AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028621

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028621.t1 MTR_2g096180 97.952 537 11 0 1 537 73 609 0.0 1063
MS.gene028621.t1 MTR_2g096180 97.952 537 11 0 1 537 24 560 0.0 1063
MS.gene028621.t1 MTR_2g096180 91.478 575 11 1 1 537 24 598 0.0 1045
MS.gene028621.t1 MTR_2g096180 91.478 575 11 1 1 537 73 647 0.0 1045
MS.gene028621.t1 MTR_4g061843 72.603 584 115 8 1 542 74 654 0.0 727
MS.gene028621.t1 MTR_4g061843 72.603 584 115 8 1 542 15 595 0.0 725
MS.gene028621.t1 MTR_4g061843 67.925 583 111 9 1 542 74 621 0.0 654
MS.gene028621.t1 MTR_4g061843 74.138 522 92 8 1 482 74 592 0.0 633
MS.gene028621.t1 MTR_4g061960 76.292 329 71 5 219 542 4 330 2.59e-163 468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028621.t1 AT1G07705 70.588 544 136 9 1 537 74 600 0.0 696
MS.gene028621.t1 AT1G07705 71.516 488 117 8 1 481 74 546 0.0 610
MS.gene028621.t1 AT5G59710 59.792 577 146 13 1 537 73 603 0.0 579
MS.gene028621.t1 AT5G59710 59.792 577 146 13 1 537 73 603 0.0 579
MS.gene028621.t1 AT5G59710 60.536 522 122 12 1 482 73 550 2.26e-176 509

Find 139 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCATTAAGTTGTTCTTTC+TGG 0.035131 2.3:+6353600 None:intergenic
GGACCTGCATTTCCCAAAAT+TGG 0.156530 2.3:+6355109 None:intergenic
AATTCTCCAAATACTGTTTC+TGG 0.167736 2.3:-6353050 MS.gene028621:CDS
ATTGGGAGTATCCCCAATTT+TGG 0.178580 2.3:-6355122 MS.gene028621:CDS
GCTTCACGTCTAAATTTAAA+TGG 0.188768 2.3:-6355001 MS.gene028621:CDS
GAAAATCTTCACAAGACTTT+TGG 0.198132 2.3:-6352771 MS.gene028621:CDS
AGGTCTGCTGGTTTCAGTTT+GGG 0.222410 2.3:-6353426 MS.gene028621:CDS
ACATTTGCTGAAGGCGAAAC+TGG 0.257273 2.3:+6352973 None:intergenic
ATATAGCTGTGCTTCATCTT+TGG 0.260832 2.3:+6352426 None:intergenic
TTCAGGCTCTTTACGAAAAC+AGG 0.265173 2.3:-6354187 MS.gene028621:intron
AGTACATCACTTGAATTCTA+TGG 0.279511 2.3:-6354393 MS.gene028621:CDS
TCTGGAGGATTGTCCATTCC+TGG 0.287243 2.3:-6355028 MS.gene028621:CDS
TATAGCTGTGCTTCATCTTT+GGG 0.291914 2.3:+6352427 None:intergenic
TCCGCGGATAACAAGTTCTA+TGG 0.295779 2.3:-6355089 MS.gene028621:CDS
GAGGTCTGCTGGTTTCAGTT+TGG 0.299623 2.3:-6353427 MS.gene028621:CDS
CTGCAGATGGGGAGGTCTGC+TGG 0.305802 2.3:-6353438 MS.gene028621:intron
CCTCAGGTAATTTCAATGTT+AGG 0.314958 2.3:-6354467 MS.gene028621:CDS
GACCTCCTGGCATTGGATTA+AGG 0.320047 2.3:-6353079 MS.gene028621:CDS
CCTGATCCATTTGGTCTGCT+TGG 0.327445 2.3:-6352888 MS.gene028621:CDS
GGAAGCTCTCATGGACATTC+AGG 0.340474 2.3:-6355277 MS.gene028621:CDS
GACCTGCATTTCCCAAAATT+GGG 0.351945 2.3:+6355110 None:intergenic
CCCGTACCAGAAACAGTATT+TGG 0.373729 2.3:+6353044 None:intergenic
TCTATGGGAAACATGGTTGC+TGG 0.374454 2.3:-6355073 MS.gene028621:CDS
ACAAGTCGTCCTAGTTCTGC+TGG 0.377291 2.3:-6354305 MS.gene028621:CDS
ACAGTATTTGGAGAATTTAG+AGG 0.382920 2.3:+6353056 None:intergenic
AACCAGTCCTTTAGAGATCA+TGG 0.383659 2.3:-6352942 MS.gene028621:CDS
TCTGGTGTTGTTGATACTGC+TGG 0.384992 2.3:+6353003 None:intergenic
CAATCTGCTCCTGATCCATT+TGG 0.393312 2.3:-6352897 MS.gene028621:CDS
GGCGAAACTGGGATTGGTTC+TGG 0.410215 2.3:+6352985 None:intergenic
TTGGCTTGTTAAGTGTAATC+AGG 0.413858 2.3:-6352869 MS.gene028621:CDS
ATACACAGTACCTTTGTATC+CGG 0.414552 2.3:+6354098 None:intergenic
TTGACAAGCGGCTCCATGTT+GGG 0.416934 2.3:+6352042 None:intergenic
GATCTGACATCTCTTGCTCT+TGG 0.425564 2.3:-6352834 MS.gene028621:CDS
TTAAATGGAAACAGCGGATC+TGG 0.427099 2.3:-6354986 MS.gene028621:CDS
TCCAAATACTGTTTCTGGTA+CGG 0.434596 2.3:-6353045 MS.gene028621:CDS
AGTGATGTACTGCTTGCATA+TGG 0.441539 2.3:+6354405 None:intergenic
CTATCTCATGGAAGCTCTCA+TGG 0.446529 2.3:-6355286 MS.gene028621:CDS
CCAAATACTGTTTCTGGTAC+GGG 0.454336 2.3:-6353044 MS.gene028621:CDS
TATTTGTACACAGGTGGTAA+TGG 0.462985 2.3:-6353644 MS.gene028621:intron
CTGGAGGATTGTCCATTCCT+GGG 0.463577 2.3:-6355027 MS.gene028621:CDS
TGGTAATGGAGAATTTACTA+TGG 0.464045 2.3:-6353630 MS.gene028621:CDS
GTACATCACTTGAATTCTAT+GGG 0.464321 2.3:-6354392 MS.gene028621:CDS
ACGATAAATAACATGCCAAC+TGG 0.465876 2.3:-6355525 None:intergenic
CCTTTGTATCCGGGTAAAGC+TGG 0.469299 2.3:+6354108 None:intergenic
AACAAGCCAAGCAGACCAAA+TGG 0.472910 2.3:+6352882 None:intergenic
TGCTGGATGAGTTGATCATA+TGG 0.474187 2.3:+6353020 None:intergenic
TGAAAGTGGACCTCCAGCAC+TGG 0.474339 2.3:+6354433 None:intergenic
TTGGTCTGAGGAACCAGCTA+AGG 0.475047 2.3:-6352742 MS.gene028621:CDS
TGCATATGGCTTTGTGAAAG+TGG 0.479067 2.3:+6354419 None:intergenic
CGGACAGTTTCGAAAGTGCT+TGG 0.479912 2.3:+6351979 None:intergenic
ACTAGCGGACCTCCTGGCAT+TGG 0.481858 2.3:-6353086 MS.gene028621:CDS
GGAAATTCTTATCCCAGTGC+TGG 0.482050 2.3:-6354446 MS.gene028621:CDS
GCTGAAGGCGAAACTGGGAT+TGG 0.488397 2.3:+6352979 None:intergenic
GTCAAAGGGTGAACTGTCAC+TGG 0.496842 2.3:+6354349 None:intergenic
AATCAAGATCTTCATATGCA+TGG 0.500359 2.3:-6353321 MS.gene028621:CDS
TCCCATGATCTCTAAAGGAC+TGG 0.500395 2.3:+6352940 None:intergenic
AGAGCAAGAGATGTCAGATC+AGG 0.506012 2.3:+6352837 None:intergenic
CCAAGCAGACCAAATGGATC+AGG 0.506331 2.3:+6352888 None:intergenic
CAAGTCGTCCTAGTTCTGCT+GGG 0.507862 2.3:-6354304 MS.gene028621:CDS
CTATGGGAAACATGGTTGCT+GGG 0.508419 2.3:-6355072 MS.gene028621:CDS
CTTCATCCCATGATCTCTAA+AGG 0.510038 2.3:+6352935 None:intergenic
AACATTGGGAGGCTAAGCTC+TGG 0.510948 2.3:-6355046 MS.gene028621:CDS
CCACTAGAAAGACTTGATGT+AGG 0.511491 2.3:+6355489 None:intergenic
GAATGTCTCACGTGTAGAGC+AGG 0.512959 2.3:+6352672 None:intergenic
AGAGGCCTTAATCCAATGCC+AGG 0.516836 2.3:+6353074 None:intergenic
CTCTCAGTTACAAACGAGGT+TGG 0.517466 2.3:-6352104 MS.gene028621:intron
TCATATTTGCAGCTATCTCA+TGG 0.519422 2.3:-6355298 MS.gene028621:intron
AACAGCGGATCTGGTGGCTT+AGG 0.522109 2.3:-6354977 MS.gene028621:CDS
GAAGGAGAATGCTGCTGTTG+AGG 0.523767 2.3:+6353381 None:intergenic
GTTTAGACTAGCGGACCTCC+TGG 0.528923 2.3:-6353092 MS.gene028621:intron
TCTTCCTTCTGCTCTGTCAC+AGG 0.529243 2.3:-6355448 MS.gene028621:intron
CATTTGCTGAAGGCGAAACT+GGG 0.529768 2.3:+6352974 None:intergenic
AAAACAAGCACATACGAAAG+AGG 0.534593 2.3:-6352021 MS.gene028621:CDS
CAAGCACTTTCGAAACTGTC+CGG 0.537041 2.3:-6351978 MS.gene028621:CDS
GGGAAGTCATTGAGGTCAAA+GGG 0.537865 2.3:+6354335 None:intergenic
ACGTGAAGCAAGCCCAGGAA+TGG 0.540879 2.3:+6355015 None:intergenic
TTTGACAAGCGGCTCCATGT+TGG 0.541017 2.3:+6352041 None:intergenic
TACACAGTACCTTTGTATCC+GGG 0.542891 2.3:+6354099 None:intergenic
GGAATCGATCTTACAACACT+CGG 0.543662 2.3:-6352813 MS.gene028621:CDS
AACTCTGGATCACCCTTAGC+TGG 0.543836 2.3:+6352729 None:intergenic
AGGGAAGTCATTGAGGTCAA+AGG 0.547739 2.3:+6354334 None:intergenic
ATCAAGATCTTCATATGCAT+GGG 0.548749 2.3:-6353320 MS.gene028621:CDS
TATTCTTTCTGCAGATGGGG+AGG 0.548953 2.3:-6353446 MS.gene028621:intron
AAAGTTATCTTAATGTTGAG+AGG 0.549263 2.3:-6351471 MS.gene028621:CDS
CATTGAAGCACACTAAACTC+TGG 0.549441 2.3:+6352714 None:intergenic
TCTGCTGGTTTCAGTTTGGG+AGG 0.553029 2.3:-6353423 MS.gene028621:CDS
TTAGCTGGTTCCTCAGACCA+AGG 0.553506 2.3:+6352744 None:intergenic
AAACTCTACGTATCATTCAC+AGG 0.554744 2.3:-6353277 MS.gene028621:intron
TTTAGACGTGAAGCAAGCCC+AGG 0.557274 2.3:+6355010 None:intergenic
TCTGGTGGCTTAGGCGTGCA+AGG 0.564669 2.3:-6354968 MS.gene028621:CDS
GAAGACTTTCCAGCTTTACC+CGG 0.566230 2.3:-6354117 MS.gene028621:CDS
TATGGGAAACATGGTTGCTG+GGG 0.570932 2.3:-6355071 MS.gene028621:CDS
AAGTCGTCCTAGTTCTGCTG+GGG 0.573436 2.3:-6354303 MS.gene028621:CDS
ATGGGAAACATGGTTGCTGG+GGG 0.575821 2.3:-6355070 MS.gene028621:CDS
CACTTTCGAAACTGTCCGGA+GGG 0.577137 2.3:-6351974 MS.gene028621:intron
TTAGCTGAGGGAAGTCATTG+AGG 0.578044 2.3:+6354327 None:intergenic
GAAAGTGGACCTCCAGCACT+GGG 0.582125 2.3:+6354434 None:intergenic
ACCAGTCCTTTAGAGATCAT+GGG 0.582172 2.3:-6352941 MS.gene028621:CDS
AACAAGTTCTATGGGAAACA+TGG 0.587430 2.3:-6355080 MS.gene028621:CDS
ACCTGCATTTCCCAAAATTG+GGG 0.588453 2.3:+6355111 None:intergenic
CACGCACCCAACTGTCCTTG+AGG 0.588710 2.3:+6354278 None:intergenic
CCGCGGATAACAAGTTCTAT+GGG 0.590377 2.3:-6355088 MS.gene028621:CDS
GGTTGTTGAACCGCTCCAGT+TGG 0.590721 2.3:+6355510 None:intergenic
ATTGGGAGGCTAAGCTCTGG+AGG 0.591058 2.3:-6355043 MS.gene028621:CDS
CCCATAGAACTTGTTATCCG+CGG 0.600667 2.3:+6355088 None:intergenic
AATTCTTATCCCAGTGCTGG+AGG 0.601555 2.3:-6354443 MS.gene028621:CDS
CCAGCTTTACCCGGATACAA+AGG 0.603206 2.3:-6354108 MS.gene028621:intron
TGGTCTGAGGAACCAGCTAA+GGG 0.603363 2.3:-6352741 MS.gene028621:CDS
GAATCGATCTTACAACACTC+GGG 0.607310 2.3:-6352812 MS.gene028621:CDS
AGTCGTCCTAGTTCTGCTGG+GGG 0.608355 2.3:-6354302 MS.gene028621:CDS
TCAGGAGTCAACAGTAGAGG+AGG 0.608682 2.3:-6355259 MS.gene028621:intron
CCTAACATTGAAATTACCTG+AGG 0.611277 2.3:+6354467 None:intergenic
CTCACGTGTAGAGCAGGAGG+TGG 0.612457 2.3:+6352678 None:intergenic
TTACAGCTGACATTTGCTGA+AGG 0.613808 2.3:+6352964 None:intergenic
AATGGAAACAGCGGATCTGG+TGG 0.615708 2.3:-6354983 MS.gene028621:CDS
CATTCAGGAGTCAACAGTAG+AGG 0.618435 2.3:-6355262 MS.gene028621:CDS
ACGCCGCTGTTACTGACAGA+AGG 0.622596 2.3:+6353363 None:intergenic
AAATAACATGCCAACTGGAG+CGG 0.626036 2.3:-6355520 None:intergenic
ATGAGTGGCGTGCTTCCACA+AGG 0.629918 2.3:-6354932 MS.gene028621:intron
CTAGGACGACTTGTTAGCTG+AGG 0.634920 2.3:+6354314 None:intergenic
TGTACCTGTGACAGAGCAGA+AGG 0.635690 2.3:+6355444 None:intergenic
CCTACATCAAGTCTTTCTAG+TGG 0.642177 2.3:-6355489 MS.gene028621:CDS
TCTCCTTCTGTCAGTAACAG+CGG 0.645378 2.3:-6353366 MS.gene028621:CDS
GTATATAAAAGTTCCCAACA+TGG 0.647657 2.3:-6352055 MS.gene028621:CDS
TGATACGTAGAGTTTGAAGA+CGG 0.649131 2.3:+6353285 None:intergenic
TCAGGCTCTTTACGAAAACA+GGG 0.653371 2.3:-6354186 MS.gene028621:intron
TGTCTCACGTGTAGAGCAGG+AGG 0.654072 2.3:+6352675 None:intergenic
GTCGTCCTAGTTCTGCTGGG+GGG 0.662242 2.3:-6354301 MS.gene028621:CDS
GGACAAAATCGATTGATGAG+TGG 0.665922 2.3:-6354947 MS.gene028621:CDS
ATCACAAAGAGCATCGCATG+TGG 0.668075 2.3:-6352077 MS.gene028621:CDS
GCACTTTCGAAACTGTCCGG+AGG 0.673166 2.3:-6351975 MS.gene028621:CDS
CTAAATTTAAATGGAAACAG+CGG 0.686707 2.3:-6354992 MS.gene028621:CDS
TAGGACGACTTGTTAGCTGA+GGG 0.692911 2.3:+6354315 None:intergenic
TGGGAAACATGGTTGCTGGG+GGG 0.692996 2.3:-6355069 MS.gene028621:CDS
GTTGCTCTCAGTTACAAACG+AGG 0.704716 2.3:-6352108 MS.gene028621:intron
TACATCACTTGAATTCTATG+GGG 0.705637 2.3:-6354391 MS.gene028621:CDS
GGCCTTAATCCAATGCCAGG+AGG 0.705806 2.3:+6353077 None:intergenic
TTGTGACTGCATCATTGACA+TGG 0.707974 2.3:+6353574 None:intergenic
AAGTGCTTGGATCAAAACAG+TGG 0.711615 2.3:+6351992 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATCCAATTATATAT+AGG - chr2.3:6352121-6352140 MS.gene028621:intron 10.0%
!! AACTAAAAAGTAAAAAATAA+GGG + chr2.3:6354353-6354372 None:intergenic 10.0%
!! ATAACAAAAAATAACAAAAA+AGG + chr2.3:6354608-6354627 None:intergenic 10.0%
!! TAACAAAAAATAACAAAAAA+GGG + chr2.3:6354607-6354626 None:intergenic 10.0%
!! TTTGTATATGATTAAAAATA+AGG + chr2.3:6354822-6354841 None:intergenic 10.0%
!!! TATATAATTGGATATTTTTT+AGG + chr2.3:6352120-6352139 None:intergenic 10.0%
!!! TGTATTATTTTCTTATTTTT+GGG - chr2.3:6352962-6352981 MS.gene028621:CDS 10.0%
!!! TTATTTTTTACTTTTTAGTT+GGG - chr2.3:6354353-6354372 MS.gene028621:CDS 10.0%
!!! TTGTATTATTTTCTTATTTT+TGG - chr2.3:6352961-6352980 MS.gene028621:CDS 10.0%
!!! TTTTGTTATTTTTTGTTATT+TGG - chr2.3:6354609-6354628 MS.gene028621:intron 10.0%
!! AAATATGATATATAGACAAA+TGG + chr2.3:6351662-6351681 None:intergenic 15.0%
!! ATGAATATAATTTATCATGA+GGG - chr2.3:6355232-6355251 MS.gene028621:intron 15.0%
!! CAACTAAAAAGTAAAAAATA+AGG + chr2.3:6354354-6354373 None:intergenic 15.0%
!! TCAAAACAAATAAAAGAAAA+TGG + chr2.3:6353117-6353136 None:intergenic 15.0%
!! TCATCTATATTTGTTTAATT+TGG - chr2.3:6352407-6352426 MS.gene028621:intron 15.0%
!!! AGATAACTTTATTTTTGTAT+AGG + chr2.3:6355491-6355510 None:intergenic 15.0%
!!! CTTATTTTTTACTTTTTAGT+TGG - chr2.3:6354352-6354371 MS.gene028621:CDS 15.0%
!!! GTATTATTTTCTTATTTTTG+GGG - chr2.3:6352963-6352982 MS.gene028621:CDS 15.0%
!!! TTTTACGTATAATTTATCTA+GGG - chr2.3:6352229-6352248 MS.gene028621:intron 15.0%
!! ACAAATATAGATGAATTTCT+AGG + chr2.3:6352401-6352420 None:intergenic 20.0%
!! ATAAAAAGATTTACACTGAA+GGG + chr2.3:6355210-6355229 None:intergenic 20.0%
!! ATAAGTAAAAAATTTCAGAG+TGG + chr2.3:6354756-6354775 None:intergenic 20.0%
!! ATATAACTACAATTCACATT+TGG + chr2.3:6355372-6355391 None:intergenic 20.0%
!! ATTGTAGTTATATTAGTAGA+CGG - chr2.3:6355379-6355398 MS.gene028621:intron 20.0%
!! CATGAATATAATTTATCATG+AGG - chr2.3:6355231-6355250 MS.gene028621:intron 20.0%
!! GAAGATAACCTATATATAAT+TGG + chr2.3:6352132-6352151 None:intergenic 20.0%
!! GTCAAAATATTTCGAATTTA+AGG + chr2.3:6354795-6354814 None:intergenic 20.0%
!! TAATGTAATCTATACATTTC+AGG - chr2.3:6352768-6352787 MS.gene028621:CDS 20.0%
!! TAATTTATCTAGGGATATAT+AGG - chr2.3:6352238-6352257 MS.gene028621:intron 20.0%
!! TATAACTACAATTCACATTT+GGG + chr2.3:6355371-6355390 None:intergenic 20.0%
!! TTATGATAATATTTGTACAC+AGG - chr2.3:6353319-6353338 MS.gene028621:CDS 20.0%
!! TTTCATTATTGAATCTTTGA+TGG - chr2.3:6353257-6353276 MS.gene028621:intron 20.0%
!!! ACATTATTCTTTTTTGTTGA+AGG + chr2.3:6352754-6352773 None:intergenic 20.0%
!!! CTTTTACGTATAATTTATCT+AGG - chr2.3:6352228-6352247 MS.gene028621:intron 20.0%
!!! TCTTGGAAAAACTTTTTAAT+TGG - chr2.3:6354671-6354690 MS.gene028621:intron 20.0%
!!! TTATTTTTGGGGTTATAAAA+GGG - chr2.3:6352974-6352993 MS.gene028621:CDS 20.0%
!!! TTCTAATCGATTATGAATTT+TGG - chr2.3:6353858-6353877 MS.gene028621:intron 20.0%
!!! TTTCTTTTATTTGTTTTGAC+AGG - chr2.3:6353118-6353137 MS.gene028621:intron 20.0%
!!! TTTTGTTTTTCAGTATGAAA+TGG - chr2.3:6355136-6355155 MS.gene028621:intron 20.0%
! AAAAAGTAAAAAATAAGGGC+AGG + chr2.3:6354349-6354368 None:intergenic 25.0%
! AAAAGTAAAAAATAAGGGCA+GGG + chr2.3:6354348-6354367 None:intergenic 25.0%
! AAAGTTATCTTAATGTTGAG+AGG - chr2.3:6355501-6355520 MS.gene028621:CDS 25.0%
! AAATACATTAAACTATGCAC+CGG + chr2.3:6351639-6351658 None:intergenic 25.0%
! ACACTAGTGCTTATATAAAA+TGG + chr2.3:6355261-6355280 None:intergenic 25.0%
! CATAAAAAGATTTACACTGA+AGG + chr2.3:6355211-6355230 None:intergenic 25.0%
! CTAAATTTAAATGGAAACAG+CGG - chr2.3:6351980-6351999 MS.gene028621:CDS 25.0%
! CTTTACTTATCTTGTTAACT+TGG - chr2.3:6352286-6352305 MS.gene028621:intron 25.0%
! GGATTTAGTAATAACACAAA+TGG - chr2.3:6351758-6351777 MS.gene028621:intron 25.0%
! TAAAAAGATTTACACTGAAG+GGG + chr2.3:6355209-6355228 None:intergenic 25.0%
! TTGTAGTTATATTAGTAGAC+GGG - chr2.3:6355380-6355399 MS.gene028621:intron 25.0%
!! AAAACTTTTTATGTGATGTG+AGG - chr2.3:6353785-6353804 MS.gene028621:intron 25.0%
!! AAAATCTTCACAAGACTTTT+GGG - chr2.3:6354202-6354221 MS.gene028621:intron 25.0%
!! TGAATAGGATTTGTTTCAAA+AGG + chr2.3:6354457-6354476 None:intergenic 25.0%
!! TGGTTTATTAAGTTGTTAGA+TGG - chr2.3:6354712-6354731 MS.gene028621:intron 25.0%
!! TGTTGTTGTTATATTATTGC+AGG - chr2.3:6355064-6355083 MS.gene028621:CDS 25.0%
!! TTTGTGTTATTACTAAATCC+AGG + chr2.3:6351758-6351777 None:intergenic 25.0%
!! TTTTTACTTATTTATCCACG+TGG - chr2.3:6354765-6354784 MS.gene028621:intron 25.0%
!!! CGTTGTTTTACATATTTTAC+AGG - chr2.3:6354429-6354448 MS.gene028621:CDS 25.0%
!!! CTTATTTTTGGGGTTATAAA+AGG - chr2.3:6352973-6352992 MS.gene028621:CDS 25.0%
!!! GCAGGATAATTGTTTTATTT+AGG - chr2.3:6355082-6355101 MS.gene028621:CDS 25.0%
!!! TGTTTTATTTAGGCTTCTAA+TGG - chr2.3:6355092-6355111 MS.gene028621:CDS 25.0%
!!! TTTGGTTTTCTTTCTTTCTT+TGG - chr2.3:6352425-6352444 MS.gene028621:CDS 25.0%
AAAAGATTACCGACAAACTA+TGG - chr2.3:6354839-6354858 MS.gene028621:intron 30.0%
AATCAAGATCTTCATATGCA+TGG - chr2.3:6353651-6353670 MS.gene028621:intron 30.0%
AATTCTCCAAATACTGTTTC+TGG - chr2.3:6353922-6353941 MS.gene028621:intron 30.0%
ACAACAACAACATATAACAG+AGG + chr2.3:6355053-6355072 None:intergenic 30.0%
ACAGTATTTGGAGAATTTAG+AGG + chr2.3:6353919-6353938 None:intergenic 30.0%
AGATCCTGAATCAAAATATG+AGG + chr2.3:6352485-6352504 None:intergenic 30.0%
AGTACATCACTTGAATTCTA+TGG - chr2.3:6352579-6352598 MS.gene028621:intron 30.0%
AGTTTATACTCTCTTCTTGA+AGG - chr2.3:6353000-6353019 MS.gene028621:CDS 30.0%
ATCAAGATCTTCATATGCAT+GGG - chr2.3:6353652-6353671 MS.gene028621:intron 30.0%
ATCAGATAGTATCATGAACA+AGG + chr2.3:6353481-6353500 None:intergenic 30.0%
ATCATATTGTATGCAGTATC+TGG - chr2.3:6355458-6355477 MS.gene028621:CDS 30.0%
GATACTGCATACAATATGAT+TGG + chr2.3:6355458-6355477 None:intergenic 30.0%
GCTTCACGTCTAAATTTAAA+TGG - chr2.3:6351971-6351990 MS.gene028621:intron 30.0%
GTACATCACTTGAATTCTAT+GGG - chr2.3:6352580-6352599 MS.gene028621:intron 30.0%
GTATATAAAAGTTCCCAACA+TGG - chr2.3:6354917-6354936 MS.gene028621:intron 30.0%
GTCTTTCATTATCTTTCTAC+CGG - chr2.3:6351617-6351636 MS.gene028621:intron 30.0%
TACATCACTTGAATTCTATG+GGG - chr2.3:6352581-6352600 MS.gene028621:intron 30.0%
TATGCATAGTGAAAGTGAAT+AGG + chr2.3:6354472-6354491 None:intergenic 30.0%
TATTCTTGGATAACTGTTCA+TGG - chr2.3:6354646-6354665 MS.gene028621:intron 30.0%
TGATAATATTTGTACACAGG+TGG - chr2.3:6353322-6353341 MS.gene028621:CDS 30.0%
TTTGAGTATCTCAAGAGTAA+CGG - chr2.3:6351565-6351584 MS.gene028621:intron 30.0%
! CATTTTGAATGCTAAACTCT+TGG + chr2.3:6352836-6352855 None:intergenic 30.0%
! CTTTTACTGTATGAAACTCA+CGG + chr2.3:6353431-6353450 None:intergenic 30.0%
! GAAAATCTTCACAAGACTTT+TGG - chr2.3:6354201-6354220 MS.gene028621:intron 30.0%
! GTATTTTGCGAAGTTTACTT+TGG - chr2.3:6354403-6354422 MS.gene028621:CDS 30.0%
! TGTCATTAAGTTGTTCTTTC+TGG + chr2.3:6353375-6353394 None:intergenic 30.0%
!! TCTTGTTGACTTGATTATCT+TGG - chr2.3:6352324-6352343 MS.gene028621:intron 30.0%
!! TGGTAATGGAGAATTTACTA+TGG - chr2.3:6353342-6353361 MS.gene028621:CDS 30.0%
!! TGTTTTTCAGTATGAAATGG+TGG - chr2.3:6355139-6355158 MS.gene028621:intron 30.0%
!!! CTTTCCTCATATTTTGATTC+AGG - chr2.3:6352478-6352497 MS.gene028621:intron 30.0%
!!! TAATGGACACATTTTTTTGC+AGG - chr2.3:6355109-6355128 MS.gene028621:CDS 30.0%
!!! TCTTGGTTTTGTTGTACAAT+AGG + chr2.3:6352819-6352838 None:intergenic 30.0%
!!! TGAATTTTGGTTTAGACTAG+CGG - chr2.3:6353871-6353890 MS.gene028621:intron 30.0%
AAAACAAGCACATACGAAAG+AGG - chr2.3:6354951-6354970 MS.gene028621:CDS 35.0%
AAACTCTACGTATCATTCAC+AGG - chr2.3:6353695-6353714 MS.gene028621:intron 35.0%
AACAAGTTCTATGGGAAACA+TGG - chr2.3:6351892-6351911 MS.gene028621:intron 35.0%
AATAACACAAATGGAGTTGC+TGG - chr2.3:6351767-6351786 MS.gene028621:intron 35.0%
AATGGTTCCTATTGTTGTAG+AGG - chr2.3:6353215-6353234 MS.gene028621:intron 35.0%
ACAGTTATCCAAGAATAACC+CGG + chr2.3:6354643-6354662 None:intergenic 35.0%
ATACACAGTACCTTTGTATC+CGG + chr2.3:6352877-6352896 None:intergenic 35.0%
ATATAGCTGTGCTTCATCTT+TGG + chr2.3:6354549-6354568 None:intergenic 35.0%
ATCAACTCCTCTACAACAAT+AGG + chr2.3:6353225-6353244 None:intergenic 35.0%
ATCTGTATTCTTTCTGCAGA+TGG - chr2.3:6353521-6353540 MS.gene028621:intron 35.0%
ATCTTCGCCAAATGTATGAA+CGG + chr2.3:6353190-6353209 None:intergenic 35.0%
ATTAGGTATGTTCAACAGAC+AGG + chr2.3:6355433-6355452 None:intergenic 35.0%
ATTTGGCGAAGATGCTTTAA+TGG - chr2.3:6353197-6353216 MS.gene028621:intron 35.0%
CCTAACATTGAAATTACCTG+AGG + chr2.3:6352508-6352527 None:intergenic 35.0%
CCTCAGGTAATTTCAATGTT+AGG - chr2.3:6352505-6352524 MS.gene028621:intron 35.0%
CGACTTTCCTAATGTAAATG+AGG - chr2.3:6353722-6353741 MS.gene028621:intron 35.0%
CTACCAAAATACATACCTTG+TGG + chr2.3:6352058-6352077 None:intergenic 35.0%
CTCTTGAGATACTCAAACAA+AGG + chr2.3:6351562-6351581 None:intergenic 35.0%
GATAACTGTTCATGGATTCT+TGG - chr2.3:6354654-6354673 MS.gene028621:intron 35.0%
TAGTTATATTAGTAGACGGG+AGG - chr2.3:6355383-6355402 MS.gene028621:intron 35.0%
TATAGCTGTGCTTCATCTTT+GGG + chr2.3:6354548-6354567 None:intergenic 35.0%
TATTTGTACACAGGTGGTAA+TGG - chr2.3:6353328-6353347 MS.gene028621:CDS 35.0%
TCATATTTGCAGCTATCTCA+TGG - chr2.3:6351674-6351693 MS.gene028621:intron 35.0%
TCTGTATTCTTTCTGCAGAT+GGG - chr2.3:6353522-6353541 MS.gene028621:intron 35.0%
TGATACGTAGAGTTTGAAGA+CGG + chr2.3:6353690-6353709 None:intergenic 35.0%
TTACTTCCATGTCACCTTAA+TGG + chr2.3:6352089-6352108 None:intergenic 35.0%
! AACTTGCTTTGATGGGAATA+TGG + chr2.3:6353831-6353850 None:intergenic 35.0%
! ATAAGTGTTGTAGGAAATCC+TGG - chr2.3:6351737-6351756 MS.gene028621:intron 35.0%
! CTTCCACAAGGTATGTATTT+TGG - chr2.3:6352052-6352071 MS.gene028621:CDS 35.0%
! TCTTTTATGTGATGCAGCAA+GGG - chr2.3:6354381-6354400 MS.gene028621:CDS 35.0%
! TTCTTTTATGTGATGCAGCA+AGG - chr2.3:6354380-6354399 MS.gene028621:CDS 35.0%
! TTGACAGCACATTTTTCGTT+AGG - chr2.3:6352922-6352941 MS.gene028621:CDS 35.0%
!! TCCAAATACTGTTTCTGGTA+CGG - chr2.3:6353927-6353946 MS.gene028621:intron 35.0%
!! TTGGCTTGTTAAGTGTAATC+AGG - chr2.3:6354103-6354122 MS.gene028621:intron 35.0%
!! TTGTTATTTGGCCTTGTTTC+CGG - chr2.3:6354621-6354640 MS.gene028621:intron 35.0%
!!! AGGACTACACTCTTTTTTCA+CGG - chr2.3:6352258-6352277 MS.gene028621:intron 35.0%
!!! TATGTGCTTGTTTTGACAAG+CGG + chr2.3:6354945-6354964 None:intergenic 35.0%
!!! TGTGAGGTTTTGTTTTGAAC+TGG - chr2.3:6353801-6353820 MS.gene028621:intron 35.0%
AAGTGCTTGGATCAAAACAG+TGG + chr2.3:6354983-6355002 None:intergenic 40.0%
ACAAGTCCATTAAGGTGACA+TGG - chr2.3:6352080-6352099 MS.gene028621:CDS 40.0%
ACCTGCATTTCCCAAAATTG+GGG + chr2.3:6351864-6351883 None:intergenic 40.0%
AGGAATAGAACAGCTAGGTT+AGG + chr2.3:6355413-6355432 None:intergenic 40.0%
AGTGATGTACTGCTTGCATA+TGG + chr2.3:6352570-6352589 None:intergenic 40.0%
ATATAACAGAGGAGTGAGAG+TGG + chr2.3:6355042-6355061 None:intergenic 40.0%
CATTGAAGCACACTAAACTC+TGG + chr2.3:6354261-6354280 None:intergenic 40.0%
CCACTAGAAAGACTTGATGT+AGG + chr2.3:6351486-6351505 None:intergenic 40.0%
CCTACATCAAGTCTTTCTAG+TGG - chr2.3:6351483-6351502 MS.gene028621:CDS 40.0%
CGAATTTAAGGATAACCACG+TGG + chr2.3:6354783-6354802 None:intergenic 40.0%
CTGTATTCTTTCTGCAGATG+GGG - chr2.3:6353523-6353542 MS.gene028621:intron 40.0%
CTTCATCCCATGATCTCTAA+AGG + chr2.3:6354040-6354059 None:intergenic 40.0%
GAATCGATCTTACAACACTC+GGG - chr2.3:6354160-6354179 MS.gene028621:CDS 40.0%
GACCTGCATTTCCCAAAATT+GGG + chr2.3:6351865-6351884 None:intergenic 40.0%
GCAAGTGCCTCATTTACATT+AGG + chr2.3:6353732-6353751 None:intergenic 40.0%
GGAAAATAAGTAGCTGTGAG+TGG - chr2.3:6354692-6354711 MS.gene028621:intron 40.0%
GGAATCGATCTTACAACACT+CGG - chr2.3:6354159-6354178 MS.gene028621:CDS 40.0%
GGACAAAATCGATTGATGAG+TGG - chr2.3:6352025-6352044 MS.gene028621:CDS 40.0%
TACACAGTACCTTTGTATCC+GGG + chr2.3:6352876-6352895 None:intergenic 40.0%
TCAGGCTCTTTACGAAAACA+GGG - chr2.3:6352786-6352805 MS.gene028621:CDS 40.0%
TGGTAGTCACAAGTCCATTA+AGG - chr2.3:6352072-6352091 MS.gene028621:CDS 40.0%
TGTGTGACCGTTCATACATT+TGG - chr2.3:6353180-6353199 MS.gene028621:intron 40.0%
TTAAATGGAAACAGCGGATC+TGG - chr2.3:6351986-6352005 MS.gene028621:CDS 40.0%
TTACCAATTGCAGCAGAAGA+TGG + chr2.3:6351812-6351831 None:intergenic 40.0%
TTCAGGCTCTTTACGAAAAC+AGG - chr2.3:6352785-6352804 MS.gene028621:CDS 40.0%
TTGTGACTGCATCATTGACA+TGG + chr2.3:6353401-6353420 None:intergenic 40.0%
! AACCAGTCCTTTAGAGATCA+TGG - chr2.3:6354030-6354049 MS.gene028621:intron 40.0%
! ACCAGTCCTTTAGAGATCAT+GGG - chr2.3:6354031-6354050 MS.gene028621:intron 40.0%
! ACGTCAGAAACTTGCTTTGA+TGG + chr2.3:6353839-6353858 None:intergenic 40.0%
! AGAGGAGGTATAAGTGTTGT+AGG - chr2.3:6351728-6351747 MS.gene028621:intron 40.0%
! CGTCAGAAACTTGCTTTGAT+GGG + chr2.3:6353838-6353857 None:intergenic 40.0%
! CTCTCTTCTTGAAGGAGTTT+TGG - chr2.3:6353008-6353027 MS.gene028621:CDS 40.0%
! GAGCAACAACCATAGTTTGT+CGG + chr2.3:6354851-6354870 None:intergenic 40.0%
! TTACAGCTGACATTTGCTGA+AGG + chr2.3:6354011-6354030 None:intergenic 40.0%
! TTGTTGTGAGGTTAGTCAGT+TGG - chr2.3:6353281-6353300 MS.gene028621:CDS 40.0%
!! ATCTTTGATGGCTTGTTGTG+AGG - chr2.3:6353269-6353288 MS.gene028621:intron 40.0%
!! CCAAATACTGTTTCTGGTAC+GGG - chr2.3:6353928-6353947 MS.gene028621:intron 40.0%
!! TGCATATGGCTTTGTGAAAG+TGG + chr2.3:6352556-6352575 None:intergenic 40.0%
!! TGCTGGATGAGTTGATCATA+TGG + chr2.3:6353955-6353974 None:intergenic 40.0%
!! TGTTATTTGGCCTTGTTTCC+GGG - chr2.3:6354622-6354641 MS.gene028621:intron 40.0%
!! TTTTGATTCAGGATCTCCTC+AGG - chr2.3:6352489-6352508 MS.gene028621:intron 40.0%
!!! ATTGGGAGTATCCCCAATTT+TGG - chr2.3:6351850-6351869 MS.gene028621:intron 40.0%
!!! TTGGGAGTATCCCCAATTTT+GGG - chr2.3:6351851-6351870 MS.gene028621:intron 40.0%
AACAAGCCAAGCAGACCAAA+TGG + chr2.3:6354093-6354112 None:intergenic 45.0%
AGAGCAAGAGATGTCAGATC+AGG + chr2.3:6354138-6354157 None:intergenic 45.0%
AGGGAAGTCATTGAGGTCAA+AGG + chr2.3:6352641-6352660 None:intergenic 45.0%
CAAGCACTTTCGAAACTGTC+CGG - chr2.3:6354994-6355013 MS.gene028621:CDS 45.0%
CAATCTGCTCCTGATCCATT+TGG - chr2.3:6354075-6354094 MS.gene028621:intron 45.0%
CAGACAGGAATAGAACAGCT+AGG + chr2.3:6355418-6355437 None:intergenic 45.0%
CATTCAGGAGTCAACAGTAG+AGG - chr2.3:6351710-6351729 MS.gene028621:intron 45.0%
CCAAGAATAACCCGGAAACA+AGG + chr2.3:6354635-6354654 None:intergenic 45.0%
CCAATCCTGGAACAGCATTA+CGG + chr2.3:6351835-6351854 None:intergenic 45.0%
CCCGTACCAGAAACAGTATT+TGG + chr2.3:6353931-6353950 None:intergenic 45.0%
CCGCGGATAACAAGTTCTAT+GGG - chr2.3:6351884-6351903 MS.gene028621:intron 45.0%
CCTCAATGTTGTGGCAAAGA+CGG + chr2.3:6355173-6355192 None:intergenic 45.0%
CGTAATGCTGTTCCAGGATT+GGG - chr2.3:6351833-6351852 MS.gene028621:intron 45.0%
CTATCTCATGGAAGCTCTCA+TGG - chr2.3:6351686-6351705 MS.gene028621:intron 45.0%
CTATCTGCTCCTCAATGTTG+TGG + chr2.3:6355182-6355201 None:intergenic 45.0%
CTATGGGAAACATGGTTGCT+GGG - chr2.3:6351900-6351919 MS.gene028621:intron 45.0%
CTCTCAGTTACAAACGAGGT+TGG - chr2.3:6354868-6354887 MS.gene028621:intron 45.0%
CTTCCATCTTCTGCTGCAAT+TGG - chr2.3:6351806-6351825 MS.gene028621:intron 45.0%
GAAGACTTTCCAGCTTTACC+CGG - chr2.3:6352855-6352874 MS.gene028621:CDS 45.0%
GACAAGATAACAGCTCTCAG+TGG + chr2.3:6355347-6355366 None:intergenic 45.0%
GATCTGACATCTCTTGCTCT+TGG - chr2.3:6354138-6354157 MS.gene028621:CDS 45.0%
GGAAATTCTTATCCCAGTGC+TGG - chr2.3:6352526-6352545 MS.gene028621:intron 45.0%
GGACCTGCATTTCCCAAAAT+TGG + chr2.3:6351866-6351885 None:intergenic 45.0%
GGGAAGTCATTGAGGTCAAA+GGG + chr2.3:6352640-6352659 None:intergenic 45.0%
GTTGCTCTCAGTTACAAACG+AGG - chr2.3:6354864-6354883 MS.gene028621:intron 45.0%
TATGGGAAACATGGTTGCTG+GGG - chr2.3:6351901-6351920 MS.gene028621:intron 45.0%
TATTCTTTCTGCAGATGGGG+AGG - chr2.3:6353526-6353545 MS.gene028621:intron 45.0%
TCCGCGGATAACAAGTTCTA+TGG - chr2.3:6351883-6351902 MS.gene028621:intron 45.0%
TCTATGGGAAACATGGTTGC+TGG - chr2.3:6351899-6351918 MS.gene028621:intron 45.0%
TCTCCTTCTGTCAGTAACAG+CGG - chr2.3:6353606-6353625 MS.gene028621:CDS 45.0%
TTAGCTGAGGGAAGTCATTG+AGG + chr2.3:6352648-6352667 None:intergenic 45.0%
! AATTCTTATCCCAGTGCTGG+AGG - chr2.3:6352529-6352548 MS.gene028621:intron 45.0%
! ACATTTGCTGAAGGCGAAAC+TGG + chr2.3:6354002-6354021 None:intergenic 45.0%
! CATTTGCTGAAGGCGAAACT+GGG + chr2.3:6354001-6354020 None:intergenic 45.0%
! CCTTGTTTCCGGGTTATTCT+TGG - chr2.3:6354632-6354651 MS.gene028621:intron 45.0%
! TCCCATGATCTCTAAAGGAC+TGG + chr2.3:6354035-6354054 None:intergenic 45.0%
! TGAGGTTAGTCAGTTGGCTT+TGG - chr2.3:6353287-6353306 MS.gene028621:CDS 45.0%
!! ACAAGACTTTTGGGTCTCCT+TGG - chr2.3:6354211-6354230 MS.gene028621:intron 45.0%
!! AGGTCTGCTGGTTTCAGTTT+GGG - chr2.3:6353546-6353565 MS.gene028621:intron 45.0%
!! ATCACAAAGAGCATCGCATG+TGG - chr2.3:6354895-6354914 MS.gene028621:intron 45.0%
!! CCCATAGAACTTGTTATCCG+CGG + chr2.3:6351887-6351906 None:intergenic 45.0%
!! GAGTTGCTGGTTCTATTCCT+GGG - chr2.3:6351780-6351799 MS.gene028621:intron 45.0%
!! TAGGACGACTTGTTAGCTGA+GGG + chr2.3:6352660-6352679 None:intergenic 45.0%
!! TCCCCAATTTTGGGAAATGC+AGG - chr2.3:6351860-6351879 MS.gene028621:intron 45.0%
!! TCTGGTGTTGTTGATACTGC+TGG + chr2.3:6353972-6353991 None:intergenic 45.0%
AACATTGGGAGGCTAAGCTC+TGG - chr2.3:6351926-6351945 MS.gene028621:intron 50.0%
AACTCTGGATCACCCTTAGC+TGG + chr2.3:6354246-6354265 None:intergenic 50.0%
AATGGAAACAGCGGATCTGG+TGG - chr2.3:6351989-6352008 MS.gene028621:CDS 50.0%
AGAGGCCTTAATCCAATGCC+AGG + chr2.3:6353901-6353920 None:intergenic 50.0%
ATGGGAAACATGGTTGCTGG+GGG - chr2.3:6351902-6351921 MS.gene028621:intron 50.0%
ATTGGGGATACTCCCAATCC+TGG + chr2.3:6351848-6351867 None:intergenic 50.0%
CACTTTCGAAACTGTCCGGA+GGG - chr2.3:6354998-6355017 MS.gene028621:CDS 50.0%
CCAAGCAGACCAAATGGATC+AGG + chr2.3:6354087-6354106 None:intergenic 50.0%
CCAGCTTTACCCGGATACAA+AGG - chr2.3:6352864-6352883 MS.gene028621:CDS 50.0%
CCGTAATGCTGTTCCAGGAT+TGG - chr2.3:6351832-6351851 MS.gene028621:intron 50.0%
CCGTCTTTGCCACAACATTG+AGG - chr2.3:6355170-6355189 MS.gene028621:intron 50.0%
CCTGATCCATTTGGTCTGCT+TGG - chr2.3:6354084-6354103 MS.gene028621:intron 50.0%
CCTTTGTATCCGGGTAAAGC+TGG + chr2.3:6352867-6352886 None:intergenic 50.0%
CTGGAGGATTGTCCATTCCT+GGG - chr2.3:6351945-6351964 MS.gene028621:intron 50.0%
GAAGGAGAATGCTGCTGTTG+AGG + chr2.3:6353594-6353613 None:intergenic 50.0%
GAATGTCTCACGTGTAGAGC+AGG + chr2.3:6354303-6354322 None:intergenic 50.0%
GCAGAAGATGGAAGAATCCC+AGG + chr2.3:6351800-6351819 None:intergenic 50.0%
GCTCTACACGTGAGACATTC+TGG - chr2.3:6354303-6354322 MS.gene028621:CDS 50.0%
GGAAGCTCTCATGGACATTC+AGG - chr2.3:6351695-6351714 MS.gene028621:intron 50.0%
GGTAACCGTAATGCTGTTCC+AGG - chr2.3:6351827-6351846 MS.gene028621:intron 50.0%
GTCAAAGGGTGAACTGTCAC+TGG + chr2.3:6352626-6352645 None:intergenic 50.0%
GTTCACAGAAACTCACCCTC+CGG + chr2.3:6355016-6355035 None:intergenic 50.0%
TCAGGAGTCAACAGTAGAGG+AGG - chr2.3:6351713-6351732 MS.gene028621:intron 50.0%
TCTGGAGGATTGTCCATTCC+TGG - chr2.3:6351944-6351963 MS.gene028621:intron 50.0%
TCTTCCTTCTGCTCTGTCAC+AGG - chr2.3:6351524-6351543 MS.gene028621:intron 50.0%
TGGTCTGAGGAACCAGCTAA+GGG - chr2.3:6354231-6354250 MS.gene028621:intron 50.0%
TGTACCTGTGACAGAGCAGA+AGG + chr2.3:6351531-6351550 None:intergenic 50.0%
TTGACAAGCGGCTCCATGTT+GGG + chr2.3:6354933-6354952 None:intergenic 50.0%
TTGGTCTGAGGAACCAGCTA+AGG - chr2.3:6354230-6354249 MS.gene028621:intron 50.0%
TTTAGACGTGAAGCAAGCCC+AGG + chr2.3:6351965-6351984 None:intergenic 50.0%
TTTGACAAGCGGCTCCATGT+TGG + chr2.3:6354934-6354953 None:intergenic 50.0%
! GACCTCCTGGCATTGGATTA+AGG - chr2.3:6353893-6353912 MS.gene028621:intron 50.0%
! TTAGCTGGTTCCTCAGACCA+AGG + chr2.3:6354231-6354250 None:intergenic 50.0%
!! AAGTCGTCCTAGTTCTGCTG+GGG - chr2.3:6352669-6352688 MS.gene028621:intron 50.0%
!! ACAAGTCGTCCTAGTTCTGC+TGG - chr2.3:6352667-6352686 MS.gene028621:intron 50.0%
!! CAAGTCGTCCTAGTTCTGCT+GGG - chr2.3:6352668-6352687 MS.gene028621:intron 50.0%
!! CGGACAGTTTCGAAAGTGCT+TGG + chr2.3:6354996-6355015 None:intergenic 50.0%
!! CTAGGACGACTTGTTAGCTG+AGG + chr2.3:6352661-6352680 None:intergenic 50.0%
!! GAGGTCTGCTGGTTTCAGTT+TGG - chr2.3:6353545-6353564 MS.gene028621:intron 50.0%
!! GGAGTTGCTGGTTCTATTCC+TGG - chr2.3:6351779-6351798 MS.gene028621:intron 50.0%
!! TCTGCTGGTTTCAGTTTGGG+AGG - chr2.3:6353549-6353568 MS.gene028621:intron 50.0%
!! TTTTGGGAAATGCAGGTCCG+CGG - chr2.3:6351867-6351886 MS.gene028621:intron 50.0%
!! TTTTGGGTCTCCTTGGTCTG+AGG - chr2.3:6354218-6354237 MS.gene028621:intron 50.0%
AACAGCGGATCTGGTGGCTT+AGG - chr2.3:6351995-6352014 MS.gene028621:CDS 55.0%
AAGGACAGTTGGGTGCGTGA+TGG - chr2.3:6352698-6352717 MS.gene028621:CDS 55.0%
ACGCCGCTGTTACTGACAGA+AGG + chr2.3:6353612-6353631 None:intergenic 55.0%
ACGTGAAGCAAGCCCAGGAA+TGG + chr2.3:6351960-6351979 None:intergenic 55.0%
ATGAGTGGCGTGCTTCCACA+AGG - chr2.3:6352040-6352059 MS.gene028621:CDS 55.0%
ATGGTTGCTGGGGGGAACAT+TGG - chr2.3:6351911-6351930 MS.gene028621:intron 55.0%
GAAAGTGGACCTCCAGCACT+GGG + chr2.3:6352541-6352560 None:intergenic 55.0%
GCACTTTCGAAACTGTCCGG+AGG - chr2.3:6354997-6355016 MS.gene028621:CDS 55.0%
GCTGAAGGCGAAACTGGGAT+TGG + chr2.3:6353996-6354015 None:intergenic 55.0%
GGCCTTAATCCAATGCCAGG+AGG + chr2.3:6353898-6353917 None:intergenic 55.0%
GGTTGTTGAACCGCTCCAGT+TGG + chr2.3:6351465-6351484 None:intergenic 55.0%
TGAAAGTGGACCTCCAGCAC+TGG + chr2.3:6352542-6352561 None:intergenic 55.0%
TGGGAAACATGGTTGCTGGG+GGG - chr2.3:6351903-6351922 MS.gene028621:intron 55.0%
TGGTTGCTGGGGGGAACATT+GGG - chr2.3:6351912-6351931 MS.gene028621:intron 55.0%
TGTCTCACGTGTAGAGCAGG+AGG + chr2.3:6354300-6354319 None:intergenic 55.0%
! ATTGGGAGGCTAAGCTCTGG+AGG - chr2.3:6351929-6351948 MS.gene028621:intron 55.0%
! GTTTAGACTAGCGGACCTCC+TGG - chr2.3:6353880-6353899 MS.gene028621:intron 55.0%
!! AGTCGTCCTAGTTCTGCTGG+GGG - chr2.3:6352670-6352689 MS.gene028621:intron 55.0%
!! GGCGAAACTGGGATTGGTTC+TGG + chr2.3:6353990-6354009 None:intergenic 55.0%
CACGCACCCAACTGTCCTTG+AGG + chr2.3:6352697-6352716 None:intergenic 60.0%
CTCACGTGTAGAGCAGGAGG+TGG + chr2.3:6354297-6354316 None:intergenic 60.0%
TCTGGTGGCTTAGGCGTGCA+AGG - chr2.3:6352004-6352023 MS.gene028621:CDS 60.0%
TTGCTGGGGGGAACATTGGG+AGG - chr2.3:6351915-6351934 MS.gene028621:intron 60.0%
! ACTAGCGGACCTCCTGGCAT+TGG - chr2.3:6353886-6353905 MS.gene028621:intron 60.0%
!! GTCGTCCTAGTTCTGCTGGG+GGG - chr2.3:6352671-6352690 MS.gene028621:intron 60.0%
AGTTCTGCTGGGGGGCCTCA+AGG - chr2.3:6352679-6352698 MS.gene028621:intron 65.0%
CTGCAGATGGGGAGGTCTGC+TGG - chr2.3:6353534-6353553 MS.gene028621:intron 65.0%
GGGGGGCCTCAAGGACAGTT+GGG - chr2.3:6352688-6352707 MS.gene028621:CDS 65.0%
TGAGGCCCCCCAGCAGAACT+AGG + chr2.3:6352679-6352698 None:intergenic 65.0%
TGGGGGGCCTCAAGGACAGT+TGG - chr2.3:6352687-6352706 MS.gene028621:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 6351459 6355535 6351459 ID=MS.gene028621
chr2.3 mRNA 6351459 6355535 6351459 ID=MS.gene028621.t1;Parent=MS.gene028621
chr2.3 exon 6355449 6355535 6355449 ID=MS.gene028621.t1.exon1;Parent=MS.gene028621.t1
chr2.3 CDS 6355449 6355535 6355449 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6355260 6355308 6355260 ID=MS.gene028621.t1.exon2;Parent=MS.gene028621.t1
chr2.3 CDS 6355260 6355308 6355260 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6354933 6355145 6354933 ID=MS.gene028621.t1.exon3;Parent=MS.gene028621.t1
chr2.3 CDS 6354933 6355145 6354933 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6354285 6354494 6354285 ID=MS.gene028621.t1.exon4;Parent=MS.gene028621.t1
chr2.3 CDS 6354285 6354494 6354285 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6354109 6354204 6354109 ID=MS.gene028621.t1.exon5;Parent=MS.gene028621.t1
chr2.3 CDS 6354109 6354204 6354109 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6353565 6353653 6353565 ID=MS.gene028621.t1.exon6;Parent=MS.gene028621.t1
chr2.3 CDS 6353565 6353653 6353565 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6353278 6353454 6353278 ID=MS.gene028621.t1.exon7;Parent=MS.gene028621.t1
chr2.3 CDS 6353278 6353454 6353278 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6352683 6353108 6352683 ID=MS.gene028621.t1.exon8;Parent=MS.gene028621.t1
chr2.3 CDS 6352683 6353108 6352683 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6352544 6352596 6352544 ID=MS.gene028621.t1.exon9;Parent=MS.gene028621.t1
chr2.3 CDS 6352544 6352596 6352544 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6352412 6352453 6352412 ID=MS.gene028621.t1.exon10;Parent=MS.gene028621.t1
chr2.3 CDS 6352412 6352453 6352412 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6351975 6352119 6351975 ID=MS.gene028621.t1.exon11;Parent=MS.gene028621.t1
chr2.3 CDS 6351975 6352119 6351975 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
chr2.3 exon 6351459 6351520 6351459 ID=MS.gene028621.t1.exon12;Parent=MS.gene028621.t1
chr2.3 CDS 6351459 6351520 6351459 ID=cds.MS.gene028621.t1;Parent=MS.gene028621.t1
Gene Sequence

>MS.gene028621

ATGCCAACTGGAGCGGTTCAACAACCTACATCAAGTCTTTCTAGTGGAAGATTTACATCTAATAATCTTCCTTCTGCTCTGTCACAGGTACATGTGAATGCCTTTGTTTGAGTATCTCAAGAGTAACGGCTGAGCTATTGAACGTACTCAACTCTTCTGTCTTTCATTATCTTTCTACCGGTGCATAGTTTAATGTATTTCCATTTGTCTATATATCATATTTGCAGCTATCTCATGGAAGCTCTCATGGACATTCAGGAGTCAACAGTAGAGGAGGTATAAGTGTTGTAGGAAATCCTGGATTTAGTAATAACACAAATGGAGTTGCTGGTTCTATTCCTGGGATTCTTCCATCTTCTGCTGCAATTGGTAACCGTAATGCTGTTCCAGGATTGGGAGTATCCCCAATTTTGGGAAATGCAGGTCCGCGGATAACAAGTTCTATGGGAAACATGGTTGCTGGGGGGAACATTGGGAGGCTAAGCTCTGGAGGATTGTCCATTCCTGGGCTTGCTTCACGTCTAAATTTAAATGGAAACAGCGGATCTGGTGGCTTAGGCGTGCAAGGACAAAATCGATTGATGAGTGGCGTGCTTCCACAAGGTATGTATTTTGGTAGTCACAAGTCCATTAAGGTGACATGGAAGTAATATTTTCTCCTAAAAAATATCCAATTATATATAGGTTATCTTCATATGTTCAGTTGAGATCTCTTTCAAAAGAGTTAGAATTAGATATTAAAAGTGATGTAAACTCTTTTTATGTATTTCTTTTACGTATAATTTATCTAGGGATATATAGGACTACACTCTTTTTTCACGGATGATCTTTACTTATCTTGTTAACTTGGTTATCGCTTTTCATATCTTGTTGACTTGATTATCTTGGATATAGTTTTCTTATTATGTACTTTGTTGCATTAGATGACATGTTTGAGTGCCTAGAAATTCATCTATATTTGTTTAATTTGGTTTTCTTTCTTTCTTTGGAATCTCATGAAGCTATGTTGTTGTACACTTCTTTCCTCATATTTTGATTCAGGATCTCCTCAGGTAATTTCAATGTTAGGAAATTCTTATCCCAGTGCTGGAGGTCCACTTTCACAAAGCCATATGCAAGCAGTACATCACTTGAATTCTATGGGGATGTTGAATGATTTGAATTCCAGTGACAGTTCACCCTTTGACCTCAATGACTTCCCTCAGCTAACAAGTCGTCCTAGTTCTGCTGGGGGGCCTCAAGGACAGTTGGGTGCGTGATGGAAAATGTTGTTTAGTTTAATATATTCTTCTCCTTCAACAAAAAAGAATAATGTAATCTATACATTTCAGGCTCTTTACGAAAACAGGGTCTTAGTCCTATTGTACAACAAAACCAAGAGTTTAGCATTCAAAATGAAGACTTTCCAGCTTTACCCGGATACAAAGGTACTGTGTATAACTTGAATGATCTTTGTGTGCTAATTGACAGCACATTTTTCGTTAGGAAATTATGCAGCTCAGTTGTATTATTTTCTTATTTTTGGGGTTATAAAAGGGTGAAGTTTATACTCTCTTCTTGAAGGAGTTTTGGATATTTGCTTATAAATCTGCTTTTTAGCTTCATTAAATTTTTTGCATATGCTTCATCGTGCATAATGTATCAGTGTTTTGTCTCCATTTTCTTTTATTTGTTTTGACAGGTATTATGACAGTTTCTTGCATTAGTTTTTTCTATATATTTGTGTGACCGTTCATACATTTGGCGAAGATGCTTTAATGGTTCCTATTGTTGTAGAGGAGTTGATGATTTATCATGTTTTCATTATTGAATCTTTGATGGCTTGTTGTGAGGTTAGTCAGTTGGCTTTGGCATTTGTTTTTATGATAATATTTGTACACAGGTGGTAATGGAGAATTTACTATGGATATGCACCAGAAAGAACAACTTAATGACAATACCATGTCAATGATGCAGTCACAACATTTCTCCGTGAGTTTCATACAGTAAAAGATTAAGATGTTGTGTTCTTAATCTTATCCTTGTTCATGATACTATCTGATCAAAATTTGTTCTCAATCTTATCTGTATTCTTTCTGCAGATGGGGAGGTCTGCTGGTTTCAGTTTGGGAGGATCTTATTCATCACATCGTCCTCAACAGCAGCATTCTCCTTCTGTCAGTAACAGCGGCGTCTCTTTTTCATCTATGAACAATCAAGATCTTCATATGCATGGGTCTGATGTTTTTCCGTCTTCAAACTCTACGTATCATTCACAGGTACACGACTTTCCTAATGTAAATGAGGCACTTGCTTTTGTGTTAGAATGTATTTTATTTTATTTTTTAAAACTTTTTATGTGATGTGAGGTTTTGTTTTGAACTGGAATTCCATATTCCCATCAAAGCAAGTTTCTGACGTTCTAATCGATTATGAATTTTGGTTTAGACTAGCGGACCTCCTGGCATTGGATTAAGGCCTCTAAATTCTCCAAATACTGTTTCTGGTACGGGTCCATATGATCAACTCATCCAGCAGTATCAACAACACCAGAACCAATCCCAGTTTCGCCTTCAGCAAATGTCAGCTGTAAACCAGTCCTTTAGAGATCATGGGATGAAGTCTATGCAAACTGCACAATCTGCTCCTGATCCATTTGGTCTGCTTGGCTTGTTAAGTGTAATCAGGATGAGTGATCCTGATCTGACATCTCTTGCTCTTGGAATCGATCTTACAACACTCGGGTTAAATTTGAATTCATCAGAAAATCTTCACAAGACTTTTGGGTCTCCTTGGTCTGAGGAACCAGCTAAGGGTGATCCAGAGTTTAGTGTGCTTCAATGTTATTATGCTAAACCACCTCCTGCTCTACACGTGAGACATTCTGGCTTTTGCTTTATATATTTTCCCTGCCCTTATTTTTTACTTTTTAGTTGGGCTAATTCTTTTATGTGATGCAGCAAGGGTATTTTGCGAAGTTTACTTTGGAGACGTTGTTTTACATATTTTACAGGTGCCTTTTGAAACAAATCCTATTCACTTTCACTATGCATACTTGTTATTATAATATTAGTACTAAATTAAATATGATCTTTTATTTCAGCATGCCCAAAGATGAAGCACAGCTATATGCAGCAAATGAACTGTATGCATTCGATCACATATACCCTTTTTTGTTATTTTTTGTTATTTGGCCTTGTTTCCGGGTTATTCTTGGATAACTGTTCATGGATTCTTGGAAAAACTTTTTAATTGGAAAATAAGTAGCTGTGAGTGGTTTATTAAGTTGTTAGATGGTTTTACTTTTAGCACATACCACTCTGAAATTTTTTACTTATTTATCCACGTGGTTATCCTTAAATTCGAAATATTTTGACTTATCCTTATTTTTAATCATATACAAAAGATTACCGACAAACTATGGTTGTTGCTCTCAGTTACAAACGAGGTTGGTTTTATCACAAAGAGCATCGCATGTGGTATATAAAAGTTCCCAACATGGAGCCGCTTGTCAAAACAAGCACATACGAAAGAGGATCTTACCACTGTTTTGATCCAAGCACTTTCGAAACTGTCCGGAGGGTGAGTTTCTGTGAACATACCACTCTCACTCCTCTGTTATATGTTGTTGTTGTTATATTATTGCAGGATAATTGTTTTATTTAGGCTTCTAATGGACACATTTTTTTGCAGGATAATTTTGTTTTTCAGTATGAAATGGTGGAAAAGAGACCGTCTTTGCCACAACATTGAGGAGCAGATAGAAAACCCCTTCAGTGTAAATCTTTTTATGCATGAATATAATTTATCATGAGGGAAGCCATTTTATATAAGCACTAGTGTAACTTCAATTTGACAATTATTAGAGTATGAATATAATTATCTTAGATTTTACTAAATCTCGATCCACTGAGAGCTGTTATCTTGTCGCCCAAATGTGAATTGTAGTTATATTAGTAGACGGGAGGTTAACCTAACCTAGCTGTTCTATTCCTGTCTGTTGAACATACCTAATATATTATCATATTGTATGCAGTATCTGGTAGTTGACCTATACAAAAATAAAGTTATCTTAATGTTGAGAGGAATATGCCCCAA
Protein sequence

>MS.gene028621.t1

MPTGAVQQPTSSLSSGRFTSNNLPSALSQLSHGSSHGHSGVNSRGGLGVSPILGNAGPRITSSMGNMVAGGNIGRLSSGGLSIPGLASRLNLNGNSGSGGLGVQGQNRLMSGVLPQGSPQVISMLGNSYPSAGGPLSQSHMQAVHHLNSMGMLNDLNSSDSSPFDLNDFPQLTSRPSSAGGPQGQLGSLRKQGLSPIVQQNQEFSIQNEDFPALPGYKGGNGEFTMDMHQKEQLNDNTMSMMQSQHFSMGRSAGFSLGGSYSSHRPQQQHSPSVSNSGVSFSSMNNQDLHMHGSDVFPSSNSTYHSQTSGPPGIGLRPLNSPNTVSGTGPYDQLIQQYQQHQNQSQFRLQQMSAVNQSFRDHGMKSMQTAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFGSPWSEEPAKGDPEFSVLQCYYAKPPPALHQGYFAKFTLETLFYIFYSMPKDEAQLYAANELYKRGWFYHKEHRMWYIKVPNMEPLVKTSTYERGSYHCFDPSTFETVRRYLVVDLYKNKVILMLRGICP