Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029887.t1 | XP_024634591.1 | 97 | 857 | 26 | 0 | 1 | 857 | 1 | 857 | 0.00E+00 | 1323.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029887.t1 | Q9Z1A9 | 35.8 | 243 | 139 | 5 | 293 | 532 | 495 | 723 | 5.5e-36 | 154.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029887.t1 | A0A396JNJ4 | 93.6 | 866 | 46 | 1 | 1 | 857 | 1 | 866 | 0.0e+00 | 1315.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74226 | MS.gene029887 | PPI |
| MS.gene029887 | MS.gene046147 | PPI |
| MS.gene029887 | MS.gene029056 | PPI |
| MS.gene90787 | MS.gene029887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029887.t1 | MTR_1g067150 | 97.387 | 842 | 22 | 0 | 16 | 857 | 325 | 1166 | 0.0 | 1679 |
| MS.gene029887.t1 | MTR_1g116310 | 53.089 | 874 | 276 | 17 | 11 | 840 | 16 | 799 | 0.0 | 816 |
| MS.gene029887.t1 | MTR_5g098140 | 35.714 | 294 | 170 | 8 | 295 | 582 | 106 | 386 | 1.23e-50 | 183 |
| MS.gene029887.t1 | MTR_6g016590 | 31.183 | 279 | 163 | 6 | 299 | 568 | 84 | 342 | 2.13e-30 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029887.t1 | AT2G37290 | 56.689 | 882 | 331 | 17 | 1 | 850 | 1 | 863 | 0.0 | 907 |
| MS.gene029887.t1 | AT2G37290 | 57.209 | 867 | 320 | 17 | 16 | 850 | 16 | 863 | 0.0 | 900 |
| MS.gene029887.t1 | AT2G37290 | 55.432 | 902 | 315 | 19 | 16 | 850 | 16 | 897 | 0.0 | 881 |
| MS.gene029887.t1 | AT3G55020 | 59.161 | 715 | 254 | 11 | 169 | 853 | 103 | 809 | 0.0 | 766 |
| MS.gene029887.t1 | AT3G55020 | 36.957 | 184 | 105 | 6 | 7 | 181 | 19 | 200 | 3.12e-15 | 80.9 |
| MS.gene029887.t1 | AT3G55020 | 61.035 | 657 | 229 | 6 | 169 | 805 | 103 | 752 | 0.0 | 749 |
| MS.gene029887.t1 | AT3G55020 | 36.957 | 184 | 105 | 6 | 7 | 181 | 19 | 200 | 1.31e-15 | 82.0 |
| MS.gene029887.t1 | AT2G39280 | 55.172 | 696 | 276 | 8 | 144 | 811 | 57 | 744 | 0.0 | 690 |
| MS.gene029887.t1 | AT2G39280 | 35.000 | 140 | 81 | 4 | 16 | 147 | 13 | 150 | 9.13e-12 | 69.3 |
| MS.gene029887.t1 | AT3G55020 | 60.261 | 614 | 217 | 6 | 169 | 762 | 103 | 709 | 0.0 | 689 |
| MS.gene029887.t1 | AT3G55020 | 36.957 | 184 | 105 | 6 | 7 | 181 | 19 | 200 | 1.50e-15 | 81.6 |
| MS.gene029887.t1 | AT2G39280 | 54.598 | 696 | 275 | 9 | 144 | 811 | 85 | 767 | 0.0 | 674 |
| MS.gene029887.t1 | AT2G39280 | 35.000 | 140 | 81 | 4 | 16 | 147 | 41 | 178 | 9.53e-12 | 69.3 |
| MS.gene029887.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 4.81e-51 | 184 |
| MS.gene029887.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 4.81e-51 | 184 |
| MS.gene029887.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 4.81e-51 | 184 |
| MS.gene029887.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 4.81e-51 | 184 |
| MS.gene029887.t1 | AT3G07890 | 35.216 | 301 | 176 | 8 | 295 | 589 | 109 | 396 | 4.81e-51 | 184 |
| MS.gene029887.t1 | AT5G15930 | 34.375 | 224 | 122 | 5 | 299 | 513 | 82 | 289 | 1.45e-30 | 124 |
| MS.gene029887.t1 | AT3G02460 | 33.036 | 224 | 125 | 5 | 299 | 513 | 85 | 292 | 3.72e-28 | 116 |
| MS.gene029887.t1 | AT3G02460 | 33.036 | 224 | 125 | 5 | 299 | 513 | 85 | 292 | 4.41e-28 | 117 |
| MS.gene029887.t1 | AT3G02460 | 33.036 | 224 | 125 | 5 | 299 | 513 | 85 | 292 | 1.54e-27 | 115 |
| MS.gene029887.t1 | AT3G02460 | 33.014 | 209 | 116 | 4 | 299 | 498 | 85 | 278 | 2.51e-25 | 107 |
| MS.gene029887.t1 | AT3G02460 | 33.014 | 209 | 116 | 4 | 299 | 498 | 85 | 278 | 3.76e-25 | 107 |
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCTTGTTCTTCCTTAT+TGG | 0.083288 | 1.4:+54005137 | None:intergenic |
| CCTTCTTTGTTAACTCTATT+TGG | 0.187885 | 1.4:+54014925 | None:intergenic |
| CGCAAGGGTCTTCTAAGTTT+TGG | 0.226875 | 1.4:-54005763 | MS.gene029887:CDS |
| ATTCTTATGGATTTACATTA+AGG | 0.237963 | 1.4:-54015538 | MS.gene029887:CDS |
| GCATCTTAGTTATTCGAGTT+TGG | 0.268245 | 1.4:-54011915 | MS.gene029887:intron |
| GGCTCCTAAGGAAGATATTC+AGG | 0.270608 | 1.4:-54014578 | MS.gene029887:CDS |
| AAGATGAAAGATCAGATAAA+TGG | 0.271939 | 1.4:-54015209 | MS.gene029887:CDS |
| GCTTGTCCTTACTGCTTGTA+TGG | 0.273379 | 1.4:-54011621 | MS.gene029887:CDS |
| GATAGTTACCTTGTAGATTA+AGG | 0.276401 | 1.4:+54015484 | None:intergenic |
| GGTCCTGCTCTAGCCGGATT+AGG | 0.287804 | 1.4:+54007813 | None:intergenic |
| GGAACTGGAGTTTCTTGTTC+AGG | 0.295607 | 1.4:-54014455 | MS.gene029887:CDS |
| GCATTTGTCTCTTCTACCTT+TGG | 0.301018 | 1.4:+54015024 | None:intergenic |
| CATCTTAGTTATTCGAGTTT+GGG | 0.302374 | 1.4:-54011914 | MS.gene029887:intron |
| AGACCTTGCAGCTCAGAAAT+TGG | 0.322810 | 1.4:-54007753 | MS.gene029887:CDS |
| AGCTTCTTGTTCTTGCTTAT+CGG | 0.325690 | 1.4:+54007983 | None:intergenic |
| CAGGCAATGAACTTCTTTGC+TGG | 0.328624 | 1.4:-54013155 | MS.gene029887:CDS |
| GATAAATACGAACCAAGTTT+AGG | 0.330868 | 1.4:+54012207 | None:intergenic |
| TCGAACAGCGCTGGCTCTAA+TGG | 0.332061 | 1.4:-54011854 | MS.gene029887:CDS |
| ACCTCTCCTCTAAGATCCTT+TGG | 0.333813 | 1.4:+54014424 | None:intergenic |
| GATGCAGAAGCGAGTTAAAA+TGG | 0.337304 | 1.4:-54006691 | MS.gene029887:CDS |
| ACCTAATGACAATGGCGATA+TGG | 0.339307 | 1.4:-54011420 | MS.gene029887:CDS |
| CATGTTTACAGGGATTCTTA+TGG | 0.344482 | 1.4:-54015551 | MS.gene029887:intron |
| CACCCTGCTTTGGACGAAAA+TGG | 0.347325 | 1.4:-54014026 | MS.gene029887:CDS |
| TCGCTAGATTCCTCAGTGTT+AGG | 0.348075 | 1.4:+54005195 | None:intergenic |
| CGTGAAAGATTTCCTAAACT+TGG | 0.349418 | 1.4:-54012219 | MS.gene029887:intron |
| GGTTCTGATTCTTCTATAGA+TGG | 0.350793 | 1.4:+54014610 | None:intergenic |
| TTTCCCAGGTCACCCTGCTT+TGG | 0.353053 | 1.4:-54014036 | MS.gene029887:CDS |
| ACTCTATTGCAATCACTTGC+TGG | 0.355603 | 1.4:-54011665 | MS.gene029887:CDS |
| GGAACTAGAAACAGCTCTAA+TGG | 0.366885 | 1.4:-54009273 | MS.gene029887:CDS |
| CAGGTATGGCAAGCCTTTGT+AGG | 0.371064 | 1.4:-54014312 | MS.gene029887:CDS |
| TGTGACCGAGGCAAGATTGC+AGG | 0.378625 | 1.4:-54011588 | MS.gene029887:CDS |
| TTTGCAGGTGGTTTGGTTGA+AGG | 0.383780 | 1.4:-54009905 | MS.gene029887:intron |
| CTTGTTCTTGCTTATCGGTA+AGG | 0.384288 | 1.4:+54007988 | None:intergenic |
| ATAAAAGAAGTTACTGATCC+TGG | 0.388707 | 1.4:-54014865 | MS.gene029887:CDS |
| GAAGAATCAGAACCTGTAGA+AGG | 0.395401 | 1.4:-54014601 | MS.gene029887:CDS |
| ACCATATCGCCATTGTCATT+AGG | 0.400025 | 1.4:+54011419 | None:intergenic |
| TCCAAGAAAAGAATCCAATA+AGG | 0.400915 | 1.4:-54005151 | MS.gene029887:CDS |
| CTGGCTCTAATGGAATTATA+TGG | 0.402908 | 1.4:-54011844 | MS.gene029887:intron |
| TCCTTAGGAGCCCCTTCTAC+AGG | 0.404298 | 1.4:+54014589 | None:intergenic |
| TGCCAGAAGAAAATGCCTTT+TGG | 0.406728 | 1.4:-54013115 | MS.gene029887:intron |
| TATCTGCTGCAGCAGGGAAA+TGG | 0.407229 | 1.4:-54014203 | MS.gene029887:CDS |
| CAACTTAGATGCAAGCCCTT+TGG | 0.408640 | 1.4:+54011487 | None:intergenic |
| CCTCTCCTCTAAGATCCTTT+GGG | 0.413885 | 1.4:+54014425 | None:intergenic |
| CAATAATAATAACCTGAGTA+TGG | 0.421905 | 1.4:+54009846 | None:intergenic |
| AGTTAATCATCTAGATTACT+TGG | 0.423177 | 1.4:-54012099 | MS.gene029887:CDS |
| AGACCAGCGTTGAACCTTAC+GGG | 0.424285 | 1.4:+54014738 | None:intergenic |
| TGGGATGTTCTGCTATTTGA+AGG | 0.428824 | 1.4:-54011895 | MS.gene029887:CDS |
| CTCCTCATAGGGTACGTAAC+GGG | 0.431334 | 1.4:-54015080 | MS.gene029887:CDS |
| TTGGTTGGCGTGATAGATAC+AGG | 0.431586 | 1.4:-54005738 | MS.gene029887:CDS |
| TTGTTCTTGCTTATCGGTAA+GGG | 0.448342 | 1.4:+54007989 | None:intergenic |
| CTCTTCTACCTTTGGACTGT+CGG | 0.451694 | 1.4:+54015032 | None:intergenic |
| AAGGAAATGATTCAAGTAAG+AGG | 0.454115 | 1.4:-54014987 | MS.gene029887:CDS |
| AAGAAGAGGGAACTCCTCAT+AGG | 0.454398 | 1.4:-54015092 | MS.gene029887:CDS |
| CTATATCTTTGTGCGTATTG+AGG | 0.455696 | 1.4:+54015515 | None:intergenic |
| ATGAAAGTTGAGAAGATAAA+CGG | 0.456984 | 1.4:-54014649 | MS.gene029887:CDS |
| TAGAGCTGTTTCTAGTTCCT+CGG | 0.457779 | 1.4:+54009277 | None:intergenic |
| AGAGCTCAATATTTCTTCAA+TGG | 0.459160 | 1.4:+54014693 | None:intergenic |
| GAGGAGAAGTAACCTGTTCA+TGG | 0.459590 | 1.4:+54011291 | None:intergenic |
| CTTGTCCTTACTGCTTGTAT+GGG | 0.459930 | 1.4:-54011620 | MS.gene029887:CDS |
| GATGTTCTATCTGCTGCAGC+AGG | 0.460337 | 1.4:-54014210 | MS.gene029887:CDS |
| GGTTGAGCTATGCAGATTGC+TGG | 0.460576 | 1.4:-54009884 | MS.gene029887:CDS |
| TAGACCAGCGTTGAACCTTA+CGG | 0.461509 | 1.4:+54014737 | None:intergenic |
| GCTACCCTTCAGTATGAATC+TGG | 0.461520 | 1.4:-54006651 | MS.gene029887:CDS |
| TCCCCTTCACTGGCCCTCCC+AGG | 0.461692 | 1.4:+54014847 | None:intergenic |
| GTAACCTGTTCATGGACATC+TGG | 0.461869 | 1.4:+54011299 | None:intergenic |
| TCCACAATTTCGAATCATAC+AGG | 0.462928 | 1.4:-54016095 | MS.gene029887:intron |
| TCGTCCAAAGCAGGGTGACC+TGG | 0.464111 | 1.4:+54014032 | None:intergenic |
| ACTTGAATCATCCCCTTCAC+TGG | 0.468248 | 1.4:+54014837 | None:intergenic |
| GGGTCTTTCTTTCTTCCGAA+TGG | 0.473917 | 1.4:+54014758 | None:intergenic |
| GTCTTGCTCTGCTCTTCTGC+GGG | 0.475371 | 1.4:+54007772 | None:intergenic |
| ACCTGTAGAAGGGGCTCCTA+AGG | 0.476336 | 1.4:-54014590 | MS.gene029887:CDS |
| TCTTTATGAACATGATTCCA+TGG | 0.476774 | 1.4:-54012034 | MS.gene029887:CDS |
| GGAGTCCCAAAGGATCTTAG+AGG | 0.478569 | 1.4:-54014430 | MS.gene029887:CDS |
| TCTCCCTGAATATCTTCCTT+AGG | 0.479753 | 1.4:+54014574 | None:intergenic |
| GAACTGGAGTTTCTTGTTCA+GGG | 0.481923 | 1.4:-54014454 | MS.gene029887:CDS |
| CAAGCATGACCCAGGGTCAC+TGG | 0.482780 | 1.4:-54011456 | MS.gene029887:CDS |
| TGCAAAGGAACTACACCATT+CGG | 0.490043 | 1.4:-54014773 | MS.gene029887:CDS |
| TAAGAATGTGCAGTTGGACT+TGG | 0.492915 | 1.4:-54011390 | MS.gene029887:CDS |
| AGAAACAGCTCTAATGGAAA+AGG | 0.495330 | 1.4:-54009267 | MS.gene029887:CDS |
| TACATGGTCAGGTCCTAATC+CGG | 0.496222 | 1.4:-54007826 | MS.gene029887:intron |
| CCACTTTGGCATCAATATTG+AGG | 0.496306 | 1.4:+54011330 | None:intergenic |
| TTGAGCTCTCGTGTCAAGAA+AGG | 0.498122 | 1.4:-54014679 | MS.gene029887:CDS |
| TTTCTTCTACCAGTGACCCT+GGG | 0.499737 | 1.4:+54011447 | None:intergenic |
| GCAGATTGAGCAGTTGGAGC+AGG | 0.500212 | 1.4:-54008033 | MS.gene029887:intron |
| GACATACCGCGAACTTTCCC+AGG | 0.500707 | 1.4:-54014050 | MS.gene029887:CDS |
| CCCCTCTGTTGGGTACTGTC+AGG | 0.501153 | 1.4:-54013958 | MS.gene029887:intron |
| CCAAATAGAGTTAACAAAGA+AGG | 0.502011 | 1.4:-54014925 | MS.gene029887:CDS |
| GGTCTTGCTCTGCTCTTCTG+CGG | 0.503407 | 1.4:+54007771 | None:intergenic |
| TGCACTAATGAGACACTAGA+TGG | 0.505018 | 1.4:-54014547 | MS.gene029887:CDS |
| CCTACCAGATGTCCATGAAC+AGG | 0.505495 | 1.4:-54011303 | MS.gene029887:intron |
| ATTGTGGAGGAAATTGAAAG+TGG | 0.506377 | 1.4:+54016110 | None:intergenic |
| AGAAGAAATGATAGAATCCC+AGG | 0.509368 | 1.4:-54012413 | MS.gene029887:intron |
| ACAAGAAGCTGCCATGCTGC+AGG | 0.510239 | 1.4:-54007970 | MS.gene029887:intron |
| CTCGACATAACCCCTCTGTT+GGG | 0.511757 | 1.4:-54013968 | MS.gene029887:CDS |
| ACCTGTATGATTCGAAATTG+TGG | 0.514634 | 1.4:+54016094 | None:intergenic |
| TCTAGATTACTTGGGAGTGC+AGG | 0.519245 | 1.4:-54012090 | MS.gene029887:CDS |
| CATCTCAGCAATTGATGCCA+TGG | 0.521481 | 1.4:+54006710 | None:intergenic |
| CAGTTCCTGCAATCTTGCCT+CGG | 0.524449 | 1.4:+54011583 | None:intergenic |
| ATCTGGTAGGGAATCCACTT+TGG | 0.526741 | 1.4:+54011316 | None:intergenic |
| GGTCCTAATCCGGCTAGAGC+AGG | 0.527048 | 1.4:-54007816 | MS.gene029887:CDS |
| ATCCTGGGAGGGCCAGTGAA+GGG | 0.527274 | 1.4:-54014849 | MS.gene029887:CDS |
| TAAAATGGCAGAAAGTATGT+TGG | 0.530158 | 1.4:-54006676 | MS.gene029887:CDS |
| CTTTATGAACATGATTCCAT+GGG | 0.540949 | 1.4:-54012033 | MS.gene029887:CDS |
| AACTAACAGTTGCGAAGGCA+AGG | 0.541203 | 1.4:-54014238 | MS.gene029887:CDS |
| TCCTGGGAGGGCCAGTGAAG+GGG | 0.541304 | 1.4:-54014848 | MS.gene029887:CDS |
| AGAAGAGGGAACTCCTCATA+GGG | 0.541906 | 1.4:-54015091 | MS.gene029887:CDS |
| AAGAATCAGAACCTGTAGAA+GGG | 0.543866 | 1.4:-54014600 | MS.gene029887:CDS |
| GCTCGACATAACCCCTCTGT+TGG | 0.545869 | 1.4:-54013969 | MS.gene029887:CDS |
| CTGATTCTTCTATAGATGGA+AGG | 0.546548 | 1.4:+54014614 | None:intergenic |
| TCCCCGTTACGTACCCTATG+AGG | 0.546954 | 1.4:+54015078 | None:intergenic |
| CGTCCAAAGCAGGGTGACCT+GGG | 0.547394 | 1.4:+54014033 | None:intergenic |
| AGAAACTCCAGTTCCTTCCA+TGG | 0.549481 | 1.4:+54014463 | None:intergenic |
| TACAAGCAGTAAGGACAAGC+TGG | 0.549735 | 1.4:+54011624 | None:intergenic |
| ATCGTCTGCAGTTGAGCGCA+AGG | 0.552982 | 1.4:-54009232 | MS.gene029887:CDS |
| TAAAAGAAGTTACTGATCCT+GGG | 0.553840 | 1.4:-54014864 | MS.gene029887:CDS |
| TATAGTTTCAAGCATGACCC+AGG | 0.554282 | 1.4:-54011464 | MS.gene029887:CDS |
| TATGCTATTTCGAACAGCGC+TGG | 0.554998 | 1.4:-54011863 | MS.gene029887:CDS |
| AACATGATTCCATGGGAAAG+TGG | 0.555280 | 1.4:-54012026 | MS.gene029887:intron |
| TCTTCAATGGCACTAAGAGA+TGG | 0.555356 | 1.4:+54014706 | None:intergenic |
| CTGTTCATGGACATCTGGTA+GGG | 0.557704 | 1.4:+54011304 | None:intergenic |
| AATGGCAGAAAGTATGTTGG+AGG | 0.558698 | 1.4:-54006673 | MS.gene029887:CDS |
| ATAGAAGAAAGGTCAAAGAA+AGG | 0.558990 | 1.4:-54011527 | MS.gene029887:CDS |
| GATCCTGGGAGGGCCAGTGA+AGG | 0.560349 | 1.4:-54014850 | MS.gene029887:CDS |
| GATCATGCAGATTGAGCAGT+TGG | 0.560886 | 1.4:-54008039 | MS.gene029887:intron |
| TGCTAGTAGTAAACGCCTCA+AGG | 0.560918 | 1.4:+54013995 | None:intergenic |
| CCTGTTCATGGACATCTGGT+AGG | 0.561806 | 1.4:+54011303 | None:intergenic |
| ACTTGGGAGTGCAGGTGGCA+TGG | 0.563275 | 1.4:-54012082 | MS.gene029887:CDS |
| CTTGGAGTGGCATTGTCACG+CGG | 0.563738 | 1.4:+54005168 | None:intergenic |
| CCTCAATATTGATGCCAAAG+TGG | 0.565085 | 1.4:-54011330 | MS.gene029887:CDS |
| ATTGGAAGTTCACATGCTCC+AGG | 0.566177 | 1.4:-54007735 | MS.gene029887:intron |
| TAAGGAAGATATTCAGGGAG+AGG | 0.568280 | 1.4:-54014572 | MS.gene029887:CDS |
| CGGGGATGATTCAAGTAGCA+AGG | 0.569254 | 1.4:-54015061 | MS.gene029887:CDS |
| AGAAAAGATCTGCCATACTC+AGG | 0.572795 | 1.4:-54009858 | MS.gene029887:intron |
| TTAGTTACAACAACAGATGC+AGG | 0.574166 | 1.4:-54011698 | MS.gene029887:CDS |
| ATCTTGCCTCGGTCACAGCT+AGG | 0.574382 | 1.4:+54011594 | None:intergenic |
| TGTTGAAAATCCTCCACGCA+AGG | 0.576593 | 1.4:-54005779 | MS.gene029887:CDS |
| GATTGAGCAGTTGGAGCAGG+AGG | 0.577057 | 1.4:-54008030 | MS.gene029887:CDS |
| AGCTGATAAGAATGTGCAGT+TGG | 0.578288 | 1.4:-54011396 | MS.gene029887:CDS |
| GTATAACTCAGGACATTCGT+TGG | 0.580032 | 1.4:-54012469 | MS.gene029887:intron |
| CTTCCAATTTCTGAGCTGCA+AGG | 0.580039 | 1.4:+54007750 | None:intergenic |
| TCTGTTGTTGTAACTAATGC+AGG | 0.580339 | 1.4:+54011704 | None:intergenic |
| GTTAATCATCTAGATTACTT+GGG | 0.581715 | 1.4:-54012098 | MS.gene029887:CDS |
| GCTCCTAAGGAAGATATTCA+GGG | 0.582697 | 1.4:-54014577 | MS.gene029887:CDS |
| ATTGACCAGATTCATACTGA+AGG | 0.583115 | 1.4:+54006646 | None:intergenic |
| CTAAAGCATTATCTTCTCCA+AGG | 0.584228 | 1.4:-54006623 | MS.gene029887:intron |
| GGTAACCCATACAAGCAGTA+AGG | 0.586072 | 1.4:+54011615 | None:intergenic |
| GGGTGACCTGGGAAAGTTCG+CGG | 0.586499 | 1.4:+54014044 | None:intergenic |
| ACCTGACAGTACCCAACAGA+GGG | 0.587069 | 1.4:+54013957 | None:intergenic |
| TAGATGGTGGTAACAGCCCA+AGG | 0.587236 | 1.4:-54014531 | MS.gene029887:CDS |
| AGTAGCGAGGTAAAAGAAGA+GGG | 0.587418 | 1.4:-54015105 | MS.gene029887:CDS |
| TACAGCAAATAATTCTGCAA+AGG | 0.587567 | 1.4:-54014788 | MS.gene029887:CDS |
| AGATTACTTGGGAGTGCAGG+TGG | 0.589590 | 1.4:-54012087 | MS.gene029887:CDS |
| TTGACCAGATTCATACTGAA+GGG | 0.593499 | 1.4:+54006647 | None:intergenic |
| CAAGAAACTAACAGTTGCGA+AGG | 0.600202 | 1.4:-54014243 | MS.gene029887:CDS |
| AAGTAGCGAGGTAAAAGAAG+AGG | 0.600562 | 1.4:-54015106 | MS.gene029887:CDS |
| CCCAAAGGATCTTAGAGGAG+AGG | 0.605081 | 1.4:-54014425 | MS.gene029887:intron |
| ATAAAGATTGATAGAAACCA+TGG | 0.606123 | 1.4:+54012050 | None:intergenic |
| AGCTCTAATGGAAAAGGTGA+AGG | 0.608776 | 1.4:-54009261 | MS.gene029887:CDS |
| GGTTTCTTCCGACAGTCCAA+AGG | 0.608808 | 1.4:-54015040 | MS.gene029887:CDS |
| TCGTGTGTTCACACCTACAA+AGG | 0.609319 | 1.4:+54014299 | None:intergenic |
| AGAAGTTACTGATCCTGGGA+GGG | 0.613294 | 1.4:-54014860 | MS.gene029887:CDS |
| AATGCAGACATAATTAGTGA+AGG | 0.613496 | 1.4:-54015006 | MS.gene029887:CDS |
| TATGCAGGAAAAGTATGAGA+AGG | 0.613713 | 1.4:-54006733 | MS.gene029887:intron |
| TCCTCATAGGGTACGTAACG+GGG | 0.615263 | 1.4:-54015079 | MS.gene029887:CDS |
| AGAGTATTCCTTAATCTACA+AGG | 0.616845 | 1.4:-54015492 | MS.gene029887:intron |
| GTTGAAAATCCTCCACGCAA+GGG | 0.619020 | 1.4:-54005778 | MS.gene029887:CDS |
| GGGTTACCTAGCTGTGACCG+AGG | 0.620962 | 1.4:-54011600 | MS.gene029887:CDS |
| TGTAGGTGTGAACACACGAC+GGG | 0.624136 | 1.4:-54014295 | MS.gene029887:CDS |
| AGAATCAGAACCTGTAGAAG+GGG | 0.629859 | 1.4:-54014599 | MS.gene029887:CDS |
| CTGGAGTTTCTTGTTCAGGG+AGG | 0.633518 | 1.4:-54014451 | MS.gene029887:CDS |
| TGTTCAGGGAGGAGTCCCAA+AGG | 0.636381 | 1.4:-54014440 | MS.gene029887:CDS |
| CTGTTCGAAATAGCATAACA+CGG | 0.636645 | 1.4:+54011869 | None:intergenic |
| TGCACATAGAACCTGCAGCA+TGG | 0.640917 | 1.4:+54007959 | None:intergenic |
| TCTATAATATCTAAAACAGA+CGG | 0.643315 | 1.4:+54011545 | None:intergenic |
| GGAAAAGTATGAGAAGGCCA+TGG | 0.644566 | 1.4:-54006727 | MS.gene029887:CDS |
| ATGTTCTATCTGCTGCAGCA+GGG | 0.649404 | 1.4:-54014209 | MS.gene029887:CDS |
| AGGTGTGAACACACGACGGG+TGG | 0.649560 | 1.4:-54014292 | MS.gene029887:CDS |
| CTTAGAAGACCCTTGCGTGG+AGG | 0.650170 | 1.4:+54005769 | None:intergenic |
| ATGGAGAAAGCAGATTGAGA+AGG | 0.650978 | 1.4:-54014184 | MS.gene029887:intron |
| TCGTCTGCAGTTGAGCGCAA+GGG | 0.651354 | 1.4:-54009231 | MS.gene029887:intron |
| AGGCAAGATTGCAGGAACTG+AGG | 0.652313 | 1.4:-54011580 | MS.gene029887:CDS |
| TCATATCTTGAACAGAGCCG+AGG | 0.653362 | 1.4:-54009294 | MS.gene029887:intron |
| TGAGCTATGCAGATTGCTGG+AGG | 0.658548 | 1.4:-54009881 | MS.gene029887:CDS |
| TAATATCTAAAACAGACGGT+CGG | 0.666423 | 1.4:+54011549 | None:intergenic |
| GGAAGAAAGAAAGACCCGTA+AGG | 0.666823 | 1.4:-54014752 | MS.gene029887:CDS |
| AAACTTAGAAGACCCTTGCG+TGG | 0.668741 | 1.4:+54005766 | None:intergenic |
| ATTCTTCTATAGATGGAAGG+TGG | 0.669300 | 1.4:+54014617 | None:intergenic |
| TGTATGATTCGAAATTGTGG+AGG | 0.670349 | 1.4:+54016097 | None:intergenic |
| ATAGTTTCAAGCATGACCCA+GGG | 0.673596 | 1.4:-54011463 | MS.gene029887:CDS |
| ATTGAAAGCTGAAAGTAGCG+AGG | 0.682041 | 1.4:-54015118 | MS.gene029887:CDS |
| ACTCCTCATAGGGTACGTAA+CGG | 0.688029 | 1.4:-54015081 | MS.gene029887:CDS |
| AAGAAGTTACTGATCCTGGG+AGG | 0.692089 | 1.4:-54014861 | MS.gene029887:CDS |
| AGATGGTGGTAACAGCCCAA+GGG | 0.696356 | 1.4:-54014530 | MS.gene029887:CDS |
| TGGCATGGATATCTGCACCA+TGG | 0.701471 | 1.4:-54012067 | MS.gene029887:CDS |
| TACCTGACAGTACCCAACAG+AGG | 0.706079 | 1.4:+54013956 | None:intergenic |
| ACTAATGAGACACTAGATGG+TGG | 0.708991 | 1.4:-54014544 | MS.gene029887:CDS |
| TGGTTGGCGTGATAGATACA+GGG | 0.712411 | 1.4:-54005737 | MS.gene029887:intron |
| TTGTAGGTGTGAACACACGA+CGG | 0.712835 | 1.4:-54014296 | MS.gene029887:CDS |
| AAAATGGCAGAAATTCCTTG+AGG | 0.726393 | 1.4:-54014010 | MS.gene029887:CDS |
| AGACCCGTAAGGTTCAACGC+TGG | 0.736163 | 1.4:-54014741 | MS.gene029887:CDS |
| ACAGGGAAAACCTAACACTG+AGG | 0.763133 | 1.4:-54005205 | MS.gene029887:intron |
| CCTGACAGTACCCAACAGAG+GGG | 0.792308 | 1.4:+54013958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 54005134 | 54016142 | 54005134 | ID=MS.gene029887 |
| chr1.4 | mRNA | 54005134 | 54016142 | 54005134 | ID=MS.gene029887.t1;Parent=MS.gene029887 |
| chr1.4 | exon | 54016096 | 54016142 | 54016096 | ID=MS.gene029887.t1.exon1;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54016096 | 54016142 | 54016096 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54015493 | 54015562 | 54015493 | ID=MS.gene029887.t1.exon2;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54015493 | 54015562 | 54015493 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54014426 | 54015238 | 54014426 | ID=MS.gene029887.t1.exon3;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54014426 | 54015238 | 54014426 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54014185 | 54014331 | 54014185 | ID=MS.gene029887.t1.exon4;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54014185 | 54014331 | 54014185 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54013959 | 54014072 | 54013959 | ID=MS.gene029887.t1.exon5;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54013959 | 54014072 | 54013959 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54013116 | 54013174 | 54013116 | ID=MS.gene029887.t1.exon6;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54013116 | 54013174 | 54013116 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54012414 | 54012480 | 54012414 | ID=MS.gene029887.t1.exon7;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54012414 | 54012480 | 54012414 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54012220 | 54012271 | 54012220 | ID=MS.gene029887.t1.exon8;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54012220 | 54012271 | 54012220 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54012027 | 54012119 | 54012027 | ID=MS.gene029887.t1.exon9;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54012027 | 54012119 | 54012027 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54011845 | 54011928 | 54011845 | ID=MS.gene029887.t1.exon10;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54011845 | 54011928 | 54011845 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54011304 | 54011728 | 54011304 | ID=MS.gene029887.t1.exon11;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54011304 | 54011728 | 54011304 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54009859 | 54009920 | 54009859 | ID=MS.gene029887.t1.exon12;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54009859 | 54009920 | 54009859 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54009232 | 54009301 | 54009232 | ID=MS.gene029887.t1.exon13;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54009232 | 54009301 | 54009232 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54007971 | 54008051 | 54007971 | ID=MS.gene029887.t1.exon14;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54007971 | 54008051 | 54007971 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54007736 | 54007837 | 54007736 | ID=MS.gene029887.t1.exon15;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54007736 | 54007837 | 54007736 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54006624 | 54006748 | 54006624 | ID=MS.gene029887.t1.exon16;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54006624 | 54006748 | 54006624 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54005738 | 54005810 | 54005738 | ID=MS.gene029887.t1.exon17;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54005738 | 54005810 | 54005738 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| chr1.4 | exon | 54005134 | 54005223 | 54005134 | ID=MS.gene029887.t1.exon18;Parent=MS.gene029887.t1 |
| chr1.4 | CDS | 54005134 | 54005223 | 54005134 | ID=cds.MS.gene029887.t1;Parent=MS.gene029887.t1 |
| Gene Sequence |
| Protein sequence |
