AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028704


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028704.t1 MTR_2g094640 96.848 349 11 0 1 349 1 349 0.0 679
MS.gene028704.t1 MTR_4g058860 84.770 348 51 2 1 347 1 347 0.0 589
MS.gene028704.t1 MTR_3g094260 64.943 348 119 3 1 346 1 347 1.03e-151 431
MS.gene028704.t1 MTR_3g094270 64.458 332 114 2 1 332 1 328 6.30e-143 408
MS.gene028704.t1 MTR_1291s0010 90.991 111 10 0 1 111 1 111 7.76e-65 201
MS.gene028704.t1 MTR_3g095130 38.978 313 189 2 13 324 16 327 8.92e-62 201
MS.gene028704.t1 MTR_8g092190 37.910 335 201 7 6 336 10 341 3.69e-58 192
MS.gene028704.t1 MTR_1g098240 40.426 282 167 1 13 293 16 297 7.02e-57 187
MS.gene028704.t1 MTR_1g026590 38.947 285 172 1 13 295 14 298 1.38e-55 185
MS.gene028704.t1 MTR_5g004620 36.416 346 213 4 6 346 9 352 2.34e-53 179
MS.gene028704.t1 MTR_3g095130 38.433 268 163 2 58 324 12 278 1.12e-50 171
MS.gene028704.t1 MTR_2g038410 30.435 299 200 2 10 304 54 348 8.68e-36 134
MS.gene028704.t1 MTR_5g096310 29.683 347 216 5 10 349 55 380 9.51e-35 131
MS.gene028704.t1 MTR_1g030320 25.545 321 230 4 20 333 23 341 4.92e-22 95.5
MS.gene028704.t1 MTR_3g072380 25.074 339 235 5 7 333 8 339 2.06e-21 94.0
MS.gene028704.t1 MTR_7g110380 26.036 338 224 10 15 340 19 342 2.61e-19 88.6
MS.gene028704.t1 MTR_0011s0320 26.393 341 210 15 22 341 25 345 5.05e-19 87.4
MS.gene028704.t1 MTR_3g107470 23.889 360 240 10 1 339 1 347 6.38e-18 84.0
MS.gene028704.t1 MTR_4g114360 25.449 334 213 12 22 333 25 344 1.31e-17 83.2
MS.gene028704.t1 MTR_4g123900 27.714 350 230 10 1 334 1 343 8.62e-15 75.1
MS.gene028704.t1 MTR_3g070000 25.080 311 206 7 7 304 24 320 7.91e-13 68.9
MS.gene028704.t1 MTR_3g462070 24.746 295 206 5 20 305 19 306 3.99e-12 66.6
MS.gene028704.t1 MTR_2g070400 24.149 323 228 9 15 325 15 332 5.08e-12 66.6
MS.gene028704.t1 MTR_5g081710 25.392 319 210 8 1 305 1 305 1.63e-11 64.7
MS.gene028704.t1 MTR_0662s0010 26.038 265 167 10 22 269 25 277 5.18e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028704.t1 AT2G28315 75.287 348 77 3 1 347 1 340 0.0 514
MS.gene028704.t1 AT2G28315 79.612 309 63 0 1 309 1 309 2.37e-177 494
MS.gene028704.t1 AT1G06890 67.069 331 104 2 1 329 1 328 4.18e-150 427
MS.gene028704.t1 AT1G06890 67.069 331 104 2 1 329 1 328 5.63e-150 426
MS.gene028704.t1 AT1G06890 67.069 331 104 2 1 329 1 328 8.32e-150 426
MS.gene028704.t1 AT1G06890 67.069 331 104 2 1 329 1 328 8.32e-150 426
MS.gene028704.t1 AT2G30460 64.826 344 116 2 1 342 1 341 6.14e-147 419
MS.gene028704.t1 AT2G30460 64.826 344 116 2 1 342 1 341 6.14e-147 419
MS.gene028704.t1 AT2G30460 61.231 325 117 4 21 342 2 320 4.79e-134 385
MS.gene028704.t1 AT2G30460 61.231 325 117 4 21 342 2 320 4.79e-134 385
MS.gene028704.t1 AT2G30460 61.231 325 117 4 21 342 2 320 4.79e-134 385
MS.gene028704.t1 AT2G30460 69.058 223 69 0 1 223 1 223 3.00e-96 290
MS.gene028704.t1 AT4G09810 38.344 326 192 2 13 337 16 333 1.40e-64 208
MS.gene028704.t1 AT5G42420 40.909 286 167 1 12 295 16 301 5.04e-63 204
MS.gene028704.t1 AT1G34020 37.812 320 192 2 18 336 21 334 7.79e-62 201
MS.gene028704.t1 AT1G34020 37.812 320 192 2 18 336 21 334 7.79e-62 201
MS.gene028704.t1 AT1G34020 37.812 320 192 2 18 336 21 334 7.79e-62 201
MS.gene028704.t1 AT4G39390 37.117 326 194 2 12 336 16 331 1.24e-60 198
MS.gene028704.t1 AT4G39390 37.117 326 194 2 12 336 20 335 1.31e-60 198
MS.gene028704.t1 AT4G39390 37.117 326 194 2 12 336 20 335 1.31e-60 198
MS.gene028704.t1 AT1G21070 36.061 330 203 4 12 336 16 342 1.92e-60 198
MS.gene028704.t1 AT1G76670 39.510 286 171 1 12 295 15 300 2.62e-58 192
MS.gene028704.t1 AT1G76670 39.510 286 171 1 12 295 15 300 2.62e-58 192
MS.gene028704.t1 AT4G09810 39.764 254 144 2 85 337 31 276 1.27e-53 178
MS.gene028704.t1 AT4G09810 40.385 208 124 0 13 220 16 223 3.03e-42 147
MS.gene028704.t1 AT5G55950 29.252 294 200 2 10 299 56 345 8.65e-36 134
MS.gene028704.t1 AT5G55950 29.592 294 194 3 22 306 8 297 1.15e-35 132
MS.gene028704.t1 AT5G57100 29.655 290 196 2 10 295 63 348 8.68e-34 129
MS.gene028704.t1 AT5G55950 29.520 271 183 2 33 299 1 267 1.60e-32 124
MS.gene028704.t1 AT5G42420 31.228 285 129 7 12 295 16 234 1.88e-27 109
MS.gene028704.t1 AT5G55950 28.333 240 164 2 10 245 56 291 3.55e-25 103
MS.gene028704.t1 AT5G57100 31.313 198 132 1 98 295 40 233 4.68e-24 100
MS.gene028704.t1 AT5G57100 28.333 240 164 2 10 245 63 298 1.06e-23 99.8
MS.gene028704.t1 AT1G21870 27.178 287 188 5 22 295 26 304 3.86e-20 90.5
MS.gene028704.t1 AT5G57100 31.073 177 118 1 10 182 63 239 5.53e-20 89.0
MS.gene028704.t1 AT1G77610 26.165 279 201 2 22 295 20 298 7.28e-20 89.4
MS.gene028704.t1 AT4G32390 25.068 367 237 12 1 346 1 350 9.60e-19 86.7
MS.gene028704.t1 AT5G25400 25.967 362 229 14 1 342 1 343 1.19e-18 86.3
MS.gene028704.t1 AT2G25520 24.518 363 234 11 1 339 1 347 1.79e-18 85.5
MS.gene028704.t1 AT5G11230 24.793 363 236 11 1 340 1 349 1.10e-17 83.6
MS.gene028704.t1 AT3G17430 26.220 328 218 11 22 337 23 338 3.22e-14 73.6
MS.gene028704.t1 AT3G17430 26.220 328 218 11 22 337 23 338 3.22e-14 73.6
MS.gene028704.t1 AT4G32272 24.662 296 202 6 19 296 47 339 1.96e-13 70.9
MS.gene028704.t1 AT5G05820 24.921 317 214 9 1 305 3 307 2.66e-13 70.1
MS.gene028704.t1 AT4G32272 24.830 294 200 6 21 296 64 354 6.09e-13 69.7
MS.gene028704.t1 AT3G11320 25.159 314 204 8 7 305 10 307 2.03e-12 67.4
MS.gene028704.t1 AT1G48230 25.826 333 219 13 22 336 23 345 2.89e-11 64.3
MS.gene028704.t1 AT1G48230 27.376 263 170 10 85 336 20 272 7.93e-11 62.8

Find 59 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATGGAAGGAACATTAT+TGG 0.207835 2.3:-7049398 MS.gene028704:CDS
CTCAAAACATGCCTTGTTCT+AGG 0.247020 2.3:-7049449 MS.gene028704:CDS
GAATTGTTTCTTTAGGAAAA+TGG 0.248886 2.3:+7050949 None:intergenic
TTTACCTGAATTGTTTCTTT+AGG 0.256246 2.3:+7050942 None:intergenic
CAAAGATAGCTCACCCCTTT+TGG 0.262621 2.3:-7048825 MS.gene028704:CDS
ATACTCATATTTCTGCTTAG+AGG 0.263454 2.3:-7049345 MS.gene028704:CDS
ACATGCCTTGTTCTAGGCTT+TGG 0.265247 2.3:-7049443 MS.gene028704:CDS
AAGTTCCAATTGGGTGTTAT+TGG 0.279379 2.3:-7052381 MS.gene028704:CDS
TCTCTATTCCTATTACTTGT+TGG 0.291077 2.3:-7050810 MS.gene028704:CDS
CCTAGTACTTGATAAGTTAC+AGG 0.330021 2.3:+7049476 None:intergenic
CATGCCTTGTTCTAGGCTTT+GGG 0.339614 2.3:-7049442 MS.gene028704:CDS
GAAGCCAAGCTTGCTCATTA+AGG 0.360689 2.3:+7052305 None:intergenic
CACCAACTCCAACAAGTAAT+AGG 0.371985 2.3:+7050802 None:intergenic
TTCCTATTACTTGTTGGAGT+TGG 0.375692 2.3:-7050804 MS.gene028704:CDS
CAGATATTCTTCTACGGTCT+TGG 0.385189 2.3:-7050445 MS.gene028704:intron
AGCAAGCTTGGCTTCCCCTT+TGG 0.388856 2.3:-7052297 MS.gene028704:intron
ATGTTGTTATGATTGCTAGA+AGG 0.399025 2.3:+7050730 None:intergenic
TGATCTGCCACTGGCCTCTC+AGG 0.407954 2.3:-7049297 MS.gene028704:intron
AGTCTTGGATTCAACTCTGT+TGG 0.412343 2.3:-7051993 MS.gene028704:CDS
GTGAGCAATTGATCCACAAC+AGG 0.435326 2.3:+7050489 None:intergenic
AATAATGTTCCTTCCATTGA+AGG 0.441447 2.3:+7049400 None:intergenic
AGAGATGGGGAAGTTCCAAT+TGG 0.441672 2.3:-7052391 MS.gene028704:CDS
TGAACAGAAAATGGGAGAGA+TGG 0.444209 2.3:-7052406 None:intergenic
GGATTTCTCAACTTGAGTCT+TGG 0.451090 2.3:-7052008 MS.gene028704:CDS
TTTAGTTTCTGGCCCTGTTG+TGG 0.461582 2.3:-7050502 MS.gene028704:CDS
ATGCACCAATAACACCCAAT+TGG 0.465218 2.3:+7052376 None:intergenic
TGTTGTTATGATTGCTAGAA+GGG 0.472038 2.3:+7050731 None:intergenic
TTGCTCCATGACCCCTTCAA+TGG 0.476747 2.3:-7049413 MS.gene028704:CDS
ATCTGTAGGCAAACACACTT+TGG 0.478717 2.3:+7050463 None:intergenic
GAACAGAAAATGGGAGAGAT+GGG 0.495964 2.3:-7052405 None:intergenic
GATTGCTAGAAGGGAAAGAA+TGG 0.497778 2.3:+7050740 None:intergenic
AAAAGAATTGCTGCTTGGAA+TGG 0.500961 2.3:+7050522 None:intergenic
TGCCTACAGATATTCTTCTA+CGG 0.509721 2.3:-7050451 MS.gene028704:CDS
AAAGCCTTAATGAGCAAGCT+TGG 0.509937 2.3:-7052309 MS.gene028704:CDS
GTTTCTAACATCACTGTGAA+TGG 0.512260 2.3:+7050971 None:intergenic
TCCTTCCATTGAAGGGGTCA+TGG 0.512676 2.3:+7049408 None:intergenic
AAACTAAAAGAATTGCTGCT+TGG 0.522046 2.3:+7050517 None:intergenic
TGGTGCATTGTTTCTCTCAG+TGG 0.522871 2.3:-7052361 MS.gene028704:CDS
CCTGTAACTTATCAAGTACT+AGG 0.524031 2.3:-7049476 MS.gene028704:CDS
CAGCTACAACGCTTACAAGT+TGG 0.531654 2.3:-7052148 MS.gene028704:CDS
GAGATGGGGAAGTTCCAATT+GGG 0.538065 2.3:-7052390 MS.gene028704:CDS
AAACAGCAATCAAGCAGGAT+AGG 0.551085 2.3:+7049540 None:intergenic
GAGTTGAAGATCAGTGATAG+AGG 0.551650 2.3:+7050776 None:intergenic
ATAATGTTCCTTCCATTGAA+GGG 0.551928 2.3:+7049401 None:intergenic
CACAGAAACAGCAATCAAGC+AGG 0.555984 2.3:+7049535 None:intergenic
GGCTTTGTTGCAGATGACAA+TGG 0.569540 2.3:+7052326 None:intergenic
ACTCAAGTTGAGAAATCCAA+TGG 0.576144 2.3:+7052013 None:intergenic
ATTATTAGGTGATCTGCCAC+TGG 0.583831 2.3:-7049306 MS.gene028704:CDS
GTAGGCAAACACACTTTGGT+TGG 0.586244 2.3:+7050467 None:intergenic
CTGCTTGGAATGGAGCTGAA+TGG 0.588829 2.3:+7050532 None:intergenic
TCCATGACCCCTTCAATGGA+AGG 0.594655 2.3:-7049409 MS.gene028704:CDS
TAATGTTCCTTCCATTGAAG+GGG 0.602234 2.3:+7049402 None:intergenic
AACAGAAAATGGGAGAGATG+GGG 0.636227 2.3:-7052404 None:intergenic
TTGAGTACCTGAGAGGCCAG+TGG 0.654961 2.3:+7049290 None:intergenic
TGTACCCAAAGCCTAGAACA+AGG 0.658318 2.3:+7049438 None:intergenic
GACCGTAGAAGAATATCTGT+AGG 0.659874 2.3:+7050449 None:intergenic
AAGCTAATTGAGTACCTGAG+AGG 0.699984 2.3:+7049283 None:intergenic
TGAGCAATTGATCCACAACA+GGG 0.700719 2.3:+7050490 None:intergenic
ATTGTTATGACTTACCAAAG+GGG 0.730749 2.3:+7052283 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAATACTTAATAAG+AGG - chr2.3:7051110-7051129 MS.gene028704:intron 10.0%
!! ATAAACTTAAAACATATATA+TGG + chr2.3:7049258-7049277 None:intergenic 10.0%
!! ATAATAAATACTTAATAAGA+GGG - chr2.3:7051111-7051130 MS.gene028704:intron 10.0%
!! TAGTAGAATAATAAATTATT+TGG + chr2.3:7048937-7048956 None:intergenic 10.0%
!!! TAAAACTTGATTTATTTTTT+TGG - chr2.3:7049891-7049910 MS.gene028704:intron 10.0%
!!! TAACATAAAAGATATTTTTA+TGG + chr2.3:7052065-7052084 None:intergenic 10.0%
!!! TATGATTATTATTTTGATTT+GGG - chr2.3:7048975-7048994 MS.gene028704:intron 10.0%
!!! TTAAATAAGATTTTATCTTT+TGG + chr2.3:7050990-7051009 None:intergenic 10.0%
!!! TTATGATTATTATTTTGATT+TGG - chr2.3:7048974-7048993 MS.gene028704:intron 10.0%
!!! TTTTTTTTTTTATTCTTTAC+AGG - chr2.3:7052292-7052311 MS.gene028704:intron 10.0%
!!! TTTTTTTTTTTTTGAAAAAC+AGG - chr2.3:7051574-7051593 MS.gene028704:intron 10.0%
!! AAAATATCAATGGTTATTTA+AGG + chr2.3:7050808-7050827 None:intergenic 15.0%
!! AAAATTAAAGAAATCAACAA+AGG + chr2.3:7051902-7051921 None:intergenic 15.0%
!! AAATTAAAGAAATCAACAAA+GGG + chr2.3:7051901-7051920 None:intergenic 15.0%
!! AACAAAAAGAAACAATTATT+AGG - chr2.3:7051827-7051846 MS.gene028704:intron 15.0%
!! AATGATTTATAATATGCTTA+TGG - chr2.3:7049817-7049836 MS.gene028704:intron 15.0%
!! ACATTTAAAAAATATCAAGT+TGG + chr2.3:7049449-7049468 None:intergenic 15.0%
!! CAAAAATCATATTTAATCAT+AGG - chr2.3:7051304-7051323 MS.gene028704:intron 15.0%
!!! AATTTAATTTCCCAAAATTA+AGG + chr2.3:7052023-7052042 None:intergenic 15.0%
!!! AATTTTTTTTTTGTCTATCT+TGG + chr2.3:7052232-7052251 None:intergenic 15.0%
!!! ACATAATGTTATAATTTGTA+AGG - chr2.3:7052128-7052147 MS.gene028704:CDS 15.0%
!!! ATAGAGAGAATTTTATTTTT+TGG + chr2.3:7050324-7050343 None:intergenic 15.0%
!!! ATTGTTGTTAATATTTATGA+TGG - chr2.3:7050484-7050503 MS.gene028704:CDS 15.0%
!!! ATTTAATTTCCCAAAATTAA+GGG + chr2.3:7052022-7052041 None:intergenic 15.0%
!!! ATTTTATAATTAGTATGAGA+GGG - chr2.3:7049706-7049725 MS.gene028704:intron 15.0%
!!! TACCAGATTAAATATATTTT+TGG + chr2.3:7051497-7051516 None:intergenic 15.0%
!!! TATTTTATAATTAGTATGAG+AGG - chr2.3:7049705-7049724 MS.gene028704:intron 15.0%
!!! TTTTTAAATGTAAATGTTAG+TGG - chr2.3:7051173-7051192 MS.gene028704:intron 15.0%
!! AAACAATATCAACACTTTAT+TGG + chr2.3:7049678-7049697 None:intergenic 20.0%
!! AGCAAATAATTAAATCAACT+AGG + chr2.3:7050739-7050758 None:intergenic 20.0%
!! ATAACTAAATTGTTGTAAAG+AGG + chr2.3:7052265-7052284 None:intergenic 20.0%
!! GACCAAAAATATATTTAATC+TGG - chr2.3:7051492-7051511 MS.gene028704:intron 20.0%
!! TAATATTTATGATGGCTTAA+AGG - chr2.3:7050492-7050511 MS.gene028704:CDS 20.0%
!! TGCATAATATAATATATGCA+AGG + chr2.3:7049942-7049961 None:intergenic 20.0%
!!! AACCTTTTTATGTGTATTTT+AGG - chr2.3:7049852-7049871 MS.gene028704:intron 20.0%
!!! AACTTGATTTATTTTTTTGG+TGG - chr2.3:7049894-7049913 MS.gene028704:intron 20.0%
!!! AATTTTTATGGACTAAATGA+GGG - chr2.3:7050908-7050927 MS.gene028704:intron 20.0%
!!! ATGAATTTGATTTTTGAAAG+AGG + chr2.3:7048905-7048924 None:intergenic 20.0%
!!! ATGCTTTTTGGATTTTTAAA+TGG - chr2.3:7049106-7049125 MS.gene028704:intron 20.0%
!!! CTATTTTTTTATTTGGCTAT+TGG + chr2.3:7051471-7051490 None:intergenic 20.0%
!!! CTTCATATTAATCAAGTTTT+TGG + chr2.3:7050001-7050020 None:intergenic 20.0%
!!! TAATTTTTATGGACTAAATG+AGG - chr2.3:7050907-7050926 MS.gene028704:intron 20.0%
!!! TGAATTTGATTTTTGAAAGA+GGG + chr2.3:7048904-7048923 None:intergenic 20.0%
!!! TGTCGATAAACTAATTTTTA+TGG - chr2.3:7050896-7050915 MS.gene028704:intron 20.0%
!!! TTGGTCTCTATTTTTTTATT+TGG + chr2.3:7051478-7051497 None:intergenic 20.0%
!!! TTTGAATTGTCTTTTTTCTT+TGG - chr2.3:7051972-7051991 MS.gene028704:intron 20.0%
! ATAAATACACATTGAGAAGA+AGG + chr2.3:7051425-7051444 None:intergenic 25.0%
! ATATAATATATGCAAGGTAC+AGG + chr2.3:7049936-7049955 None:intergenic 25.0%
! GCTAAAACTACAAACAAAAT+GGG + chr2.3:7049210-7049229 None:intergenic 25.0%
! GTTAAAATTGCCATATGAAA+AGG - chr2.3:7051532-7051551 MS.gene028704:intron 25.0%
! TATAATATATGCAAGGTACA+GGG + chr2.3:7049935-7049954 None:intergenic 25.0%
! TATCGAAGACAAAATATCAA+TGG + chr2.3:7050818-7050837 None:intergenic 25.0%
! TGCTAAAACTACAAACAAAA+TGG + chr2.3:7049211-7049230 None:intergenic 25.0%
!! AACATTTTACCGTTTAAATC+CGG - chr2.3:7051385-7051404 MS.gene028704:intron 25.0%
!! AATAAACATGCCCTTAATTT+TGG - chr2.3:7052009-7052028 MS.gene028704:CDS 25.0%
!! AGTCTCATAGTTGATTTAAA+TGG - chr2.3:7051028-7051047 MS.gene028704:intron 25.0%
!! ATAAACATGCCCTTAATTTT+GGG - chr2.3:7052010-7052029 MS.gene028704:CDS 25.0%
!! ATGAAAACAATCATGCTTTT+TGG - chr2.3:7049094-7049113 MS.gene028704:intron 25.0%
!! GAATTGTTTCTTTAGGAAAA+TGG + chr2.3:7050201-7050220 None:intergenic 25.0%
!! GATTATCAATCCTTTTCATA+TGG + chr2.3:7051545-7051564 None:intergenic 25.0%
!! GTATTTATTCGACTATGTTT+TGG - chr2.3:7051437-7051456 MS.gene028704:intron 25.0%
!! TCTGTCTAAAATATCAACAT+AGG + chr2.3:7049378-7049397 None:intergenic 25.0%
!! TTGATATTTTGTCTTCGATA+TGG - chr2.3:7050818-7050837 MS.gene028704:CDS 25.0%
!! TTTACCTGAATTGTTTCTTT+AGG + chr2.3:7050208-7050227 None:intergenic 25.0%
!! TTTTATAGACAAATGCAAGT+GGG - chr2.3:7050948-7050967 MS.gene028704:CDS 25.0%
!! TTTTCCTAAAGAAACAATTC+AGG - chr2.3:7050201-7050220 MS.gene028704:intron 25.0%
!! TTTTTAAATGGTGTTTCCAT+TGG - chr2.3:7049118-7049137 MS.gene028704:intron 25.0%
!! TTTTTATAGACAAATGCAAG+TGG - chr2.3:7050947-7050966 MS.gene028704:CDS 25.0%
!!! GTCATTTTAGTCAAAAGAAA+CGG - chr2.3:7049595-7049614 MS.gene028704:intron 25.0%
!!! TTTTGACTAAAATGACTTGT+AGG + chr2.3:7049591-7049610 None:intergenic 25.0%
AAACTAAAAGAATTGCTGCT+TGG + chr2.3:7050633-7050652 None:intergenic 30.0%
AAACTACAAACAAAATGGGA+CGG + chr2.3:7049206-7049225 None:intergenic 30.0%
AATAATGTTCCTTCCATTGA+AGG + chr2.3:7051750-7051769 None:intergenic 30.0%
AATGTTACAACCAAGTTGTT+TGG - chr2.3:7051355-7051374 MS.gene028704:intron 30.0%
ACATTCCTTCAAAAAAGAGT+TGG + chr2.3:7049478-7049497 None:intergenic 30.0%
ATAATGTTCCTTCCATTGAA+GGG + chr2.3:7051749-7051768 None:intergenic 30.0%
ATGTTGTTATGATTGCTAGA+AGG + chr2.3:7050420-7050439 None:intergenic 30.0%
ATTGTTATGACTTACCAAAG+GGG + chr2.3:7048867-7048886 None:intergenic 30.0%
CGAGTCTAAAAAATTTAGCA+AGG - chr2.3:7052382-7052401 MS.gene028704:CDS 30.0%
CGCCTAAAATACACATAAAA+AGG + chr2.3:7049857-7049876 None:intergenic 30.0%
CTACCATAAAGGATACAATT+TGG + chr2.3:7050450-7050469 None:intergenic 30.0%
GAAGGAAAAATTTAGTAACC+CGG + chr2.3:7051407-7051426 None:intergenic 30.0%
GATTGTTATGACTTACCAAA+GGG + chr2.3:7048868-7048887 None:intergenic 30.0%
GGTCAAAGTTGTGTATTATA+TGG - chr2.3:7051049-7051068 MS.gene028704:intron 30.0%
TAGCCAAATTGTATCCTTTA+TGG - chr2.3:7050444-7050463 MS.gene028704:intron 30.0%
TATTTATGATGGCTTAAAGG+TGG - chr2.3:7050495-7050514 MS.gene028704:CDS 30.0%
TCCAACTGAATATTTGCTTT+GGG - chr2.3:7051279-7051298 MS.gene028704:intron 30.0%
TCGACATTTAGTCCTTAATT+TGG + chr2.3:7050882-7050901 None:intergenic 30.0%
TCTCTATTCCTATTACTTGT+TGG - chr2.3:7050337-7050356 MS.gene028704:intron 30.0%
TGATTGTTATGACTTACCAA+AGG + chr2.3:7048869-7048888 None:intergenic 30.0%
TGTTGTTATGATTGCTAGAA+GGG + chr2.3:7050419-7050438 None:intergenic 30.0%
TTACATAGTAGCTACCATAA+AGG + chr2.3:7050461-7050480 None:intergenic 30.0%
TTCAATGGAAGGAACATTAT+TGG - chr2.3:7051749-7051768 MS.gene028704:intron 30.0%
TTCCAACTGAATATTTGCTT+TGG - chr2.3:7051278-7051297 MS.gene028704:intron 30.0%
TTTAGTAACCCGGATTTAAA+CGG + chr2.3:7051397-7051416 None:intergenic 30.0%
! AAGCTTCTTTTGTATTGTGT+TGG + chr2.3:7050569-7050588 None:intergenic 30.0%
! ACATTTTACCGTTTAAATCC+GGG - chr2.3:7051386-7051405 MS.gene028704:intron 30.0%
! ATACTCATATTTCTGCTTAG+AGG - chr2.3:7051802-7051821 MS.gene028704:intron 30.0%
! CATGATTGTTTTCATGTCAA+TGG + chr2.3:7049089-7049108 None:intergenic 30.0%
! GATCTTCAACTCAATTTTGT+GGG - chr2.3:7050382-7050401 MS.gene028704:intron 30.0%
! TGATCTTCAACTCAATTTTG+TGG - chr2.3:7050381-7050400 MS.gene028704:intron 30.0%
! TTATTTGGCTATTGGTCTAA+TGG + chr2.3:7051463-7051482 None:intergenic 30.0%
! TTCGATATGGTGATTTTGAA+TGG - chr2.3:7050831-7050850 MS.gene028704:intron 30.0%
! TTGATACTTTTCTTGTCTTG+TGG + chr2.3:7050102-7050121 None:intergenic 30.0%
!! ATGAATGTGGACTAAACTTT+TGG + chr2.3:7049339-7049358 None:intergenic 30.0%
!! TGAATGTGGACTAAACTTTT+GGG + chr2.3:7049338-7049357 None:intergenic 30.0%
!! TGTTTTCATGTCAATGGATT+TGG + chr2.3:7049083-7049102 None:intergenic 30.0%
!!! ACTGATTGCTATTTTTGGAA+TGG - chr2.3:7051775-7051794 MS.gene028704:intron 30.0%
!!! ATGTTTTTTCCAACCAAAAG+GGG + chr2.3:7052338-7052357 None:intergenic 30.0%
!!! CATGTTTTTTCCAACCAAAA+GGG + chr2.3:7052339-7052358 None:intergenic 30.0%
!!! CTGATTGCTATTTTTGGAAT+GGG - chr2.3:7051776-7051795 MS.gene028704:intron 30.0%
!!! GGAATACTGATTGCTATTTT+TGG - chr2.3:7051770-7051789 MS.gene028704:intron 30.0%
!!! TAAGACCAACTCTTTTTTGA+AGG - chr2.3:7049470-7049489 MS.gene028704:CDS 30.0%
!!! TTCAGCACGTTTTTAGTTAT+TGG - chr2.3:7051638-7051657 MS.gene028704:intron 30.0%
ACACCAAGAAGTTCTATATG+AGG + chr2.3:7051259-7051278 None:intergenic 35.0%
AGACCTCATATAGAACTTCT+TGG - chr2.3:7051253-7051272 MS.gene028704:intron 35.0%
CCAACTGAATATTTGCTTTG+GGG - chr2.3:7051280-7051299 MS.gene028704:intron 35.0%
CCTAGTACTTGATAAGTTAC+AGG + chr2.3:7051674-7051693 None:intergenic 35.0%
CCTGTAACTTATCAAGTACT+AGG - chr2.3:7051671-7051690 MS.gene028704:intron 35.0%
CTCCTCAAATCACCAAATTA+AGG - chr2.3:7050867-7050886 MS.gene028704:intron 35.0%
GTTCTAACAACCAAACAACT+TGG + chr2.3:7051368-7051387 None:intergenic 35.0%
GTTTCTAACATCACTGTGAA+TGG + chr2.3:7050179-7050198 None:intergenic 35.0%
TAATGTTCCTTCCATTGAAG+GGG + chr2.3:7051748-7051767 None:intergenic 35.0%
TATATGAGGTCTAGACATCT+AGG + chr2.3:7051245-7051264 None:intergenic 35.0%
TGCCTACAGATATTCTTCTA+CGG - chr2.3:7050696-7050715 MS.gene028704:intron 35.0%
! AAAAGAATTGCTGCTTGGAA+TGG + chr2.3:7050628-7050647 None:intergenic 35.0%
! AAGTTCCAATTGGGTGTTAT+TGG - chr2.3:7048766-7048785 MS.gene028704:CDS 35.0%
! CACATTTTGTACACTTCATG+TGG - chr2.3:7049033-7049052 MS.gene028704:intron 35.0%
! CTTAATTTGGTGATTTGAGG+AGG + chr2.3:7050869-7050888 None:intergenic 35.0%
! GTCCTTAATTTGGTGATTTG+AGG + chr2.3:7050872-7050891 None:intergenic 35.0%
! TTCCTATTACTTGTTGGAGT+TGG - chr2.3:7050343-7050362 MS.gene028704:intron 35.0%
!! ACTCAAGTTGAGAAATCCAA+TGG + chr2.3:7049137-7049156 None:intergenic 35.0%
!! CCTTTTGGTTGGAAAAAACA+TGG - chr2.3:7052337-7052356 MS.gene028704:CDS 35.0%
!!! CCATGTTTTTTCCAACCAAA+AGG + chr2.3:7052340-7052359 None:intergenic 35.0%
!!! GCAGCAATTCTTTTAGTTTC+TGG - chr2.3:7050634-7050653 MS.gene028704:intron 35.0%
AAACAGCAATCAAGCAGGAT+AGG + chr2.3:7051610-7051629 None:intergenic 40.0%
AAAGCCTTAATGAGCAAGCT+TGG - chr2.3:7048838-7048857 MS.gene028704:intron 40.0%
AAGCTAATTGAGTACCTGAG+AGG + chr2.3:7051867-7051886 None:intergenic 40.0%
AAGGTACAGGGTTCAAATCT+TGG + chr2.3:7049923-7049942 None:intergenic 40.0%
AGTCTTGGATTCAACTCTGT+TGG - chr2.3:7049154-7049173 MS.gene028704:intron 40.0%
ATCTGTAGGCAAACACACTT+TGG + chr2.3:7050687-7050706 None:intergenic 40.0%
ATGCACCAATAACACCCAAT+TGG + chr2.3:7048774-7048793 None:intergenic 40.0%
ATTATTAGGTGATCTGCCAC+TGG - chr2.3:7051841-7051860 MS.gene028704:intron 40.0%
CACCAACTCCAACAAGTAAT+AGG + chr2.3:7050348-7050367 None:intergenic 40.0%
CAGAGATGCACAAATGAATG+TGG + chr2.3:7049352-7049371 None:intergenic 40.0%
CAGATATTCTTCTACGGTCT+TGG - chr2.3:7050702-7050721 MS.gene028704:intron 40.0%
CCCCAAAGCAAATATTCAGT+TGG + chr2.3:7051283-7051302 None:intergenic 40.0%
GACCGTAGAAGAATATCTGT+AGG + chr2.3:7050701-7050720 None:intergenic 40.0%
GAGTTGAAGATCAGTGATAG+AGG + chr2.3:7050374-7050393 None:intergenic 40.0%
GATTGCTAGAAGGGAAAGAA+TGG + chr2.3:7050410-7050429 None:intergenic 40.0%
GGATTTCTCAACTTGAGTCT+TGG - chr2.3:7049139-7049158 MS.gene028704:intron 40.0%
TGAGCAATTGATCCACAACA+GGG + chr2.3:7050660-7050679 None:intergenic 40.0%
! CTAGAACAAGGCATGTTTTG+AGG + chr2.3:7051700-7051719 None:intergenic 40.0%
! CTCAAAACATGCCTTGTTCT+AGG - chr2.3:7051698-7051717 MS.gene028704:intron 40.0%
!!! CAACTCTGTTGGCTTTTATC+AGG - chr2.3:7049165-7049184 MS.gene028704:intron 40.0%
AGAGATGGGGAAGTTCCAAT+TGG - chr2.3:7048756-7048775 MS.gene028704:CDS 45.0%
CACAGAAACAGCAATCAAGC+AGG + chr2.3:7051615-7051634 None:intergenic 45.0%
CAGCTACAACGCTTACAAGT+TGG - chr2.3:7048999-7049018 MS.gene028704:intron 45.0%
GACAAATGCAAGTGGGAACT+CGG - chr2.3:7050955-7050974 MS.gene028704:CDS 45.0%
GAGATGGGGAAGTTCCAATT+GGG - chr2.3:7048757-7048776 MS.gene028704:CDS 45.0%
GTAGGCAAACACACTTTGGT+TGG + chr2.3:7050683-7050702 None:intergenic 45.0%
GTGAGCAATTGATCCACAAC+AGG + chr2.3:7050661-7050680 None:intergenic 45.0%
TACCAACTGAGCTAAGCTCA+CGG - chr2.3:7049969-7049988 MS.gene028704:intron 45.0%
TGTACCCAAAGCCTAGAACA+AGG + chr2.3:7051712-7051731 None:intergenic 45.0%
! ACATGCCTTGTTCTAGGCTT+TGG - chr2.3:7051704-7051723 MS.gene028704:intron 45.0%
! CAAAGATAGCTCACCCCTTT+TGG - chr2.3:7052322-7052341 MS.gene028704:CDS 45.0%
! CATGCCTTGTTCTAGGCTTT+GGG - chr2.3:7051705-7051724 MS.gene028704:intron 45.0%
! GAAGCCAAGCTTGCTCATTA+AGG + chr2.3:7048845-7048864 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG + chr2.3:7049969-7049988 None:intergenic 45.0%
! TGGTGCATTGTTTCTCTCAG+TGG - chr2.3:7048786-7048805 MS.gene028704:CDS 45.0%
!! GGCTTTGTTGCAGATGACAA+TGG + chr2.3:7048824-7048843 None:intergenic 45.0%
!! TTTAGTTTCTGGCCCTGTTG+TGG - chr2.3:7050645-7050664 MS.gene028704:intron 45.0%
!!! GAACAAGGCATGTTTTGAGG+TGG + chr2.3:7051697-7051716 None:intergenic 45.0%
!! ATTCATTAAATAATAAATAA+TGG - chr2.3:7050262-7050281 MS.gene028704:intron 5.0%
ACCAACTGAGCTAAGCTCAC+GGG - chr2.3:7049970-7049989 MS.gene028704:intron 50.0%
CTGCTTGGAATGGAGCTGAA+TGG + chr2.3:7050618-7050637 None:intergenic 50.0%
TCCATGACCCCTTCAATGGA+AGG - chr2.3:7051738-7051757 MS.gene028704:intron 50.0%
TCCTTCCATTGAAGGGGTCA+TGG + chr2.3:7051742-7051761 None:intergenic 50.0%
TTGCTCCATGACCCCTTCAA+TGG - chr2.3:7051734-7051753 MS.gene028704:intron 50.0%
! GATAGCTCACCCCTTTTGGT+TGG - chr2.3:7052326-7052345 MS.gene028704:CDS 50.0%
AGCAAGCTTGGCTTCCCCTT+TGG - chr2.3:7048850-7048869 MS.gene028704:intron 55.0%
CCAACTGAGCTAAGCTCACG+GGG - chr2.3:7049971-7049990 MS.gene028704:intron 55.0%
TTGAGTACCTGAGAGGCCAG+TGG + chr2.3:7051860-7051879 None:intergenic 55.0%
CCCCGTGAGCTTAGCTCAGT+TGG + chr2.3:7049974-7049993 None:intergenic 60.0%
! TGATCTGCCACTGGCCTCTC+AGG - chr2.3:7051850-7051869 MS.gene028704:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 7048751 7052418 7048751 ID=MS.gene028704
chr2.3 mRNA 7048751 7052418 7048751 ID=MS.gene028704.t1;Parent=MS.gene028704
chr2.3 exon 7052298 7052418 7052298 ID=MS.gene028704.t1.exon1;Parent=MS.gene028704.t1
chr2.3 CDS 7052298 7052418 7052298 ID=cds.MS.gene028704.t1;Parent=MS.gene028704.t1
chr2.3 exon 7051983 7052167 7051983 ID=MS.gene028704.t1.exon2;Parent=MS.gene028704.t1
chr2.3 CDS 7051983 7052167 7051983 ID=cds.MS.gene028704.t1;Parent=MS.gene028704.t1
chr2.3 exon 7050947 7051014 7050947 ID=MS.gene028704.t1.exon3;Parent=MS.gene028704.t1
chr2.3 CDS 7050947 7051014 7050947 ID=cds.MS.gene028704.t1;Parent=MS.gene028704.t1
chr2.3 exon 7050716 7050848 7050716 ID=MS.gene028704.t1.exon4;Parent=MS.gene028704.t1
chr2.3 CDS 7050716 7050848 7050716 ID=cds.MS.gene028704.t1;Parent=MS.gene028704.t1
chr2.3 exon 7050446 7050607 7050446 ID=MS.gene028704.t1.exon5;Parent=MS.gene028704.t1
chr2.3 CDS 7050446 7050607 7050446 ID=cds.MS.gene028704.t1;Parent=MS.gene028704.t1
chr2.3 exon 7049298 7049573 7049298 ID=MS.gene028704.t1.exon6;Parent=MS.gene028704.t1
chr2.3 CDS 7049298 7049573 7049298 ID=cds.MS.gene028704.t1;Parent=MS.gene028704.t1
chr2.3 exon 7048751 7048855 7048751 ID=MS.gene028704.t1.exon7;Parent=MS.gene028704.t1
chr2.3 CDS 7048751 7048855 7048751 ID=cds.MS.gene028704.t1;Parent=MS.gene028704.t1
Gene Sequence

>MS.gene028704

ATGGGAGAGATGGGGAAGTTCCAATTGGGTGTTATTGGTGCATTGTTTCTCTCAGTGGCTTCTTCTGTCTCCATTGTCATCTGCAACAAAGCCTTAATGAGCAAGCTTGGCTTCCCCTTTGGTAAGTCATAACAATCATTTTGTTTCTCACCCTCTTTCAAAAATCAAATTCATAATTAGTAACCAAATAATTTATTATTCTACTAACTTAAAATTATTATCATTATGATTATTATTTTGATTTGGGTCAGCTACAACGCTTACAAGTTGGCATTTGATGCTCACATTTTGTACACTTCATGTGGCTCAACGTCTAAACTTGTTCGTGACCAAATCCATTGACATGAAAACAATCATGCTTTTTGGATTTTTAAATGGTGTTTCCATTGGATTTCTCAACTTGAGTCTTGGATTCAACTCTGTTGGCTTTTATCAGGTTAAGAATACTTACACCGTCCCATTTTGTTTGTAGTTTTAGCAACAAAATATGTAGTATTAGTTAGTCCATATATATGTTTTAAGTTTATGTGTGCATCAAATGTTGAGTTAACTCTATCTAAAATGTTCATGTGACACAGACATATCCCAAAAGTTTAGTCCACATTCATTTGTGCATCTCTGCTACCTATGTTGATATTTTAGACAGAGATTTGACTAAAAGAACGAACTTATTATGATGTTAGTCATGTAATAGACCAACTTGATATTTTTTAAATGTATAAGACCAACTCTTTTTTGAAGGAATGTATAAAATCAACTTAAAATCTAAAATAAAATAAGAGACTAAAAATGCAATTTAGTCTATAAAAAAATATTTATTTTATTATATTAATTACTCCTACAAGTCATTTTAGTCAAAAGAAACGGTTATGTCTTATATGATTTTTTTATTTTTTTTGACAAGTTATATGAAATTTTATCATTCCAATAAAGTGTTGATATTGTTTTCTATTATATTTTATAATTAGTATGAGAGGGTAAACGATAGTTTAGAAAAACAGATATTATTTTTTATGAAACTTATAATTTTATTAATTATTTTTTTTGTTCATATATCAAAATCTTAAATGATTTATAATATGCTTATGGAAATATATTTGCAACCTTTTTATGTGTATTTTAGGCGATGTACTTTTTTTCTAAAACTTGATTTATTTTTTTGGTGGTAGCCAAGATTTGAACCCTGTACCTTGCATATATTATATTATGCATTGTCCTTACCAACTGAGCTAAGCTCACGGGGACTTCCAAAAACTTGATTAATATGAAGATAGTAATTATGAAGTTTTTCTTGTTTTTTTTTAACATCAAAATTTATTAGAATAATGAGAGACTAAAGAATACTTAACCACAAGACAAGAAAAGTATCAAAATGATTGTAGCTTTGAAATTATTGCTTTGCAGATGACAAAACTTGCGATTATACCATTCACAGTGATGTTAGAAACCATTTTCCTAAAGAAACAATTCAGGTAAAAATTGAATTAAAATACTAAGTACTTGTTTATCTTATTCATTAAATAATAAATAATGGTCACATGCTAATAATCTCTTGTGCTAATTCATGCAGCCAAAAAATAAAATTCTCTCTATTCCTATTACTTGTTGGAGTTGGTGTTGCCTCTATCACTGATCTTCAACTCAATTTTGTGGGAACCATTCTTTCCCTTCTAGCAATCATAACAACATGTGTTAGCCAAATTGTATCCTTTATGGTAGCTACTATGTAATTTATTGTTGTTAATATTTATGATGGCTTAAAGGTGGAGAAGATTATATATTTAGATTTCTTAACTTAGTGCTTAATTTAGCTAACCAACACAATACAAAAGAAGCTTAATGTTTCTTCTACACAGTTGCTCTACCATTCAGCTCCATTCCAAGCAGCAATTCTTTTAGTTTCTGGCCCTGTTGTGGATCAATTGCTCACCAACCAAAGTGTGTTTGCCTACAGATATTCTTCTACGGTCTTGGTAATGTTCAATCCTAGTTGATTTAATTATTTGCTATATTATACGACTTAAATATTTTTATACTCTTCTATTATGTTTAGTCCTTAAATAACCATTGATATTTTGTCTTCGATATGGTGATTTTGAATGGATTAAACTTTAGCCTCCTCAAATCACCAAATTAAGGACTAAATGTCGATAAACTAATTTTTATGGACTAAATGAGGGTACTTTATAGTTTTTTTTTTTATAGACAAATGCAAGTGGGAACTCGGATGCGAGAACCAAAAGATAAAATCTTATTTAATTAGTTGAATCAGAGATTAGTCTCATAGTTGATTTAAATGGTCAAAGTTGTGTATTATATGGTAGACTCATTTATGTGTCAAAGTAGTGCATTTCAAAATAATAATAAATACTTAATAAGAGGGTGTTTTATATGCAAATGTTTTTTTTGTTAAGAAGAGTTGTTTTTAAATGTAAATGTTAGTGGCTAATTTGTTAATGTGATGAGAAAATGTTAGTTGCAAAAATCAAAACCTAGATGTCTAGACCTCATATAGAACTTCTTGGTGTTCCAACTGAATATTTGCTTTGGGGACAAAAATCATATTTAATCATAGGATAAGATAGAGACTAAAAATTTGTTTACAATGTTACAACCAAGTTGTTTGGTTGTTAGAACATTTTACCGTTTAAATCCGGGTTACTAAATTTTTCCTTCTTCTCAATGTGTATTTATTCGACTATGTTTTGGCCATTAGACCAATAGCCAAATAAAAAAATAGAGACCAAAAATATATTTAATCTGGTATGAATGTTTACTATCGTTAAAATTGCCATATGAAAAGGATTGATAATCTCGAGCATTTTTTTTTTTTTTTGAAAAACAGGCATTCATCATCCTATCCTGCTTGATTGCTGTTTCTGTGAACTTCAGCACGTTTTTAGTTATTGGCAAAACATCACCTGTAACTTATCAAGTACTAGGCCACCTCAAAACATGCCTTGTTCTAGGCTTTGGGTACACATTGCTCCATGACCCCTTCAATGGAAGGAACATTATTGGAATACTGATTGCTATTTTTGGAATGGGCTTATACTCATATTTCTGCTTAGAGGAGAACAAAAAGAAACAATTATTAGGTGATCTGCCACTGGCCTCTCAGGTACTCAATTAGCTTCAAGTTCTTCTCCCTTTGTTGATTTCTTTAATTTTATTTGATATATTTATTTTGTATAATATCAATATACAAAGAGATATATCAATTTGAATTGTCTTTTTTCTTTGGTAAAAATACTTTTTAATAAACATGCCCTTAATTTTGGGAAATTAAATTAAACTATTAGTAGTATAGTCCATAAAAATATCTTTTATGTTAAAAGCAAAATATTATATTGTTTGTATCATTGAAAAATACAAGCACATAATGTTATAATTTGTAAGGCAAAATTCACAAACATTTATGCTTATATCTAAAAGAAATAAATAAGTCAACTAAATAAATAAATAATTCAACTAAAATCCAAGATAGACAAAAAAAAAATTGTTTAAAACTCCTCTTTACAACAATTTAGTTATTCAATAATTTTTTTTTTTATTCTTTACAGGTTAAAGACAAAGATAGCTCACCCCTTTTGGTTGGAAAAAACATGGATAATCAAGAAGATGAAAATCACGAGTCTAAAAAATTTAGCAAGGATTCTACTAATTAA

Protein sequence

>MS.gene028704.t1

MGEMGKFQLGVIGALFLSVASSVSIVICNKALMSKLGFPFATTLTSWHLMLTFCTLHVAQRLNLFVTKSIDMKTIMLFGFLNGVSIGFLNLSLGFNSVGFYQMTKLAIIPFTVMLETIFLKKQFSQKIKFSLFLLLVGVGVASITDLQLNFVGTILSLLAIITTCVSQILTNTIQKKLNVSSTQLLYHSAPFQAAILLVSGPVVDQLLTNQSVFAYRYSSTVLAFIILSCLIAVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLGFGYTLLHDPFNGRNIIGILIAIFGMGLYSYFCLEENKKKQLLGDLPLASQVKDKDSSPLLVGKNMDNQEDENHESKKFSKDSTN