4.4:-52841369 | None:intergenic |
| CTAAATACCTACTAGAGCGT+GGG | 0.552519 | 4.4:+52841562 | MS.gene027407:CDS |
| AAAATTATCGCAATTACGAA+TGG | 0.553355 | 4.4:-52835498 | None:intergenic |
| AATTCATCGCAGTAACTTGG+TGG | 0.555174 | 4.4:+52842482 | MS.gene027407:CDS |
| TCGGGGAAATGACGAGGTGA+TGG | 0.555657 | 4.4:+52841620 | MS.gene027407:CDS |
| CCAGCCCCAAGCATAACACT+TGG | 0.556722 | 4.4:-52839174 | None:intergenic |
| TACTGGTGTCCCAGCTGTCG+TGG | 0.556922 | 4.4:+52835729 | MS.gene027407:CDS |
| GCTGGAGCTGAGTATGGCAG+TGG | 0.557103 | 4.4:+52842261 | MS.gene027407:CDS |
| CAATCTTGAATATCTTGGAC+GGG | 0.562003 | 4.4:+52836591 | MS.gene027407:CDS |
| GTTAAAACAAGTCTTGCTCC+AGG | 0.564245 | 4.4:+52839389 | MS.gene027407:CDS |
| AGAGCGTGGGGTTGAACGCA+AGG | 0.564248 | 4.4:+52841575 | MS.gene027407:CDS |
| TGAGAAGGAGCCAATTGGAA+CGG | 0.564434 | 4.4:+52841092 | MS.gene027407:CDS |
| AAGGAACTCACCAATAACAT+TGG | 0.567124 | 4.4:-52842312 | None:intergenic |
| AATGACGAGGTGATGGCGAG+GGG | 0.568594 | 4.4:+52841627 | MS.gene027407:CDS |
| TCTTTCACACCATGAGATCC+CGG | 0.571329 | 4.4:-52841453 | None:intergenic |
| ACCTGCAAGAGAACACGAGC+AGG | 0.577460 | 4.4:-52835599 | None:intergenic |
| GGAGCCAATTGGAACGGGGA+AGG | 0.577897 | 4.4:+52841098 | MS.gene027407:CDS |
| ACTTGCAGTTTGTTCCACAT+AGG | 0.578259 | 4.4:-52841345 | None:intergenic |
| GCTAAATACCTACTAGAGCG+TGG | 0.578813 | 4.4:+52841561 | MS.gene027407:CDS |
| GGTTGACATTGACTTTGAGA+AGG | 0.579703 | 4.4:+52841077 | MS.gene027407:intron |
| TTGACAAGTCTTCCTAAGCC+AGG | 0.581866 | 4.4:+52834601 | MS.gene027407:CDS |
| GTATGGCAGTGGAAGTTCTA+GGG | 0.582014 | 4.4:+52842272 | MS.gene027407:CDS |
| TGATAGACTCATATGTACTT+CGG | 0.582019 | 4.4:-52841311 | None:intergenic |
| CACCATGGGCTTCTTCCCTG+TGG | 0.582342 | 4.4:+52837275 | MS.gene027407:CDS |
| TCAATCTTGAATATCTTGGA+CGG | 0.584359 | 4.4:+52836590 | MS.gene027407:CDS |
| ATTCTTGGATCATTCAGAGA+AGG | 0.587366 | 4.4:-52834655 | None:intergenic |
| GAATATGCCCTATCTTGTTG+CGG | 0.591911 | 4.4:-52837589 | None:intergenic |
| TTCAAAGGCACACGGTCGTG+GGG | 0.597454 | 4.4:-52837781 | None:intergenic |
| AGTCTTCCTAAGCCAGGTGG+TGG | 0.597546 | 4.4:+52834607 | MS.gene027407:CDS |
| GTCATGTTCTTGAAGTATGG+AGG | 0.597918 | 4.4:-52841420 | None:intergenic |
| ATTATCGCAATTACGAATGG+CGG | 0.598102 | 4.4:-52835495 | None:intergenic |
| GCGAGTGAAAATCCTTTCAA+GGG | 0.600264 | 4.4:+52834574 | MS.gene027407:intron |
| AAGATAGTTAGCTCTTGTCA+AGG | 0.602141 | 4.4:-52839904 | None:intergenic |
| CAAAAGTATCTAAATGAACA+AGG | 0.602869 | 4.4:+52839573 | MS.gene027407:CDS |
| ACAACTATGATAGATGGGCT+TGG | 0.605199 | 4.4:+52836673 | MS.gene027407:CDS |
| TCTAGGGATTGGGCTGCCAA+GGG | 0.607673 | 4.4:+52842288 | MS.gene027407:CDS |
| AAGCCAAGTCCACGACAGCT+GGG | 0.610945 | 4.4:-52835738 | None:intergenic |
| AGCAACAACTAGAGGAGGTG+AGG | 0.613592 | 4.4:-52839928 | None:intergenic |
| TGTGCCTTTGAAAGAAATGA+AGG | 0.613775 | 4.4:+52837792 | MS.gene027407:CDS |
| CCCTCTTTGCTACAAACCTG+GGG | 0.615039 | 4.4:+52842518 | MS.gene027407:CDS |
| AAACCCAAGTGTTATGCTTG+GGG | 0.616138 | 4.4:+52839170 | MS.gene027407:CDS |
| TACATATGAGTCTATCACAA+AGG | 0.616248 | 4.4:+52841317 | MS.gene027407:CDS |
| AGAGCATAAGCAACAACTAG+AGG | 0.617785 | 4.4:-52839936 | None:intergenic |
| CTATCTGGAAATCTGCAGAA+TGG | 0.624123 | 4.4:+52836988 | MS.gene027407:CDS |
| AGATAGTTAGCTCTTGTCAA+GGG | 0.626760 | 4.4:-52839903 | None:intergenic |
| GCATAAGCAACAACTAGAGG+AGG | 0.628223 | 4.4:-52839933 | None:intergenic |
| TCATTTCTTTCAAAGGCACA+CGG | 0.629426 | 4.4:-52837789 | None:intergenic |
| TCCCCAGGTTTGTAGCAAAG+AGG | 0.630250 | 4.4:-52842519 | None:intergenic |
| ATTCATCGCAGTAACTTGGT+GGG | 0.630334 | 4.4:+52842483 | MS.gene027407:CDS |
| TTATGTGTTCGATGCAGCAA+TGG | 0.631224 | 4.4:+52841737 | MS.gene027407:CDS |
| CTTTCTAAGAATCTGTGTCA+CGG | 0.632458 | 4.4:-52837037 | None:intergenic |
| ACTTGAATTCCAGAGAAACA+AGG | 0.633891 | 4.4:+52836383 | MS.gene027407:CDS |
| CATATGGAAGAATTCCTCCA+TGG | 0.634790 | 4.4:-52842843 | None:intergenic |
| TCCAGCTGGAAGCATTAACA+AGG | 0.635278 | 4.4:+52841527 | MS.gene027407:CDS |
| TCCAGCTGGAGAAATATGAT+CGG | 0.639805 | 4.4:-52841514 | None:intergenic |
| TGGCAAGAATGTCTACCTCA+GGG | 0.641425 | 4.4:+52841122 | MS.gene027407:CDS |
| TCTTTGCTACAAACCTGGGG+AGG | 0.642538 | 4.4:+52842521 | MS.gene027407:CDS |
| ACACAGATTCTTAGAAAGCA+CGG | 0.643034 | 4.4:+52837042 | MS.gene027407:CDS |
| TGTTGGAGGTATCGAAGCTG+AGG | 0.643188 | 4.4:+52836711 | MS.gene027407:CDS |
| ATGACGAGGTGATGGCGAGG+GGG | 0.643488 | 4.4:+52841628 | MS.gene027407:CDS |
| GATGATAGAGTCTTATCTCA+GGG | 0.643636 | 4.4:+52837436 | MS.gene027407:CDS |
| CATGTATCTCAGGACCAAAG+AGG | 0.644393 | 4.4:+52837647 | MS.gene027407:CDS |
| AGCTGGAGAAATATGATCGG+TGG | 0.644456 | 4.4:-52841511 | None:intergenic |
| CAACCAGCAGAACTCAAGCA+TGG | 0.649281 | 4.4:+52839105 | MS.gene027407:CDS |
| AACATGACCATGGATCCTCC+GGG | 0.649388 | 4.4:+52841435 | MS.gene027407:CDS |
| ATCCACAGGGAAGAAGCCCA+TGG | 0.649532 | 4.4:-52837277 | None:intergenic |
| CAGCCCCAAGCATAACACTT+GGG | 0.651191 | 4.4:-52839173 | None:intergenic |
| CTCAGCTCCAGCCAGCACAA+TGG | 0.654348 | 4.4:-52842250 | None:intergenic |
| ATCTACTGAAGAAATTGCAG+AGG | 0.657410 | 4.4:+52841155 | MS.gene027407:CDS |
| TGATGTACTATACCAGAACC+AGG | 0.661607 | 4.4:-52836465 | None:intergenic |
| AACATGTATTGGCAATTCAG+GGG | 0.662698 | 4.4:+52839623 | MS.gene027407:CDS |
| ATACTTCAAGAACATGACCA+TGG | 0.667430 | 4.4:+52841425 | MS.gene027407:CDS |
| AGAAGGAGCCAATTGGAACG+GGG | 0.669879 | 4.4:+52841094 | MS.gene027407:CDS |
| AAGTCGTCGGGGAAATGACG+AGG | 0.672312 | 4.4:+52841614 | MS.gene027407:CDS |
| CTCTTGTCAAGGGATGAACC+CGG | 0.673673 | 4.4:-52839893 | None:intergenic |
| AATTCTTATGGAAGTCGTCG+GGG | 0.678191 | 4.4:+52841603 | MS.gene027407:CDS |
| TTACTAAATATCTACTCCAG+AGG | 0.681676 | 4.4:+52839423 | MS.gene027407:CDS |
| CTTACTCTATCCTGACAGTG+TGG | 0.682246 | 4.4:+52836633 | MS.gene027407:CDS |
| CATAGCACGCTTTGACACCG+AGG | 0.696443 | 4.4:+52842668 | MS.gene027407:CDS |
| TGTTAACAAGCTCTTAAACG+GGG | 0.704394 | 4.4:+52841671 | MS.gene027407:CDS |
| TAAATACCTACTAGAGCGTG+GGG | 0.714753 | 4.4:+52841563 | MS.gene027407:CDS |
| CTTGCATACTTCAACCATGG+AGG | 0.716794 | 4.4:+52842829 | MS.gene027407:CDS |
| CACAGGGAAGAAGCCCATGG+TGG | 0.716978 | 4.4:-52837274 | None:intergenic |
| ACAAGTCTTCCTAAGCCAGG+TGG | 0.720220 | 4.4:+52834604 | MS.gene027407:CDS |
| TGAGATACATGGTTCTACGT+CGG | 0.727878 | 4.4:-52837635 | None:intergenic |
| GTAATGTAACGTGATCCACA+GGG | 0.728319 | 4.4:-52837290 | None:intergenic |
| TTCACACCATGAGATCCCGG+AGG | 0.770164 | 4.4:-52841450 | None:intergenic |
| TGTACTATACCAGAACCAGG+AGG | 0.789089 | 4.4:-52836462 | None:intergenic |
| TAGATGGCCAGATATCCCTG+AGG | 0.811800 | 4.4:-52841137 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 52834416 | 52842891 | 52834416 | ID=MS.gene027407 |
| chr4.4 | mRNA | 52834416 | 52842891 | 52834416 | ID=MS.gene027407.t1;Parent=MS.gene027407 |
| chr4.4 | exon | 52834416 | 52834419 | 52834416 | ID=MS.gene027407.t1.exon1;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52834416 | 52834419 | 52834416 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52834575 | 52834679 | 52834575 | ID=MS.gene027407.t1.exon2;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52834575 | 52834679 | 52834575 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52835459 | 52835619 | 52835459 | ID=MS.gene027407.t1.exon3;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52835459 | 52835619 | 52835459 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52835724 | 52835816 | 52835724 | ID=MS.gene027407.t1.exon4;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52835724 | 52835816 | 52835724 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52836303 | 52836488 | 52836303 | ID=MS.gene027407.t1.exon5;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52836303 | 52836488 | 52836303 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52836589 | 52836750 | 52836589 | ID=MS.gene027407.t1.exon6;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52836589 | 52836750 | 52836589 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52836949 | 52837093 | 52836949 | ID=MS.gene027407.t1.exon7;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52836949 | 52837093 | 52836949 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52837205 | 52837347 | 52837205 | ID=MS.gene027407.t1.exon8;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52837205 | 52837347 | 52837205 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52837431 | 52837487 | 52837431 | ID=MS.gene027407.t1.exon9;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52837431 | 52837487 | 52837431 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52837589 | 52837668 | 52837589 | ID=MS.gene027407.t1.exon10;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52837589 | 52837668 | 52837589 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52837780 | 52837855 | 52837780 | ID=MS.gene027407.t1.exon11;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52837780 | 52837855 | 52837780 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52839048 | 52839233 | 52839048 | ID=MS.gene027407.t1.exon12;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52839048 | 52839233 | 52839048 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52839377 | 52839444 | 52839377 | ID=MS.gene027407.t1.exon13;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52839377 | 52839444 | 52839377 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52839566 | 52839684 | 52839566 | ID=MS.gene027407.t1.exon14;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52839566 | 52839684 | 52839566 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52839847 | 52839968 | 52839847 | ID=MS.gene027407.t1.exon15;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52839847 | 52839968 | 52839847 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52841078 | 52841176 | 52841078 | ID=MS.gene027407.t1.exon16;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52841078 | 52841176 | 52841078 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52841279 | 52841758 | 52841279 | ID=MS.gene027407.t1.exon17;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52841279 | 52841758 | 52841279 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52842225 | 52842323 | 52842225 | ID=MS.gene027407.t1.exon18;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52842225 | 52842323 | 52842225 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52842447 | 52842689 | 52842447 | ID=MS.gene027407.t1.exon19;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52842447 | 52842689 | 52842447 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| chr4.4 | exon | 52842823 | 52842891 | 52842823 | ID=MS.gene027407.t1.exon20;Parent=MS.gene027407.t1 |
| chr4.4 | CDS | 52842823 | 52842891 | 52842823 | ID=cds.MS.gene027407.t1;Parent=MS.gene027407.t1 |
| Gene Sequence |
| Protein sequence |
