Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073802.t1 | XP_024634591.1 | 97.4 | 857 | 22 | 0 | 1 | 857 | 1 | 857 | 0.00E+00 | 1322 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073802.t1 | Q9Z1A9 | 35.8 | 243 | 139 | 5 | 293 | 532 | 495 | 723 | 5.5e-36 | 154.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073802.t1 | A0A396JNJ4 | 94.1 | 866 | 42 | 1 | 1 | 857 | 1 | 866 | 0.0e+00 | 1314.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene029056 | MS.gene073802 | PPI |
MS.gene046147 | MS.gene073802 | PPI |
MS.gene74226 | MS.gene073802 | PPI |
MS.gene90787 | MS.gene073802 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073802.t1 | MTR_1g067150 | 97.387 | 842 | 22 | 0 | 16 | 857 | 325 | 1166 | 0.0 | 1679 |
MS.gene073802.t1 | MTR_1g116310 | 52.975 | 874 | 277 | 17 | 11 | 840 | 16 | 799 | 0.0 | 812 |
MS.gene073802.t1 | MTR_5g098140 | 35.714 | 294 | 170 | 8 | 295 | 582 | 106 | 386 | 1.06e-50 | 183 |
MS.gene073802.t1 | MTR_6g016590 | 31.183 | 279 | 163 | 6 | 299 | 568 | 84 | 342 | 1.87e-30 | 124 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene073802.t1 | AT2G37290 | 56.306 | 888 | 325 | 16 | 1 | 850 | 1 | 863 | 0.0 | 904 |
MS.gene073802.t1 | AT2G37290 | 56.816 | 873 | 314 | 16 | 16 | 850 | 16 | 863 | 0.0 | 897 |
MS.gene073802.t1 | AT2G37290 | 54.686 | 907 | 314 | 17 | 16 | 850 | 16 | 897 | 0.0 | 879 |
MS.gene073802.t1 | AT3G55020 | 59.021 | 715 | 255 | 11 | 169 | 853 | 103 | 809 | 0.0 | 764 |
MS.gene073802.t1 | AT3G55020 | 36.957 | 184 | 105 | 6 | 7 | 181 | 19 | 200 | 3.07e-15 | 80.9 |
MS.gene073802.t1 | AT3G55020 | 60.883 | 657 | 230 | 6 | 169 | 805 | 103 | 752 | 0.0 | 747 |
MS.gene073802.t1 | AT3G55020 | 36.957 | 184 | 105 | 6 | 7 | 181 | 19 | 200 | 1.43e-15 | 81.6 |
MS.gene073802.t1 | AT2G39280 | 55.029 | 696 | 277 | 8 | 144 | 811 | 57 | 744 | 0.0 | 687 |
MS.gene073802.t1 | AT2G39280 | 35.000 | 140 | 81 | 4 | 16 | 147 | 13 | 150 | 9.45e-12 | 69.3 |
MS.gene073802.t1 | AT3G55020 | 60.098 | 614 | 218 | 6 | 169 | 762 | 103 | 709 | 0.0 | 686 |
MS.gene073802.t1 | AT3G55020 | 36.957 | 184 | 105 | 6 | 7 | 181 | 19 | 200 | 1.76e-15 | 81.3 |
MS.gene073802.t1 | AT2G39280 | 54.454 | 696 | 276 | 9 | 144 | 811 | 85 | 767 | 0.0 | 672 |
MS.gene073802.t1 | AT2G39280 | 35.000 | 140 | 81 | 4 | 16 | 147 | 41 | 178 | 9.21e-12 | 69.3 |
MS.gene073802.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 3.77e-51 | 185 |
MS.gene073802.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 3.77e-51 | 185 |
MS.gene073802.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 3.77e-51 | 185 |
MS.gene073802.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 3.77e-51 | 185 |
MS.gene073802.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 3.77e-51 | 185 |
MS.gene073802.t1 | AT5G15930 | 34.375 | 224 | 122 | 5 | 299 | 513 | 82 | 289 | 1.27e-30 | 124 |
MS.gene073802.t1 | AT3G02460 | 33.036 | 224 | 125 | 5 | 299 | 513 | 85 | 292 | 3.48e-28 | 116 |
MS.gene073802.t1 | AT3G02460 | 33.036 | 224 | 125 | 5 | 299 | 513 | 85 | 292 | 4.71e-28 | 117 |
MS.gene073802.t1 | AT3G02460 | 33.036 | 224 | 125 | 5 | 299 | 513 | 85 | 292 | 1.45e-27 | 115 |
MS.gene073802.t1 | AT3G02460 | 33.014 | 209 | 116 | 4 | 299 | 498 | 85 | 278 | 2.65e-25 | 107 |
MS.gene073802.t1 | AT3G02460 | 33.014 | 209 | 116 | 4 | 299 | 498 | 85 | 278 | 4.01e-25 | 107 |
Find 197 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTATCTTGTTCTTCCTTAT+TGG | 0.083288 | 1.3:+47046359 | None:intergenic |
CCTTCTTTGTTAACTCTATT+TGG | 0.187885 | 1.3:+47056144 | None:intergenic |
CGCAAGGGTCTTCTAAGTTT+TGG | 0.226875 | 1.3:-47046985 | MS.gene073802:CDS |
ATTCTTATGGATTTACATTA+AGG | 0.237963 | 1.3:-47056756 | MS.gene073802:CDS |
GCATCTTAGTTATTCGAGTT+TGG | 0.268245 | 1.3:-47053136 | MS.gene073802:intron |
GGCTCCTAAGGAAGATATTC+AGG | 0.270608 | 1.3:-47055797 | MS.gene073802:CDS |
AAGATGAAAGATCAGATAAA+TGG | 0.271939 | 1.3:-47056428 | MS.gene073802:CDS |
GCTTGTCCTTACTGCTTGTA+TGG | 0.273379 | 1.3:-47052842 | MS.gene073802:CDS |
GATAGTTACCTTGTAGATTA+AGG | 0.276401 | 1.3:+47056702 | None:intergenic |
GGTCCTGCTCTAGCCGGATT+AGG | 0.287804 | 1.3:+47049034 | None:intergenic |
GGAACTGGAGTTTCTTGTTC+AGG | 0.295607 | 1.3:-47055674 | MS.gene073802:CDS |
GCATTTGTCTCTTCTACCTT+TGG | 0.301018 | 1.3:+47056243 | None:intergenic |
CATCTTAGTTATTCGAGTTT+GGG | 0.302374 | 1.3:-47053135 | MS.gene073802:intron |
AGACCTTGCAGCTCAGAAAT+TGG | 0.322810 | 1.3:-47048974 | MS.gene073802:CDS |
AGCTTCTTGTTCTTGCTTAT+CGG | 0.325690 | 1.3:+47049204 | None:intergenic |
CAGGCAATGAACTTCTTTGC+TGG | 0.328624 | 1.3:-47054376 | MS.gene073802:CDS |
GATAAATACGAACCAAGTTT+AGG | 0.330868 | 1.3:+47053428 | None:intergenic |
TCGAACAGCGCTGGCTCTAA+TGG | 0.332061 | 1.3:-47053075 | MS.gene073802:CDS |
ACCTCTCCTCTAAGATCCTT+TGG | 0.333813 | 1.3:+47055643 | None:intergenic |
GATGCAGAAGCGAGTTAAAA+TGG | 0.337304 | 1.3:-47047912 | MS.gene073802:CDS |
ACCTAATGACAATGGCGATA+TGG | 0.339307 | 1.3:-47052641 | MS.gene073802:CDS |
CACCCTGCTTTGGACGAAAA+TGG | 0.347325 | 1.3:-47055245 | MS.gene073802:CDS |
TCGCTAGATTCCTCAGTGTT+AGG | 0.348075 | 1.3:+47046417 | None:intergenic |
CGTGAAAGATTTCCTAAACT+TGG | 0.349418 | 1.3:-47053440 | MS.gene073802:intron |
GGTTCTGATTCTTCTATAGA+TGG | 0.350793 | 1.3:+47055829 | None:intergenic |
TTTCCCAGGTCACCCTGCTT+TGG | 0.353053 | 1.3:-47055255 | MS.gene073802:CDS |
ACTCTATTGCAATCACTTGC+TGG | 0.355603 | 1.3:-47052886 | MS.gene073802:CDS |
GGAACTAGAAACAGCTCTAA+TGG | 0.366885 | 1.3:-47050494 | MS.gene073802:CDS |
CAGGTATGGCAAGCCTTTGT+AGG | 0.371064 | 1.3:-47055531 | MS.gene073802:CDS |
TGTGACCGAGGCAAGATTGC+AGG | 0.378625 | 1.3:-47052809 | MS.gene073802:CDS |
TTTGCAGGTGGTTTGGTTGA+AGG | 0.383780 | 1.3:-47051126 | MS.gene073802:intron |
CTTGTTCTTGCTTATCGGTA+AGG | 0.384288 | 1.3:+47049209 | None:intergenic |
ATAAAAGAAGTTACTGATCC+TGG | 0.388707 | 1.3:-47056084 | MS.gene073802:CDS |
GAAGAATCAGAACCTGTAGA+AGG | 0.395401 | 1.3:-47055820 | MS.gene073802:CDS |
ACCATATCGCCATTGTCATT+AGG | 0.400025 | 1.3:+47052640 | None:intergenic |
TCCAAGAAAAGAATCCAATA+AGG | 0.400915 | 1.3:-47046373 | MS.gene073802:CDS |
CTGGCTCTAATGGAATTATA+TGG | 0.402908 | 1.3:-47053065 | MS.gene073802:intron |
TCCTTAGGAGCCCCTTCTAC+AGG | 0.404298 | 1.3:+47055808 | None:intergenic |
TATCTGCTGCAGCAGGGAAA+TGG | 0.407229 | 1.3:-47055422 | MS.gene073802:CDS |
CAACTTAGATGCAAGCCCTT+TGG | 0.408640 | 1.3:+47052708 | None:intergenic |
CCTCTCCTCTAAGATCCTTT+GGG | 0.413885 | 1.3:+47055644 | None:intergenic |
CAATAATAATAACCTGAGTA+TGG | 0.421905 | 1.3:+47051067 | None:intergenic |
AGTTAATCATCTAGATTACT+TGG | 0.423177 | 1.3:-47053320 | MS.gene073802:CDS |
AGACCAGCGTTGAACCTTAC+GGG | 0.424285 | 1.3:+47055957 | None:intergenic |
TGGGATGTTCTGCTATTTGA+AGG | 0.428824 | 1.3:-47053116 | MS.gene073802:CDS |
TTGTTCTTGCTTATCGGTAA+GGG | 0.448342 | 1.3:+47049210 | None:intergenic |
CTCTTCTACCTTTGGACTGT+CGG | 0.451694 | 1.3:+47056251 | None:intergenic |
CTCCTCATAGGGTAAGTAAC+GGG | 0.451749 | 1.3:-47056299 | MS.gene073802:CDS |
TGCAAAGGAGCTACACCATT+CGG | 0.452553 | 1.3:-47055992 | MS.gene073802:CDS |
AAGGAAATGATTCAAGTAAG+AGG | 0.454115 | 1.3:-47056206 | MS.gene073802:CDS |
AAGAAGAGGGAACTCCTCAT+AGG | 0.454398 | 1.3:-47056311 | MS.gene073802:CDS |
CTATATCTTTGTGCGTATTG+AGG | 0.455696 | 1.3:+47056733 | None:intergenic |
ATGAAAGTTGAGAAGATAAA+CGG | 0.456984 | 1.3:-47055868 | MS.gene073802:CDS |
TATGTGTACAGGGATTCTTA+TGG | 0.457336 | 1.3:-47056769 | MS.gene073802:intron |
TAGAGCTGTTTCTAGTTCCT+CGG | 0.457779 | 1.3:+47050498 | None:intergenic |
AGAGCTCAATATTTCTTCAA+TGG | 0.459160 | 1.3:+47055912 | None:intergenic |
GAGGAGAAGTAACCTGTTCA+TGG | 0.459590 | 1.3:+47052512 | None:intergenic |
CTTGTCCTTACTGCTTGTAT+GGG | 0.459930 | 1.3:-47052841 | MS.gene073802:CDS |
GATGTTCTATCTGCTGCAGC+AGG | 0.460337 | 1.3:-47055429 | MS.gene073802:CDS |
TAGACCAGCGTTGAACCTTA+CGG | 0.461509 | 1.3:+47055956 | None:intergenic |
GCTACCCTTCAGTATGAATC+TGG | 0.461520 | 1.3:-47047872 | MS.gene073802:CDS |
TCCCCTTCACTGGCCCTCCC+AGG | 0.461692 | 1.3:+47056066 | None:intergenic |
GTAACCTGTTCATGGACATC+TGG | 0.461869 | 1.3:+47052520 | None:intergenic |
TCCACAATTTCGAATCATAC+AGG | 0.462928 | 1.3:-47057293 | MS.gene073802:intron |
TCGTCCAAAGCAGGGTGACC+TGG | 0.464111 | 1.3:+47055251 | None:intergenic |
GGTTGTGCTATGCAGATTGC+TGG | 0.464664 | 1.3:-47051105 | MS.gene073802:CDS |
ACTTGAATCATCCCCTTCAC+TGG | 0.468248 | 1.3:+47056056 | None:intergenic |
GGGTCTTTCTTTCTTCCGAA+TGG | 0.473917 | 1.3:+47055977 | None:intergenic |
GTCTTGCTCTGCTCTTCTGC+GGG | 0.475371 | 1.3:+47048993 | None:intergenic |
ACCTGTAGAAGGGGCTCCTA+AGG | 0.476336 | 1.3:-47055809 | MS.gene073802:CDS |
TCTTTATGAACATGATTCCA+TGG | 0.476774 | 1.3:-47053255 | MS.gene073802:CDS |
GGAGTCCCAAAGGATCTTAG+AGG | 0.478569 | 1.3:-47055649 | MS.gene073802:CDS |
TCTCCCTGAATATCTTCCTT+AGG | 0.479753 | 1.3:+47055793 | None:intergenic |
GAACTGGAGTTTCTTGTTCA+GGG | 0.481923 | 1.3:-47055673 | MS.gene073802:CDS |
TAAGCATGACCCAGGGTCAC+TGG | 0.491506 | 1.3:-47052677 | MS.gene073802:CDS |
TAAGAATGTGCAGTTGGACT+TGG | 0.492915 | 1.3:-47052611 | MS.gene073802:CDS |
AGAAACAGCTCTAATGGAAA+AGG | 0.495330 | 1.3:-47050488 | MS.gene073802:CDS |
TACATGGTCAGGTCCTAATC+CGG | 0.496222 | 1.3:-47049047 | MS.gene073802:intron |
CCACTTTGGCATCAATATTG+AGG | 0.496306 | 1.3:+47052551 | None:intergenic |
TTGAGCTCTCGTGTCAAGAA+AGG | 0.498122 | 1.3:-47055898 | MS.gene073802:CDS |
TTTCTTCTACCAGTGACCCT+GGG | 0.499737 | 1.3:+47052668 | None:intergenic |
GCAGATTGAGCAGTTGGAGC+AGG | 0.500212 | 1.3:-47049254 | MS.gene073802:intron |
GACATACCGCGAACTTTCCC+AGG | 0.500707 | 1.3:-47055269 | MS.gene073802:CDS |
CCCCTCTGTTGGGTACTGTC+AGG | 0.501153 | 1.3:-47055177 | MS.gene073802:intron |
CCAAATAGAGTTAACAAAGA+AGG | 0.502011 | 1.3:-47056144 | MS.gene073802:CDS |
GGTCTTGCTCTGCTCTTCTG+CGG | 0.503407 | 1.3:+47048992 | None:intergenic |
TGCACTAATGAGACACTAGA+TGG | 0.505018 | 1.3:-47055766 | MS.gene073802:CDS |
CCTACCAGATGTCCATGAAC+AGG | 0.505495 | 1.3:-47052524 | MS.gene073802:intron |
ATTGTGGAGGAAATTGAAAG+TGG | 0.506377 | 1.3:+47057308 | None:intergenic |
AGAAGAAATGATAGAATCCC+AGG | 0.509368 | 1.3:-47053634 | MS.gene073802:intron |
ACAAGAAGCTGCCATGCTGC+AGG | 0.510239 | 1.3:-47049191 | MS.gene073802:intron |
CTCGACATAACCCCTCTGTT+GGG | 0.511757 | 1.3:-47055187 | MS.gene073802:CDS |
ACCTGTATGATTCGAAATTG+TGG | 0.514634 | 1.3:+47057292 | None:intergenic |
TCTAGATTACTTGGGAGTGC+AGG | 0.519245 | 1.3:-47053311 | MS.gene073802:CDS |
CATCTCAGCAATTGATGCCA+TGG | 0.521481 | 1.3:+47047931 | None:intergenic |
CAGTTCCTGCAATCTTGCCT+CGG | 0.524449 | 1.3:+47052804 | None:intergenic |
ATCTGGTAGGGAATCCACTT+TGG | 0.526741 | 1.3:+47052537 | None:intergenic |
GGTCCTAATCCGGCTAGAGC+AGG | 0.527048 | 1.3:-47049037 | MS.gene073802:CDS |
ATCCTGGGAGGGCCAGTGAA+GGG | 0.527274 | 1.3:-47056068 | MS.gene073802:CDS |
TAAAATGGCAGAAAGTATGT+TGG | 0.530158 | 1.3:-47047897 | MS.gene073802:CDS |
AGAAGAGGGAACTCCTCATA+GGG | 0.537183 | 1.3:-47056310 | MS.gene073802:CDS |
CTTTATGAACATGATTCCAT+GGG | 0.540949 | 1.3:-47053254 | MS.gene073802:CDS |
AACTAACAGTTGCGAAGGCA+AGG | 0.541203 | 1.3:-47055457 | MS.gene073802:CDS |
TCCTGGGAGGGCCAGTGAAG+GGG | 0.541304 | 1.3:-47056067 | MS.gene073802:CDS |
AAGAATCAGAACCTGTAGAA+GGG | 0.543866 | 1.3:-47055819 | MS.gene073802:CDS |
GCTCGACATAACCCCTCTGT+TGG | 0.545869 | 1.3:-47055188 | MS.gene073802:CDS |
CTGATTCTTCTATAGATGGA+AGG | 0.546548 | 1.3:+47055833 | None:intergenic |
CGTCCAAAGCAGGGTGACCT+GGG | 0.547394 | 1.3:+47055252 | None:intergenic |
AGAAACTCCAGTTCCTTCCA+TGG | 0.549481 | 1.3:+47055682 | None:intergenic |
TACAAGCAGTAAGGACAAGC+TGG | 0.549735 | 1.3:+47052845 | None:intergenic |
TCCCCGTTACTTACCCTATG+AGG | 0.550516 | 1.3:+47056297 | None:intergenic |
ATCGTCTGCAGTTGAGCGCA+AGG | 0.552982 | 1.3:-47050453 | MS.gene073802:CDS |
TAAAAGAAGTTACTGATCCT+GGG | 0.553840 | 1.3:-47056083 | MS.gene073802:CDS |
TATGCTATTTCGAACAGCGC+TGG | 0.554998 | 1.3:-47053084 | MS.gene073802:CDS |
AACATGATTCCATGGGAAAG+TGG | 0.555280 | 1.3:-47053247 | MS.gene073802:intron |
TCTTCAATGGCACTAAGAGA+TGG | 0.555356 | 1.3:+47055925 | None:intergenic |
CTGTTCATGGACATCTGGTA+GGG | 0.557704 | 1.3:+47052525 | None:intergenic |
AATGGCAGAAAGTATGTTGG+AGG | 0.558698 | 1.3:-47047894 | MS.gene073802:CDS |
ATAGAAGAAAGGTCAAAGAA+AGG | 0.558990 | 1.3:-47052748 | MS.gene073802:CDS |
GATCCTGGGAGGGCCAGTGA+AGG | 0.560349 | 1.3:-47056069 | MS.gene073802:CDS |
GATCATGCAGATTGAGCAGT+TGG | 0.560886 | 1.3:-47049260 | MS.gene073802:intron |
TGCTAGTAGTAAACGCCTCA+AGG | 0.560918 | 1.3:+47055214 | None:intergenic |
CCTGTTCATGGACATCTGGT+AGG | 0.561806 | 1.3:+47052524 | None:intergenic |
ACTTGGGAGTGCAGGTGGCA+TGG | 0.563275 | 1.3:-47053303 | MS.gene073802:CDS |
CTTGGAGTGGCATTGTCACG+CGG | 0.563738 | 1.3:+47046390 | None:intergenic |
CCTCAATATTGATGCCAAAG+TGG | 0.565085 | 1.3:-47052551 | MS.gene073802:CDS |
ATTGGAAGTTCACATGCTCC+AGG | 0.566177 | 1.3:-47048956 | MS.gene073802:intron |
TAAGGAAGATATTCAGGGAG+AGG | 0.568280 | 1.3:-47055791 | MS.gene073802:CDS |
CGGGGATGATTCAAGTAGCA+AGG | 0.569254 | 1.3:-47056280 | MS.gene073802:CDS |
AGAAAAGATCTGCCATACTC+AGG | 0.572795 | 1.3:-47051079 | MS.gene073802:intron |
TTAGTTACAACAACAGATGC+AGG | 0.574166 | 1.3:-47052919 | MS.gene073802:CDS |
ATCTTGCCTCGGTCACAGCT+AGG | 0.574382 | 1.3:+47052815 | None:intergenic |
TGTTGAAAATCCTCCACGCA+AGG | 0.576593 | 1.3:-47047001 | MS.gene073802:CDS |
GATTGAGCAGTTGGAGCAGG+AGG | 0.577057 | 1.3:-47049251 | MS.gene073802:CDS |
AGCTGATAAGAATGTGCAGT+TGG | 0.578288 | 1.3:-47052617 | MS.gene073802:CDS |
GTATAACTCAGGACATTCGT+TGG | 0.580032 | 1.3:-47053690 | MS.gene073802:intron |
CTTCCAATTTCTGAGCTGCA+AGG | 0.580039 | 1.3:+47048971 | None:intergenic |
TCTGTTGTTGTAACTAATGC+AGG | 0.580339 | 1.3:+47052925 | None:intergenic |
TACAGCAAATAATTCTGCAA+AGG | 0.580535 | 1.3:-47056007 | MS.gene073802:CDS |
GTTAATCATCTAGATTACTT+GGG | 0.581715 | 1.3:-47053319 | MS.gene073802:CDS |
GCTCCTAAGGAAGATATTCA+GGG | 0.582697 | 1.3:-47055796 | MS.gene073802:CDS |
ATTGACCAGATTCATACTGA+AGG | 0.583115 | 1.3:+47047867 | None:intergenic |
CTAAAGCATTATCTTCTCCA+AGG | 0.584228 | 1.3:-47047844 | MS.gene073802:intron |
GGTAACCCATACAAGCAGTA+AGG | 0.586072 | 1.3:+47052836 | None:intergenic |
GGGTGACCTGGGAAAGTTCG+CGG | 0.586499 | 1.3:+47055263 | None:intergenic |
ACCTGACAGTACCCAACAGA+GGG | 0.587069 | 1.3:+47055176 | None:intergenic |
TAGATGGTGGTAACAGCCCA+AGG | 0.587236 | 1.3:-47055750 | MS.gene073802:CDS |
AGTAGCGAGGTAAAAGAAGA+GGG | 0.587418 | 1.3:-47056324 | MS.gene073802:CDS |
AGATTACTTGGGAGTGCAGG+TGG | 0.589590 | 1.3:-47053308 | MS.gene073802:CDS |
TTGACCAGATTCATACTGAA+GGG | 0.593499 | 1.3:+47047868 | None:intergenic |
CAAGAAACTAACAGTTGCGA+AGG | 0.600202 | 1.3:-47055462 | MS.gene073802:CDS |
AAGTAGCGAGGTAAAAGAAG+AGG | 0.600562 | 1.3:-47056325 | MS.gene073802:CDS |
CCCAAAGGATCTTAGAGGAG+AGG | 0.605081 | 1.3:-47055644 | MS.gene073802:intron |
ATAAAGATTGATAGAAACCA+TGG | 0.606123 | 1.3:+47053271 | None:intergenic |
AGCTCTAATGGAAAAGGTGA+AGG | 0.608776 | 1.3:-47050482 | MS.gene073802:CDS |
GGTTTCTTCCGACAGTCCAA+AGG | 0.608808 | 1.3:-47056259 | MS.gene073802:CDS |
TCGTGTGTTCACACCTACAA+AGG | 0.609319 | 1.3:+47055518 | None:intergenic |
AGAAGTTACTGATCCTGGGA+GGG | 0.613294 | 1.3:-47056079 | MS.gene073802:CDS |
AATGCAGACATAATTAGTGA+AGG | 0.613496 | 1.3:-47056225 | MS.gene073802:CDS |
TATGCAGGAAAAGTATGAGA+AGG | 0.613713 | 1.3:-47047954 | MS.gene073802:intron |
AGAGTATTCCTTAATCTACA+AGG | 0.616845 | 1.3:-47056710 | MS.gene073802:intron |
GTTGAAAATCCTCCACGCAA+GGG | 0.619020 | 1.3:-47047000 | MS.gene073802:CDS |
GGGTTACCTAGCTGTGACCG+AGG | 0.620962 | 1.3:-47052821 | MS.gene073802:CDS |
TGTAGGTGTGAACACACGAC+GGG | 0.624136 | 1.3:-47055514 | MS.gene073802:CDS |
AGAATCAGAACCTGTAGAAG+GGG | 0.629859 | 1.3:-47055818 | MS.gene073802:CDS |
CTGGAGTTTCTTGTTCAGGG+AGG | 0.633518 | 1.3:-47055670 | MS.gene073802:CDS |
TGTTCAGGGAGGAGTCCCAA+AGG | 0.636381 | 1.3:-47055659 | MS.gene073802:CDS |
CTGTTCGAAATAGCATAACA+CGG | 0.636645 | 1.3:+47053090 | None:intergenic |
TGCACATAGAACCTGCAGCA+TGG | 0.640917 | 1.3:+47049180 | None:intergenic |
ACTCCTCATAGGGTAAGTAA+CGG | 0.642978 | 1.3:-47056300 | MS.gene073802:CDS |
TCTATAATATCTAAAACAGA+CGG | 0.643315 | 1.3:+47052766 | None:intergenic |
GGAAAAGTATGAGAAGGCCA+TGG | 0.644566 | 1.3:-47047948 | MS.gene073802:CDS |
ATGTTCTATCTGCTGCAGCA+GGG | 0.649404 | 1.3:-47055428 | MS.gene073802:CDS |
AGGTGTGAACACACGACGGG+TGG | 0.649560 | 1.3:-47055511 | MS.gene073802:CDS |
CTTAGAAGACCCTTGCGTGG+AGG | 0.650170 | 1.3:+47046991 | None:intergenic |
ATGGAGAAAGCAGATTGAGA+AGG | 0.650978 | 1.3:-47055403 | MS.gene073802:intron |
TCGTCTGCAGTTGAGCGCAA+GGG | 0.651354 | 1.3:-47050452 | MS.gene073802:intron |
AGGCAAGATTGCAGGAACTG+AGG | 0.652313 | 1.3:-47052801 | MS.gene073802:CDS |
TCATATCTTGAACAGAGCCG+AGG | 0.653362 | 1.3:-47050515 | MS.gene073802:intron |
TAATATCTAAAACAGACGGT+CGG | 0.666423 | 1.3:+47052770 | None:intergenic |
GGAAGAAAGAAAGACCCGTA+AGG | 0.666823 | 1.3:-47055971 | MS.gene073802:CDS |
AAACTTAGAAGACCCTTGCG+TGG | 0.668741 | 1.3:+47046988 | None:intergenic |
ATTCTTCTATAGATGGAAGG+TGG | 0.669300 | 1.3:+47055836 | None:intergenic |
TGTATGATTCGAAATTGTGG+AGG | 0.670349 | 1.3:+47057295 | None:intergenic |
ATTGAAAGCTGAAAGTAGCG+AGG | 0.682041 | 1.3:-47056337 | MS.gene073802:CDS |
TCCTCATAGGGTAAGTAACG+GGG | 0.691440 | 1.3:-47056298 | MS.gene073802:CDS |
AAGAAGTTACTGATCCTGGG+AGG | 0.692089 | 1.3:-47056080 | MS.gene073802:CDS |
AGATGGTGGTAACAGCCCAA+GGG | 0.696356 | 1.3:-47055749 | MS.gene073802:CDS |
TGGCATGGATATCTGCACCA+TGG | 0.701471 | 1.3:-47053288 | MS.gene073802:CDS |
TACCTGACAGTACCCAACAG+AGG | 0.706079 | 1.3:+47055175 | None:intergenic |
ACTAATGAGACACTAGATGG+TGG | 0.708991 | 1.3:-47055763 | MS.gene073802:CDS |
TTGTAGGTGTGAACACACGA+CGG | 0.712835 | 1.3:-47055515 | MS.gene073802:CDS |
TGTGCTATGCAGATTGCTGG+AGG | 0.721337 | 1.3:-47051102 | MS.gene073802:CDS |
AAAATGGCAGAAATTCCTTG+AGG | 0.726393 | 1.3:-47055229 | MS.gene073802:CDS |
AGACCCGTAAGGTTCAACGC+TGG | 0.736163 | 1.3:-47055960 | MS.gene073802:CDS |
ACAGGGAAAACCTAACACTG+AGG | 0.763133 | 1.3:-47046427 | MS.gene073802:intron |
CCTGACAGTACCCAACAGAG+GGG | 0.792308 | 1.3:+47055177 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 47046356 | 47057340 | 47046356 | ID=MS.gene073802 |
chr1.3 | mRNA | 47046356 | 47057340 | 47046356 | ID=MS.gene073802.t1;Parent=MS.gene073802 |
chr1.3 | exon | 47057294 | 47057340 | 47057294 | ID=MS.gene073802.t1.exon1;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47057294 | 47057340 | 47057294 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47056711 | 47056780 | 47056711 | ID=MS.gene073802.t1.exon2;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47056711 | 47056780 | 47056711 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47055645 | 47056457 | 47055645 | ID=MS.gene073802.t1.exon3;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47055645 | 47056457 | 47055645 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47055404 | 47055550 | 47055404 | ID=MS.gene073802.t1.exon4;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47055404 | 47055550 | 47055404 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47055178 | 47055291 | 47055178 | ID=MS.gene073802.t1.exon5;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47055178 | 47055291 | 47055178 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47054337 | 47054395 | 47054337 | ID=MS.gene073802.t1.exon6;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47054337 | 47054395 | 47054337 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47053635 | 47053701 | 47053635 | ID=MS.gene073802.t1.exon7;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47053635 | 47053701 | 47053635 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47053441 | 47053492 | 47053441 | ID=MS.gene073802.t1.exon8;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47053441 | 47053492 | 47053441 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47053248 | 47053340 | 47053248 | ID=MS.gene073802.t1.exon9;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47053248 | 47053340 | 47053248 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47053066 | 47053149 | 47053066 | ID=MS.gene073802.t1.exon10;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47053066 | 47053149 | 47053066 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47052525 | 47052949 | 47052525 | ID=MS.gene073802.t1.exon11;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47052525 | 47052949 | 47052525 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47051080 | 47051141 | 47051080 | ID=MS.gene073802.t1.exon12;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47051080 | 47051141 | 47051080 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47050453 | 47050522 | 47050453 | ID=MS.gene073802.t1.exon13;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47050453 | 47050522 | 47050453 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47049192 | 47049272 | 47049192 | ID=MS.gene073802.t1.exon14;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47049192 | 47049272 | 47049192 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47048957 | 47049058 | 47048957 | ID=MS.gene073802.t1.exon15;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47048957 | 47049058 | 47048957 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47047845 | 47047969 | 47047845 | ID=MS.gene073802.t1.exon16;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47047845 | 47047969 | 47047845 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47046960 | 47047032 | 47046960 | ID=MS.gene073802.t1.exon17;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47046960 | 47047032 | 47046960 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
chr1.3 | exon | 47046356 | 47046445 | 47046356 | ID=MS.gene073802.t1.exon18;Parent=MS.gene073802.t1 |
chr1.3 | CDS | 47046356 | 47046445 | 47046356 | ID=cds.MS.gene073802.t1;Parent=MS.gene073802.t1 |
Gene Sequence |
Protein sequence |