Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042920.t1 | XP_013452720.1 | 94.1 | 392 | 22 | 1 | 1 | 392 | 1 | 391 | 8.50E-209 | 736.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042920.t1 | Q9C942 | 33.9 | 283 | 176 | 8 | 119 | 392 | 44 | 324 | 2.2e-32 | 141.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042920.t1 | A0A072UCF9 | 94.1 | 392 | 22 | 1 | 1 | 392 | 1 | 391 | 6.1e-209 | 736.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042920 | MS.gene65684 | PPI |
| MS.gene042920 | MS.gene053811 | PPI |
| MS.gene042920 | MS.gene029411 | PPI |
| MS.gene96656 | MS.gene042920 | PPI |
| MS.gene63039 | MS.gene042920 | PPI |
| MS.gene042920 | MS.gene76310 | PPI |
| MS.gene042920 | MS.gene065143 | PPI |
| MS.gene042920 | MS.gene71828 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042920.t1 | MTR_6g071475 | 96.939 | 392 | 11 | 1 | 1 | 392 | 1 | 391 | 0.0 | 784 |
| MS.gene042920.t1 | MTR_3g109870 | 50.166 | 301 | 133 | 1 | 92 | 392 | 72 | 355 | 2.39e-101 | 305 |
| MS.gene042920.t1 | MTR_4g089170 | 36.620 | 284 | 166 | 9 | 119 | 391 | 43 | 323 | 2.66e-43 | 154 |
| MS.gene042920.t1 | MTR_6g025610 | 36.429 | 280 | 159 | 9 | 123 | 389 | 52 | 325 | 3.21e-42 | 151 |
| MS.gene042920.t1 | MTR_6g018490 | 35.842 | 279 | 162 | 8 | 123 | 389 | 62 | 335 | 1.75e-41 | 149 |
| MS.gene042920.t1 | MTR_1g088470 | 35.495 | 293 | 162 | 11 | 116 | 392 | 11 | 292 | 1.28e-39 | 144 |
| MS.gene042920.t1 | MTR_1g110670 | 34.028 | 288 | 180 | 8 | 113 | 391 | 71 | 357 | 3.65e-38 | 141 |
| MS.gene042920.t1 | MTR_7g007260 | 34.173 | 278 | 168 | 9 | 123 | 389 | 63 | 336 | 1.29e-36 | 136 |
| MS.gene042920.t1 | MTR_7g007260 | 32.609 | 276 | 163 | 7 | 123 | 389 | 63 | 324 | 6.02e-36 | 134 |
| MS.gene042920.t1 | MTR_7g108770 | 34.507 | 284 | 172 | 9 | 115 | 389 | 10 | 288 | 8.55e-36 | 134 |
| MS.gene042920.t1 | MTR_7g007260 | 32.971 | 276 | 161 | 8 | 123 | 389 | 63 | 323 | 5.18e-35 | 132 |
| MS.gene042920.t1 | MTR_4g127220 | 33.681 | 288 | 170 | 10 | 119 | 392 | 35 | 315 | 1.30e-34 | 130 |
| MS.gene042920.t1 | MTR_5g056550 | 34.589 | 292 | 169 | 13 | 115 | 391 | 107 | 391 | 2.99e-34 | 131 |
| MS.gene042920.t1 | MTR_1g115535 | 31.655 | 278 | 179 | 6 | 123 | 391 | 22 | 297 | 4.41e-33 | 126 |
| MS.gene042920.t1 | MTR_1g115535 | 31.655 | 278 | 179 | 6 | 123 | 391 | 18 | 293 | 5.64e-33 | 126 |
| MS.gene042920.t1 | MTR_6g084420 | 31.429 | 280 | 180 | 7 | 121 | 390 | 60 | 337 | 1.97e-31 | 122 |
| MS.gene042920.t1 | MTR_5g056550 | 31.834 | 289 | 148 | 11 | 115 | 391 | 107 | 358 | 1.59e-25 | 106 |
| MS.gene042920.t1 | MTR_1g095110 | 30.714 | 280 | 178 | 9 | 121 | 388 | 37 | 312 | 1.85e-24 | 102 |
| MS.gene042920.t1 | MTR_5g056550 | 33.333 | 135 | 80 | 5 | 104 | 231 | 96 | 227 | 4.53e-12 | 66.2 |
| MS.gene042920.t1 | MTR_5g056550 | 33.333 | 135 | 80 | 5 | 104 | 231 | 96 | 227 | 6.15e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042920.t1 | AT1G73480 | 61.637 | 391 | 128 | 5 | 14 | 392 | 83 | 463 | 6.59e-169 | 481 |
| MS.gene042920.t1 | AT1G18360 | 67.774 | 301 | 94 | 2 | 95 | 392 | 82 | 382 | 2.03e-149 | 428 |
| MS.gene042920.t1 | AT5G11650 | 58.609 | 302 | 120 | 2 | 92 | 392 | 82 | 379 | 2.47e-125 | 367 |
| MS.gene042920.t1 | AT5G11650 | 57.273 | 220 | 89 | 2 | 92 | 310 | 82 | 297 | 4.22e-85 | 261 |
| MS.gene042920.t1 | AT2G39420 | 37.276 | 279 | 164 | 7 | 123 | 392 | 19 | 295 | 1.47e-43 | 154 |
| MS.gene042920.t1 | AT2G39410 | 34.892 | 278 | 170 | 5 | 123 | 391 | 19 | 294 | 6.65e-40 | 144 |
| MS.gene042920.t1 | AT1G11090 | 34.471 | 293 | 162 | 13 | 118 | 391 | 33 | 314 | 2.28e-39 | 143 |
| MS.gene042920.t1 | AT5G16120 | 34.375 | 320 | 182 | 12 | 89 | 390 | 29 | 338 | 4.40e-39 | 143 |
| MS.gene042920.t1 | AT5G16120 | 34.375 | 320 | 182 | 12 | 89 | 390 | 29 | 338 | 4.40e-39 | 143 |
| MS.gene042920.t1 | AT5G16120 | 34.375 | 320 | 182 | 12 | 89 | 390 | 47 | 356 | 4.65e-39 | 144 |
| MS.gene042920.t1 | AT5G16120 | 34.483 | 319 | 181 | 12 | 89 | 389 | 61 | 369 | 6.14e-39 | 144 |
| MS.gene042920.t1 | AT2G39400 | 33.214 | 280 | 176 | 5 | 121 | 391 | 11 | 288 | 2.46e-37 | 137 |
| MS.gene042920.t1 | AT1G52760 | 32.867 | 286 | 175 | 8 | 119 | 392 | 44 | 324 | 3.68e-37 | 137 |
| MS.gene042920.t1 | AT3G55180 | 33.929 | 280 | 171 | 9 | 123 | 391 | 13 | 289 | 2.27e-34 | 129 |
| MS.gene042920.t1 | AT5G14980 | 30.797 | 276 | 182 | 6 | 124 | 391 | 41 | 315 | 4.60e-32 | 124 |
| MS.gene042920.t1 | AT3G55190 | 31.488 | 289 | 172 | 9 | 121 | 392 | 17 | 296 | 6.11e-31 | 120 |
| MS.gene042920.t1 | AT3G62860 | 31.541 | 279 | 179 | 7 | 123 | 392 | 17 | 292 | 2.68e-29 | 117 |
| MS.gene042920.t1 | AT1G77420 | 32.986 | 288 | 181 | 8 | 115 | 392 | 94 | 379 | 2.80e-29 | 117 |
| MS.gene042920.t1 | AT2G47630 | 31.429 | 280 | 180 | 7 | 123 | 392 | 17 | 294 | 5.06e-29 | 116 |
| MS.gene042920.t1 | AT3G62860 | 31.799 | 239 | 153 | 5 | 162 | 392 | 13 | 249 | 4.46e-27 | 109 |
| MS.gene042920.t1 | AT2G47630 | 31.799 | 239 | 153 | 5 | 162 | 392 | 13 | 249 | 2.29e-26 | 107 |
| MS.gene042920.t1 | AT5G19290 | 29.496 | 278 | 186 | 8 | 123 | 391 | 40 | 316 | 2.33e-26 | 108 |
| MS.gene042920.t1 | AT2G47630 | 31.933 | 238 | 152 | 5 | 162 | 391 | 33 | 268 | 2.66e-26 | 108 |
| MS.gene042920.t1 | AT2G39400 | 27.907 | 215 | 147 | 4 | 121 | 329 | 11 | 223 | 3.84e-17 | 80.9 |
| MS.gene042920.t1 | AT2G39410 | 42.857 | 77 | 43 | 1 | 123 | 198 | 19 | 95 | 1.02e-11 | 62.0 |
Find 82 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGCACCACCGCGCCTTTC+CGG | 0.142261 | 6.1:+64733548 | None:intergenic |
| GCTAATGGCTACAAGGTTTA+TGG | 0.174876 | 6.1:-64731938 | MS.gene042920:CDS |
| TCAGTGATATCCTCTCTTTC+AGG | 0.185889 | 6.1:+64728344 | None:intergenic |
| GCTATGCAAGCTTCAATCTT+TGG | 0.224210 | 6.1:+64729168 | None:intergenic |
| TGAGGAGGGAATTGGCTATA+AGG | 0.289591 | 6.1:-64733450 | MS.gene042920:CDS |
| TGATCATGCGGTTTCTGATT+TGG | 0.303763 | 6.1:-64729947 | MS.gene042920:intron |
| ACCCTTCTTCTCCCTCTAAA+TGG | 0.317666 | 6.1:+64733628 | None:intergenic |
| AGGCGCGGTGGTGCGCGTTC+CGG | 0.319890 | 6.1:-64733542 | MS.gene042920:CDS |
| ATTGGCTATAAGGAGAGTTT+TGG | 0.320255 | 6.1:-64733440 | MS.gene042920:CDS |
| GAAAATTGTATCACCCCTTT+TGG | 0.323417 | 6.1:+64733372 | None:intergenic |
| TTACGAACCTGTGTTCATTA+AGG | 0.324582 | 6.1:+64732082 | None:intergenic |
| CTCCTCTTTCTGTTAAGATT+AGG | 0.351584 | 6.1:-64733336 | MS.gene042920:intron |
| TTCCATGGCACAATCTTTGC+CGG | 0.361074 | 6.1:+64733523 | None:intergenic |
| GTTAATATCAGCTATGGTTA+TGG | 0.380117 | 6.1:-64733662 | MS.gene042920:CDS |
| CTATGCAAGCTTCAATCTTT+GGG | 0.383116 | 6.1:+64729169 | None:intergenic |
| GCCTCCGGGTCTCGAGAAAC+TGG | 0.383816 | 6.1:+64728620 | None:intergenic |
| GCAAAGCAGCTGAATGCTAA+TGG | 0.387246 | 6.1:-64731953 | MS.gene042920:CDS |
| CATATGATCCAATACCTTCA+TGG | 0.392758 | 6.1:+64733474 | None:intergenic |
| CTAATGGCTACAAGGTTTAT+GGG | 0.405878 | 6.1:-64731937 | MS.gene042920:CDS |
| GAGTGGTGGTGGTGTTGGTA+TGG | 0.410418 | 6.1:-64733500 | MS.gene042920:CDS |
| AGAAATGTTTGAGGGAGTAT+TGG | 0.428648 | 6.1:-64733405 | MS.gene042920:CDS |
| ACAAGGTTTATGGGATGGAT+TGG | 0.430990 | 6.1:-64731928 | MS.gene042920:CDS |
| TCATATGATGAGGAGGGAAT+TGG | 0.431514 | 6.1:-64733458 | MS.gene042920:CDS |
| AGGTGCAGCAATTACTCTTA+AGG | 0.431996 | 6.1:-64729287 | MS.gene042920:intron |
| AAGATTGAAGCTTGCATAGC+TGG | 0.434921 | 6.1:-64729165 | MS.gene042920:CDS |
| TGTAATTCTGCATACAAGAA+AGG | 0.439128 | 6.1:-64728647 | MS.gene042920:CDS |
| TTCTGCTATGGACACTCAAC+AGG | 0.442845 | 6.1:-64729307 | MS.gene042920:CDS |
| GGTCTTCCATGTTTCTGCTA+TGG | 0.444535 | 6.1:-64729319 | MS.gene042920:CDS |
| TTAGGTCATGGTGGCAGTGA+TGG | 0.447673 | 6.1:-64729994 | MS.gene042920:intron |
| TACCTAATCTTAACAGAAAG+AGG | 0.448951 | 6.1:+64733334 | None:intergenic |
| ACAGAAAGTGTTTATTGAGA+AGG | 0.456275 | 6.1:-64729359 | MS.gene042920:intron |
| TACCATTTAGAGGGAGAAGA+AGG | 0.463919 | 6.1:-64733630 | MS.gene042920:CDS |
| GTGCCGTGTAGAACAAGAAA+TGG | 0.464730 | 6.1:+64728479 | None:intergenic |
| TATGGTTGCCATGAAGGTAT+TGG | 0.482879 | 6.1:-64733482 | MS.gene042920:CDS |
| GGCAGCAATAATGATGCTAT+TGG | 0.484554 | 6.1:+64728680 | None:intergenic |
| GTGATCCGGTGCATACCAAC+GGG | 0.493666 | 6.1:+64728576 | None:intergenic |
| TTTCTTGTTCTACACGGCAC+TGG | 0.504024 | 6.1:-64728476 | MS.gene042920:CDS |
| GGACTTGTTATTATTATGCA+TGG | 0.507599 | 6.1:-64732105 | MS.gene042920:CDS |
| TATTTCGCGATGAGAGCCTC+CGG | 0.510804 | 6.1:+64728605 | None:intergenic |
| GTAATTCTGCATACAAGAAA+GGG | 0.511234 | 6.1:-64728646 | MS.gene042920:CDS |
| TGTTGGTATGGTTGCCATGA+AGG | 0.516009 | 6.1:-64733488 | MS.gene042920:CDS |
| TGGAAGAGTGGTGGTGGTGT+TGG | 0.521393 | 6.1:-64733505 | MS.gene042920:CDS |
| AAAAGCATCAAATTGTATGA+AGG | 0.526003 | 6.1:-64728392 | MS.gene042920:CDS |
| AAGGTTATAACTGAAAATCC+TGG | 0.527140 | 6.1:-64729340 | MS.gene042920:CDS |
| AAACCGCATGATCAAGAGAA+TGG | 0.534522 | 6.1:+64729956 | None:intergenic |
| TGGCTACAAGGTTTATGGGA+TGG | 0.547371 | 6.1:-64731933 | MS.gene042920:CDS |
| GTTTATGGGATGGATTGGAT+TGG | 0.548054 | 6.1:-64731923 | MS.gene042920:intron |
| TGTCCATTCTCTTGATCATG+CGG | 0.558159 | 6.1:-64729959 | MS.gene042920:CDS |
| GAAGTCTCAACTCCAACTGC+AGG | 0.560499 | 6.1:+64729126 | None:intergenic |
| GGTTCGTACTCTAAGTGATC+CGG | 0.562025 | 6.1:+64728562 | None:intergenic |
| GTGCCATGGAAGAGTGGTGG+TGG | 0.564140 | 6.1:-64733511 | MS.gene042920:CDS |
| AGTGATCCGGTGCATACCAA+CGG | 0.566606 | 6.1:+64728575 | None:intergenic |
| CGCGAAATATTCAGACCCGT+TGG | 0.567506 | 6.1:-64728591 | MS.gene042920:CDS |
| GCTGAATGCTAATGGCTACA+AGG | 0.567854 | 6.1:-64731945 | MS.gene042920:CDS |
| TCACTGAAGATATAATTCAA+TGG | 0.568890 | 6.1:-64728328 | MS.gene042920:CDS |
| TGCATGGCCTTAATGAACAC+AGG | 0.576407 | 6.1:-64732089 | MS.gene042920:intron |
| GTTGCCAGTTTCTCGAGACC+CGG | 0.579629 | 6.1:-64728624 | MS.gene042920:CDS |
| ACACCACCACCACTCTTCCA+TGG | 0.584175 | 6.1:+64733508 | None:intergenic |
| TCAGACCCGTTGGTATGCAC+CGG | 0.584627 | 6.1:-64728581 | MS.gene042920:CDS |
| ACATTCACATCACCTGCAGT+TGG | 0.588536 | 6.1:-64729138 | MS.gene042920:CDS |
| TAGCAGAAACATGGAAGACC+AGG | 0.588633 | 6.1:+64729322 | None:intergenic |
| TATTGGATCATATGATGAGG+AGG | 0.588839 | 6.1:-64733465 | MS.gene042920:CDS |
| GGATCACTTAGAGTACGAAC+CGG | 0.588990 | 6.1:-64728560 | MS.gene042920:CDS |
| AGTGTTGTCATCATCATCAC+CGG | 0.591129 | 6.1:-64733567 | MS.gene042920:CDS |
| AATTCGAAGAATCTCATAGC+CGG | 0.591189 | 6.1:+64728541 | None:intergenic |
| ATTTCGCGATGAGAGCCTCC+GGG | 0.593930 | 6.1:+64728606 | None:intergenic |
| ATTGGATCATATGATGAGGA+GGG | 0.602424 | 6.1:-64733464 | MS.gene042920:CDS |
| ACTATTTGAACCTGAAAGAG+AGG | 0.606799 | 6.1:-64728354 | MS.gene042920:CDS |
| GGTGGCAGTGATGGTCTGCA+TGG | 0.618033 | 6.1:-64729985 | MS.gene042920:CDS |
| TGGTGATGAGAAATGTTTGA+GGG | 0.618883 | 6.1:-64733413 | MS.gene042920:CDS |
| ACCATTTAGAGGGAGAAGAA+GGG | 0.635222 | 6.1:-64733629 | MS.gene042920:CDS |
| GCCAGTTTCTCGAGACCCGG+AGG | 0.635519 | 6.1:-64728621 | MS.gene042920:CDS |
| TTCCGGCAAAGATTGTGCCA+TGG | 0.636721 | 6.1:-64733525 | MS.gene042920:CDS |
| TGTCATCATCATCACCGGAA+AGG | 0.643505 | 6.1:-64733562 | MS.gene042920:CDS |
| ATGGTGATGAGAAATGTTTG+AGG | 0.645654 | 6.1:-64733414 | MS.gene042920:CDS |
| AAGATTGTGCCATGGAAGAG+TGG | 0.646198 | 6.1:-64733517 | MS.gene042920:CDS |
| GTTCCATTTCTTGTTCTACA+CGG | 0.650148 | 6.1:-64728482 | MS.gene042920:CDS |
| GAGTGTCCATAGCAGAAACA+TGG | 0.652249 | 6.1:+64729313 | None:intergenic |
| TCATCATCACCGGAAAGGCG+CGG | 0.663566 | 6.1:-64733557 | MS.gene042920:CDS |
| AGGTATTGGATCATATGATG+AGG | 0.667641 | 6.1:-64733468 | MS.gene042920:CDS |
| TCATCACCGGAAAGGCGCGG+TGG | 0.687802 | 6.1:-64733554 | MS.gene042920:CDS |
| ATTGTGCCATGGAAGAGTGG+TGG | 0.729461 | 6.1:-64733514 | MS.gene042920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCTAAATAATTATAATT+TGG | + | chr6.1:64730156-64730175 | None:intergenic | 10.0% |
| !! | ATTTACATTATTTGATATAT+GGG | - | chr6.1:64730331-64730350 | MS.gene042920:intron | 10.0% |
| !!! | ATTTTTAATTTATCTATAGA+AGG | - | chr6.1:64729034-64729053 | MS.gene042920:intron | 10.0% |
| !!! | TAATTATGTTTTTTTTTGAT+AGG | + | chr6.1:64731858-64731877 | None:intergenic | 10.0% |
| !! | AAATTGATTATGAATAAAAG+TGG | - | chr6.1:64731541-64731560 | MS.gene042920:intron | 15.0% |
| !! | AATGTATGATTAATTATGTT+TGG | - | chr6.1:64733123-64733142 | MS.gene042920:intron | 15.0% |
| !! | ATTAGACAATAAAATATACA+AGG | + | chr6.1:64731962-64731981 | None:intergenic | 15.0% |
| !! | CATTTACATTATTTGATATA+TGG | - | chr6.1:64730330-64730349 | MS.gene042920:intron | 15.0% |
| !! | TAATTCAAAATTAATTGTCA+CGG | + | chr6.1:64731509-64731528 | None:intergenic | 15.0% |
| !! | TTCATTACTATACATATTAT+AGG | - | chr6.1:64732841-64732860 | MS.gene042920:intron | 15.0% |
| !! | TTTATATCTTATATGAAAAC+AGG | - | chr6.1:64732511-64732530 | MS.gene042920:intron | 15.0% |
| !!! | AATAGTTTTACATAAAAACA+AGG | + | chr6.1:64729261-64729280 | None:intergenic | 15.0% |
| !!! | ATCATAATTTTTTAAACACA+AGG | + | chr6.1:64728816-64728835 | None:intergenic | 15.0% |
| !!! | TGTATATTTTATTGTCTAAT+CGG | - | chr6.1:64731962-64731981 | MS.gene042920:CDS | 15.0% |
| !!! | TTTTAGTTAATAAAAAATCG+TGG | + | chr6.1:64733180-64733199 | None:intergenic | 15.0% |
| !! | AAAAAACTGAAGGAATAAAA+GGG | + | chr6.1:64729669-64729688 | None:intergenic | 20.0% |
| !! | AAAATTATGATTTATGAGCT+AGG | - | chr6.1:64728825-64728844 | MS.gene042920:intron | 20.0% |
| !! | AATCACTTAAATCAAAAAGT+TGG | + | chr6.1:64732983-64733002 | None:intergenic | 20.0% |
| !! | AGAATAAAGGAAATCAATTT+AGG | + | chr6.1:64730044-64730063 | None:intergenic | 20.0% |
| !! | ATGAATACATTATACTCAAT+TGG | + | chr6.1:64732826-64732845 | None:intergenic | 20.0% |
| !! | CATGACTTAAATTAAGTTAA+GGG | + | chr6.1:64729292-64729311 | None:intergenic | 20.0% |
| !! | CTTATTAAGGTTTCAAAAAA+TGG | + | chr6.1:64729487-64729506 | None:intergenic | 20.0% |
| !! | TATAAAATGTTGTCAAATAG+CGG | + | chr6.1:64729816-64729835 | None:intergenic | 20.0% |
| !! | TATACCACAAATAATACAAA+TGG | + | chr6.1:64729699-64729718 | None:intergenic | 20.0% |
| !! | TGTTGTATAATCTATAACTA+AGG | - | chr6.1:64732144-64732163 | MS.gene042920:intron | 20.0% |
| !! | TTAAGATTAGGTATGTTTAT+AGG | - | chr6.1:64728719-64728738 | MS.gene042920:intron | 20.0% |
| !! | TTATACTAAGTAGTGTATTA+CGG | - | chr6.1:64729831-64729850 | MS.gene042920:intron | 20.0% |
| !! | TTCAATGTAATTATATGTGT+CGG | + | chr6.1:64728916-64728935 | None:intergenic | 20.0% |
| !! | TTCATAGAAAATGCTTTAAT+GGG | + | chr6.1:64730686-64730705 | None:intergenic | 20.0% |
| !! | TTTATGTAAAACTATTTGAG+AGG | - | chr6.1:64729265-64729284 | MS.gene042920:intron | 20.0% |
| !!! | AAGTTAAATTCTAGCTTTAA+GGG | - | chr6.1:64731747-64731766 | MS.gene042920:intron | 20.0% |
| !!! | ATCAATGTTTTTACTTTTGA+AGG | + | chr6.1:64731710-64731729 | None:intergenic | 20.0% |
| !!! | ATTTTTTCGAAACTTTACTA+TGG | - | chr6.1:64732783-64732802 | MS.gene042920:intron | 20.0% |
| !!! | CGATTTTCTCAAATTATTAA+CGG | - | chr6.1:64728941-64728960 | MS.gene042920:intron | 20.0% |
| !!! | GAAGTTATACCTATTTTTAA+GGG | - | chr6.1:64730852-64730871 | MS.gene042920:intron | 20.0% |
| !!! | TGAAGTTATACCTATTTTTA+AGG | - | chr6.1:64730851-64730870 | MS.gene042920:intron | 20.0% |
| !!! | TTTATGCTTCTAGTTAATTA+AGG | - | chr6.1:64730518-64730537 | MS.gene042920:intron | 20.0% |
| !!! | TTTCTTATCTGAACATTTTT+TGG | - | chr6.1:64731323-64731342 | MS.gene042920:intron | 20.0% |
| !!! | TTTTTTCGAAACTTTACTAT+GGG | - | chr6.1:64732784-64732803 | MS.gene042920:intron | 20.0% |
| !!! | TTTTTTGAAACCTTAATAAG+TGG | - | chr6.1:64729487-64729506 | MS.gene042920:intron | 20.0% |
| ! | ACAAATAATACAAATGGTTG+AGG | + | chr6.1:64729693-64729712 | None:intergenic | 25.0% |
| ! | AGATTATACAACAAAATTCC+TGG | + | chr6.1:64732137-64732156 | None:intergenic | 25.0% |
| ! | ATGACAAAGTTTGTATTGTT+TGG | + | chr6.1:64731082-64731101 | None:intergenic | 25.0% |
| ! | ATTAGGTATGTTTATAGGTT+TGG | - | chr6.1:64728724-64728743 | MS.gene042920:intron | 25.0% |
| ! | ATTTCATAACTATGCAATGA+TGG | - | chr6.1:64733039-64733058 | MS.gene042920:intron | 25.0% |
| ! | CAAATAATACAAATGGTTGA+GGG | + | chr6.1:64729692-64729711 | None:intergenic | 25.0% |
| ! | CAAATAATTCAATCCAAACA+GGG | + | chr6.1:64732170-64732189 | None:intergenic | 25.0% |
| ! | CAACCATTATGATTATTATC+AGG | + | chr6.1:64729194-64729213 | None:intergenic | 25.0% |
| ! | CAATATTTGTGTAGTTTCTA+CGG | - | chr6.1:64730370-64730389 | MS.gene042920:intron | 25.0% |
| ! | CAATGCTCTTAATGAAAAAT+AGG | + | chr6.1:64728347-64728366 | None:intergenic | 25.0% |
| ! | CCATGACTTAAATTAAGTTA+AGG | + | chr6.1:64729293-64729312 | None:intergenic | 25.0% |
| ! | CCTTAACTTAATTTAAGTCA+TGG | - | chr6.1:64729290-64729309 | MS.gene042920:CDS | 25.0% |
| ! | CTGATAATAATCATAATGGT+TGG | - | chr6.1:64729192-64729211 | MS.gene042920:intron | 25.0% |
| ! | CTTCATAGAAAATGCTTTAA+TGG | + | chr6.1:64730687-64730706 | None:intergenic | 25.0% |
| ! | GAAAAAACTGAAGGAATAAA+AGG | + | chr6.1:64729670-64729689 | None:intergenic | 25.0% |
| ! | GTAAAATGTTAGTCAAATAG+CGG | + | chr6.1:64729904-64729923 | None:intergenic | 25.0% |
| ! | GTATGATTAATTATGTTTGG+CGG | - | chr6.1:64733126-64733145 | MS.gene042920:intron | 25.0% |
| ! | TACATTATTTGATATATGGG+AGG | - | chr6.1:64730334-64730353 | MS.gene042920:intron | 25.0% |
| ! | TATGTCAATATAACTGCAAT+TGG | + | chr6.1:64729388-64729407 | None:intergenic | 25.0% |
| ! | TCAAATAATTCAATCCAAAC+AGG | + | chr6.1:64732171-64732190 | None:intergenic | 25.0% |
| ! | TCAACCATTTGTATTATTTG+TGG | - | chr6.1:64729692-64729711 | MS.gene042920:intron | 25.0% |
| ! | TCACTGAAGATATAATTCAA+TGG | - | chr6.1:64733715-64733734 | MS.gene042920:CDS | 25.0% |
| ! | TCTAAAGATACCACTTATTA+AGG | + | chr6.1:64729500-64729519 | None:intergenic | 25.0% |
| ! | TCTCCTGATAATAATCATAA+TGG | - | chr6.1:64729188-64729207 | MS.gene042920:intron | 25.0% |
| ! | TGATAAGCTTACTTATATAC+AGG | + | chr6.1:64731226-64731245 | None:intergenic | 25.0% |
| ! | TGGATTGAACAATATATTTG+AGG | - | chr6.1:64731561-64731580 | MS.gene042920:intron | 25.0% |
| !! | ATACAATTTTCACACAATGT+TGG | - | chr6.1:64728683-64728702 | MS.gene042920:CDS | 25.0% |
| !! | GAAAGTATAGAAATGAATAG+TGG | + | chr6.1:64733324-64733343 | None:intergenic | 25.0% |
| !! | TACTTTTGTTACCATTTAGA+GGG | - | chr6.1:64728404-64728423 | MS.gene042920:CDS | 25.0% |
| !! | TAGATGCTTTTCTTACTATT+TGG | - | chr6.1:64731389-64731408 | MS.gene042920:intron | 25.0% |
| !! | TTAGTAGTTATGTTAGTTTC+CGG | + | chr6.1:64731814-64731833 | None:intergenic | 25.0% |
| !! | TTTTGTGTTAATATCAGCTA+TGG | - | chr6.1:64728375-64728394 | MS.gene042920:CDS | 25.0% |
| !!! | AAAAGCATCAAATTGTATGA+AGG | - | chr6.1:64733651-64733670 | MS.gene042920:CDS | 25.0% |
| !!! | ATGTTGACATTTTAACATCT+AGG | - | chr6.1:64730813-64730832 | MS.gene042920:intron | 25.0% |
| !!! | ATTTTTTGGTGTTTCATTAG+AGG | - | chr6.1:64731337-64731356 | MS.gene042920:intron | 25.0% |
| !!! | GAAGTTAAATTCTAGCTTTA+AGG | - | chr6.1:64731746-64731765 | MS.gene042920:intron | 25.0% |
| !!! | TAATTTGTTCTTTGATCAGT+AGG | - | chr6.1:64730419-64730438 | MS.gene042920:intron | 25.0% |
| !!! | TTCTTCATACAATTTTAGAG+AGG | + | chr6.1:64733616-64733635 | None:intergenic | 25.0% |
| AAGGTTATAACTGAAAATCC+TGG | - | chr6.1:64732703-64732722 | MS.gene042920:intron | 30.0% | |
| ACTTCAAGATACCATACTAA+TGG | + | chr6.1:64729622-64729641 | None:intergenic | 30.0% | |
| ATAAACAAATCTTGACACCA+TGG | - | chr6.1:64729405-64729424 | MS.gene042920:intron | 30.0% | |
| ATCAGGAAAACGGAAAAATA+AGG | - | chr6.1:64729109-64729128 | MS.gene042920:intron | 30.0% | |
| ATCTTCACTATGTTAGTACA+AGG | + | chr6.1:64730256-64730275 | None:intergenic | 30.0% | |
| CATAACAATGACACTTCAAA+TGG | + | chr6.1:64730796-64730815 | None:intergenic | 30.0% | |
| CATGAAACATGAAACAAACA+AGG | + | chr6.1:64729139-64729158 | None:intergenic | 30.0% | |
| CATGGTAAAACATGATTAGA+CGG | - | chr6.1:64733248-64733267 | MS.gene042920:intron | 30.0% | |
| CGTAGAAACTACACAAATAT+TGG | + | chr6.1:64730372-64730391 | None:intergenic | 30.0% | |
| CTTCAACATGCATCTATATT+TGG | - | chr6.1:64731152-64731171 | MS.gene042920:intron | 30.0% | |
| GTAATTCTGCATACAAGAAA+GGG | - | chr6.1:64733397-64733416 | MS.gene042920:CDS | 30.0% | |
| GTTAATATCAGCTATGGTTA+TGG | - | chr6.1:64728381-64728400 | MS.gene042920:CDS | 30.0% | |
| TACCTAATCTTAACAGAAAG+AGG | + | chr6.1:64728712-64728731 | None:intergenic | 30.0% | |
| TAGCCTAATAGAGAAACAAA+AGG | + | chr6.1:64730211-64730230 | None:intergenic | 30.0% | |
| TATGACAGTTTCATGAACAT+TGG | - | chr6.1:64731887-64731906 | MS.gene042920:intron | 30.0% | |
| TATTCAAACAGGACCTAAAA+CGG | - | chr6.1:64732577-64732596 | MS.gene042920:intron | 30.0% | |
| TGCTATAAGCTTATTCAAAC+AGG | - | chr6.1:64732566-64732585 | MS.gene042920:intron | 30.0% | |
| TGTAATTCTGCATACAAGAA+AGG | - | chr6.1:64733396-64733415 | MS.gene042920:CDS | 30.0% | |
| TGTTTCATTAGAGGTTTATG+TGG | - | chr6.1:64731346-64731365 | MS.gene042920:intron | 30.0% | |
| TTACTATTTGGAAGGAACAT+AGG | - | chr6.1:64731401-64731420 | MS.gene042920:intron | 30.0% | |
| TTCTATACTTTCGTCATTAC+AGG | - | chr6.1:64733332-64733351 | MS.gene042920:intron | 30.0% | |
| TTGAATGTAACTGCATGTAT+CGG | - | chr6.1:64730750-64730769 | MS.gene042920:intron | 30.0% | |
| TTTCCTTTATTCTCTAACAG+CGG | - | chr6.1:64730051-64730070 | MS.gene042920:intron | 30.0% | |
| ! | GTACTTTTGTTACCATTTAG+AGG | - | chr6.1:64728403-64728422 | MS.gene042920:CDS | 30.0% |
| ! | TAGTAGTTATGTTAGTTTCC+GGG | + | chr6.1:64731813-64731832 | None:intergenic | 30.0% |
| ! | TGCTTTTCTTACTATTTGGA+AGG | - | chr6.1:64731393-64731412 | MS.gene042920:intron | 30.0% |
| ! | TTCTTTTAACATAAACGCCT+CGG | + | chr6.1:64728320-64728339 | None:intergenic | 30.0% |
| ! | TTTTTATGAGCGCTATCAAA+CGG | + | chr6.1:64732224-64732243 | None:intergenic | 30.0% |
| !! | ACAGAAAGTGTTTATTGAGA+AGG | - | chr6.1:64732684-64732703 | MS.gene042920:intron | 30.0% |
| !! | ATAATCATTTTTCCACTAGG+AGG | - | chr6.1:64729541-64729560 | MS.gene042920:intron | 30.0% |
| !! | GCAGAATTACATTTTAGTGT+TGG | + | chr6.1:64733387-64733406 | None:intergenic | 30.0% |
| !! | GGACTTGTTATTATTATGCA+TGG | - | chr6.1:64729938-64729957 | MS.gene042920:intron | 30.0% |
| !! | GTTCCTTTTGTTTCTCTATT+AGG | - | chr6.1:64730205-64730224 | MS.gene042920:intron | 30.0% |
| !! | TAATCATTTTTCCACTAGGA+GGG | - | chr6.1:64729542-64729561 | MS.gene042920:intron | 30.0% |
| !! | TGCATAATCATTTTTCCACT+AGG | - | chr6.1:64729538-64729557 | MS.gene042920:intron | 30.0% |
| !! | TGTTACTTTATCGCACAAAT+AGG | + | chr6.1:64731194-64731213 | None:intergenic | 30.0% |
| !!! | AATCTTCTCCTCTTTTTCAA+CGG | + | chr6.1:64728446-64728465 | None:intergenic | 30.0% |
| !!! | TTGATTGTTTTGTTGGTTTC+TGG | - | chr6.1:64729219-64729238 | MS.gene042920:intron | 30.0% |
| AAATGTTAGTCAAATAGCGG+TGG | + | chr6.1:64729901-64729920 | None:intergenic | 35.0% | |
| AATTCGAAGAATCTCATAGC+CGG | + | chr6.1:64733505-64733524 | None:intergenic | 35.0% | |
| ACGCCTTCAATCATATTTGT+CGG | + | chr6.1:64732258-64732277 | None:intergenic | 35.0% | |
| ACGTATAAAGAGTTAGAAGG+AGG | - | chr6.1:64731770-64731789 | MS.gene042920:intron | 35.0% | |
| ACTATGTTAGTACAAGGACA+AGG | + | chr6.1:64730250-64730269 | None:intergenic | 35.0% | |
| ACTATTTGAACCTGAAAGAG+AGG | - | chr6.1:64733689-64733708 | MS.gene042920:CDS | 35.0% | |
| AGATACCATACTAATGGCAA+AGG | + | chr6.1:64729616-64729635 | None:intergenic | 35.0% | |
| AGATGCATGTTGAAGAATGA+TGG | + | chr6.1:64731147-64731166 | None:intergenic | 35.0% | |
| AGCGCTCATAAAAATCTTTG+AGG | - | chr6.1:64732230-64732249 | MS.gene042920:intron | 35.0% | |
| AGGAAGAAAATTGATTGCAC+AGG | + | chr6.1:64731690-64731709 | None:intergenic | 35.0% | |
| ATCAGTTGTGTTCATCTACA+TGG | - | chr6.1:64733230-64733249 | MS.gene042920:intron | 35.0% | |
| ATGAAGCACAGATATTGACA+CGG | + | chr6.1:64729002-64729021 | None:intergenic | 35.0% | |
| ATTGGATCATATGATGAGGA+GGG | - | chr6.1:64728579-64728598 | MS.gene042920:CDS | 35.0% | |
| CAAGTTTGAGCAAAAGTGAA+TGG | + | chr6.1:64732000-64732019 | None:intergenic | 35.0% | |
| CAGCTACAAAATCAGGAAAA+CGG | - | chr6.1:64729099-64729118 | MS.gene042920:intron | 35.0% | |
| CATATGATCCAATACCTTCA+TGG | + | chr6.1:64728572-64728591 | None:intergenic | 35.0% | |
| CATCTATATTTGGATGTTGC+AGG | - | chr6.1:64731162-64731181 | MS.gene042920:intron | 35.0% | |
| CCAAACAGACCCTTAAAAAT+AGG | + | chr6.1:64730864-64730883 | None:intergenic | 35.0% | |
| CTAATGGCTACAAGGTTTAT+GGG | - | chr6.1:64730106-64730125 | MS.gene042920:intron | 35.0% | |
| CTATGCAAGCTTCAATCTTT+GGG | + | chr6.1:64732877-64732896 | None:intergenic | 35.0% | |
| CTCCTCTTTCTGTTAAGATT+AGG | - | chr6.1:64728707-64728726 | MS.gene042920:intron | 35.0% | |
| CTGAAGAGCTTATGGAAATA+AGG | + | chr6.1:64732473-64732492 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTTC+AGG | - | chr6.1:64732471-64732490 | MS.gene042920:intron | 35.0% | |
| GAAATTCTTCATTGTGCACA+TGG | - | chr6.1:64730581-64730600 | MS.gene042920:intron | 35.0% | |
| GTTCCATTTCTTGTTCTACA+CGG | - | chr6.1:64733561-64733580 | MS.gene042920:CDS | 35.0% | |
| TATAAAGAGTTAGAAGGAGG+AGG | - | chr6.1:64731773-64731792 | MS.gene042920:intron | 35.0% | |
| TATCTTCTGGCATAACCTTT+GGG | - | chr6.1:64730901-64730920 | MS.gene042920:intron | 35.0% | |
| TATGATTTATGAGCTAGGCA+CGG | - | chr6.1:64728830-64728849 | MS.gene042920:intron | 35.0% | |
| TATTGGATCATATGATGAGG+AGG | - | chr6.1:64728578-64728597 | MS.gene042920:CDS | 35.0% | |
| TGGATGTGTTGTCTACATAA+GGG | - | chr6.1:64731907-64731926 | MS.gene042920:intron | 35.0% | |
| TGTATGCTTACCACCAAAAA+CGG | + | chr6.1:64732947-64732966 | None:intergenic | 35.0% | |
| TTACGAACCTGTGTTCATTA+AGG | + | chr6.1:64729964-64729983 | None:intergenic | 35.0% | |
| TTATCTTCTGGCATAACCTT+TGG | - | chr6.1:64730900-64730919 | MS.gene042920:intron | 35.0% | |
| TTGGATGTGTTGTCTACATA+AGG | - | chr6.1:64731906-64731925 | MS.gene042920:intron | 35.0% | |
| TTGTCTAATCGGATAGATTG+TGG | - | chr6.1:64731973-64731992 | MS.gene042920:CDS | 35.0% | |
| TTTGTCCTTTGCCATTAGTA+TGG | - | chr6.1:64729608-64729627 | MS.gene042920:intron | 35.0% | |
| TTTGTGACAGCTACAAAATC+AGG | - | chr6.1:64729092-64729111 | MS.gene042920:intron | 35.0% | |
| ! | AATATGATTGAAGGCGTGTT+CGG | - | chr6.1:64732261-64732280 | MS.gene042920:intron | 35.0% |
| ! | ACATTTTACCAACTTTGTGC+AGG | - | chr6.1:64729915-64729934 | MS.gene042920:intron | 35.0% |
| ! | AGAAATGTTTGAGGGAGTAT+TGG | - | chr6.1:64728638-64728657 | MS.gene042920:CDS | 35.0% |
| ! | ATGGTGATGAGAAATGTTTG+AGG | - | chr6.1:64728629-64728648 | MS.gene042920:CDS | 35.0% |
| ! | ATTGGCTATAAGGAGAGTTT+TGG | - | chr6.1:64728603-64728622 | MS.gene042920:CDS | 35.0% |
| ! | ATTTTACCAACTTTGTGCAG+GGG | - | chr6.1:64729917-64729936 | MS.gene042920:intron | 35.0% |
| ! | CATTTTACCAACTTTGTGCA+GGG | - | chr6.1:64729916-64729935 | MS.gene042920:intron | 35.0% |
| ! | GAAAATTGTATCACCCCTTT+TGG | + | chr6.1:64728674-64728693 | None:intergenic | 35.0% |
| ! | GTACCGACAAATATGATTGA+AGG | - | chr6.1:64732252-64732271 | MS.gene042920:intron | 35.0% |
| ! | TATGTTTGGCGGATAGTTAA+TGG | - | chr6.1:64733137-64733156 | MS.gene042920:intron | 35.0% |
| ! | TGGTGATGAGAAATGTTTGA+GGG | - | chr6.1:64728630-64728649 | MS.gene042920:CDS | 35.0% |
| !! | AATCATTTTTCCACTAGGAG+GGG | - | chr6.1:64729543-64729562 | MS.gene042920:intron | 35.0% |
| !! | AGATTGGCTAGCAATTTTCT+TGG | - | chr6.1:64730559-64730578 | MS.gene042920:intron | 35.0% |
| !! | AGGTATTGGATCATATGATG+AGG | - | chr6.1:64728575-64728594 | MS.gene042920:CDS | 35.0% |
| !! | ATGAGGCTTTGAATAAAGAC+AGG | - | chr6.1:64731458-64731477 | MS.gene042920:intron | 35.0% |
| !! | TACAATTTTAGAGAGGCAGT+TGG | + | chr6.1:64733609-64733628 | None:intergenic | 35.0% |
| !! | TAGAGAAGTACTAGAGAGAT+TGG | - | chr6.1:64730543-64730562 | MS.gene042920:intron | 35.0% |
| !! | TGGTCTCTTGATTGTTTTGT+TGG | - | chr6.1:64729212-64729231 | MS.gene042920:intron | 35.0% |
| !!! | ATCTTCTCCTCTTTTTCAAC+GGG | + | chr6.1:64728445-64728464 | None:intergenic | 35.0% |
| !!! | ATTGGCTTTTTGGAACCAAA+AGG | - | chr6.1:64728656-64728675 | MS.gene042920:CDS | 35.0% |
| !!! | CCTATTTTTAAGGGTCTGTT+TGG | - | chr6.1:64730861-64730880 | MS.gene042920:intron | 35.0% |
| !!! | TTGGCTTTTTGGAACCAAAA+GGG | - | chr6.1:64728657-64728676 | MS.gene042920:CDS | 35.0% |
| AAACCGCATGATCAAGAGAA+TGG | + | chr6.1:64732090-64732109 | None:intergenic | 40.0% | |
| AAGATTGAAGCTTGCATAGC+TGG | - | chr6.1:64732878-64732897 | MS.gene042920:intron | 40.0% | |
| AAGCTAACCTGAAGAGCTTA+TGG | + | chr6.1:64732481-64732500 | None:intergenic | 40.0% | |
| ACAAGGTTTATGGGATGGAT+TGG | - | chr6.1:64730115-64730134 | MS.gene042920:intron | 40.0% | |
| ACCATTTAGAGGGAGAAGAA+GGG | - | chr6.1:64728414-64728433 | MS.gene042920:CDS | 40.0% | |
| AGGTGCAGCAATTACTCTTA+AGG | - | chr6.1:64732756-64732775 | MS.gene042920:intron | 40.0% | |
| AGTGTTGTCATCATCATCAC+CGG | - | chr6.1:64728476-64728495 | MS.gene042920:CDS | 40.0% | |
| CTATACTGGACCACAATGAA+GGG | + | chr6.1:64729317-64729336 | None:intergenic | 40.0% | |
| CTTCCGCTGTTAGAGAATAA+AGG | + | chr6.1:64730057-64730076 | None:intergenic | 40.0% | |
| GCTAATGGCTACAAGGTTTA+TGG | - | chr6.1:64730105-64730124 | MS.gene042920:intron | 40.0% | |
| GCTATGCAAGCTTCAATCTT+TGG | + | chr6.1:64732878-64732897 | None:intergenic | 40.0% | |
| GGAAAACGGAAAAATAAGGC+AGG | - | chr6.1:64729113-64729132 | MS.gene042920:CDS | 40.0% | |
| GGCAGCAATAATGATGCTAT+TGG | + | chr6.1:64733366-64733385 | None:intergenic | 40.0% | |
| GGGACGTATAAAGAGTTAGA+AGG | - | chr6.1:64731767-64731786 | MS.gene042920:intron | 40.0% | |
| TACCATTTAGAGGGAGAAGA+AGG | - | chr6.1:64728413-64728432 | MS.gene042920:CDS | 40.0% | |
| TATGTGGCTGTTGTAAACTC+CGG | + | chr6.1:64730462-64730481 | None:intergenic | 40.0% | |
| TATTCAAAGCCTCATCTGTG+AGG | + | chr6.1:64731453-64731472 | None:intergenic | 40.0% | |
| TCAGTGATATCCTCTCTTTC+AGG | + | chr6.1:64733702-64733721 | None:intergenic | 40.0% | |
| TCATATGATGAGGAGGGAAT+TGG | - | chr6.1:64728585-64728604 | MS.gene042920:CDS | 40.0% | |
| TCTATAACTAAGGCCCTGTT+TGG | - | chr6.1:64732154-64732173 | MS.gene042920:intron | 40.0% | |
| TGATCATGCGGTTTCTGATT+TGG | - | chr6.1:64732096-64732115 | MS.gene042920:CDS | 40.0% | |
| TGCACATGGATGTACATGTT+TGG | - | chr6.1:64730595-64730614 | MS.gene042920:intron | 40.0% | |
| TGGTTGAGGGAAAAAACTGA+AGG | + | chr6.1:64729679-64729698 | None:intergenic | 40.0% | |
| TGTCCATTCTCTTGATCATG+CGG | - | chr6.1:64732084-64732103 | MS.gene042920:intron | 40.0% | |
| TTTCAAAAAATGGTCCGCCA+CGG | + | chr6.1:64729477-64729496 | None:intergenic | 40.0% | |
| ! | ACTTGAGCTAGCTTATCTTC+TGG | - | chr6.1:64730888-64730907 | MS.gene042920:intron | 40.0% |
| ! | CTGATGTCTGCTCATCTTTT+AGG | - | chr6.1:64732031-64732050 | MS.gene042920:intron | 40.0% |
| ! | TATGGTTGCCATGAAGGTAT+TGG | - | chr6.1:64728561-64728580 | MS.gene042920:CDS | 40.0% |
| ! | TGAGACTTCTCATCCGTTTT+TGG | - | chr6.1:64732931-64732950 | MS.gene042920:intron | 40.0% |
| !! | GTTTATGGGATGGATTGGAT+TGG | - | chr6.1:64730120-64730139 | MS.gene042920:intron | 40.0% |
| !! | TCTGCTCATCTTTTAGGTCA+TGG | - | chr6.1:64732037-64732056 | MS.gene042920:intron | 40.0% |
| !!! | ATAAGGAGAGTTTTGGAGGA+TGG | - | chr6.1:64728610-64728629 | MS.gene042920:CDS | 40.0% |
| !!! | CATAACCTTTGGGACTGTTT+TGG | - | chr6.1:64730911-64730930 | MS.gene042920:intron | 40.0% |
| !!! | TGGCTTTTTGGAACCAAAAG+GGG | - | chr6.1:64728658-64728677 | MS.gene042920:CDS | 40.0% |
| !!! | TTGAGGGAGTATTGGCTTTT+TGG | - | chr6.1:64728646-64728665 | MS.gene042920:CDS | 40.0% |
| AAGATTGTGCCATGGAAGAG+TGG | - | chr6.1:64728526-64728545 | MS.gene042920:CDS | 45.0% | |
| AAGTCATGGTCCCTTCATTG+TGG | - | chr6.1:64729304-64729323 | MS.gene042920:CDS | 45.0% | |
| ACAGATATTGACACGGACAC+TGG | + | chr6.1:64728995-64729014 | None:intergenic | 45.0% | |
| ACATTCACATCACCTGCAGT+TGG | - | chr6.1:64732905-64732924 | MS.gene042920:intron | 45.0% | |
| ACCCTTCTTCTCCCTCTAAA+TGG | + | chr6.1:64728418-64728437 | None:intergenic | 45.0% | |
| AGGATACTTGCTCGTGTGTT+TGG | - | chr6.1:64731478-64731497 | MS.gene042920:intron | 45.0% | |
| ATCAGCAGCATCACCTATAC+TGG | + | chr6.1:64729331-64729350 | None:intergenic | 45.0% | |
| CCTATACTGGACCACAATGA+AGG | + | chr6.1:64729318-64729337 | None:intergenic | 45.0% | |
| CCTTCATTGTGGTCCAGTAT+AGG | - | chr6.1:64729315-64729334 | MS.gene042920:CDS | 45.0% | |
| GAGTGTCCATAGCAGAAACA+TGG | + | chr6.1:64732733-64732752 | None:intergenic | 45.0% | |
| GCAAAGCAGCTGAATGCTAA+TGG | - | chr6.1:64730090-64730109 | MS.gene042920:intron | 45.0% | |
| GCTGAATGCTAATGGCTACA+AGG | - | chr6.1:64730098-64730117 | MS.gene042920:intron | 45.0% | |
| GGATCACTTAGAGTACGAAC+CGG | - | chr6.1:64733483-64733502 | MS.gene042920:CDS | 45.0% | |
| GGTATCACCCGTTGAAAAAG+AGG | - | chr6.1:64728435-64728454 | MS.gene042920:CDS | 45.0% | |
| GGTTCGTACTCTAAGTGATC+CGG | + | chr6.1:64733484-64733503 | None:intergenic | 45.0% | |
| GTCTGTCAGTGCTTCTTAGA+TGG | - | chr6.1:64732413-64732432 | MS.gene042920:intron | 45.0% | |
| GTGCCGTGTAGAACAAGAAA+TGG | + | chr6.1:64733567-64733586 | None:intergenic | 45.0% | |
| TAGCAGAAACATGGAAGACC+AGG | + | chr6.1:64732724-64732743 | None:intergenic | 45.0% | |
| TCGCGTATCGTGCAATATTG+TGG | - | chr6.1:64729745-64729764 | MS.gene042920:intron | 45.0% | |
| TGAAGCACAGACACGTACAT+CGG | - | chr6.1:64730702-64730721 | MS.gene042920:intron | 45.0% | |
| TGAGGAGGGAATTGGCTATA+AGG | - | chr6.1:64728593-64728612 | MS.gene042920:CDS | 45.0% | |
| TGATTGTTGCGCAGTGTATG+TGG | + | chr6.1:64730478-64730497 | None:intergenic | 45.0% | |
| TGGCTACAAGGTTTATGGGA+TGG | - | chr6.1:64730110-64730129 | MS.gene042920:intron | 45.0% | |
| TGGTATGTCGATGAATCTCC+AGG | - | chr6.1:64732116-64732135 | MS.gene042920:intron | 45.0% | |
| TGTCATCATCATCACCGGAA+AGG | - | chr6.1:64728481-64728500 | MS.gene042920:CDS | 45.0% | |
| TGTTGGTATGGTTGCCATGA+AGG | - | chr6.1:64728555-64728574 | MS.gene042920:CDS | 45.0% | |
| TTCCATGGCACAATCTTTGC+CGG | + | chr6.1:64728523-64728542 | None:intergenic | 45.0% | |
| TTCTGCTATGGACACTCAAC+AGG | - | chr6.1:64732736-64732755 | MS.gene042920:intron | 45.0% | |
| TTGACCTAGTTAACCGACCT+AGG | - | chr6.1:64731425-64731444 | MS.gene042920:intron | 45.0% | |
| TTTCTTGTTCTACACGGCAC+TGG | - | chr6.1:64733567-64733586 | MS.gene042920:CDS | 45.0% | |
| ! | GCGGATAGTTAATGGATCGA+AGG | - | chr6.1:64733145-64733164 | MS.gene042920:intron | 45.0% |
| ! | GGTCTTCCATGTTTCTGCTA+TGG | - | chr6.1:64732724-64732743 | MS.gene042920:intron | 45.0% |
| ! | TGCATGGCCTTAATGAACAC+AGG | - | chr6.1:64729954-64729973 | MS.gene042920:CDS | 45.0% |
| ! | TGTGTGTATTGTGCTGGTGT+TGG | + | chr6.1:64732307-64732326 | None:intergenic | 45.0% |
| ! | TTTTTCCACTAGGAGGGGTT+TGG | - | chr6.1:64729548-64729567 | MS.gene042920:intron | 45.0% |
| !! | CTAAGAAGCACTGACAGACA+TGG | + | chr6.1:64732412-64732431 | None:intergenic | 45.0% |
| !! | GACTTCTCATCCGTTTTTGG+TGG | - | chr6.1:64732934-64732953 | MS.gene042920:intron | 45.0% |
| !! | GCTCATCTTTTAGGTCATGG+TGG | - | chr6.1:64732040-64732059 | MS.gene042920:intron | 45.0% |
| !! | GGCTATAAGGAGAGTTTTGG+AGG | - | chr6.1:64728606-64728625 | MS.gene042920:CDS | 45.0% |
| !!! | TTTTATTAACTAAAATATTA+AGG | - | chr6.1:64733185-64733204 | MS.gene042920:intron | 5.0% |
| AATCAGACACGCCTAATCCG+AGG | + | chr6.1:64728861-64728880 | None:intergenic | 50.0% | |
| ACAAGTCCCCTGCACAAAGT+TGG | + | chr6.1:64729926-64729945 | None:intergenic | 50.0% | |
| AGTGATCCGGTGCATACCAA+CGG | + | chr6.1:64733471-64733490 | None:intergenic | 50.0% | |
| AGTTAGAAGGAGGAGGTCTC+GGG | - | chr6.1:64731780-64731799 | MS.gene042920:intron | 50.0% | |
| ATTGTGCCATGGAAGAGTGG+TGG | - | chr6.1:64728529-64728548 | MS.gene042920:CDS | 50.0% | |
| CACCATGGACAAAATTGCCG+TGG | - | chr6.1:64729457-64729476 | MS.gene042920:intron | 50.0% | |
| CACGAGTGTGTGTATTGTGC+TGG | + | chr6.1:64732313-64732332 | None:intergenic | 50.0% | |
| CATGGACAAAATTGCCGTGG+CGG | - | chr6.1:64729460-64729479 | MS.gene042920:intron | 50.0% | |
| CGATACGCGATTGACAACAC+TGG | + | chr6.1:64729735-64729754 | None:intergenic | 50.0% | |
| CGCGAAATATTCAGACCCGT+TGG | - | chr6.1:64733452-64733471 | MS.gene042920:CDS | 50.0% | |
| GAAGTCTCAACTCCAACTGC+AGG | + | chr6.1:64732920-64732939 | None:intergenic | 50.0% | |
| GAGTTAGAAGGAGGAGGTCT+CGG | - | chr6.1:64731779-64731798 | MS.gene042920:intron | 50.0% | |
| GCTCTCCAAAACAGTCCCAA+AGG | + | chr6.1:64730919-64730938 | None:intergenic | 50.0% | |
| GGAATCGAATTCAGTCCCTC+CGG | - | chr6.1:64730440-64730459 | MS.gene042920:intron | 50.0% | |
| TAACACTGACACATCGACGC+TGG | + | chr6.1:64732372-64732391 | None:intergenic | 50.0% | |
| TATTTCGCGATGAGAGCCTC+CGG | + | chr6.1:64733441-64733460 | None:intergenic | 50.0% | |
| TCACTTGCGCTAGAACTCAG+TGG | - | chr6.1:64730495-64730514 | MS.gene042920:intron | 50.0% | |
| TGGCTGTTGTAAACTCCGGA+GGG | + | chr6.1:64730458-64730477 | None:intergenic | 50.0% | |
| TGTTGGCCACTAACACGTGT+CGG | + | chr6.1:64732290-64732309 | None:intergenic | 50.0% | |
| TTAGGTCATGGTGGCAGTGA+TGG | - | chr6.1:64732049-64732068 | MS.gene042920:intron | 50.0% | |
| TTCCGGCAAAGATTGTGCCA+TGG | - | chr6.1:64728518-64728537 | MS.gene042920:CDS | 50.0% | |
| !! | AAGCACTGACAGACATGGAC+AGG | + | chr6.1:64732407-64732426 | None:intergenic | 50.0% |
| ACACCACCACCACTCTTCCA+TGG | + | chr6.1:64728538-64728557 | None:intergenic | 55.0% | |
| ACCTAGGCACCTCACAGATG+AGG | - | chr6.1:64731441-64731460 | MS.gene042920:intron | 55.0% | |
| ATTTCGCGATGAGAGCCTCC+GGG | + | chr6.1:64733440-64733459 | None:intergenic | 55.0% | |
| GAAAGCCAAACCCCTCCTAG+TGG | + | chr6.1:64729556-64729575 | None:intergenic | 55.0% | |
| GAGGTCTCGGGTTCAATTCC+CGG | - | chr6.1:64731792-64731811 | MS.gene042920:intron | 55.0% | |
| GGTGCCTAGGTCGGTTAACT+AGG | + | chr6.1:64731432-64731451 | None:intergenic | 55.0% | |
| GTGATCCGGTGCATACCAAC+GGG | + | chr6.1:64733470-64733489 | None:intergenic | 55.0% | |
| GTGGCTGTTGTAAACTCCGG+AGG | + | chr6.1:64730459-64730478 | None:intergenic | 55.0% | |
| GTTGCCAGTTTCTCGAGACC+CGG | - | chr6.1:64733419-64733438 | MS.gene042920:CDS | 55.0% | |
| TCAGACCCGTTGGTATGCAC+CGG | - | chr6.1:64733462-64733481 | MS.gene042920:CDS | 55.0% | |
| TCATCATCACCGGAAAGGCG+CGG | - | chr6.1:64728486-64728505 | MS.gene042920:CDS | 55.0% | |
| ! | CATCTGTGAGGTGCCTAGGT+CGG | + | chr6.1:64731441-64731460 | None:intergenic | 55.0% |
| ! | CGCCACGGCAATTTTGTCCA+TGG | + | chr6.1:64729462-64729481 | None:intergenic | 55.0% |
| !! | GAGTGGTGGTGGTGTTGGTA+TGG | - | chr6.1:64728543-64728562 | MS.gene042920:CDS | 55.0% |
| !! | TGGAAGAGTGGTGGTGGTGT+TGG | - | chr6.1:64728538-64728557 | MS.gene042920:CDS | 55.0% |
| AGCTAGGCACGGACACTCCT+CGG | - | chr6.1:64728841-64728860 | MS.gene042920:intron | 60.0% | |
| CACGGACACTGGACACGACA+CGG | + | chr6.1:64728984-64729003 | None:intergenic | 60.0% | |
| CGGTGTCCGACACGTGTTAG+TGG | - | chr6.1:64732281-64732300 | MS.gene042920:intron | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | - | chr6.1:64728847-64728866 | MS.gene042920:intron | 60.0% | |
| GGTGGCAGTGATGGTCTGCA+TGG | - | chr6.1:64732058-64732077 | MS.gene042920:intron | 60.0% | |
| GTGCCATGGAAGAGTGGTGG+TGG | - | chr6.1:64728532-64728551 | MS.gene042920:CDS | 60.0% | |
| ! | GCCTCATCTGTGAGGTGCCT+AGG | + | chr6.1:64731445-64731464 | None:intergenic | 60.0% |
| GCCAGTTTCTCGAGACCCGG+AGG | - | chr6.1:64733422-64733441 | MS.gene042920:CDS | 65.0% | |
| GCCTCCGGGTCTCGAGAAAC+TGG | + | chr6.1:64733426-64733445 | None:intergenic | 65.0% | |
| ! | TCATCACCGGAAAGGCGCGG+TGG | - | chr6.1:64728489-64728508 | MS.gene042920:CDS | 65.0% |
| AGGCGCGGTGGTGCGCGTTC+CGG | - | chr6.1:64728501-64728520 | MS.gene042920:CDS | 75.0% | |
| CGCGCACCACCGCGCCTTTC+CGG | + | chr6.1:64728498-64728517 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 64728310 | 64733755 | 64728310 | ID=MS.gene042920 |
| chr6.1 | mRNA | 64728310 | 64733755 | 64728310 | ID=MS.gene042920.t1;Parent=MS.gene042920 |
| chr6.1 | exon | 64733337 | 64733755 | 64733337 | ID=MS.gene042920.t1.exon1;Parent=MS.gene042920.t1 |
| chr6.1 | CDS | 64733337 | 64733755 | 64733337 | ID=cds.MS.gene042920.t1;Parent=MS.gene042920.t1 |
| chr6.1 | exon | 64732090 | 64732128 | 64732090 | ID=MS.gene042920.t1.exon2;Parent=MS.gene042920.t1 |
| chr6.1 | CDS | 64732090 | 64732128 | 64732090 | ID=cds.MS.gene042920.t1;Parent=MS.gene042920.t1 |
| chr6.1 | exon | 64731924 | 64731994 | 64731924 | ID=MS.gene042920.t1.exon3;Parent=MS.gene042920.t1 |
| chr6.1 | CDS | 64731924 | 64731994 | 64731924 | ID=cds.MS.gene042920.t1;Parent=MS.gene042920.t1 |
| chr6.1 | exon | 64729948 | 64730012 | 64729948 | ID=MS.gene042920.t1.exon4;Parent=MS.gene042920.t1 |
| chr6.1 | CDS | 64729948 | 64730012 | 64729948 | ID=cds.MS.gene042920.t1;Parent=MS.gene042920.t1 |
| chr6.1 | exon | 64729288 | 64729377 | 64729288 | ID=MS.gene042920.t1.exon5;Parent=MS.gene042920.t1 |
| chr6.1 | CDS | 64729288 | 64729377 | 64729288 | ID=cds.MS.gene042920.t1;Parent=MS.gene042920.t1 |
| chr6.1 | exon | 64729110 | 64729202 | 64729110 | ID=MS.gene042920.t1.exon6;Parent=MS.gene042920.t1 |
| chr6.1 | CDS | 64729110 | 64729202 | 64729110 | ID=cds.MS.gene042920.t1;Parent=MS.gene042920.t1 |
| chr6.1 | exon | 64728310 | 64728711 | 64728310 | ID=MS.gene042920.t1.exon7;Parent=MS.gene042920.t1 |
| chr6.1 | CDS | 64728310 | 64728711 | 64728310 | ID=cds.MS.gene042920.t1;Parent=MS.gene042920.t1 |
| Gene Sequence |
| Protein sequence |
