Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029411.t1 | RHN82421.1 | 95.1 | 384 | 15 | 2 | 1 | 384 | 1 | 380 | 3.10E-208 | 734.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029411.t1 | Q9C942 | 35.1 | 288 | 184 | 3 | 93 | 379 | 36 | 321 | 1.4e-44 | 181.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029411.t1 | A0A396K0S6 | 95.1 | 384 | 15 | 2 | 1 | 384 | 1 | 380 | 2.3e-208 | 734.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene022183 | MS.gene029411 | PPI |
| MS.gene042920 | MS.gene029411 | PPI |
| MS.gene93966 | MS.gene029411 | PPI |
| MS.gene029411 | MS.gene72606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029411.t1 | MTR_1g110670 | 88.802 | 384 | 19 | 3 | 1 | 384 | 1 | 360 | 0.0 | 689 |
| MS.gene029411.t1 | MTR_5g056550 | 68.101 | 395 | 112 | 4 | 1 | 383 | 1 | 393 | 0.0 | 568 |
| MS.gene029411.t1 | MTR_5g056550 | 62.785 | 395 | 100 | 5 | 1 | 383 | 1 | 360 | 0.0 | 508 |
| MS.gene029411.t1 | MTR_7g007260 | 58.610 | 331 | 136 | 1 | 49 | 379 | 7 | 336 | 8.20e-144 | 412 |
| MS.gene029411.t1 | MTR_6g018490 | 56.798 | 331 | 142 | 1 | 49 | 379 | 6 | 335 | 1.15e-141 | 406 |
| MS.gene029411.t1 | MTR_6g084420 | 54.192 | 334 | 151 | 2 | 47 | 379 | 4 | 336 | 6.69e-134 | 387 |
| MS.gene029411.t1 | MTR_7g007260 | 55.891 | 331 | 132 | 2 | 49 | 379 | 7 | 323 | 1.27e-131 | 380 |
| MS.gene029411.t1 | MTR_7g007260 | 56.024 | 332 | 131 | 3 | 49 | 379 | 7 | 324 | 9.71e-131 | 378 |
| MS.gene029411.t1 | MTR_6g025610 | 60.490 | 286 | 112 | 1 | 94 | 379 | 41 | 325 | 6.27e-128 | 371 |
| MS.gene029411.t1 | MTR_5g056550 | 63.710 | 248 | 76 | 4 | 1 | 236 | 1 | 246 | 2.55e-115 | 337 |
| MS.gene029411.t1 | MTR_5g056550 | 63.563 | 247 | 76 | 4 | 1 | 235 | 1 | 245 | 1.83e-114 | 334 |
| MS.gene029411.t1 | MTR_1g088470 | 45.965 | 285 | 153 | 1 | 97 | 381 | 8 | 291 | 2.00e-88 | 270 |
| MS.gene029411.t1 | MTR_7g108770 | 43.463 | 283 | 158 | 1 | 97 | 379 | 8 | 288 | 4.54e-86 | 265 |
| MS.gene029411.t1 | MTR_1g115535 | 41.751 | 297 | 172 | 1 | 86 | 382 | 3 | 298 | 5.22e-83 | 256 |
| MS.gene029411.t1 | MTR_1g115535 | 42.907 | 289 | 164 | 1 | 94 | 382 | 7 | 294 | 7.91e-83 | 256 |
| MS.gene029411.t1 | MTR_4g089170 | 38.851 | 296 | 170 | 1 | 98 | 382 | 29 | 324 | 1.52e-71 | 227 |
| MS.gene029411.t1 | MTR_1g095110 | 34.983 | 303 | 181 | 6 | 90 | 378 | 12 | 312 | 1.44e-55 | 186 |
| MS.gene029411.t1 | MTR_4g127220 | 37.050 | 278 | 173 | 2 | 108 | 384 | 41 | 317 | 6.84e-55 | 184 |
| MS.gene029411.t1 | MTR_1g110680 | 66.667 | 108 | 32 | 1 | 277 | 384 | 4 | 107 | 2.98e-40 | 138 |
| MS.gene029411.t1 | MTR_6g071475 | 35.417 | 288 | 176 | 8 | 95 | 381 | 112 | 390 | 8.52e-38 | 140 |
| MS.gene029411.t1 | MTR_3g109870 | 32.384 | 281 | 157 | 9 | 105 | 381 | 103 | 354 | 1.29e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029411.t1 | AT1G77420 | 65.015 | 343 | 120 | 0 | 39 | 381 | 36 | 378 | 2.62e-168 | 476 |
| MS.gene029411.t1 | AT5G16120 | 58.359 | 329 | 136 | 1 | 51 | 379 | 10 | 337 | 1.95e-141 | 406 |
| MS.gene029411.t1 | AT5G16120 | 58.359 | 329 | 136 | 1 | 51 | 379 | 10 | 337 | 1.95e-141 | 406 |
| MS.gene029411.t1 | AT5G16120 | 58.359 | 329 | 136 | 1 | 51 | 379 | 28 | 355 | 3.08e-141 | 406 |
| MS.gene029411.t1 | AT5G16120 | 58.359 | 329 | 136 | 1 | 51 | 379 | 42 | 369 | 4.66e-141 | 406 |
| MS.gene029411.t1 | AT3G62860 | 41.404 | 285 | 165 | 1 | 97 | 381 | 9 | 291 | 4.81e-84 | 260 |
| MS.gene029411.t1 | AT2G39420 | 43.793 | 290 | 162 | 1 | 94 | 383 | 8 | 296 | 1.60e-83 | 257 |
| MS.gene029411.t1 | AT2G47630 | 42.807 | 285 | 163 | 0 | 97 | 381 | 9 | 293 | 3.07e-83 | 258 |
| MS.gene029411.t1 | AT2G39410 | 45.139 | 288 | 157 | 1 | 94 | 381 | 8 | 294 | 5.15e-83 | 256 |
| MS.gene029411.t1 | AT1G11090 | 43.448 | 290 | 164 | 0 | 93 | 382 | 26 | 315 | 9.66e-81 | 250 |
| MS.gene029411.t1 | AT3G55180 | 42.759 | 290 | 166 | 0 | 94 | 383 | 2 | 291 | 2.89e-79 | 246 |
| MS.gene029411.t1 | AT2G39400 | 41.379 | 290 | 169 | 1 | 94 | 383 | 2 | 290 | 3.35e-76 | 238 |
| MS.gene029411.t1 | AT3G62860 | 41.870 | 246 | 143 | 0 | 136 | 381 | 3 | 248 | 2.30e-72 | 228 |
| MS.gene029411.t1 | AT2G47630 | 43.830 | 235 | 132 | 0 | 147 | 381 | 14 | 248 | 1.05e-68 | 219 |
| MS.gene029411.t1 | AT2G47630 | 43.460 | 237 | 134 | 0 | 147 | 383 | 34 | 270 | 1.62e-68 | 219 |
| MS.gene029411.t1 | AT3G55190 | 38.328 | 287 | 175 | 2 | 98 | 383 | 12 | 297 | 1.24e-65 | 211 |
| MS.gene029411.t1 | AT5G14980 | 34.982 | 283 | 181 | 3 | 100 | 381 | 35 | 315 | 5.82e-59 | 194 |
| MS.gene029411.t1 | AT5G19290 | 34.982 | 283 | 182 | 2 | 103 | 384 | 38 | 319 | 3.01e-56 | 187 |
| MS.gene029411.t1 | AT1G52760 | 34.828 | 290 | 181 | 3 | 102 | 384 | 38 | 326 | 4.10e-54 | 182 |
| MS.gene029411.t1 | AT2G39400 | 38.914 | 221 | 134 | 1 | 94 | 314 | 2 | 221 | 2.97e-50 | 169 |
| MS.gene029411.t1 | AT5G11650 | 34.769 | 325 | 187 | 10 | 65 | 378 | 65 | 375 | 3.03e-42 | 152 |
| MS.gene029411.t1 | AT1G73480 | 34.507 | 284 | 166 | 9 | 105 | 382 | 194 | 463 | 8.40e-40 | 147 |
| MS.gene029411.t1 | AT1G18360 | 34.520 | 281 | 171 | 6 | 105 | 382 | 112 | 382 | 1.69e-38 | 142 |
| MS.gene029411.t1 | AT5G11650 | 32.114 | 246 | 141 | 9 | 65 | 297 | 65 | 297 | 2.22e-21 | 94.0 |
| MS.gene029411.t1 | AT2G39410 | 41.935 | 93 | 53 | 1 | 97 | 189 | 11 | 102 | 9.71e-21 | 87.4 |
Find 81 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCATTATTGATACTTCA+TGG | 0.274482 | 1.4:+84396070 | MS.gene029411:CDS |
| AGGAGGTTACCATGGCATTT+TGG | 0.302834 | 1.4:+84396180 | MS.gene029411:CDS |
| TTGCATTCACTCTCAGTCTC+AGG | 0.316151 | 1.4:-84393635 | None:intergenic |
| ACTTGCACTTTCTTCTTTGA+AGG | 0.335129 | 1.4:+84394471 | MS.gene029411:CDS |
| TTGATTGGAACGCCATGTTC+TGG | 0.338027 | 1.4:-84394414 | None:intergenic |
| ACCATGAGATGATGTCATTA+TGG | 0.339733 | 1.4:-84396234 | None:intergenic |
| GCAATGGATTTCCCAGGTTT+CGG | 0.351323 | 1.4:+84394605 | MS.gene029411:CDS |
| GCTCCATGAAGTATCAATAA+TGG | 0.356305 | 1.4:-84396073 | None:intergenic |
| ATTTATATTCGGACAGTCAA+TGG | 0.361185 | 1.4:+84395118 | MS.gene029411:CDS |
| TAAAGAAACTGGCTCACTAA+TGG | 0.370262 | 1.4:-84396115 | None:intergenic |
| AGAACCCGGCAAGAGAAAAT+TGG | 0.374826 | 1.4:+84395742 | MS.gene029411:CDS |
| ATGCTTTCTCATAAAGAAAC+TGG | 0.376112 | 1.4:-84396126 | None:intergenic |
| GATTTGCCGCAATTTATATT+CGG | 0.378150 | 1.4:+84395107 | MS.gene029411:CDS |
| TGCTCTTAAAGCTCATTTGA+AGG | 0.379148 | 1.4:+84395151 | MS.gene029411:CDS |
| TCATCTCATGGTTAGACATT+AGG | 0.392634 | 1.4:+84396245 | MS.gene029411:CDS |
| ATGACAACGACACTCCGATT+TGG | 0.395939 | 1.4:+84393546 | MS.gene029411:CDS |
| TGATATTGGATTATGGTGTA+AGG | 0.399930 | 1.4:-84393592 | None:intergenic |
| ACAGAAGAAATTCTTTCATC+AGG | 0.403357 | 1.4:-84396211 | None:intergenic |
| ATGACTCCGTCCCAATCATT+TGG | 0.412702 | 1.4:-84395176 | None:intergenic |
| ATTTGAAGGAACCAAATGAT+TGG | 0.414265 | 1.4:+84395165 | MS.gene029411:CDS |
| GATTATGGTGTAAGGGTAAA+GGG | 0.427866 | 1.4:-84393584 | None:intergenic |
| TGAAAGGAATTCAAGGGGAT+TGG | 0.438456 | 1.4:+84394368 | MS.gene029411:CDS |
| AACACCTTCAAAATTGTAGT+TGG | 0.442279 | 1.4:-84395647 | None:intergenic |
| GGTGTAAGGGTAAAGGGAAA+TGG | 0.442389 | 1.4:-84393578 | None:intergenic |
| ACTTGATCATATCTTATTCA+AGG | 0.446112 | 1.4:+84393776 | MS.gene029411:CDS |
| TGCATTCACTCTCAGTCTCA+GGG | 0.454337 | 1.4:-84393634 | None:intergenic |
| GAACATGGCGTTCCAATCAA+AGG | 0.465267 | 1.4:+84394417 | MS.gene029411:CDS |
| AACATGGCGTTCCAATCAAA+GGG | 0.467021 | 1.4:+84394418 | MS.gene029411:CDS |
| CCTTCAGATAAACCGAAACC+TGG | 0.470797 | 1.4:-84394617 | None:intergenic |
| TTTGAAGGAACCAAATGATT+GGG | 0.476356 | 1.4:+84395166 | MS.gene029411:CDS |
| CCAGGTTTCGGTTTATCTGA+AGG | 0.476945 | 1.4:+84394617 | MS.gene029411:CDS |
| CCTTGTAGCTCCAATGTGTA+AGG | 0.478506 | 1.4:+84395199 | MS.gene029411:CDS |
| GATCAAACACGATTAAGAAC+TGG | 0.479472 | 1.4:+84395887 | MS.gene029411:CDS |
| GGATTATGGTGTAAGGGTAA+AGG | 0.480388 | 1.4:-84393585 | None:intergenic |
| CTCATCGCTGATACCTTCAA+TGG | 0.484364 | 1.4:-84393670 | None:intergenic |
| CTATAATAGACTGCACCTGC+TGG | 0.486422 | 1.4:+84393902 | MS.gene029411:intron |
| ATCAAGGTTAAGAGAAGCTA+TGG | 0.486484 | 1.4:-84393700 | None:intergenic |
| TGCGGCAAATCCCTCACCTC+TGG | 0.492405 | 1.4:-84395095 | None:intergenic |
| AGTTCAGATAGATCCTTGTA+TGG | 0.502102 | 1.4:-84395710 | None:intergenic |
| TTGGTTATCAGTGGTATGAA+AGG | 0.504463 | 1.4:+84394352 | MS.gene029411:intron |
| TTTATATTCGGACAGTCAAT+GGG | 0.504492 | 1.4:+84395119 | MS.gene029411:CDS |
| GGTTTATCTGAAGGATTACA+TGG | 0.507433 | 1.4:+84394626 | MS.gene029411:CDS |
| GATATTGGATTATGGTGTAA+GGG | 0.515166 | 1.4:-84393591 | None:intergenic |
| ACCTTCAAAATTGTAGTTGG+CGG | 0.515776 | 1.4:-84395644 | None:intergenic |
| GTTTATGCAATGGATTTCCC+AGG | 0.516962 | 1.4:+84394599 | MS.gene029411:CDS |
| TACGAGAAGGTGCATGATCA+AGG | 0.526915 | 1.4:-84393716 | None:intergenic |
| TGGATTTGGTGTTTATGCAA+TGG | 0.528835 | 1.4:+84394589 | MS.gene029411:CDS |
| CCTTACACATTGGAGCTACA+AGG | 0.538468 | 1.4:-84395199 | None:intergenic |
| TCTTGAGTTATGATCCCAGC+AGG | 0.541950 | 1.4:-84393917 | None:intergenic |
| AGTGGTATGAAAGGAATTCA+AGG | 0.543776 | 1.4:+84394361 | MS.gene029411:intron |
| TCGACTAAATCATCAAAACT+TGG | 0.545949 | 1.4:-84394656 | None:intergenic |
| ACTTCATGGAGCAGAAGATA+AGG | 0.548587 | 1.4:+84396084 | MS.gene029411:CDS |
| GACAGCTAGACCAGAGGTGA+GGG | 0.549583 | 1.4:+84395085 | MS.gene029411:intron |
| GGCAAAACTATTTCCATACA+AGG | 0.558367 | 1.4:+84395697 | MS.gene029411:CDS |
| ATAATTGTTCAGGTATTGCA+AGG | 0.560443 | 1.4:+84394552 | MS.gene029411:intron |
| AAGACACTAAAGATCTATGA+AGG | 0.565411 | 1.4:+84396160 | MS.gene029411:CDS |
| AACACGATTAAGAACTGGCA+TGG | 0.566445 | 1.4:+84395892 | MS.gene029411:CDS |
| TCAAGATATTGAGTCACAGT+TGG | 0.570097 | 1.4:+84395931 | MS.gene029411:CDS |
| GTGGTATGAAAGGAATTCAA+GGG | 0.572692 | 1.4:+84394362 | MS.gene029411:intron |
| TATAATAGACTGCACCTGCT+GGG | 0.586633 | 1.4:+84393903 | MS.gene029411:intron |
| TATTGAGTCACAGTTGGAGA+AGG | 0.587825 | 1.4:+84395937 | MS.gene029411:CDS |
| ATCTATGAAGGAGGTTACCA+TGG | 0.587933 | 1.4:+84396172 | MS.gene029411:CDS |
| CTTGTCTAAAATGATGCCAA+AGG | 0.592063 | 1.4:+84395676 | MS.gene029411:CDS |
| TTGATTGCCAAGATATCAGA+AGG | 0.596025 | 1.4:+84395614 | MS.gene029411:intron |
| TCCATAATGACATCATCTCA+TGG | 0.596292 | 1.4:+84396233 | MS.gene029411:CDS |
| AAAAGCTGGATGCCAGAACA+TGG | 0.599820 | 1.4:+84394402 | MS.gene029411:CDS |
| CTGTGACTCAATATCTTGAG+TGG | 0.612313 | 1.4:-84395927 | None:intergenic |
| AAGGAACCAAATGATTGGGA+CGG | 0.614530 | 1.4:+84395170 | MS.gene029411:CDS |
| GACTGTCCGAATATAAATTG+CGG | 0.618570 | 1.4:-84395113 | None:intergenic |
| CTTCAGATAAACCGAAACCT+GGG | 0.619450 | 1.4:-84394616 | None:intergenic |
| CGTTGTCATAGATAGCTCCA+TGG | 0.621711 | 1.4:-84393532 | None:intergenic |
| ATATTCGGACAGTCAATGGG+TGG | 0.631708 | 1.4:+84395122 | MS.gene029411:CDS |
| TGACAGCTAGACCAGAGGTG+AGG | 0.639641 | 1.4:+84395084 | MS.gene029411:intron |
| AATGGACATACCTTACACAT+TGG | 0.639810 | 1.4:-84395209 | None:intergenic |
| GTTCACCTTCCAAAATGCCA+TGG | 0.645530 | 1.4:-84396189 | None:intergenic |
| TGTCGAACATGTCTACGAGA+AGG | 0.657476 | 1.4:-84393729 | None:intergenic |
| TTGCTGATGCACATGAGTGA+AGG | 0.663071 | 1.4:-84393754 | None:intergenic |
| TGGTATGAAAGGAATTCAAG+GGG | 0.670152 | 1.4:+84394363 | MS.gene029411:CDS |
| TACATTGACAGCTAGACCAG+AGG | 0.671347 | 1.4:+84395079 | MS.gene029411:intron |
| ACACTAAAGATCTATGAAGG+AGG | 0.678648 | 1.4:+84396163 | MS.gene029411:CDS |
| ACATGGCGTTCCAATCAAAG+GGG | 0.730927 | 1.4:+84394419 | MS.gene029411:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAGCTATAGTAT+AGG | - | chr1.4:84396013-84396032 | None:intergenic | 15.0% |
| !!! | AAATGAAGATTAGTTTAAAA+AGG | + | chr1.4:84394822-84394841 | MS.gene029411:intron | 15.0% |
| !! | AATCCAAGATCAATTTATAT+GGG | + | chr1.4:84395504-84395523 | MS.gene029411:intron | 20.0% |
| !! | GAATTCCATACAAAAATTAA+AGG | + | chr1.4:84394689-84394708 | MS.gene029411:CDS | 20.0% |
| !! | TAATCCAAGATCAATTTATA+TGG | + | chr1.4:84395503-84395522 | MS.gene029411:intron | 20.0% |
| !! | TCATTGTCATATATAATTTC+AGG | + | chr1.4:84396042-84396061 | MS.gene029411:intron | 20.0% |
| !!! | AGTTTTTTGATATTGGATTA+TGG | - | chr1.4:84393602-84393621 | None:intergenic | 20.0% |
| !!! | ATTGATTTGAATAATTGTTC+AGG | + | chr1.4:84394542-84394561 | MS.gene029411:intron | 20.0% |
| !!! | TCATACCTTTAATTTTTGTA+TGG | - | chr1.4:84394697-84394716 | None:intergenic | 20.0% |
| !!! | TGATGTCTATACATTAATTT+TGG | + | chr1.4:84394333-84394352 | MS.gene029411:intron | 20.0% |
| !!! | TTTGTAGAGTTTTTTGATAT+TGG | - | chr1.4:84393609-84393628 | None:intergenic | 20.0% |
| ! | AAGCACTTATTAGACTATTT+GGG | - | chr1.4:84394245-84394264 | None:intergenic | 25.0% |
| ! | ACTTGATCATATCTTATTCA+AGG | + | chr1.4:84393776-84393795 | MS.gene029411:CDS | 25.0% |
| ! | ATAACACATTTCACAGTTTA+GGG | - | chr1.4:84394305-84394324 | None:intergenic | 25.0% |
| ! | ATCACGATTGCTAAAATAAA+AGG | - | chr1.4:84394720-84394739 | None:intergenic | 25.0% |
| ! | ATGATGTGTAAAAAACTACA+AGG | + | chr1.4:84394789-84394808 | MS.gene029411:intron | 25.0% |
| ! | CTTATGAAAACATCTTACTT+AGG | - | chr1.4:84394218-84394237 | None:intergenic | 25.0% |
| ! | CTTTGCTTAAAAATCAATGA+TGG | - | chr1.4:84394879-84394898 | None:intergenic | 25.0% |
| ! | GAACAAATGCATAGTTAATT+TGG | - | chr1.4:84395828-84395847 | None:intergenic | 25.0% |
| ! | GATCAATTTATATGGGAAAA+TGG | + | chr1.4:84395511-84395530 | MS.gene029411:intron | 25.0% |
| ! | TAAGCACTTATTAGACTATT+TGG | - | chr1.4:84394246-84394265 | None:intergenic | 25.0% |
| ! | TGTAATTTCTTTGACATCTA+AGG | + | chr1.4:84395315-84395334 | MS.gene029411:intron | 25.0% |
| ! | TTCAAATAAGTCGATCTAAA+GGG | - | chr1.4:84394074-84394093 | None:intergenic | 25.0% |
| ! | TTTCCCATATAAATTGATCT+TGG | - | chr1.4:84395510-84395529 | None:intergenic | 25.0% |
| !! | ACTATCTATCATTTGTTGAA+TGG | + | chr1.4:84395535-84395554 | MS.gene029411:intron | 25.0% |
| !! | GATTATTTCCAATATCGATT+TGG | - | chr1.4:84395488-84395507 | None:intergenic | 25.0% |
| !! | GCATTTGTTCTTTCTTTTAT+AGG | + | chr1.4:84395838-84395857 | MS.gene029411:intron | 25.0% |
| !! | TATGAAATGAAAAAAGTGTG+AGG | - | chr1.4:84393821-84393840 | None:intergenic | 25.0% |
| !! | TTTCTTTGTTTGTGTTTCAT+TGG | + | chr1.4:84393868-84393887 | MS.gene029411:intron | 25.0% |
| !!! | ACATTAATTTTGGTTATCAG+TGG | + | chr1.4:84394343-84394362 | MS.gene029411:intron | 25.0% |
| !!! | CATCATTGATTTTTAAGCAA+AGG | + | chr1.4:84394877-84394896 | MS.gene029411:intron | 25.0% |
| !!! | GAAGATTAGTTTAAAAAGGA+TGG | + | chr1.4:84394826-84394845 | MS.gene029411:intron | 25.0% |
| !!! | TTGGTTGGTAATTTAATTTG+TGG | + | chr1.4:84395761-84395780 | MS.gene029411:intron | 25.0% |
| AACACCTTCAAAATTGTAGT+TGG | - | chr1.4:84395650-84395669 | None:intergenic | 30.0% | |
| AAGAAAAAGTCAACCATTGA+AGG | + | chr1.4:84393657-84393676 | MS.gene029411:CDS | 30.0% | |
| AAGACACTAAAGATCTATGA+AGG | + | chr1.4:84396160-84396179 | MS.gene029411:CDS | 30.0% | |
| ACAGAAGAAATTCTTTCATC+AGG | - | chr1.4:84396214-84396233 | None:intergenic | 30.0% | |
| AGAGTTATCAAATTTGAGGA+TGG | + | chr1.4:84394516-84394535 | MS.gene029411:intron | 30.0% | |
| ATGCTTTCTCATAAAGAAAC+TGG | - | chr1.4:84396129-84396148 | None:intergenic | 30.0% | |
| ATTTATATTCGGACAGTCAA+TGG | + | chr1.4:84395118-84395137 | MS.gene029411:CDS | 30.0% | |
| ATTTGAAGGAACCAAATGAT+TGG | + | chr1.4:84395165-84395184 | MS.gene029411:CDS | 30.0% | |
| CATAACACATTTCACAGTTT+AGG | - | chr1.4:84394306-84394325 | None:intergenic | 30.0% | |
| CTAGAGAGTTATCAAATTTG+AGG | + | chr1.4:84394512-84394531 | MS.gene029411:intron | 30.0% | |
| GATATTGGATTATGGTGTAA+GGG | - | chr1.4:84393594-84393613 | None:intergenic | 30.0% | |
| GATTTGCCGCAATTTATATT+CGG | + | chr1.4:84395107-84395126 | MS.gene029411:CDS | 30.0% | |
| GTTCAAATAAGTCGATCTAA+AGG | - | chr1.4:84394075-84394094 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAAGAATAC+TGG | - | chr1.4:84395380-84395399 | None:intergenic | 30.0% | |
| TCGACTAAATCATCAAAACT+TGG | - | chr1.4:84394659-84394678 | None:intergenic | 30.0% | |
| TGATATTGGATTATGGTGTA+AGG | - | chr1.4:84393595-84393614 | None:intergenic | 30.0% | |
| TGTCAAAGAAATTACAAGAG+TGG | - | chr1.4:84395311-84395330 | None:intergenic | 30.0% | |
| TTGTTTGTGTTTCATTGGAA+TGG | + | chr1.4:84393873-84393892 | MS.gene029411:intron | 30.0% | |
| TTTATATTCGGACAGTCAAT+GGG | + | chr1.4:84395119-84395138 | MS.gene029411:CDS | 30.0% | |
| TTTGAAGGAACCAAATGATT+GGG | + | chr1.4:84395166-84395185 | MS.gene029411:CDS | 30.0% | |
| ! | ATAATTGTTCAGGTATTGCA+AGG | + | chr1.4:84394552-84394571 | MS.gene029411:intron | 30.0% |
| ! | CAAGTTTGAGATTCAATACT+TGG | + | chr1.4:84395391-84395410 | MS.gene029411:intron | 30.0% |
| !! | GATTAGTTTAAAAAGGATGG+AGG | + | chr1.4:84394829-84394848 | MS.gene029411:intron | 30.0% |
| !! | TATGGAAATAGTTTTGCCTT+TGG | - | chr1.4:84395695-84395714 | None:intergenic | 30.0% |
| !! | TTGTTTTTCTGTCATGGATA+TGG | + | chr1.4:84394444-84394463 | MS.gene029411:CDS | 30.0% |
| !!! | AATGGTTTTGTGATCCAAAT+CGG | - | chr1.4:84393563-84393582 | None:intergenic | 30.0% |
| AAAAACAAAGCCCCTTTGAT+TGG | - | chr1.4:84394432-84394451 | None:intergenic | 35.0% | |
| AATGGACATACCTTACACAT+TGG | - | chr1.4:84395212-84395231 | None:intergenic | 35.0% | |
| ACACTAAAGATCTATGAAGG+AGG | + | chr1.4:84396163-84396182 | MS.gene029411:CDS | 35.0% | |
| ACCATGAGATGATGTCATTA+TGG | - | chr1.4:84396237-84396256 | None:intergenic | 35.0% | |
| ACCTTCAAAATTGTAGTTGG+CGG | - | chr1.4:84395647-84395666 | None:intergenic | 35.0% | |
| ACTTGCACTTTCTTCTTTGA+AGG | + | chr1.4:84394471-84394490 | MS.gene029411:CDS | 35.0% | |
| AGTGGTATGAAAGGAATTCA+AGG | + | chr1.4:84394361-84394380 | MS.gene029411:intron | 35.0% | |
| AGTTCAGATAGATCCTTGTA+TGG | - | chr1.4:84395713-84395732 | None:intergenic | 35.0% | |
| AGTTGTATTAGCACATCTGT+TGG | + | chr1.4:84395566-84395585 | MS.gene029411:intron | 35.0% | |
| ATAGATTGCAACAACGATCA+CGG | - | chr1.4:84394747-84394766 | None:intergenic | 35.0% | |
| ATCAAGGTTAAGAGAAGCTA+TGG | - | chr1.4:84393703-84393722 | None:intergenic | 35.0% | |
| GACTGTCCGAATATAAATTG+CGG | - | chr1.4:84395116-84395135 | None:intergenic | 35.0% | |
| GATCAAACACGATTAAGAAC+TGG | + | chr1.4:84395887-84395906 | MS.gene029411:CDS | 35.0% | |
| GATTATGGTGTAAGGGTAAA+GGG | - | chr1.4:84393587-84393606 | None:intergenic | 35.0% | |
| GCTCCATTATTGATACTTCA+TGG | + | chr1.4:84396070-84396089 | MS.gene029411:CDS | 35.0% | |
| GGCAAAACTATTTCCATACA+AGG | + | chr1.4:84395697-84395716 | MS.gene029411:CDS | 35.0% | |
| GGTTTATCTGAAGGATTACA+TGG | + | chr1.4:84394626-84394645 | MS.gene029411:CDS | 35.0% | |
| GTCAATGTAAATGCATCGAA+AGG | - | chr1.4:84395068-84395087 | None:intergenic | 35.0% | |
| GTGGTATGAAAGGAATTCAA+GGG | + | chr1.4:84394362-84394381 | MS.gene029411:intron | 35.0% | |
| TAACATGCCTTCTGATATCT+TGG | - | chr1.4:84395624-84395643 | None:intergenic | 35.0% | |
| TCAACCAAGAACAACAAATC+AGG | - | chr1.4:84395598-84395617 | None:intergenic | 35.0% | |
| TCAAGATATTGAGTCACAGT+TGG | + | chr1.4:84395931-84395950 | MS.gene029411:CDS | 35.0% | |
| TCATCTCATGGTTAGACATT+AGG | + | chr1.4:84396245-84396264 | MS.gene029411:CDS | 35.0% | |
| TCCATAATGACATCATCTCA+TGG | + | chr1.4:84396233-84396252 | MS.gene029411:CDS | 35.0% | |
| TGCTCTTAAAGCTCATTTGA+AGG | + | chr1.4:84395151-84395170 | MS.gene029411:CDS | 35.0% | |
| TGGTATGAAAGGAATTCAAG+GGG | + | chr1.4:84394363-84394382 | MS.gene029411:CDS | 35.0% | |
| TTGATTGCCAAGATATCAGA+AGG | + | chr1.4:84395614-84395633 | MS.gene029411:intron | 35.0% | |
| TTGGTTATCAGTGGTATGAA+AGG | + | chr1.4:84394352-84394371 | MS.gene029411:intron | 35.0% | |
| TTTGCTCACTTTCTGTTACT+TGG | + | chr1.4:84395973-84395992 | MS.gene029411:intron | 35.0% | |
| ! | ATTTGATAACTCTCTAGCTC+TGG | - | chr1.4:84394509-84394528 | None:intergenic | 35.0% |
| ! | CTTGTCTAAAATGATGCCAA+AGG | + | chr1.4:84395676-84395695 | MS.gene029411:CDS | 35.0% |
| ! | GCTCCATGAAGTATCAATAA+TGG | - | chr1.4:84396076-84396095 | None:intergenic | 35.0% |
| ! | GCTTTTGTCCAAATCGATAT+TGG | + | chr1.4:84395477-84395496 | MS.gene029411:intron | 35.0% |
| ! | TAAAGAAACTGGCTCACTAA+TGG | - | chr1.4:84396118-84396137 | None:intergenic | 35.0% |
| ! | TGCAAAAGAATACTGGTTGA+GGG | - | chr1.4:84395373-84395392 | None:intergenic | 35.0% |
| ! | TGGTAGAGTGCAAATTTTCA+AGG | - | chr1.4:84395808-84395827 | None:intergenic | 35.0% |
| ! | TTGCAAAAGAATACTGGTTG+AGG | - | chr1.4:84395374-84395393 | None:intergenic | 35.0% |
| !! | TGGATTTGGTGTTTATGCAA+TGG | + | chr1.4:84394589-84394608 | MS.gene029411:CDS | 35.0% |
| !!! | ATTTTAGCTGCTTCTGGATT+TGG | + | chr1.4:84394575-84394594 | MS.gene029411:CDS | 35.0% |
| AACACGATTAAGAACTGGCA+TGG | + | chr1.4:84395892-84395911 | MS.gene029411:CDS | 40.0% | |
| AACATGGCGTTCCAATCAAA+GGG | + | chr1.4:84394418-84394437 | MS.gene029411:CDS | 40.0% | |
| AAGGAACCAAATGATTGGGA+CGG | + | chr1.4:84395170-84395189 | MS.gene029411:CDS | 40.0% | |
| ACTTCATGGAGCAGAAGATA+AGG | + | chr1.4:84396084-84396103 | MS.gene029411:CDS | 40.0% | |
| ATCTATGAAGGAGGTTACCA+TGG | + | chr1.4:84396172-84396191 | MS.gene029411:CDS | 40.0% | |
| CAACATCAAATGCAACACAG+AGG | - | chr1.4:84395235-84395254 | None:intergenic | 40.0% | |
| CTGTGACTCAATATCTTGAG+TGG | - | chr1.4:84395930-84395949 | None:intergenic | 40.0% | |
| CTTCAGATAAACCGAAACCT+GGG | - | chr1.4:84394619-84394638 | None:intergenic | 40.0% | |
| GGATTATGGTGTAAGGGTAA+AGG | - | chr1.4:84393588-84393607 | None:intergenic | 40.0% | |
| GTCGCACAAATGTTTATGTC+AGG | - | chr1.4:84394104-84394123 | None:intergenic | 40.0% | |
| TATAATAGACTGCACCTGCT+GGG | + | chr1.4:84393903-84393922 | MS.gene029411:intron | 40.0% | |
| TATTGAGTCACAGTTGGAGA+AGG | + | chr1.4:84395937-84395956 | MS.gene029411:CDS | 40.0% | |
| TCAAATGCAACACAGAGGAA+TGG | - | chr1.4:84395230-84395249 | None:intergenic | 40.0% | |
| TGAAAGGAATTCAAGGGGAT+TGG | + | chr1.4:84394368-84394387 | MS.gene029411:CDS | 40.0% | |
| ! | ACCAACCAATTTTCTCTTGC+CGG | - | chr1.4:84395750-84395769 | None:intergenic | 40.0% |
| ! | ACCGCCAACTACAATTTTGA+AGG | + | chr1.4:84395643-84395662 | MS.gene029411:CDS | 40.0% |
| ! | CGATGATGATGAGTATAGCA+AGG | + | chr1.4:84393980-84393999 | MS.gene029411:intron | 40.0% |
| ! | GTATAGCAAGGCATTATGCT+TGG | + | chr1.4:84393992-84394011 | MS.gene029411:intron | 40.0% |
| ! | GTTTATGCAATGGATTTCCC+AGG | + | chr1.4:84394599-84394618 | MS.gene029411:CDS | 40.0% |
| ! | TGGAGATTTTCTGCAAAAGC+TGG | + | chr1.4:84394388-84394407 | MS.gene029411:CDS | 40.0% |
| ! | TTCACAGTTTAGGGCATGTT+TGG | - | chr1.4:84394296-84394315 | None:intergenic | 40.0% |
| !! | GAACTTATTTTCCGAGAACC+CGG | + | chr1.4:84395728-84395747 | MS.gene029411:CDS | 40.0% |
| !! | GAAGCCTGATTTGTTGTTCT+TGG | + | chr1.4:84395591-84395610 | MS.gene029411:intron | 40.0% |
| AAAAGCTGGATGCCAGAACA+TGG | + | chr1.4:84394402-84394421 | MS.gene029411:CDS | 45.0% | |
| ACATGGCGTTCCAATCAAAG+GGG | + | chr1.4:84394419-84394438 | MS.gene029411:CDS | 45.0% | |
| AGAACCCGGCAAGAGAAAAT+TGG | + | chr1.4:84395742-84395761 | MS.gene029411:CDS | 45.0% | |
| ATATTCGGACAGTCAATGGG+TGG | + | chr1.4:84395122-84395141 | MS.gene029411:CDS | 45.0% | |
| ATGACAACGACACTCCGATT+TGG | + | chr1.4:84393546-84393565 | MS.gene029411:CDS | 45.0% | |
| ATGACTCCGTCCCAATCATT+TGG | - | chr1.4:84395179-84395198 | None:intergenic | 45.0% | |
| CCAGGTTTCGGTTTATCTGA+AGG | + | chr1.4:84394617-84394636 | MS.gene029411:CDS | 45.0% | |
| CCTTACACATTGGAGCTACA+AGG | - | chr1.4:84395202-84395221 | None:intergenic | 45.0% | |
| CCTTCAGATAAACCGAAACC+TGG | - | chr1.4:84394620-84394639 | None:intergenic | 45.0% | |
| CCTTGTAGCTCCAATGTGTA+AGG | + | chr1.4:84395199-84395218 | MS.gene029411:CDS | 45.0% | |
| CTATAATAGACTGCACCTGC+TGG | + | chr1.4:84393902-84393921 | MS.gene029411:intron | 45.0% | |
| CTCATCGCTGATACCTTCAA+TGG | - | chr1.4:84393673-84393692 | None:intergenic | 45.0% | |
| GAACATGGCGTTCCAATCAA+AGG | + | chr1.4:84394417-84394436 | MS.gene029411:CDS | 45.0% | |
| GGTGTAAGGGTAAAGGGAAA+TGG | - | chr1.4:84393581-84393600 | None:intergenic | 45.0% | |
| GTTCACCTTCCAAAATGCCA+TGG | - | chr1.4:84396192-84396211 | None:intergenic | 45.0% | |
| TACATTGACAGCTAGACCAG+AGG | + | chr1.4:84395079-84395098 | MS.gene029411:intron | 45.0% | |
| TCTTGAGTTATGATCCCAGC+AGG | - | chr1.4:84393920-84393939 | None:intergenic | 45.0% | |
| TGCATTCACTCTCAGTCTCA+GGG | - | chr1.4:84393637-84393656 | None:intergenic | 45.0% | |
| TGTCGAACATGTCTACGAGA+AGG | - | chr1.4:84393732-84393751 | None:intergenic | 45.0% | |
| TTGATTGGAACGCCATGTTC+TGG | - | chr1.4:84394417-84394436 | None:intergenic | 45.0% | |
| TTGCATTCACTCTCAGTCTC+AGG | - | chr1.4:84393638-84393657 | None:intergenic | 45.0% | |
| TTGCTGATGCACATGAGTGA+AGG | - | chr1.4:84393757-84393776 | None:intergenic | 45.0% | |
| ! | AGGAGGTTACCATGGCATTT+TGG | + | chr1.4:84396180-84396199 | MS.gene029411:CDS | 45.0% |
| ! | ATTTTCTCTTGCCGGGTTCT+CGG | - | chr1.4:84395742-84395761 | None:intergenic | 45.0% |
| ! | CCAACCAATTTTCTCTTGCC+GGG | - | chr1.4:84395749-84395768 | None:intergenic | 45.0% |
| ! | GCAATGGATTTCCCAGGTTT+CGG | + | chr1.4:84394605-84394624 | MS.gene029411:CDS | 45.0% |
| ! | GGTTACCATGGCATTTTGGA+AGG | + | chr1.4:84396184-84396203 | MS.gene029411:CDS | 45.0% |
| ! | TACGAGAAGGTGCATGATCA+AGG | - | chr1.4:84393719-84393738 | None:intergenic | 45.0% |
| !!! | GCAAGGATTTTAGCTGCTTC+TGG | + | chr1.4:84394569-84394588 | MS.gene029411:CDS | 45.0% |
| !!! | GGGGCTTTGTTTTTCTGTCA+TGG | + | chr1.4:84394438-84394457 | MS.gene029411:CDS | 45.0% |
| CCCGGCAAGAGAAAATTGGT+TGG | + | chr1.4:84395746-84395765 | MS.gene029411:intron | 50.0% | |
| GACAGCTAGACCAGAGGTGA+GGG | + | chr1.4:84395085-84395104 | MS.gene029411:intron | 55.0% | |
| TGACAGCTAGACCAGAGGTG+AGG | + | chr1.4:84395084-84395103 | MS.gene029411:intron | 55.0% | |
| TGCGGCAAATCCCTCACCTC+TGG | - | chr1.4:84395098-84395117 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 84393534 | 84396279 | 84393534 | ID=MS.gene029411 |
| chr1.4 | mRNA | 84393534 | 84396279 | 84393534 | ID=MS.gene029411.t1;Parent=MS.gene029411 |
| chr1.4 | exon | 84393534 | 84393797 | 84393534 | ID=MS.gene029411.t1.exon1;Parent=MS.gene029411.t1 |
| chr1.4 | CDS | 84393534 | 84393797 | 84393534 | ID=cds.MS.gene029411.t1;Parent=MS.gene029411.t1 |
| chr1.4 | exon | 84393911 | 84393940 | 84393911 | ID=MS.gene029411.t1.exon2;Parent=MS.gene029411.t1 |
| chr1.4 | CDS | 84393911 | 84393940 | 84393911 | ID=cds.MS.gene029411.t1;Parent=MS.gene029411.t1 |
| chr1.4 | exon | 84394363 | 84394492 | 84394363 | ID=MS.gene029411.t1.exon3;Parent=MS.gene029411.t1 |
| chr1.4 | CDS | 84394363 | 84394492 | 84394363 | ID=cds.MS.gene029411.t1;Parent=MS.gene029411.t1 |
| chr1.4 | exon | 84394564 | 84394710 | 84394564 | ID=MS.gene029411.t1.exon4;Parent=MS.gene029411.t1 |
| chr1.4 | CDS | 84394564 | 84394710 | 84394564 | ID=cds.MS.gene029411.t1;Parent=MS.gene029411.t1 |
| chr1.4 | exon | 84395090 | 84395220 | 84395090 | ID=MS.gene029411.t1.exon5;Parent=MS.gene029411.t1 |
| chr1.4 | CDS | 84395090 | 84395220 | 84395090 | ID=cds.MS.gene029411.t1;Parent=MS.gene029411.t1 |
| chr1.4 | exon | 84395626 | 84395763 | 84395626 | ID=MS.gene029411.t1.exon6;Parent=MS.gene029411.t1 |
| chr1.4 | CDS | 84395626 | 84395763 | 84395626 | ID=cds.MS.gene029411.t1;Parent=MS.gene029411.t1 |
| chr1.4 | exon | 84395860 | 84395958 | 84395860 | ID=MS.gene029411.t1.exon7;Parent=MS.gene029411.t1 |
| chr1.4 | CDS | 84395860 | 84395958 | 84395860 | ID=cds.MS.gene029411.t1;Parent=MS.gene029411.t1 |
| chr1.4 | exon | 84396064 | 84396279 | 84396064 | ID=MS.gene029411.t1.exon8;Parent=MS.gene029411.t1 |
| chr1.4 | CDS | 84396064 | 84396279 | 84396064 | ID=cds.MS.gene029411.t1;Parent=MS.gene029411.t1 |
| Gene Sequence |
| Protein sequence |
