Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029056.t1 | XP_003592812.2 | 95.8 | 827 | 20 | 3 | 1 | 822 | 1 | 817 | 0.00E+00 | 1456.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029056.t1 | C8VDQ4 | 32.2 | 317 | 168 | 5 | 246 | 542 | 287 | 576 | 2.6e-35 | 152.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029056.t1 | G7IAX7 | 95.8 | 827 | 20 | 3 | 1 | 822 | 1 | 817 | 0.0e+00 | 1456.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene029056 | MS.gene073802 | PPI |
MS.gene30888 | MS.gene029056 | PPI |
MS.gene029887 | MS.gene029056 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029056.t1 | MTR_1g116310 | 95.889 | 827 | 19 | 3 | 1 | 822 | 1 | 817 | 0.0 | 1609 |
MS.gene029056.t1 | MTR_1g067150 | 58.971 | 719 | 227 | 15 | 102 | 804 | 483 | 1149 | 0.0 | 775 |
MS.gene029056.t1 | MTR_1g067150 | 60.000 | 50 | 17 | 1 | 21 | 67 | 325 | 374 | 9.45e-12 | 69.7 |
MS.gene029056.t1 | MTR_5g098140 | 33.654 | 312 | 175 | 7 | 243 | 548 | 106 | 391 | 7.39e-49 | 178 |
MS.gene029056.t1 | MTR_6g016590 | 31.489 | 235 | 127 | 5 | 247 | 474 | 84 | 291 | 2.39e-27 | 115 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029056.t1 | AT3G55020 | 65.144 | 832 | 239 | 13 | 8 | 817 | 15 | 817 | 0.0 | 1012 |
MS.gene029056.t1 | AT3G55020 | 68.296 | 757 | 207 | 11 | 8 | 750 | 15 | 752 | 0.0 | 977 |
MS.gene029056.t1 | AT3G55020 | 67.087 | 714 | 202 | 11 | 8 | 707 | 15 | 709 | 0.0 | 903 |
MS.gene029056.t1 | AT2G39280 | 64.143 | 753 | 238 | 11 | 18 | 756 | 10 | 744 | 0.0 | 895 |
MS.gene029056.t1 | AT2G39280 | 63.600 | 750 | 236 | 12 | 21 | 756 | 41 | 767 | 0.0 | 875 |
MS.gene029056.t1 | AT2G37290 | 59.329 | 686 | 212 | 13 | 122 | 793 | 209 | 841 | 0.0 | 764 |
MS.gene029056.t1 | AT2G37290 | 46.512 | 86 | 44 | 2 | 14 | 99 | 9 | 92 | 2.21e-14 | 77.8 |
MS.gene029056.t1 | AT2G37290 | 59.184 | 686 | 213 | 13 | 122 | 793 | 209 | 841 | 0.0 | 764 |
MS.gene029056.t1 | AT2G37290 | 49.367 | 79 | 38 | 2 | 21 | 99 | 16 | 92 | 2.23e-14 | 77.8 |
MS.gene029056.t1 | AT2G37290 | 56.389 | 720 | 213 | 14 | 122 | 793 | 209 | 875 | 0.0 | 747 |
MS.gene029056.t1 | AT2G37290 | 49.367 | 79 | 38 | 2 | 21 | 99 | 16 | 92 | 2.12e-14 | 78.2 |
MS.gene029056.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 219 | 550 | 100 | 396 | 1.54e-51 | 186 |
MS.gene029056.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 219 | 550 | 100 | 396 | 1.54e-51 | 186 |
MS.gene029056.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 219 | 550 | 100 | 396 | 1.54e-51 | 186 |
MS.gene029056.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 219 | 550 | 100 | 396 | 1.54e-51 | 186 |
MS.gene029056.t1 | AT3G07890 | 34.706 | 340 | 171 | 10 | 219 | 550 | 100 | 396 | 1.54e-51 | 186 |
MS.gene029056.t1 | AT5G15930 | 32.340 | 235 | 125 | 5 | 247 | 474 | 82 | 289 | 7.41e-29 | 119 |
MS.gene029056.t1 | AT3G02460 | 30.453 | 243 | 135 | 5 | 247 | 482 | 85 | 300 | 1.61e-25 | 108 |
MS.gene029056.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 247 | 474 | 85 | 292 | 1.76e-25 | 109 |
MS.gene029056.t1 | AT3G02460 | 30.638 | 235 | 129 | 5 | 247 | 474 | 85 | 292 | 6.32e-25 | 107 |
MS.gene029056.t1 | AT3G02460 | 30.909 | 220 | 119 | 4 | 247 | 459 | 85 | 278 | 4.65e-23 | 100 |
MS.gene029056.t1 | AT3G02460 | 30.909 | 220 | 119 | 4 | 247 | 459 | 85 | 278 | 7.04e-23 | 101 |
Find 199 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCGAACTTCATTTATATTT+TGG | 0.118339 | 1.1:+81865226 | None:intergenic |
ATCGGTATACAAACCCAATT+TGG | 0.132514 | 1.1:+81865850 | None:intergenic |
TAGAACTGCAGTTGCTTTAA+TGG | 0.133261 | 1.1:-81865468 | MS.gene029056:CDS |
TTTCCCTCATGTTGACTTAC+AGG | 0.231638 | 1.1:+81860369 | None:intergenic |
AGCCAATCATCTAGATTATC+TGG | 0.233143 | 1.1:-81865734 | MS.gene029056:CDS |
CTGGCCTCCAATGGTGATTC+TGG | 0.238333 | 1.1:-81866791 | MS.gene029056:CDS |
GCGGGAGAGGTTTCCCAAAT+TGG | 0.277262 | 1.1:-81865864 | MS.gene029056:CDS |
TTTCTAGATCCGGGAGATTC+TGG | 0.277675 | 1.1:+81860617 | None:intergenic |
ATCTTATGGTTGACCATAAC+TGG | 0.286814 | 1.1:+81867333 | None:intergenic |
GGGGAAGAGAACAAAGTTTC+TGG | 0.290787 | 1.1:-81867497 | MS.gene029056:CDS |
GGAGCTTGAAACAGCATTAA+TGG | 0.291836 | 1.1:-81862777 | MS.gene029056:CDS |
ATTCGTGTTAAGAAGAAAAC+TGG | 0.300454 | 1.1:-81867278 | MS.gene029056:CDS |
GATCTGCCGCGGACATTTCC+TGG | 0.303734 | 1.1:-81866554 | MS.gene029056:CDS |
CTAGATACTCCTCTTGTTGA+TGG | 0.308816 | 1.1:-81867095 | MS.gene029056:CDS |
CTCTTGATTGTTTCTAGATC+CGG | 0.309833 | 1.1:+81860607 | None:intergenic |
AATTTATCCCGTACAGAATC+TGG | 0.323143 | 1.1:-81865063 | MS.gene029056:CDS |
ATATGCTTCCCAAGTGCTTC+AGG | 0.328257 | 1.1:-81861733 | MS.gene029056:intron |
ACAGGAAACTGCAATGCTTC+AGG | 0.337217 | 1.1:-81861918 | MS.gene029056:intron |
CTTTCTCGACCATTTGGACT+TGG | 0.337275 | 1.1:-81860548 | MS.gene029056:CDS |
CGGGAGAGGTTTCCCAAATT+GGG | 0.339474 | 1.1:-81865863 | MS.gene029056:intron |
CTCGACCATTTGGACTTGGA+TGG | 0.351641 | 1.1:-81860544 | MS.gene029056:CDS |
GCTGGTTCTTCCACATTAGT+AGG | 0.355189 | 1.1:+81860405 | None:intergenic |
TCCTTTGTTGTTACCAAGGC+TGG | 0.355345 | 1.1:+81865336 | None:intergenic |
GTGCAGGTTGCATGGGTGAC+TGG | 0.357360 | 1.1:-81865709 | MS.gene029056:CDS |
ATTTCCTGGTCACCCTGCTT+TGG | 0.358219 | 1.1:-81866540 | MS.gene029056:CDS |
TCGAATAATGCGCAAGTGCT+TGG | 0.359101 | 1.1:-81865087 | MS.gene029056:CDS |
GCTGATACTCCACCTGAAAA+TGG | 0.359223 | 1.1:-81867407 | MS.gene029056:CDS |
AGTATTAAGAGATGATCTTA+TGG | 0.361165 | 1.1:+81867319 | None:intergenic |
TATAAATGAAGTTCGATTGC+AGG | 0.367487 | 1.1:-81865220 | MS.gene029056:CDS |
TTGTGATCGAATGTAATTAC+AGG | 0.371474 | 1.1:+81868242 | None:intergenic |
CACTAGAGGCTTCGTGTCCT+TGG | 0.372322 | 1.1:-81867031 | MS.gene029056:CDS |
GTTGCTTTAATGGAGCTATA+TGG | 0.372455 | 1.1:-81865458 | MS.gene029056:intron |
AACTGTTGCACTTGCAGAAA+TGG | 0.384197 | 1.1:-81861066 | MS.gene029056:CDS |
AGTTTGCTTTCTCGACCATT+TGG | 0.398525 | 1.1:-81860554 | MS.gene029056:CDS |
AGCTCAGAGAAGGGTGTTGA+TGG | 0.400403 | 1.1:-81867443 | MS.gene029056:CDS |
CGAATAATGCGCAAGTGCTT+GGG | 0.402971 | 1.1:-81865086 | MS.gene029056:CDS |
GAGATGGTTGCAGTTTAGTT+TGG | 0.408611 | 1.1:+81860985 | None:intergenic |
CAAAAGGGCTTAAAGCTTTG+AGG | 0.410424 | 1.1:-81865146 | MS.gene029056:CDS |
CGTACTCACGGTATCTTTGC+AGG | 0.412476 | 1.1:+81867826 | None:intergenic |
ACCTCTCCCCTCAGTGCCAT+TGG | 0.417402 | 1.1:+81866972 | None:intergenic |
TTAACCTGCTCTGGAAGATC+TGG | 0.418284 | 1.1:+81864979 | None:intergenic |
TAGTCAAAAGGAGGAGTTAC+CGG | 0.426816 | 1.1:-81867384 | MS.gene029056:CDS |
AATGGAGAAGAGAGCAGTTA+TGG | 0.428862 | 1.1:-81861048 | MS.gene029056:CDS |
GCAATTGAAGAAAGATCAAA+AGG | 0.430398 | 1.1:-81865162 | MS.gene029056:CDS |
TTGAAGAGTTGGTGCGGGAG+AGG | 0.436427 | 1.1:-81865877 | MS.gene029056:CDS |
ATTAAAAGTAATCATCAAAA+CGG | 0.438574 | 1.1:-81866767 | MS.gene029056:CDS |
TCGACCATTTGGACTTGGAT+GGG | 0.439304 | 1.1:-81860543 | MS.gene029056:CDS |
AAGACGGAATTAACCTGCTC+TGG | 0.441432 | 1.1:+81864970 | None:intergenic |
CGACCATTTGGACTTGGATG+GGG | 0.448956 | 1.1:-81860542 | MS.gene029056:CDS |
ATCATCAAAAGGAGCATTTG+AGG | 0.454003 | 1.1:-81867165 | MS.gene029056:CDS |
TCGGTATACAAACCCAATTT+GGG | 0.454846 | 1.1:+81865851 | None:intergenic |
GCGGGTAGAGAAGTATTATC+AGG | 0.455990 | 1.1:-81866819 | MS.gene029056:CDS |
ACTTTCTGATAAACAAGAAC+AGG | 0.458805 | 1.1:-81861936 | MS.gene029056:CDS |
TGCTGCTGCTGCACCACTAG+AGG | 0.462754 | 1.1:-81867045 | MS.gene029056:CDS |
ATCTGGGAGTGCAGGTTGCA+TGG | 0.464025 | 1.1:-81865717 | MS.gene029056:CDS |
AGAGGATATGATAGAGTCTC+AGG | 0.467308 | 1.1:-81866019 | MS.gene029056:intron |
GAGTTGGAAGTTCTTGTTCG+TGG | 0.469569 | 1.1:-81867002 | MS.gene029056:CDS |
TCAATTGCAGCTATTACAGC+TGG | 0.470313 | 1.1:+81865177 | None:intergenic |
CTACCATCCTCGTCCAAAGC+AGG | 0.473442 | 1.1:+81866527 | None:intergenic |
TCCCTCTGTTGGTTACTGTC+AGG | 0.474299 | 1.1:-81866462 | MS.gene029056:intron |
GAAGTATTATCAGGATCTAC+TGG | 0.474674 | 1.1:-81866810 | MS.gene029056:CDS |
AGCTCCAGATCTTCCAGAGC+AGG | 0.477837 | 1.1:-81864983 | MS.gene029056:intron |
TCCCAGATAATCTAGATGAT+TGG | 0.479830 | 1.1:+81865732 | None:intergenic |
AAAAGGGCTTAAAGCTTTGA+GGG | 0.481358 | 1.1:-81865145 | MS.gene029056:CDS |
TTAAAAGTAATCATCAAAAC+GGG | 0.485896 | 1.1:-81866766 | MS.gene029056:CDS |
TCTTGATTGTTTCTAGATCC+GGG | 0.486136 | 1.1:+81860608 | None:intergenic |
TGCCTGAGGAAAATGCCTTT+TGG | 0.488127 | 1.1:-81866293 | MS.gene029056:intron |
GTAAGTCAACATGAGGGAAA+TGG | 0.490157 | 1.1:-81860366 | MS.gene029056:CDS |
TGGTCACCCTGCTTTGGACG+AGG | 0.490278 | 1.1:-81866534 | MS.gene029056:CDS |
TACTTCAGTGCTTCGAGTGT+GGG | 0.492239 | 1.1:-81865528 | MS.gene029056:intron |
TTCCCTCATGTTGACTTACA+GGG | 0.493592 | 1.1:+81860370 | None:intergenic |
ACCTGAAAATGGTAGTCAAA+AGG | 0.493903 | 1.1:-81867396 | MS.gene029056:CDS |
AATTCCAGAATCACCATTGG+AGG | 0.496500 | 1.1:+81866787 | None:intergenic |
AGTTGGAAGTTCTTGTTCGT+GGG | 0.497626 | 1.1:-81867001 | MS.gene029056:CDS |
ACAGGGCTTTCTACTACAGC+TGG | 0.498797 | 1.1:+81860387 | None:intergenic |
CGAGACAGAGTCTTCTGTAT+TGG | 0.501438 | 1.1:-81867540 | MS.gene029056:CDS |
TTTGAGGGATGCTAAGGGTC+TGG | 0.503136 | 1.1:-81865130 | MS.gene029056:CDS |
CCCTTCTCTGAGCTAGCATC+AGG | 0.503203 | 1.1:+81867452 | None:intergenic |
AGAAAAGATCAGCTATTCTC+AGG | 0.504550 | 1.1:-81863594 | MS.gene029056:intron |
CGGTATCTTTGCAGGTGTTG+AGG | 0.504674 | 1.1:+81867834 | None:intergenic |
AGCATCCTTTGTTGTTACCA+AGG | 0.504710 | 1.1:+81865332 | None:intergenic |
GGGAGTTCCAATGGCACTGA+GGG | 0.506042 | 1.1:-81866979 | MS.gene029056:CDS |
GGCTTGAGTACCTCAACAAA+TGG | 0.507338 | 1.1:-81867074 | MS.gene029056:CDS |
GCGGGTAGAGCAAGAACAAA+AGG | 0.510673 | 1.1:-81861805 | MS.gene029056:CDS |
TAAAGCTTTGAGGGATGCTA+AGG | 0.510952 | 1.1:-81865136 | MS.gene029056:CDS |
TTTAATTCCAGAATCACCAT+TGG | 0.511424 | 1.1:+81866784 | None:intergenic |
GATGGTGCAAAATCATCAAA+AGG | 0.513893 | 1.1:-81867176 | MS.gene029056:CDS |
ACTTTACTTCAGTCATTAGC+CGG | 0.514238 | 1.1:-81865297 | MS.gene029056:CDS |
AGATGGTTAAGCAGGACAAC+AGG | 0.514494 | 1.1:-81862754 | MS.gene029056:CDS |
CTCACTTTATGCAGATTGCA+TGG | 0.515543 | 1.1:-81863648 | MS.gene029056:intron |
AAAAGGTAACCTGAAGCACT+TGG | 0.516055 | 1.1:+81861724 | None:intergenic |
CGTTAAAGTACAAGATGAGT+TGG | 0.517468 | 1.1:-81860343 | MS.gene029056:CDS |
ACTTCCAACTCTTCTTTCCA+AGG | 0.520731 | 1.1:+81867014 | None:intergenic |
ATCATCTCTTAATACTATTG+AGG | 0.521914 | 1.1:-81867312 | MS.gene029056:CDS |
TCGTCCAAAGCAGGGTGACC+AGG | 0.522777 | 1.1:+81866536 | None:intergenic |
ATTAATGGAGATGGTTAAGC+AGG | 0.523073 | 1.1:-81862762 | MS.gene029056:CDS |
GCAAACTTATCCTCCTGGTA+GGG | 0.524898 | 1.1:+81860570 | None:intergenic |
GAATTCATAGAGTCCAGTTA+TGG | 0.526092 | 1.1:-81867346 | MS.gene029056:CDS |
TTGATTAGTCTTACTGGAGA+GGG | 0.527695 | 1.1:-81865018 | MS.gene029056:CDS |
CTGGTAGGGGTATCCGTCGT+AGG | 0.530642 | 1.1:+81860584 | None:intergenic |
ATCATCTAAAATGCCCATCA+AGG | 0.531529 | 1.1:+81866062 | None:intergenic |
GCTACTTTGCAGTATCAGTC+TGG | 0.532281 | 1.1:-81861008 | MS.gene029056:CDS |
TTGTAGAACCAGATTCTGTA+CGG | 0.533433 | 1.1:+81865055 | None:intergenic |
GTACTTCAGTGCTTCGAGTG+TGG | 0.533468 | 1.1:-81865529 | MS.gene029056:intron |
ATTCTAGTCTCCTCGGATGC+CGG | 0.534883 | 1.1:+81867365 | None:intergenic |
GGGCAGTTAGATGACAATGA+TGG | 0.535831 | 1.1:-81866746 | MS.gene029056:CDS |
ACTGCTATCAAATGTGGAGC+CGG | 0.536559 | 1.1:+81865278 | None:intergenic |
TGAAACAGCATTAATGGAGA+TGG | 0.538013 | 1.1:-81862771 | MS.gene029056:CDS |
TCACCCCATCCAAGTCCAAA+TGG | 0.538801 | 1.1:+81860539 | None:intergenic |
CTTAAAACATACCGTGGAGA+TGG | 0.540060 | 1.1:+81860969 | None:intergenic |
TTGGTAACAACAAAGGATGC+TGG | 0.541111 | 1.1:-81865330 | MS.gene029056:CDS |
TCTAGATTATCTGGGAGTGC+AGG | 0.544285 | 1.1:-81865725 | MS.gene029056:CDS |
AGAAAGCAAACTTATCCTCC+TGG | 0.545441 | 1.1:+81860565 | None:intergenic |
ACCTGATGCTAGCTCAGAGA+AGG | 0.548837 | 1.1:-81867453 | MS.gene029056:CDS |
GTGTCCTTGGAAAGAAGAGT+TGG | 0.552169 | 1.1:-81867018 | MS.gene029056:CDS |
TGTGTCAACAGGGATGCCTA+TGG | 0.558632 | 1.1:-81867870 | MS.gene029056:intron |
ACAAGAGGAGTATCTAGACT+AGG | 0.560908 | 1.1:+81867101 | None:intergenic |
AGTTATGGCTGAGTCTATGC+TGG | 0.562409 | 1.1:-81861033 | MS.gene029056:CDS |
AGGTGTGGTAAAAGATGAGC+TGG | 0.563044 | 1.1:-81867228 | MS.gene029056:CDS |
TCTTCACAGCCAGAATCTCC+CGG | 0.563964 | 1.1:-81860626 | MS.gene029056:CDS |
GGCAGTTAGATGACAATGAT+GGG | 0.564494 | 1.1:-81866745 | MS.gene029056:CDS |
AAAGATGAAAGAAATAAGAA+AGG | 0.564961 | 1.1:-81867248 | MS.gene029056:CDS |
CAGTTCTAAATAGCATGACT+CGG | 0.565813 | 1.1:+81865483 | None:intergenic |
CACCCTGCTTTGGACGAGGA+TGG | 0.566489 | 1.1:-81866530 | MS.gene029056:CDS |
TGTGGGTGTCAAAGCAAGGC+GGG | 0.567027 | 1.1:-81866837 | MS.gene029056:CDS |
AACATGCTTCCTTGGGAAAG+TGG | 0.568071 | 1.1:-81865661 | MS.gene029056:intron |
AAGAGGAAAGGTCCGAGCGG+TGG | 0.571481 | 1.1:-81867586 | MS.gene029056:CDS |
TCTATGAATTCTAGTCTCCT+CGG | 0.571616 | 1.1:+81867358 | None:intergenic |
TCCAATGGCACTGAGGGGAG+AGG | 0.572143 | 1.1:-81866973 | MS.gene029056:intron |
TGTAGAACCAGATTCTGTAC+GGG | 0.579242 | 1.1:+81865056 | None:intergenic |
GCCAATCATCTAGATTATCT+GGG | 0.580459 | 1.1:-81865733 | MS.gene029056:CDS |
CAGGATCTACTGGCCTCCAA+TGG | 0.580957 | 1.1:-81866800 | MS.gene029056:CDS |
GCTCGACATAATCCCTCTGT+TGG | 0.584398 | 1.1:-81866473 | MS.gene029056:CDS |
TTTGATTAGTCTTACTGGAG+AGG | 0.585523 | 1.1:-81865019 | MS.gene029056:CDS |
CAAACTTATCCTCCTGGTAG+GGG | 0.586096 | 1.1:+81860571 | None:intergenic |
GGAGGAGTTACCGGCATCCG+AGG | 0.588034 | 1.1:-81867375 | MS.gene029056:CDS |
TGGATGGGGTGATCGAAACA+AGG | 0.588081 | 1.1:-81860528 | MS.gene029056:intron |
CTACGACGGATACCCCTACC+AGG | 0.588101 | 1.1:-81860583 | MS.gene029056:CDS |
TTCAGGAGGAAGAAGAGGAA+AGG | 0.588650 | 1.1:-81867598 | MS.gene029056:intron |
TACCATCCTCGTCCAAAGCA+GGG | 0.589974 | 1.1:+81866528 | None:intergenic |
TCTGGGAGTGCAGGTTGCAT+GGG | 0.591256 | 1.1:-81865716 | MS.gene029056:CDS |
GCTCAGAGAAGGGTGTTGAT+GGG | 0.591623 | 1.1:-81867442 | MS.gene029056:CDS |
AGCAGCAATACCATTTGTTG+AGG | 0.591699 | 1.1:+81867064 | None:intergenic |
CAAGAGGAGTATCTAGACTA+GGG | 0.592003 | 1.1:+81867102 | None:intergenic |
AAAAGGTTACAGAGGATGCT+CGG | 0.593286 | 1.1:-81861788 | MS.gene029056:CDS |
CAATACAGAAGACTCTGTCT+CGG | 0.596388 | 1.1:+81867541 | None:intergenic |
GACACAAACAGAACACCTGT+GGG | 0.596559 | 1.1:-81867518 | MS.gene029056:CDS |
GTTTCTGGTGCTGAATCTGT+AGG | 0.597964 | 1.1:-81867482 | MS.gene029056:CDS |
ATGTCTTGTAGGTCCAGCCT+TGG | 0.598613 | 1.1:-81865349 | MS.gene029056:intron |
ATAGGGGAAACCTACTAATG+TGG | 0.602696 | 1.1:-81860415 | MS.gene029056:intron |
GGTTAAGCAGGACAACAGGC+GGG | 0.603079 | 1.1:-81862750 | MS.gene029056:CDS |
ATTTCTGATAGGTCTTGATG+CGG | 0.605171 | 1.1:-81861824 | MS.gene029056:intron |
GCAAGAACAAAAGGTTACAG+AGG | 0.606679 | 1.1:-81861796 | MS.gene029056:CDS |
CACAAACAGAACACCTGTGG+GGG | 0.609799 | 1.1:-81867516 | MS.gene029056:CDS |
GGTAGAGCGACTAGAAGAAG+AGG | 0.611682 | 1.1:-81861978 | MS.gene029056:CDS |
AAGCTGACTGCTATCAAATG+TGG | 0.615286 | 1.1:+81865272 | None:intergenic |
TGTAAATGCTAGCGTACTCA+CGG | 0.616978 | 1.1:+81867814 | None:intergenic |
AAAGGTAACCTGAAGCACTT+GGG | 0.617219 | 1.1:+81861725 | None:intergenic |
TGGTTAAGCAGGACAACAGG+CGG | 0.617927 | 1.1:-81862751 | MS.gene029056:CDS |
AAGCCCTGTAAGTCAACATG+AGG | 0.619652 | 1.1:-81860373 | MS.gene029056:CDS |
AGGTCGCACAGTAAATCCAT+AGG | 0.619964 | 1.1:+81867854 | None:intergenic |
AGGAGCTGAGGAATAAACAT+AGG | 0.621180 | 1.1:-81865200 | MS.gene029056:CDS |
CAAGGACACGAAGCCTCTAG+TGG | 0.621659 | 1.1:+81867032 | None:intergenic |
AGCAAACTTATCCTCCTGGT+AGG | 0.622299 | 1.1:+81860569 | None:intergenic |
TAATTACATTCGATCACAAG+AGG | 0.624018 | 1.1:-81868238 | MS.gene029056:intron |
TTGGAAGTTCTTGTTCGTGG+GGG | 0.625449 | 1.1:-81866999 | MS.gene029056:CDS |
TTGCATGGGTGACTGGACCA+TGG | 0.630069 | 1.1:-81865702 | MS.gene029056:CDS |
TGAGTACGCTAGCATTTACA+AGG | 0.633990 | 1.1:-81867811 | MS.gene029056:intron |
GTTGGAAGTTCTTGTTCGTG+GGG | 0.634337 | 1.1:-81867000 | MS.gene029056:CDS |
GAGTCACTATCTCTTGCTGA+TGG | 0.635928 | 1.1:-81867194 | MS.gene029056:CDS |
TGAAAGAAATAAGAAAGGTG+TGG | 0.636747 | 1.1:-81867243 | MS.gene029056:CDS |
AAGTTCGATTGCAGGAGCTG+AGG | 0.637148 | 1.1:-81865212 | MS.gene029056:CDS |
TCCAGCCTTGGTAACAACAA+AGG | 0.637738 | 1.1:-81865337 | MS.gene029056:CDS |
GGGGAGTTCCAATGGCACTG+AGG | 0.638061 | 1.1:-81866980 | MS.gene029056:CDS |
AGGAGTTCTATGATGTTGAG+AGG | 0.638153 | 1.1:-81867130 | MS.gene029056:CDS |
ATGGAAAGGACAGATTGAGA+AGG | 0.639006 | 1.1:-81866687 | MS.gene029056:intron |
TTTCTGATAGGTCTTGATGC+GGG | 0.639713 | 1.1:-81861823 | MS.gene029056:intron |
GGACACAAACAGAACACCTG+TGG | 0.641708 | 1.1:-81867519 | MS.gene029056:CDS |
AAAGCTTTGAGGGATGCTAA+GGG | 0.642149 | 1.1:-81865135 | MS.gene029056:CDS |
ACCTGACAGTAACCAACAGA+GGG | 0.642883 | 1.1:+81866461 | None:intergenic |
CAATTGAAGAAAGATCAAAA+GGG | 0.650314 | 1.1:-81865161 | MS.gene029056:CDS |
TGAAAATGGTAGTCAAAAGG+AGG | 0.652128 | 1.1:-81867393 | MS.gene029056:CDS |
GTACTCAAGCCATCAACAAG+AGG | 0.653340 | 1.1:+81867086 | None:intergenic |
CTAAACTGCAACCATCTCCA+CGG | 0.655642 | 1.1:-81860980 | MS.gene029056:intron |
CAGGCGGGAACTGAGCGCCA+AGG | 0.658763 | 1.1:-81862735 | MS.gene029056:intron |
CCTGATGCTAGCTCAGAGAA+GGG | 0.661370 | 1.1:-81867452 | MS.gene029056:CDS |
GGGTGACCAGGAAATGTCCG+CGG | 0.668654 | 1.1:+81866548 | None:intergenic |
AAAACCTGACCACTTTCCCA+AGG | 0.674975 | 1.1:+81865652 | None:intergenic |
TTCGTGTTAAGAAGAAAACT+GGG | 0.676917 | 1.1:-81867277 | MS.gene029056:CDS |
GACCTGACAGTAACCAACAG+AGG | 0.681330 | 1.1:+81866460 | None:intergenic |
ATTTGAGGAAGATTCTGACG+AGG | 0.681572 | 1.1:-81867150 | MS.gene029056:CDS |
TTGTGGGTGTCAAAGCAAGG+CGG | 0.684016 | 1.1:-81866838 | MS.gene029056:CDS |
GGAGTTCCAATGGCACTGAG+GGG | 0.686267 | 1.1:-81866978 | MS.gene029056:CDS |
AGCCCTGTAAGTCAACATGA+GGG | 0.698307 | 1.1:-81860372 | MS.gene029056:CDS |
AAACAATCAAGAGCCTACGA+CGG | 0.712030 | 1.1:-81860597 | MS.gene029056:CDS |
TGTTTGTGCAGGATCTGCCG+CGG | 0.713471 | 1.1:-81866565 | MS.gene029056:intron |
AAGAAGAGGAAAGGTCCGAG+CGG | 0.722767 | 1.1:-81867589 | MS.gene029056:CDS |
ACACAAACAGAACACCTGTG+GGG | 0.727670 | 1.1:-81867517 | MS.gene029056:CDS |
CGACGGATACCCCTACCAGG+AGG | 0.749834 | 1.1:-81860580 | MS.gene029056:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 81860332 | 81868300 | 81860332 | ID=MS.gene029056 |
chr1.1 | mRNA | 81860332 | 81868300 | 81860332 | ID=MS.gene029056.t1;Parent=MS.gene029056 |
chr1.1 | exon | 81868239 | 81868300 | 81868239 | ID=MS.gene029056.t1.exon1;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81868239 | 81868300 | 81868239 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81867812 | 81867881 | 81867812 | ID=MS.gene029056.t1.exon2;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81867812 | 81867881 | 81867812 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81866974 | 81867615 | 81866974 | ID=MS.gene029056.t1.exon3;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81866974 | 81867615 | 81866974 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81866688 | 81866873 | 81866688 | ID=MS.gene029056.t1.exon4;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81866688 | 81866873 | 81866688 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81866463 | 81866576 | 81866463 | ID=MS.gene029056.t1.exon5;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81866463 | 81866576 | 81866463 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81866294 | 81866352 | 81866294 | ID=MS.gene029056.t1.exon6;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81866294 | 81866352 | 81866294 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81866020 | 81866086 | 81866020 | ID=MS.gene029056.t1.exon7;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81866020 | 81866086 | 81866020 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81865864 | 81865915 | 81865864 | ID=MS.gene029056.t1.exon8;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81865864 | 81865915 | 81865864 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81865662 | 81865754 | 81865662 | ID=MS.gene029056.t1.exon9;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81865662 | 81865754 | 81865662 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81865459 | 81865542 | 81865459 | ID=MS.gene029056.t1.exon10;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81865459 | 81865542 | 81865459 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81864984 | 81865360 | 81864984 | ID=MS.gene029056.t1.exon11;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81864984 | 81865360 | 81864984 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81863595 | 81863656 | 81863595 | ID=MS.gene029056.t1.exon12;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81863595 | 81863656 | 81863595 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81862736 | 81862805 | 81862736 | ID=MS.gene029056.t1.exon13;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81862736 | 81862805 | 81862736 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81861919 | 81861999 | 81861919 | ID=MS.gene029056.t1.exon14;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81861919 | 81861999 | 81861919 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81861734 | 81861835 | 81861734 | ID=MS.gene029056.t1.exon15;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81861734 | 81861835 | 81861734 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81860981 | 81861105 | 81860981 | ID=MS.gene029056.t1.exon16;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81860981 | 81861105 | 81860981 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81860529 | 81860649 | 81860529 | ID=MS.gene029056.t1.exon17;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81860529 | 81860649 | 81860529 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
chr1.1 | exon | 81860332 | 81860433 | 81860332 | ID=MS.gene029056.t1.exon18;Parent=MS.gene029056.t1 |
chr1.1 | CDS | 81860332 | 81860433 | 81860332 | ID=cds.MS.gene029056.t1;Parent=MS.gene029056.t1 |
Gene Sequence |
Protein sequence |