Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028764.t1 | XP_003597149.2 | 99.1 | 819 | 6 | 1 | 1 | 819 | 1 | 818 | 0.00E+00 | 1620.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028764.t1 | Q8RWZ7 | 80.6 | 815 | 155 | 1 | 1 | 812 | 1 | 815 | 0.0e+00 | 1344.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028764.t1 | G7IU50 | 99.1 | 819 | 6 | 1 | 1 | 819 | 1 | 818 | 0.0e+00 | 1620.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene028764 | MS.gene003676 | PPI |
MS.gene028764 | MS.gene50737 | PPI |
MS.gene028764 | MS.gene23322 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028764.t1 | MTR_2g093210 | 99.145 | 819 | 6 | 1 | 1 | 819 | 1 | 818 | 0.0 | 1689 |
MS.gene028764.t1 | MTR_2g093210 | 99.092 | 771 | 6 | 1 | 49 | 819 | 9 | 778 | 0.0 | 1594 |
MS.gene028764.t1 | MTR_4g061090 | 85.749 | 821 | 114 | 2 | 1 | 819 | 1 | 820 | 0.0 | 1477 |
MS.gene028764.t1 | MTR_2g093210 | 99.100 | 667 | 5 | 1 | 1 | 667 | 1 | 666 | 0.0 | 1378 |
MS.gene028764.t1 | MTR_2g093210 | 99.214 | 509 | 3 | 1 | 1 | 509 | 1 | 508 | 0.0 | 1054 |
MS.gene028764.t1 | MTR_4g071070 | 62.515 | 811 | 302 | 2 | 9 | 819 | 12 | 820 | 0.0 | 1046 |
MS.gene028764.t1 | MTR_3g112500 | 59.639 | 721 | 291 | 0 | 11 | 731 | 1 | 721 | 0.0 | 903 |
MS.gene028764.t1 | MTR_2g438500 | 76.364 | 55 | 13 | 0 | 1 | 55 | 1 | 55 | 9.70e-21 | 87.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028764.t1 | AT2G28520 | 80.613 | 815 | 155 | 1 | 1 | 812 | 1 | 815 | 0.0 | 1362 |
MS.gene028764.t1 | AT4G39080 | 63.827 | 810 | 290 | 3 | 11 | 819 | 14 | 821 | 0.0 | 1066 |
MS.gene028764.t1 | AT2G21410 | 62.299 | 809 | 303 | 1 | 11 | 819 | 15 | 821 | 0.0 | 1059 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAGCTTCTTTAGTATAAA+AGG | 0.189814 | 2.3:-8444443 | None:intergenic |
TCCTATTTGCTATGATGTTT+GGG | 0.194418 | 2.3:+8441780 | MS.gene028764:CDS |
TTCCTATTTGCTATGATGTT+TGG | 0.212932 | 2.3:+8441779 | MS.gene028764:CDS |
TCATGGAATTTGCCTGTTGC+TGG | 0.216783 | 2.3:+8441811 | MS.gene028764:CDS |
ATCTTCGACTTTGGGCATTA+AGG | 0.218922 | 2.3:+8445016 | MS.gene028764:CDS |
TGCTATGATGTTTGGGGACT+GGG | 0.219415 | 2.3:+8441787 | MS.gene028764:CDS |
AGTCATGGCCGTGCTGTTTC+AGG | 0.224391 | 2.3:+8438682 | MS.gene028764:CDS |
CATCGTGCAGTTTCCTATTT+AGG | 0.231475 | 2.3:+8435107 | MS.gene028764:CDS |
GCATCAACAATTTCCTGATA+TGG | 0.233495 | 2.3:-8440421 | None:intergenic |
TATTTCAATGCTCGTTTCTT+TGG | 0.246161 | 2.3:+8443981 | MS.gene028764:CDS |
CCAGAGAACATTTGTTAATC+AGG | 0.254589 | 2.3:+8436550 | MS.gene028764:CDS |
AAACTGCAGGATTTGCTTCT+TGG | 0.274500 | 2.3:-8441736 | None:intergenic |
AGCTTCATGGAGATGCTATT+TGG | 0.274639 | 2.3:+8442273 | MS.gene028764:CDS |
GCAGATTGTGTTATTGCTTT+TGG | 0.282862 | 2.3:+8444385 | MS.gene028764:intron |
CGGCATCATATCTTCGACTT+TGG | 0.286816 | 2.3:+8445007 | MS.gene028764:CDS |
CTCATACTTGAAGTGGTCTT+TGG | 0.287606 | 2.3:-8444278 | None:intergenic |
TTGGAAGCTCACTGGATATA+AGG | 0.301104 | 2.3:+8444000 | MS.gene028764:CDS |
CTTAAACCAGATGTATTTGA+TGG | 0.303947 | 2.3:-8438913 | None:intergenic |
GTTAAAGAAGCAAATGAAAA+AGG | 0.305541 | 2.3:-8446020 | None:intergenic |
ATCTTCCTTAACAGTCTGTT+TGG | 0.313649 | 2.3:+8444132 | MS.gene028764:CDS |
GCAATCATATAATGAACTTC+TGG | 0.316325 | 2.3:+8438288 | MS.gene028764:CDS |
TTGGTGAGAATCAGTTGTTC+TGG | 0.316925 | 2.3:+8444253 | MS.gene028764:CDS |
ACCAGATGTATTTGATGGTT+GGG | 0.322783 | 2.3:-8438908 | None:intergenic |
TGCCTTTATATTACTTATGA+TGG | 0.328494 | 2.3:+8445908 | MS.gene028764:CDS |
TTGCAGACCATCTAACAAAA+TGG | 0.329369 | 2.3:+8439922 | MS.gene028764:CDS |
ATCAGGGATGCACATACTAT+TGG | 0.331832 | 2.3:+8443810 | MS.gene028764:intron |
CATTGACTTAGAGGATTTAG+AGG | 0.333860 | 2.3:+8438003 | MS.gene028764:CDS |
TTGCTATGATGTTTGGGGAC+TGG | 0.334388 | 2.3:+8441786 | MS.gene028764:CDS |
TTGCCGAAGTTTGTCACTAT+TGG | 0.334677 | 2.3:-8438269 | None:intergenic |
GACAGCATCTTTACTTGAAC+AGG | 0.340198 | 2.3:+8438753 | MS.gene028764:CDS |
TTCATGCCCTACGGCTTCAC+TGG | 0.340360 | 2.3:+8445949 | MS.gene028764:CDS |
TGATGTTCCCTGGCAGAATC+TGG | 0.341635 | 2.3:-8444904 | None:intergenic |
CCCTTCTCATTATTGTTAAG+TGG | 0.341778 | 2.3:+8444163 | MS.gene028764:CDS |
CCAGAAGCTGGGAAGCTTCA+TGG | 0.342044 | 2.3:+8442260 | MS.gene028764:intron |
GAAAGTGCTGCTTCTTGCTT+GGG | 0.345164 | 2.3:+8445162 | MS.gene028764:CDS |
TTCTTTAGTATAAAAGGCTT+TGG | 0.347406 | 2.3:-8444437 | None:intergenic |
TTTGTAAATCCAAGGCTCTT+AGG | 0.353537 | 2.3:+8438953 | MS.gene028764:CDS |
GCAACCGGACATTGACTTAG+AGG | 0.355051 | 2.3:+8437994 | MS.gene028764:CDS |
CTCCATCATAAGTAATATAA+AGG | 0.355484 | 2.3:-8445910 | None:intergenic |
AAGACCGAGTTCACCTAAAT+AGG | 0.358093 | 2.3:-8435120 | None:intergenic |
CTGAAAATTTGTGAGGCATT+TGG | 0.363681 | 2.3:+8439293 | MS.gene028764:CDS |
AGATCATCTGTGGCACAAAT+TGG | 0.368502 | 2.3:-8444113 | None:intergenic |
AGTCAATGTCCGGTTGCAAT+AGG | 0.374173 | 2.3:-8437988 | None:intergenic |
CCATGCTTACTTATATCTTC+AGG | 0.374589 | 2.3:-8439335 | None:intergenic |
CGATTTCAAGGTCGTAGTTA+TGG | 0.376632 | 2.3:+8444844 | MS.gene028764:CDS |
AAAACCATCTCGGTTGTAAC+AGG | 0.382225 | 2.3:-8439054 | None:intergenic |
AACTGCACGATGAGCGGATT+CGG | 0.388778 | 2.3:-8435096 | None:intergenic |
GATGCAGGAGGCACTGCAAC+GGG | 0.388884 | 2.3:+8440300 | MS.gene028764:intron |
GGCATCATATCTTCGACTTT+GGG | 0.389261 | 2.3:+8445008 | MS.gene028764:CDS |
TGGAAGAAAGCGCCTTGTTC+CGG | 0.389383 | 2.3:-8439899 | None:intergenic |
ATTCCACTGCATCCATTTGA+TGG | 0.392806 | 2.3:-8440360 | None:intergenic |
CACTTTCACAAATCCATATC+AGG | 0.393837 | 2.3:+8440408 | MS.gene028764:CDS |
CAGCTAGGATCCACACCAAA+TGG | 0.395521 | 2.3:-8443858 | None:intergenic |
GAATTAATGCTCCCAGCAAC+AGG | 0.399595 | 2.3:-8441823 | None:intergenic |
GACATTGCACAGCGATTTCA+AGG | 0.400831 | 2.3:+8444832 | MS.gene028764:intron |
AGAAAGTGCTGCTTCTTGCT+TGG | 0.402097 | 2.3:+8445161 | MS.gene028764:CDS |
CAGGAAATTGTTGATGCATA+TGG | 0.404453 | 2.3:+8440427 | MS.gene028764:CDS |
CCCCAAACATCATAGCAAAT+AGG | 0.406183 | 2.3:-8441781 | None:intergenic |
CCTGATTAACAAATGTTCTC+TGG | 0.417140 | 2.3:-8436550 | None:intergenic |
TTACTTATATCTTCAGGAAC+AGG | 0.419503 | 2.3:-8439329 | None:intergenic |
TTTAGGTTCAGTTTCAAATA+CGG | 0.427560 | 2.3:+8444987 | MS.gene028764:CDS |
TGGCATAATCTTCCATCAAA+TGG | 0.429724 | 2.3:+8440348 | MS.gene028764:CDS |
CCTTTCAAACCTAAGAGCCT+TGG | 0.440502 | 2.3:-8438962 | None:intergenic |
ATTATTGTTAAGTGGTGTAC+TGG | 0.441717 | 2.3:+8444171 | MS.gene028764:CDS |
TGGTGAGAATCAGTTGTTCT+GGG | 0.442657 | 2.3:+8444254 | MS.gene028764:CDS |
AATCTCATCATTCGGTTGGT+GGG | 0.442869 | 2.3:+8445861 | MS.gene028764:CDS |
TATATATCATCACATGATAA+AGG | 0.444464 | 2.3:-8444206 | None:intergenic |
CAACTTTGGATGCTGGGATC+AGG | 0.448224 | 2.3:+8439874 | MS.gene028764:CDS |
TTCTCGTACCCTATTGCAAC+CGG | 0.448995 | 2.3:+8437979 | MS.gene028764:CDS |
GTAAGCATGGGCAAATAACT+AGG | 0.449563 | 2.3:+8439348 | MS.gene028764:CDS |
ATTCAAGATTGTATTACAAA+AGG | 0.449790 | 2.3:+8438312 | MS.gene028764:CDS |
GCGTGGAAGTCGTTCAGAAT+TGG | 0.450638 | 2.3:+8443881 | MS.gene028764:CDS |
TGGCTATTATTGCAGTTCCA+TGG | 0.457738 | 2.3:+8444405 | MS.gene028764:CDS |
ATGTTTGGGGACTGGGGTCA+TGG | 0.460087 | 2.3:+8441794 | MS.gene028764:CDS |
TTTGATAGCAATTCTCAAGT+TGG | 0.462373 | 2.3:+8440328 | MS.gene028764:CDS |
TACCGTGATCCATACCCATT+TGG | 0.462921 | 2.3:+8443843 | MS.gene028764:CDS |
AACCAGATGTATTTGATGGT+TGG | 0.463490 | 2.3:-8438909 | None:intergenic |
CATGGAATTTGCCTGTTGCT+GGG | 0.464383 | 2.3:+8441812 | MS.gene028764:CDS |
GATATCCAAACAGACTGTTA+AGG | 0.465549 | 2.3:-8444137 | None:intergenic |
TTTGGTTTCTTCCAGAAGCT+GGG | 0.471800 | 2.3:+8442249 | MS.gene028764:intron |
TACCGACCTAGAGGCAACTT+TGG | 0.480505 | 2.3:+8439860 | MS.gene028764:CDS |
CTGGTTTAAGATTTATCAGT+GGG | 0.482296 | 2.3:+8438926 | MS.gene028764:CDS |
GTCAATGTCCGGTTGCAATA+GGG | 0.482632 | 2.3:-8437987 | None:intergenic |
GGCTTTGGAAAGAGCATCCA+TGG | 0.483435 | 2.3:-8444422 | None:intergenic |
GCACGATGAGCGGATTCGGC+AGG | 0.484020 | 2.3:-8435092 | None:intergenic |
CATTTGGTGTGGATCCTAGC+TGG | 0.485533 | 2.3:+8443859 | MS.gene028764:CDS |
CCAAGGCTCTTAGGTTTGAA+AGG | 0.488630 | 2.3:+8438962 | MS.gene028764:CDS |
CCCCAACCATCAAATACATC+TGG | 0.490317 | 2.3:+8438907 | MS.gene028764:CDS |
CTAGAGGCAACTTTGGATGC+TGG | 0.492388 | 2.3:+8439867 | MS.gene028764:CDS |
ACTCGATGGAGTGAATCATT+TGG | 0.494598 | 2.3:-8444960 | None:intergenic |
TTAAGCCCTACAGACGAACT+TGG | 0.496267 | 2.3:+8444234 | MS.gene028764:CDS |
TTGAACGAAGGTCATCTTCT+CGG | 0.498132 | 2.3:-8435060 | None:intergenic |
TCTCACCAAGTTCGTCTGTA+GGG | 0.500069 | 2.3:-8444239 | None:intergenic |
TTCATTTGCTTCTTTAACAG+AGG | 0.501556 | 2.3:+8446025 | MS.gene028764:CDS |
TCCATGATTTGCTCTCCAGC+TGG | 0.501971 | 2.3:-8439030 | None:intergenic |
ATGAAGATGTCCATTCTGTT+TGG | 0.504716 | 2.3:+8443924 | MS.gene028764:CDS |
AGGTCGAGCCAGATTCTGCC+AGG | 0.506704 | 2.3:+8444896 | MS.gene028764:CDS |
TAGAGGCAACTTTGGATGCT+GGG | 0.508464 | 2.3:+8439868 | MS.gene028764:CDS |
CAATCTCATCATTCGGTTGG+TGG | 0.509295 | 2.3:+8445860 | MS.gene028764:CDS |
CCTATTTGCTATGATGTTTG+GGG | 0.516058 | 2.3:+8441781 | MS.gene028764:CDS |
GATGGACCAAATATGTGAAA+AGG | 0.517624 | 2.3:-8442372 | None:intergenic |
TCGTTTCTTTGGAAGCTCAC+TGG | 0.518522 | 2.3:+8443992 | MS.gene028764:CDS |
GGATCCACACCAAATGGGTA+TGG | 0.518824 | 2.3:-8443852 | None:intergenic |
TGGTCTTAAAATATGTAGGT+GGG | 0.524738 | 2.3:-8440384 | None:intergenic |
CCTGAAGATATAAGTAAGCA+TGG | 0.528764 | 2.3:+8439335 | MS.gene028764:CDS |
CCAGATGTATTTGATGGTTG+GGG | 0.532532 | 2.3:-8438907 | None:intergenic |
GGTATGACAATCTCATCATT+CGG | 0.533809 | 2.3:+8445853 | MS.gene028764:intron |
AATAAATTCTACCACGGCGA+TGG | 0.535129 | 2.3:+8445984 | MS.gene028764:CDS |
AAATCCTCTAAGTCAATGTC+CGG | 0.537437 | 2.3:-8437998 | None:intergenic |
AACCAGACTCATACTTGAAG+TGG | 0.539032 | 2.3:-8444285 | None:intergenic |
TGGTGTGGCACATATGAACT+TGG | 0.539275 | 2.3:+8443944 | MS.gene028764:CDS |
TTCAGGCGAGATAGAACTAC+AGG | 0.539313 | 2.3:+8438699 | MS.gene028764:CDS |
CTTCCATCAAATGGATGCAG+TGG | 0.540871 | 2.3:+8440357 | MS.gene028764:CDS |
TGGATGCTGGGATCAGGCAC+CGG | 0.541463 | 2.3:+8439880 | MS.gene028764:CDS |
TTAACAAATGTTCTCTGGAA+AGG | 0.542253 | 2.3:-8436545 | None:intergenic |
GTGGGTAAATTTCAGGCATG+TGG | 0.542403 | 2.3:+8438646 | MS.gene028764:intron |
TTGGTCTTAAAATATGTAGG+TGG | 0.542745 | 2.3:-8440385 | None:intergenic |
GAAGTCTTCATGATGTTCCC+TGG | 0.543221 | 2.3:-8444914 | None:intergenic |
AGCTAGGATCCACACCAAAT+GGG | 0.544082 | 2.3:-8443857 | None:intergenic |
TCATGCCCTACGGCTTCACT+GGG | 0.546594 | 2.3:+8445950 | MS.gene028764:CDS |
AAAGTGCTGCTTCTTGCTTG+GGG | 0.551124 | 2.3:+8445163 | MS.gene028764:CDS |
TGGGATCAGGCACCGGAACA+AGG | 0.551148 | 2.3:+8439887 | MS.gene028764:CDS |
AGATGCAGGAGGCACTGCAA+CGG | 0.551994 | 2.3:+8440299 | MS.gene028764:intron |
CCACTTAACAATAATGAGAA+GGG | 0.552347 | 2.3:-8444163 | None:intergenic |
TACTTCTGAAATGGATCTTG+AGG | 0.552427 | 2.3:+8444876 | MS.gene028764:CDS |
ACCACTTAACAATAATGAGA+AGG | 0.553277 | 2.3:-8444164 | None:intergenic |
ATCTCATCATTCGGTTGGTG+GGG | 0.553791 | 2.3:+8445862 | MS.gene028764:CDS |
ATGTGCCACACCAAACAGAA+TGG | 0.553900 | 2.3:-8443934 | None:intergenic |
ACCAGCTGGAGAGCAAATCA+TGG | 0.554803 | 2.3:+8439029 | MS.gene028764:CDS |
GCTATGATGTTTGGGGACTG+GGG | 0.555600 | 2.3:+8441788 | MS.gene028764:CDS |
AAGTGCTGCTTCTTGCTTGG+GGG | 0.555916 | 2.3:+8445164 | MS.gene028764:CDS |
TCATGGAGATGCTATTTGGT+GGG | 0.557524 | 2.3:+8442277 | MS.gene028764:CDS |
TTCTCACCAAGTTCGTCTGT+AGG | 0.557602 | 2.3:-8444240 | None:intergenic |
TGGGATAATTTGTAAATCCA+AGG | 0.558545 | 2.3:+8438945 | MS.gene028764:CDS |
AGGAAATTGTTGATGCATAT+GGG | 0.559138 | 2.3:+8440428 | MS.gene028764:CDS |
GTTTCCTATTTAGGTGAACT+CGG | 0.561526 | 2.3:+8435116 | MS.gene028764:CDS |
CAGCATCCAAAGTTGCCTCT+AGG | 0.562003 | 2.3:-8439866 | None:intergenic |
TAATATAAAGGCAGTTGCAA+AGG | 0.563020 | 2.3:-8445898 | None:intergenic |
TTCATGGAGATGCTATTTGG+TGG | 0.565894 | 2.3:+8442276 | MS.gene028764:CDS |
AAACATCATAGCAAATAGGA+AGG | 0.566536 | 2.3:-8441777 | None:intergenic |
GGTCTTAAAATATGTAGGTG+GGG | 0.567854 | 2.3:-8440383 | None:intergenic |
CACCAAATGGGTATGGATCA+CGG | 0.569939 | 2.3:-8443845 | None:intergenic |
TTGCAATAGGGTACGAGAAG+AGG | 0.571818 | 2.3:-8437975 | None:intergenic |
ACATCATAGCAAATAGGAAG+GGG | 0.574170 | 2.3:-8441775 | None:intergenic |
AAGGATCAAGTCAATAAAGC+GGG | 0.575238 | 2.3:+8437944 | MS.gene028764:CDS |
CATCGACAACTTACCGCCGA+TGG | 0.576067 | 2.3:+8435025 | MS.gene028764:CDS |
ATGTTATTTCGTGCTACAAG+AGG | 0.577193 | 2.3:+8438985 | MS.gene028764:CDS |
GAACGACTTCCACGCCAGCT+AGG | 0.589554 | 2.3:-8443873 | None:intergenic |
TGACAATCTCATCATTCGGT+TGG | 0.591546 | 2.3:+8445857 | MS.gene028764:CDS |
ATAGGAAACTGCACGATGAG+CGG | 0.592907 | 2.3:-8435102 | None:intergenic |
ATTCTACCCAGTGAAGCCGT+AGG | 0.593985 | 2.3:-8445956 | None:intergenic |
CACGATGAGCGGATTCGGCA+GGG | 0.593995 | 2.3:-8435091 | None:intergenic |
TTCTACCCAGTGAAGCCGTA+GGG | 0.594481 | 2.3:-8445955 | None:intergenic |
TAAGCATGGGCAAATAACTA+GGG | 0.596072 | 2.3:+8439349 | MS.gene028764:CDS |
AAAGATTCTGAAAATTTGTG+AGG | 0.600422 | 2.3:+8439286 | MS.gene028764:CDS |
TGAACCTAAAACAAACTCGA+TGG | 0.602397 | 2.3:-8444974 | None:intergenic |
GGATCCTGTTACAACCGAGA+TGG | 0.602924 | 2.3:+8439050 | MS.gene028764:CDS |
CTGAAGATATAAGTAAGCAT+GGG | 0.606996 | 2.3:+8439336 | MS.gene028764:CDS |
GTCCTAGGTAAGAAGAGAGA+AGG | 0.607614 | 2.3:+8440099 | MS.gene028764:intron |
GTGTTGGTCTTAAAATATGT+AGG | 0.610059 | 2.3:-8440388 | None:intergenic |
ATGGATCACGGTATTTGACT+AGG | 0.612437 | 2.3:-8443833 | None:intergenic |
ATATGGATTTGTGAAAGTGT+TGG | 0.612589 | 2.3:-8440404 | None:intergenic |
TTTCAAAATAAATTCTACCA+CGG | 0.613439 | 2.3:+8445978 | MS.gene028764:CDS |
TCGGATCGCATCAGATCCAT+CGG | 0.614320 | 2.3:-8435041 | None:intergenic |
GATGTCCATTCTGTTTGGTG+TGG | 0.618192 | 2.3:+8443929 | MS.gene028764:CDS |
CAAGGATCAAGTCAATAAAG+CGG | 0.619147 | 2.3:+8437943 | MS.gene028764:CDS |
ACAACAGTAGTGTAAACTGC+AGG | 0.620146 | 2.3:-8441749 | None:intergenic |
GATGTCGTGATACTTCATGC+AGG | 0.623504 | 2.3:+8442403 | MS.gene028764:CDS |
TGAAAACAAGCTCGGTACAC+AGG | 0.624009 | 2.3:+8441856 | MS.gene028764:CDS |
ATCCAAAGTTGCCTCTAGGT+CGG | 0.626375 | 2.3:-8439862 | None:intergenic |
ACTCCAATAGTGACAAACTT+CGG | 0.626471 | 2.3:+8438266 | MS.gene028764:CDS |
AAGAAAGAAGAAAACCATCT+CGG | 0.629524 | 2.3:-8439064 | None:intergenic |
ATAGCACATGAAAACAAGCT+CGG | 0.634447 | 2.3:+8441848 | MS.gene028764:CDS |
AACATCATAGCAAATAGGAA+GGG | 0.636068 | 2.3:-8441776 | None:intergenic |
AATGTCTCGTTGGAGAGGGA+TGG | 0.636121 | 2.3:+8440167 | MS.gene028764:CDS |
TCTGGTTTAAGATTTATCAG+TGG | 0.637519 | 2.3:+8438925 | MS.gene028764:CDS |
TCACGACATCGAAATGCCGA+TGG | 0.642629 | 2.3:-8442390 | None:intergenic |
AGACCATCTAACAAAATGGA+TGG | 0.645563 | 2.3:+8439926 | MS.gene028764:CDS |
TCTAACAAAATGGATGGACC+TGG | 0.646559 | 2.3:+8439932 | MS.gene028764:CDS |
GGTGAGAATCAGTTGTTCTG+GGG | 0.647031 | 2.3:+8444255 | MS.gene028764:CDS |
GGTGTGGCACATATGAACTT+GGG | 0.650339 | 2.3:+8443945 | MS.gene028764:CDS |
GCATGGGCAAATAACTAGGG+AGG | 0.654458 | 2.3:+8439352 | MS.gene028764:CDS |
TGATCCATACCCATTTGGTG+TGG | 0.654892 | 2.3:+8443848 | MS.gene028764:CDS |
TGGGCAGGTAAAGCGATGTG+CGG | 0.665285 | 2.3:+8437895 | MS.gene028764:intron |
GTCACGTCTTACCGACCTAG+AGG | 0.669518 | 2.3:+8439851 | MS.gene028764:CDS |
CTGTTAAGGAAGATCATCTG+TGG | 0.677447 | 2.3:-8444123 | None:intergenic |
ACTAAAGAAGCTTCATACTG+AGG | 0.681287 | 2.3:+8444451 | MS.gene028764:CDS |
GGTCGAGCCAGATTCTGCCA+GGG | 0.693282 | 2.3:+8444897 | MS.gene028764:CDS |
AGGGATGATGAGTTGAACGA+AGG | 0.696018 | 2.3:-8435072 | None:intergenic |
GGTGTGGATCCTAGCTGGCG+TGG | 0.704142 | 2.3:+8443864 | MS.gene028764:CDS |
CTATCTCGCCTGAAACAGCA+CGG | 0.731490 | 2.3:-8438690 | None:intergenic |
TGAACTTATAGCCATCGCCG+TGG | 0.743258 | 2.3:-8445995 | None:intergenic |
GATCGCATCAGATCCATCGG+CGG | 0.761413 | 2.3:-8435038 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 8435014 | 8446058 | 8435014 | ID=MS.gene028764 |
chr2.3 | mRNA | 8435014 | 8446058 | 8435014 | ID=MS.gene028764.t1;Parent=MS.gene028764 |
chr2.3 | exon | 8435014 | 8435157 | 8435014 | ID=MS.gene028764.t1.exon1;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8435014 | 8435157 | 8435014 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8436527 | 8436571 | 8436527 | ID=MS.gene028764.t1.exon2;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8436527 | 8436571 | 8436527 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8437902 | 8438024 | 8437902 | ID=MS.gene028764.t1.exon3;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8437902 | 8438024 | 8437902 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8438226 | 8438333 | 8438226 | ID=MS.gene028764.t1.exon4;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8438226 | 8438333 | 8438226 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8438661 | 8438774 | 8438661 | ID=MS.gene028764.t1.exon5;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8438661 | 8438774 | 8438661 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8438898 | 8439071 | 8438898 | ID=MS.gene028764.t1.exon6;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8438898 | 8439071 | 8438898 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8439236 | 8439373 | 8439236 | ID=MS.gene028764.t1.exon7;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8439236 | 8439373 | 8439236 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8439846 | 8439953 | 8439846 | ID=MS.gene028764.t1.exon8;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8439846 | 8439953 | 8439846 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8440106 | 8440213 | 8440106 | ID=MS.gene028764.t1.exon9;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8440106 | 8440213 | 8440106 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8440301 | 8440449 | 8440301 | ID=MS.gene028764.t1.exon10;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8440301 | 8440449 | 8440301 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8441724 | 8441877 | 8441724 | ID=MS.gene028764.t1.exon11;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8441724 | 8441877 | 8441724 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8442264 | 8442424 | 8442264 | ID=MS.gene028764.t1.exon12;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8442264 | 8442424 | 8442264 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8443815 | 8444021 | 8443815 | ID=MS.gene028764.t1.exon13;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8443815 | 8444021 | 8443815 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8444110 | 8444293 | 8444110 | ID=MS.gene028764.t1.exon14;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8444110 | 8444293 | 8444110 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8444389 | 8444472 | 8444389 | ID=MS.gene028764.t1.exon15;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8444389 | 8444472 | 8444389 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8444844 | 8445037 | 8444844 | ID=MS.gene028764.t1.exon16;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8444844 | 8445037 | 8444844 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8445126 | 8445185 | 8445126 | ID=MS.gene028764.t1.exon17;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8445126 | 8445185 | 8445126 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
chr2.3 | exon | 8445854 | 8446058 | 8445854 | ID=MS.gene028764.t1.exon18;Parent=MS.gene028764.t1 |
chr2.3 | CDS | 8445854 | 8446058 | 8445854 | ID=cds.MS.gene028764.t1;Parent=MS.gene028764.t1 |
Gene Sequence |
Protein sequence |