Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027416.t1 | XP_003605903.1 | 97.8 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 3.00E-152 | 547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027416.t1 | P87027 | 45.5 | 187 | 102 | 0 | 90 | 276 | 9 | 195 | 2.5e-46 | 187.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027416.t1 | G7JDG8 | 97.8 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 2.2e-152 | 547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027416 | MS.gene038386 | PPI |
| MS.gene027416 | MS.gene017154 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027416.t1 | MTR_4g047870 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 565 |
| MS.gene027416.t1 | MTR_5g092060 | 63.707 | 259 | 91 | 1 | 21 | 276 | 31 | 289 | 6.15e-111 | 322 |
| MS.gene027416.t1 | MTR_3g064390 | 30.539 | 167 | 106 | 4 | 93 | 256 | 12 | 171 | 4.80e-14 | 69.7 |
| MS.gene027416.t1 | MTR_5g076590 | 29.670 | 182 | 112 | 5 | 78 | 256 | 3 | 171 | 7.53e-14 | 68.9 |
| MS.gene027416.t1 | MTR_7g103070 | 26.667 | 180 | 124 | 3 | 90 | 266 | 15 | 189 | 3.00e-13 | 67.8 |
| MS.gene027416.t1 | MTR_8g103550 | 27.879 | 165 | 113 | 2 | 93 | 256 | 11 | 170 | 5.95e-13 | 66.6 |
| MS.gene027416.t1 | MTR_1g062760 | 26.667 | 180 | 123 | 4 | 90 | 266 | 13 | 186 | 1.73e-12 | 65.5 |
| MS.gene027416.t1 | MTR_4g098950 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 1.86e-12 | 65.1 |
| MS.gene027416.t1 | MTR_5g013900 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 3.51e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027416.t1 | AT3G21700 | 60.269 | 297 | 92 | 5 | 1 | 276 | 1 | 292 | 2.72e-111 | 323 |
| MS.gene027416.t1 | AT3G21700 | 59.933 | 297 | 92 | 6 | 1 | 276 | 1 | 291 | 2.10e-109 | 318 |
| MS.gene027416.t1 | AT5G54840 | 52.500 | 280 | 124 | 5 | 1 | 276 | 12 | 286 | 3.49e-91 | 272 |
| MS.gene027416.t1 | AT3G21700 | 52.459 | 244 | 89 | 6 | 1 | 223 | 1 | 238 | 3.25e-68 | 212 |
| MS.gene027416.t1 | AT5G54840 | 44.444 | 198 | 101 | 5 | 1 | 194 | 12 | 204 | 2.16e-40 | 139 |
| MS.gene027416.t1 | AT5G54840 | 55.714 | 140 | 57 | 3 | 59 | 194 | 66 | 204 | 7.49e-40 | 139 |
| MS.gene027416.t1 | AT4G19640 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 1.85e-14 | 70.9 |
| MS.gene027416.t1 | AT5G45130 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 4.83e-14 | 69.7 |
| MS.gene027416.t1 | AT2G44610 | 25.444 | 169 | 120 | 2 | 89 | 256 | 7 | 170 | 3.22e-13 | 67.4 |
| MS.gene027416.t1 | AT5G45130 | 29.268 | 164 | 106 | 4 | 96 | 256 | 23 | 179 | 5.50e-13 | 67.0 |
| MS.gene027416.t1 | AT5G03530 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 8.34e-13 | 66.2 |
| MS.gene027416.t1 | AT5G03530 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 8.34e-13 | 66.2 |
| MS.gene027416.t1 | AT5G59150 | 26.667 | 180 | 125 | 3 | 81 | 259 | 3 | 176 | 1.81e-12 | 65.5 |
| MS.gene027416.t1 | AT1G07410 | 24.852 | 169 | 121 | 2 | 92 | 259 | 13 | 176 | 5.56e-11 | 61.2 |
Find 62 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGTATATCCTATTGTATC+TGG | 0.293441 | 4.4:+53379507 | MS.gene027416:CDS |
| AAATGAATTGGATACTGATT+TGG | 0.296548 | 4.4:+53379061 | MS.gene027416:CDS |
| ACCTGGCTGCTTGCCTGAGC+AGG | 0.330688 | 4.4:-53378928 | None:intergenic |
| GCCTGCTCAGGCAAGCAGCC+AGG | 0.335224 | 4.4:+53378927 | MS.gene027416:CDS |
| CACCGACTGCTTGCCTGCTC+AGG | 0.346195 | 4.4:+53378915 | MS.gene027416:CDS |
| TTGTTGGGTGATTGCCAAAT+TGG | 0.353624 | 4.4:+53379101 | MS.gene027416:CDS |
| ATTGTTGTAGACGGCAATTC+CGG | 0.368449 | 4.4:+53380108 | MS.gene027416:intron |
| TTCACTCAAAATTAGCTTGT+TGG | 0.369785 | 4.4:+53379085 | MS.gene027416:CDS |
| TCACTCAAAATTAGCTTGTT+GGG | 0.374517 | 4.4:+53379086 | MS.gene027416:CDS |
| ATGGTCCATTGCATATCAAT+AGG | 0.376812 | 4.4:-53380169 | None:intergenic |
| ATCTCCGCGGGCTTCGCTGT+TGG | 0.390597 | 4.4:+53378995 | MS.gene027416:CDS |
| CCAGCTTCCAATGGCATGTA+AGG | 0.422047 | 4.4:+53379637 | MS.gene027416:CDS |
| GGTACAAAGAAGCAAGGAAA+TGG | 0.432118 | 4.4:+53380001 | MS.gene027416:CDS |
| CAAGTCGATGCACATTAAAC+AGG | 0.439545 | 4.4:+53379693 | MS.gene027416:CDS |
| AGAAGCAAGGAAATGGAATC+AGG | 0.446817 | 4.4:+53380008 | MS.gene027416:CDS |
| TTGTACTTCCCAGATACAAT+AGG | 0.464379 | 4.4:-53379516 | None:intergenic |
| CAAAACTCTTCGACTTACCT+TGG | 0.467610 | 4.4:+53381842 | MS.gene027416:CDS |
| TTGCTTCTTTGTACCATCCC+AGG | 0.472281 | 4.4:-53379993 | None:intergenic |
| CTGAATGAAATCATCAAACT+TGG | 0.473260 | 4.4:-53380143 | None:intergenic |
| ACGGCAATTCCGGTGTTGAT+AGG | 0.475548 | 4.4:+53380118 | MS.gene027416:CDS |
| TTCAGCATTGCCATCTCCGC+GGG | 0.486533 | 4.4:+53378983 | MS.gene027416:CDS |
| AACAGCGAAGCCCGCGGAGA+TGG | 0.486569 | 4.4:-53378993 | None:intergenic |
| ACTCCTTCGCGCTGCGAAGG+AGG | 0.493460 | 4.4:+53378844 | MS.gene027416:CDS |
| GAGGAAAGGACCAAATCAAA+TGG | 0.496937 | 4.4:+53379460 | MS.gene027416:CDS |
| GTCACTCCTTCGCGCTGCGA+AGG | 0.504957 | 4.4:+53378841 | MS.gene027416:CDS |
| TTTATTTCAGTGTCCTGGGA+TGG | 0.507119 | 4.4:+53379980 | MS.gene027416:intron |
| TGCCTGAGCAGGCAAGCAGT+CGG | 0.509410 | 4.4:-53378917 | None:intergenic |
| CCTTACATGCCATTGGAAGC+TGG | 0.517454 | 4.4:-53379637 | None:intergenic |
| GTGGAAAGGAATCTAAATGT+TGG | 0.519478 | 4.4:+53381868 | MS.gene027416:CDS |
| AGATTCCTTTCCACTGTCCA+AGG | 0.525285 | 4.4:-53381859 | None:intergenic |
| ACTGAGTCCTTACATGCCAT+TGG | 0.527947 | 4.4:-53379644 | None:intergenic |
| TGGTCCATTGCATATCAATA+GGG | 0.535828 | 4.4:-53380168 | None:intergenic |
| GTGTTGCAGGTGAAATATGT+TGG | 0.547304 | 4.4:+53379410 | MS.gene027416:intron |
| CTTCGACTTACCTTGGACAG+TGG | 0.548530 | 4.4:+53381849 | MS.gene027416:CDS |
| AGCTCCCTATTGATATGCAA+TGG | 0.560194 | 4.4:+53380164 | MS.gene027416:CDS |
| TGTTGCAGGTGAAATATGTT+GGG | 0.562818 | 4.4:+53379411 | MS.gene027416:intron |
| ACGTATATCCTATTGTATCT+GGG | 0.564779 | 4.4:+53379508 | MS.gene027416:CDS |
| AAATCAAATGGACAAAACAT+TGG | 0.567322 | 4.4:+53379472 | MS.gene027416:CDS |
| AAGAGCAGGGAGTGGAACAG+AGG | 0.569125 | 4.4:+53379441 | MS.gene027416:CDS |
| CTGTACGTAGCATTAGCACC+TGG | 0.570834 | 4.4:-53378945 | None:intergenic |
| TATTGTATCTGGGAAGTACA+AGG | 0.574671 | 4.4:+53379518 | MS.gene027416:CDS |
| ACTTACCTTGGACAGTGGAA+AGG | 0.576381 | 4.4:+53381854 | MS.gene027416:CDS |
| ATCTCCGGAGCAACGATACA+CGG | 0.577259 | 4.4:-53378875 | None:intergenic |
| AAGCCTCCTTCGCAGCGCGA+AGG | 0.580558 | 4.4:-53378847 | None:intergenic |
| ACAGCCGTGTATCGTTGCTC+CGG | 0.583287 | 4.4:+53378871 | MS.gene027416:CDS |
| GAGCTCGAAGAATACATCTC+CGG | 0.586436 | 4.4:-53378890 | None:intergenic |
| CAGGGAGTGGAACAGAGGAA+AGG | 0.595988 | 4.4:+53379446 | MS.gene027416:CDS |
| ATCAGAAGACCAGCTTCCAA+TGG | 0.601240 | 4.4:+53379628 | MS.gene027416:CDS |
| GGAGATGGCAATGCTGAATG+TGG | 0.604089 | 4.4:-53378978 | None:intergenic |
| ATTCAGCATTGCCATCTCCG+CGG | 0.613287 | 4.4:+53378982 | MS.gene027416:CDS |
| GCAATGGACCATCGCTAGTG+AGG | 0.615352 | 4.4:+53380180 | MS.gene027416:CDS |
| AGCGATTACCTCACTAGCGA+TGG | 0.627900 | 4.4:-53380188 | None:intergenic |
| GACAAAACATTGGTTGTGAG+TGG | 0.635995 | 4.4:+53379482 | MS.gene027416:CDS |
| ACAGGCAAGAACATATGCAA+AGG | 0.636144 | 4.4:+53381744 | MS.gene027416:intron |
| TGGGATGGTACAAAGAAGCA+AGG | 0.641092 | 4.4:+53379995 | MS.gene027416:CDS |
| AACTTGGTTCCTATCAACAC+CGG | 0.647380 | 4.4:-53380127 | None:intergenic |
| TGCACTTGAAAAGAACAAAG+TGG | 0.664540 | 4.4:-53381776 | None:intergenic |
| GAGATGGCAATGCTGAATGT+GGG | 0.664888 | 4.4:-53378977 | None:intergenic |
| TTGCAGAGAAGTTTCGACGG+TGG | 0.670379 | 4.4:-53379021 | None:intergenic |
| TGGTTGCAGAGAAGTTTCGA+CGG | 0.671139 | 4.4:-53379024 | None:intergenic |
| GAATCCAACAGCGAAGCCCG+CGG | 0.676951 | 4.4:-53378999 | None:intergenic |
| AATGGCATGTAAGGACTCAG+TGG | 0.696623 | 4.4:+53379646 | MS.gene027416:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATATAAATTTATAAGA+GGG | + | chr4.4:53380556-53380575 | MS.gene027416:intron | 10.0% |
| !! | ATGTTTAATATTATATATGA+AGG | + | chr4.4:53379596-53379615 | MS.gene027416:intron | 10.0% |
| !! | TATGAATATAAATTTATAAG+AGG | + | chr4.4:53380555-53380574 | MS.gene027416:intron | 10.0% |
| !! | TGTTTAATATTATATATGAA+GGG | + | chr4.4:53379597-53379616 | MS.gene027416:intron | 10.0% |
| !!! | ATTTTTAATTTGATGATTTT+AGG | + | chr4.4:53379548-53379567 | MS.gene027416:intron | 10.0% |
| !! | ATTCATGATCAATTTAATTA+TGG | + | chr4.4:53381254-53381273 | MS.gene027416:intron | 15.0% |
| !! | CATATACTATAAAGTTAAAT+TGG | - | chr4.4:53380782-53380801 | None:intergenic | 15.0% |
| !! | GTTTAATATTATATATGAAG+GGG | + | chr4.4:53379598-53379617 | MS.gene027416:intron | 15.0% |
| !! | GTTTGTAAATAAATGATTAT+GGG | - | chr4.4:53381646-53381665 | None:intergenic | 15.0% |
| !! | TCAATGTTTATCTTAAAATA+TGG | - | chr4.4:53380629-53380648 | None:intergenic | 15.0% |
| !! | TGTTTAATAATCATAATCAT+AGG | - | chr4.4:53380840-53380859 | None:intergenic | 15.0% |
| !! | TGTTTGTAAATAAATGATTA+TGG | - | chr4.4:53381647-53381666 | None:intergenic | 15.0% |
| !! | TTAAGAATGAAAAAATGATT+CGG | - | chr4.4:53380472-53380491 | None:intergenic | 15.0% |
| !! | AAATTAGTAATAGTGTCAAT+AGG | - | chr4.4:53380977-53380996 | None:intergenic | 20.0% |
| !! | ACTATTACTAATTTCTTTGT+AGG | + | chr4.4:53380983-53381002 | MS.gene027416:intron | 20.0% |
| !! | CGATCTAATAATTATTAATG+TGG | - | chr4.4:53381399-53381418 | None:intergenic | 20.0% |
| !! | CTATTACTAATTTCTTTGTA+GGG | + | chr4.4:53380984-53381003 | MS.gene027416:intron | 20.0% |
| !! | TAAATAAATGATTATGGGTT+GGG | - | chr4.4:53381641-53381660 | None:intergenic | 20.0% |
| !! | TTAAAAATTATTAGTTGTGC+CGG | + | chr4.4:53379270-53379289 | MS.gene027416:intron | 20.0% |
| !! | TTAAGTGTAATTACAAGTTT+CGG | - | chr4.4:53379238-53379257 | None:intergenic | 20.0% |
| !! | TTTCTGATGTCAATTATATT+TGG | + | chr4.4:53379904-53379923 | MS.gene027416:intron | 20.0% |
| !!! | AATCAGGTAACATATTATTT+TGG | + | chr4.4:53380024-53380043 | MS.gene027416:intron | 20.0% |
| !!! | CAATCTTCTAAAAATTAAGA+TGG | - | chr4.4:53380286-53380305 | None:intergenic | 20.0% |
| !!! | CACTTTTGATTAAAATTCAA+TGG | - | chr4.4:53380077-53380096 | None:intergenic | 20.0% |
| !!! | GAAAAACCAAATTTGAAATA+TGG | - | chr4.4:53381434-53381453 | None:intergenic | 20.0% |
| !!! | TGACTTTTGTCAAAATATTA+TGG | + | chr4.4:53381209-53381228 | MS.gene027416:intron | 20.0% |
| ! | AAACAGGTAATTCTCAAATT+CGG | + | chr4.4:53379709-53379728 | MS.gene027416:intron | 25.0% |
| ! | AAATCAAATGGACAAAACAT+TGG | + | chr4.4:53379472-53379491 | MS.gene027416:CDS | 25.0% |
| ! | AACGATCCATATTTCAAATT+TGG | + | chr4.4:53381425-53381444 | MS.gene027416:intron | 25.0% |
| ! | AATATTATATATGAAGGGGA+TGG | + | chr4.4:53379602-53379621 | MS.gene027416:intron | 25.0% |
| ! | ACATGTAAGACTAATCAATT+TGG | + | chr4.4:53380722-53380741 | MS.gene027416:intron | 25.0% |
| ! | CATTTGAACATTGAATTAAC+AGG | + | chr4.4:53381726-53381745 | MS.gene027416:intron | 25.0% |
| ! | CTGAAATAAAACCAAACAAT+TGG | - | chr4.4:53379970-53379989 | None:intergenic | 25.0% |
| ! | GTAAATAAATGATTATGGGT+TGG | - | chr4.4:53381642-53381661 | None:intergenic | 25.0% |
| ! | TAGGAATGACAAAACAATAA+AGG | - | chr4.4:53380821-53380840 | None:intergenic | 25.0% |
| ! | TCATATACTTACCAAAAAAC+TGG | - | chr4.4:53379132-53379151 | None:intergenic | 25.0% |
| ! | TTATTTACCAATTTGGTCAA+TGG | - | chr4.4:53381321-53381340 | None:intergenic | 25.0% |
| !! | AAATGAATTGGATACTGATT+TGG | + | chr4.4:53379061-53379080 | MS.gene027416:CDS | 25.0% |
| !! | AATGTTTTGTCCATTTGATT+TGG | - | chr4.4:53379473-53379492 | None:intergenic | 25.0% |
| !! | TATTCAGCTTTTCTCAATAA+AGG | - | chr4.4:53380755-53380774 | None:intergenic | 25.0% |
| !! | TCAGACTTTTGTCTAAAAAA+TGG | + | chr4.4:53378819-53378838 | MS.gene027416:CDS | 25.0% |
| !! | TGTTTTTCACACAAATGAAT+TGG | + | chr4.4:53379049-53379068 | MS.gene027416:CDS | 25.0% |
| !!! | AAAAACTGGTTTTTCCAATT+TGG | - | chr4.4:53379118-53379137 | None:intergenic | 25.0% |
| !!! | AATTGGAAAAACCAGTTTTT+TGG | + | chr4.4:53379118-53379137 | MS.gene027416:CDS | 25.0% |
| !!! | TAACAACGTTTTATTCCAAA+AGG | + | chr4.4:53380668-53380687 | MS.gene027416:intron | 25.0% |
| !!! | TAGAGTGTTATTTACCAATT+TGG | - | chr4.4:53381328-53381347 | None:intergenic | 25.0% |
| !!! | TCAATCTTCATCTTTTAAGT+TGG | + | chr4.4:53380580-53380599 | MS.gene027416:intron | 25.0% |
| ACGTATATCCTATTGTATCT+GGG | + | chr4.4:53379508-53379527 | MS.gene027416:CDS | 30.0% | |
| AGGTAACGTGTAAAGAAAAT+AGG | - | chr4.4:53380957-53380976 | None:intergenic | 30.0% | |
| AGTAGTCATTAGACTAAGAT+TGG | - | chr4.4:53381485-53381504 | None:intergenic | 30.0% | |
| ATATTTCCCACAATTATTCG+GGG | - | chr4.4:53379857-53379876 | None:intergenic | 30.0% | |
| CAAATTTGTGGTATATGCAT+GGG | - | chr4.4:53381098-53381117 | None:intergenic | 30.0% | |
| CGATATTTCCCACAATTATT+CGG | - | chr4.4:53379859-53379878 | None:intergenic | 30.0% | |
| CTAAAAAAGGACCAAATTTG+TGG | - | chr4.4:53381110-53381129 | None:intergenic | 30.0% | |
| CTCTAAATTCGTTGTATTCA+CGG | - | chr4.4:53380258-53380277 | None:intergenic | 30.0% | |
| CTGAATGAAATCATCAAACT+TGG | - | chr4.4:53380146-53380165 | None:intergenic | 30.0% | |
| GAAGAATCATTCCAATTGTT+TGG | + | chr4.4:53379956-53379975 | MS.gene027416:intron | 30.0% | |
| GATATTTCCCACAATTATTC+GGG | - | chr4.4:53379858-53379877 | None:intergenic | 30.0% | |
| GGTAACGTGTAAAGAAAATA+GGG | - | chr4.4:53380956-53380975 | None:intergenic | 30.0% | |
| GTAACGTGTAAAGAAAATAG+GGG | - | chr4.4:53380955-53380974 | None:intergenic | 30.0% | |
| TCATTTGTGTGAAAAACAGA+TGG | - | chr4.4:53379047-53379066 | None:intergenic | 30.0% | |
| TCTAATTGGAACACTATATG+CGG | - | chr4.4:53381034-53381053 | None:intergenic | 30.0% | |
| TTGTTGAAAAAATGTGTTGC+AGG | + | chr4.4:53379397-53379416 | MS.gene027416:intron | 30.0% | |
| ! | GTCTTACATGTAGATTTTGT+AGG | - | chr4.4:53380713-53380732 | None:intergenic | 30.0% |
| ! | TAGATTTTGTAGGCTTCTTA+TGG | - | chr4.4:53380703-53380722 | None:intergenic | 30.0% |
| ! | TTATGGAATTGAACTCCTTT+TGG | - | chr4.4:53380686-53380705 | None:intergenic | 30.0% |
| ! | TTGATGATCATTGATCCTAA+GGG | + | chr4.4:53381604-53381623 | MS.gene027416:intron | 30.0% |
| ! | TTTGATGATCATTGATCCTA+AGG | + | chr4.4:53381603-53381622 | MS.gene027416:intron | 30.0% |
| !! | ACTGCTTATAATGGATTATG+GGG | - | chr4.4:53381574-53381593 | None:intergenic | 30.0% |
| !! | CTTTCTAGTTAGTGTATGTT+TGG | + | chr4.4:53380215-53380234 | MS.gene027416:intron | 30.0% |
| !! | GACTGCTTATAATGGATTAT+GGG | - | chr4.4:53381575-53381594 | None:intergenic | 30.0% |
| !! | TCACTCAAAATTAGCTTGTT+GGG | + | chr4.4:53379086-53379105 | MS.gene027416:CDS | 30.0% |
| !! | TGACTGCTTATAATGGATTA+TGG | - | chr4.4:53381576-53381595 | None:intergenic | 30.0% |
| !! | TTCACTCAAAATTAGCTTGT+TGG | + | chr4.4:53379085-53379104 | MS.gene027416:CDS | 30.0% |
| AAGATTGAAAATCCGTCTTG+AGG | + | chr4.4:53380299-53380318 | MS.gene027416:intron | 35.0% | |
| AAGGGATTGATAGGATTCTT+AGG | + | chr4.4:53380911-53380930 | MS.gene027416:intron | 35.0% | |
| ACATGCACATGCACTAAAAA+AGG | - | chr4.4:53381123-53381142 | None:intergenic | 35.0% | |
| ATGGTCCATTGCATATCAAT+AGG | - | chr4.4:53380172-53380191 | None:intergenic | 35.0% | |
| CAATGTCAATTCAGGTGAAA+GGG | + | chr4.4:53380893-53380912 | MS.gene027416:intron | 35.0% | |
| CACGTATATCCTATTGTATC+TGG | + | chr4.4:53379507-53379526 | MS.gene027416:CDS | 35.0% | |
| CCAAATTTGTGGTATATGCA+TGG | - | chr4.4:53381099-53381118 | None:intergenic | 35.0% | |
| CCATGCATATACCACAAATT+TGG | + | chr4.4:53381096-53381115 | MS.gene027416:intron | 35.0% | |
| GATTATACCTACAACCTTAC+AGG | - | chr4.4:53380607-53380626 | None:intergenic | 35.0% | |
| GTCTCACATTGAATGAGATA+AGG | + | chr4.4:53380532-53380551 | MS.gene027416:intron | 35.0% | |
| GTGAAATCCATTGACCAAAT+TGG | + | chr4.4:53381311-53381330 | MS.gene027416:intron | 35.0% | |
| GTGGAAAGGAATCTAAATGT+TGG | + | chr4.4:53381868-53381887 | MS.gene027416:CDS | 35.0% | |
| TAACTACATTAGTCCGATCT+CGG | - | chr4.4:53379770-53379789 | None:intergenic | 35.0% | |
| TATTTCCCACAATTATTCGG+GGG | - | chr4.4:53379856-53379875 | None:intergenic | 35.0% | |
| TCCTGATTTCACTAAAAACG+CGG | - | chr4.4:53380371-53380390 | None:intergenic | 35.0% | |
| TGCACTTGAAAAGAACAAAG+TGG | - | chr4.4:53381779-53381798 | None:intergenic | 35.0% | |
| TGGTCCATTGCATATCAATA+GGG | - | chr4.4:53380171-53380190 | None:intergenic | 35.0% | |
| TGTGTTCAATCTATGAAGCA+CGG | + | chr4.4:53379162-53379181 | MS.gene027416:intron | 35.0% | |
| TGTTGCAGGTGAAATATGTT+GGG | + | chr4.4:53379411-53379430 | MS.gene027416:intron | 35.0% | |
| TTAGTGTATGTTTGGTTGAG+CGG | + | chr4.4:53380223-53380242 | MS.gene027416:intron | 35.0% | |
| TTATTAATGTGGTGAGTGTG+TGG | - | chr4.4:53381388-53381407 | None:intergenic | 35.0% | |
| TTCAGTTGCAATGTCAATTC+AGG | + | chr4.4:53380885-53380904 | MS.gene027416:intron | 35.0% | |
| TTGTACTTCCCAGATACAAT+AGG | - | chr4.4:53379519-53379538 | None:intergenic | 35.0% | |
| ! | AGCAGGTGATTGATTCTAAT+TGG | - | chr4.4:53381048-53381067 | None:intergenic | 35.0% |
| ! | TATTGTATCTGGGAAGTACA+AGG | + | chr4.4:53379518-53379537 | MS.gene027416:CDS | 35.0% |
| ! | TTTTAGTGCATGTGCATGTT+TGG | + | chr4.4:53381124-53381143 | MS.gene027416:intron | 35.0% |
| !! | ACTGTTTGATTTTGATCCAC+CGG | + | chr4.4:53379819-53379838 | MS.gene027416:intron | 35.0% |
| !! | CATGTACTGACTGCTTATAA+TGG | - | chr4.4:53381583-53381602 | None:intergenic | 35.0% |
| !! | TAAATGATTATGGGTTGGGT+AGG | - | chr4.4:53381637-53381656 | None:intergenic | 35.0% |
| !!! | TCTTTTAAGTTGGTCCTGTA+AGG | + | chr4.4:53380590-53380609 | MS.gene027416:intron | 35.0% |
| !!! | TGGTTTTATTTCAGTGTCCT+GGG | + | chr4.4:53379976-53379995 | MS.gene027416:intron | 35.0% |
| !!! | TTGGTTTTATTTCAGTGTCC+TGG | + | chr4.4:53379975-53379994 | MS.gene027416:intron | 35.0% |
| AACTTGGTTCCTATCAACAC+CGG | - | chr4.4:53380130-53380149 | None:intergenic | 40.0% | |
| ACAGGCAAGAACATATGCAA+AGG | + | chr4.4:53381744-53381763 | MS.gene027416:intron | 40.0% | |
| AGAAGCAAGGAAATGGAATC+AGG | + | chr4.4:53380008-53380027 | MS.gene027416:CDS | 40.0% | |
| AGCTCCCTATTGATATGCAA+TGG | + | chr4.4:53380164-53380183 | MS.gene027416:CDS | 40.0% | |
| ATCACCTGCTTATAGCATAG+TGG | + | chr4.4:53381058-53381077 | MS.gene027416:intron | 40.0% | |
| ATGTACCCCCGAATAATTGT+GGG | + | chr4.4:53379848-53379867 | MS.gene027416:intron | 40.0% | |
| ATTGTTGTAGACGGCAATTC+CGG | + | chr4.4:53380108-53380127 | MS.gene027416:intron | 40.0% | |
| CAAAACTCTTCGACTTACCT+TGG | + | chr4.4:53381842-53381861 | MS.gene027416:CDS | 40.0% | |
| CAAGTCGATGCACATTAAAC+AGG | + | chr4.4:53379693-53379712 | MS.gene027416:CDS | 40.0% | |
| CACATATACCAGACACAACA+CGG | - | chr4.4:53379307-53379326 | None:intergenic | 40.0% | |
| GAGGAAAGGACCAAATCAAA+TGG | + | chr4.4:53379460-53379479 | MS.gene027416:CDS | 40.0% | |
| GATTCGGCGTTTGTTTGAAT+TGG | - | chr4.4:53380456-53380475 | None:intergenic | 40.0% | |
| GCAATGTCAATTCAGGTGAA+AGG | + | chr4.4:53380892-53380911 | MS.gene027416:intron | 40.0% | |
| GGTACAAAGAAGCAAGGAAA+TGG | + | chr4.4:53380001-53380020 | MS.gene027416:CDS | 40.0% | |
| GTGTCTGGTATATGTGTTCA+AGG | + | chr4.4:53379311-53379330 | MS.gene027416:intron | 40.0% | |
| GTGTGCTTGATTGTTGTAGA+CGG | + | chr4.4:53380099-53380118 | MS.gene027416:intron | 40.0% | |
| GTGTTGCAGGTGAAATATGT+TGG | + | chr4.4:53379410-53379429 | MS.gene027416:intron | 40.0% | |
| GTTGGATATTAGACCGAGAT+CGG | + | chr4.4:53379754-53379773 | MS.gene027416:intron | 40.0% | |
| GTTGGGAATGAAAAAGAGCA+GGG | + | chr4.4:53379428-53379447 | MS.gene027416:CDS | 40.0% | |
| TATGTACCCCCGAATAATTG+TGG | + | chr4.4:53379847-53379866 | MS.gene027416:intron | 40.0% | |
| TGTTGGGAATGAAAAAGAGC+AGG | + | chr4.4:53379427-53379446 | MS.gene027416:CDS | 40.0% | |
| TTCAGGTGAAAGGGATTGAT+AGG | + | chr4.4:53380902-53380921 | MS.gene027416:intron | 40.0% | |
| TTGTTGGGTGATTGCCAAAT+TGG | + | chr4.4:53379101-53379120 | MS.gene027416:CDS | 40.0% | |
| TTTATTTCAGTGTCCTGGGA+TGG | + | chr4.4:53379980-53379999 | MS.gene027416:intron | 40.0% | |
| ! | GACAAAACATTGGTTGTGAG+TGG | + | chr4.4:53379482-53379501 | MS.gene027416:CDS | 40.0% |
| !! | ACATAGATGTCGATTTGCTC+TGG | + | chr4.4:53381354-53381373 | MS.gene027416:intron | 40.0% |
| !! | ATTGTGGGAAATATCGACTC+TGG | + | chr4.4:53379863-53379882 | MS.gene027416:intron | 40.0% |
| !! | TATTAGTTGTGCCGGCTTAT+CGG | + | chr4.4:53379278-53379297 | MS.gene027416:intron | 40.0% |
| !! | TTGTGGGAAATATCGACTCT+GGG | + | chr4.4:53379864-53379883 | MS.gene027416:intron | 40.0% |
| !!! | TCCGCGTTTTTAGTGAAATC+AGG | + | chr4.4:53380367-53380386 | MS.gene027416:intron | 40.0% |
| AATGGCATGTAAGGACTCAG+TGG | + | chr4.4:53379646-53379665 | MS.gene027416:CDS | 45.0% | |
| ACTGAGTCCTTACATGCCAT+TGG | - | chr4.4:53379647-53379666 | None:intergenic | 45.0% | |
| ACTTACCTTGGACAGTGGAA+AGG | + | chr4.4:53381854-53381873 | MS.gene027416:CDS | 45.0% | |
| AGATTCCTTTCCACTGTCCA+AGG | - | chr4.4:53381862-53381881 | None:intergenic | 45.0% | |
| AGTTGGTCCTGTAAGGTTGT+AGG | + | chr4.4:53380597-53380616 | MS.gene027416:intron | 45.0% | |
| ATATGCATGGGATCCACAAG+TGG | - | chr4.4:53381086-53381105 | None:intergenic | 45.0% | |
| ATCAGAAGACCAGCTTCCAA+TGG | + | chr4.4:53379628-53379647 | MS.gene027416:CDS | 45.0% | |
| GAATGAAAAAGAGCAGGGAG+TGG | + | chr4.4:53379433-53379452 | MS.gene027416:CDS | 45.0% | |
| GAGATGGCAATGCTGAATGT+GGG | - | chr4.4:53378980-53378999 | None:intergenic | 45.0% | |
| GAGCTCGAAGAATACATCTC+CGG | - | chr4.4:53378893-53378912 | None:intergenic | 45.0% | |
| TGGGATGGTACAAAGAAGCA+AGG | + | chr4.4:53379995-53380014 | MS.gene027416:CDS | 45.0% | |
| TGGTTGCAGAGAAGTTTCGA+CGG | - | chr4.4:53379027-53379046 | None:intergenic | 45.0% | |
| TTGCTTCTTTGTACCATCCC+AGG | - | chr4.4:53379996-53380015 | None:intergenic | 45.0% | |
| !! | GTCGTGATTTTGACCTCATG+TGG | - | chr4.4:53380342-53380361 | None:intergenic | 45.0% |
| !! | TGTGTAGCGTTGATGGTAGT+TGG | + | chr4.4:53379736-53379755 | MS.gene027416:intron | 45.0% |
| !! | AAATTAAAATCATATAAATA+TGG | + | chr4.4:53381547-53381566 | MS.gene027416:intron | 5.0% |
| AGCGATTACCTCACTAGCGA+TGG | - | chr4.4:53380191-53380210 | None:intergenic | 50.0% | |
| ATCGGGACACGACTAATCTG+AGG | - | chr4.4:53379193-53379212 | None:intergenic | 50.0% | |
| ATCTCCGGAGCAACGATACA+CGG | - | chr4.4:53378878-53378897 | None:intergenic | 50.0% | |
| ATTCAGCATTGCCATCTCCG+CGG | + | chr4.4:53378982-53379001 | MS.gene027416:CDS | 50.0% | |
| CCAGCTTCCAATGGCATGTA+AGG | + | chr4.4:53379637-53379656 | MS.gene027416:CDS | 50.0% | |
| CCTTACATGCCATTGGAAGC+TGG | - | chr4.4:53379640-53379659 | None:intergenic | 50.0% | |
| CTGTACGTAGCATTAGCACC+TGG | - | chr4.4:53378948-53378967 | None:intergenic | 50.0% | |
| CTTCGACTTACCTTGGACAG+TGG | + | chr4.4:53381849-53381868 | MS.gene027416:CDS | 50.0% | |
| GAAAATCCGTCTTGAGGCTG+TGG | + | chr4.4:53380305-53380324 | MS.gene027416:intron | 50.0% | |
| GAATTCACGCATTCACGCAG+AGG | - | chr4.4:53381522-53381541 | None:intergenic | 50.0% | |
| GCGTGAATGCGTGAATTCAC+TGG | + | chr4.4:53381524-53381543 | MS.gene027416:intron | 50.0% | |
| GGAGATGGCAATGCTGAATG+TGG | - | chr4.4:53378981-53379000 | None:intergenic | 50.0% | |
| GGCACCACTATGCTATAAGC+AGG | - | chr4.4:53381065-53381084 | None:intergenic | 50.0% | |
| TTGCAGAGAAGTTTCGACGG+TGG | - | chr4.4:53379024-53379043 | None:intergenic | 50.0% | |
| ! | CGGAATGTGTGTAGCGTTGA+TGG | + | chr4.4:53379729-53379748 | MS.gene027416:intron | 50.0% |
| ! | GATTAGTCGTGTCCCGATGT+CGG | + | chr4.4:53379195-53379214 | MS.gene027416:intron | 50.0% |
| ! | TTCGGGGGTACATAAGTGAC+CGG | - | chr4.4:53379841-53379860 | None:intergenic | 50.0% |
| !! | ACGGCAATTCCGGTGTTGAT+AGG | + | chr4.4:53380118-53380137 | MS.gene027416:CDS | 50.0% |
| !! | TAGCATAGTGGTGCCACTTG+TGG | + | chr4.4:53381070-53381089 | MS.gene027416:intron | 50.0% |
| AAGAGCAGGGAGTGGAACAG+AGG | + | chr4.4:53379441-53379460 | MS.gene027416:CDS | 55.0% | |
| AATCCGTCTTGAGGCTGTGG+CGG | + | chr4.4:53380308-53380327 | MS.gene027416:intron | 55.0% | |
| ACAGCCGTGTATCGTTGCTC+CGG | + | chr4.4:53378871-53378890 | MS.gene027416:CDS | 55.0% | |
| CAACACGGACACCGATAAGC+CGG | - | chr4.4:53379292-53379311 | None:intergenic | 55.0% | |
| CAGGGAGTGGAACAGAGGAA+AGG | + | chr4.4:53379446-53379465 | MS.gene027416:CDS | 55.0% | |
| GCAATGGACCATCGCTAGTG+AGG | + | chr4.4:53380180-53380199 | MS.gene027416:CDS | 55.0% | |
| TGACACGACGTGTCCGACAT+CGG | - | chr4.4:53379211-53379230 | None:intergenic | 55.0% | |
| TGGGTAGGCTTGTCTCCCTT+AGG | - | chr4.4:53381622-53381641 | None:intergenic | 55.0% | |
| TTCAGCATTGCCATCTCCGC+GGG | + | chr4.4:53378983-53379002 | MS.gene027416:CDS | 55.0% | |
| ! | ATCGGTGTCCGTGTTGTGTC+TGG | + | chr4.4:53379296-53379315 | MS.gene027416:intron | 55.0% |
| GAATCCAACAGCGAAGCCCG+CGG | - | chr4.4:53379002-53379021 | None:intergenic | 60.0% | |
| GACACGACGTGTCCGACATC+GGG | - | chr4.4:53379210-53379229 | None:intergenic | 60.0% | |
| GGCGGTGGGAATTCCACATG+AGG | + | chr4.4:53380326-53380345 | MS.gene027416:intron | 60.0% | |
| TGCCTGAGCAGGCAAGCAGT+CGG | - | chr4.4:53378920-53378939 | None:intergenic | 60.0% | |
| ! | GGGGGTACATAAGTGACCGG+TGG | - | chr4.4:53379838-53379857 | None:intergenic | 60.0% |
| AACAGCGAAGCCCGCGGAGA+TGG | - | chr4.4:53378996-53379015 | None:intergenic | 65.0% | |
| AAGCCTCCTTCGCAGCGCGA+AGG | - | chr4.4:53378850-53378869 | None:intergenic | 65.0% | |
| ACCTGGCTGCTTGCCTGAGC+AGG | - | chr4.4:53378931-53378950 | None:intergenic | 65.0% | |
| ACTCCTTCGCGCTGCGAAGG+AGG | + | chr4.4:53378844-53378863 | MS.gene027416:CDS | 65.0% | |
| ATCTCCGCGGGCTTCGCTGT+TGG | + | chr4.4:53378995-53379014 | MS.gene027416:CDS | 65.0% | |
| CCACCGCCACAGCCTCAAGA+CGG | - | chr4.4:53380314-53380333 | None:intergenic | 65.0% | |
| CGTCTTGAGGCTGTGGCGGT+GGG | + | chr4.4:53380312-53380331 | MS.gene027416:intron | 65.0% | |
| GTCACTCCTTCGCGCTGCGA+AGG | + | chr4.4:53378841-53378860 | MS.gene027416:CDS | 65.0% | |
| ! | CACCGACTGCTTGCCTGCTC+AGG | + | chr4.4:53378915-53378934 | MS.gene027416:CDS | 65.0% |
| CCGTCTTGAGGCTGTGGCGG+TGG | + | chr4.4:53380311-53380330 | MS.gene027416:intron | 70.0% | |
| GCCTGCTCAGGCAAGCAGCC+AGG | + | chr4.4:53378927-53378946 | MS.gene027416:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 53378816 | 53381912 | 53378816 | ID=MS.gene027416 |
| chr4.4 | mRNA | 53378816 | 53381912 | 53378816 | ID=MS.gene027416.t1;Parent=MS.gene027416 |
| chr4.4 | exon | 53378816 | 53379139 | 53378816 | ID=MS.gene027416.t1.exon1;Parent=MS.gene027416.t1 |
| chr4.4 | CDS | 53378816 | 53379139 | 53378816 | ID=cds.MS.gene027416.t1;Parent=MS.gene027416.t1 |
| chr4.4 | exon | 53379419 | 53379539 | 53379419 | ID=MS.gene027416.t1.exon2;Parent=MS.gene027416.t1 |
| chr4.4 | CDS | 53379419 | 53379539 | 53379419 | ID=cds.MS.gene027416.t1;Parent=MS.gene027416.t1 |
| chr4.4 | exon | 53379618 | 53379714 | 53379618 | ID=MS.gene027416.t1.exon3;Parent=MS.gene027416.t1 |
| chr4.4 | CDS | 53379618 | 53379714 | 53379618 | ID=cds.MS.gene027416.t1;Parent=MS.gene027416.t1 |
| chr4.4 | exon | 53379990 | 53380029 | 53379990 | ID=MS.gene027416.t1.exon4;Parent=MS.gene027416.t1 |
| chr4.4 | CDS | 53379990 | 53380029 | 53379990 | ID=cds.MS.gene027416.t1;Parent=MS.gene027416.t1 |
| chr4.4 | exon | 53380118 | 53380201 | 53380118 | ID=MS.gene027416.t1.exon5;Parent=MS.gene027416.t1 |
| chr4.4 | CDS | 53380118 | 53380201 | 53380118 | ID=cds.MS.gene027416.t1;Parent=MS.gene027416.t1 |
| chr4.4 | exon | 53381748 | 53381912 | 53381748 | ID=MS.gene027416.t1.exon6;Parent=MS.gene027416.t1 |
| chr4.4 | CDS | 53381748 | 53381912 | 53381748 | ID=cds.MS.gene027416.t1;Parent=MS.gene027416.t1 |
| Gene Sequence |
| Protein sequence |
