AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72606


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72606.t1 MTR_6g071475 96.173 392 13 2 1 391 1 391 0.0 773
MS.gene72606.t1 MTR_3g109870 50.325 308 122 5 91 391 72 355 4.42e-101 304
MS.gene72606.t1 MTR_4g089170 36.620 284 166 9 118 390 43 323 4.09e-43 153
MS.gene72606.t1 MTR_6g025610 36.429 280 159 9 122 388 52 325 3.94e-42 150
MS.gene72606.t1 MTR_6g018490 35.842 279 162 8 122 388 62 335 2.62e-41 149
MS.gene72606.t1 MTR_1g088470 35.836 293 161 11 115 391 11 292 1.33e-39 144
MS.gene72606.t1 MTR_1g110670 34.028 288 180 8 112 390 71 357 6.51e-38 140
MS.gene72606.t1 MTR_7g007260 32.635 334 195 11 81 388 7 336 1.38e-36 136
MS.gene72606.t1 MTR_7g108770 34.247 292 178 9 106 388 2 288 5.91e-36 134
MS.gene72606.t1 MTR_7g007260 31.024 332 191 9 81 388 7 324 1.28e-35 133
MS.gene72606.t1 MTR_7g007260 31.627 332 188 10 81 388 7 323 5.13e-35 132
MS.gene72606.t1 MTR_4g127220 33.916 286 172 8 118 391 35 315 6.56e-35 131
MS.gene72606.t1 MTR_5g056550 34.483 290 172 12 114 390 107 391 3.25e-34 131
MS.gene72606.t1 MTR_1g115535 31.655 278 179 6 122 390 18 293 6.66e-33 125
MS.gene72606.t1 MTR_1g115535 31.655 278 179 6 122 390 22 297 7.30e-33 125
MS.gene72606.t1 MTR_6g084420 29.969 327 204 10 85 389 14 337 4.59e-31 121
MS.gene72606.t1 MTR_5g056550 31.707 287 151 10 114 390 107 358 1.87e-25 106
MS.gene72606.t1 MTR_1g095110 30.634 284 173 10 120 387 37 312 8.21e-24 101
MS.gene72606.t1 MTR_5g056550 35.246 122 73 4 114 230 107 227 6.26e-12 65.5
MS.gene72606.t1 MTR_5g056550 35.484 124 70 5 114 230 107 227 8.02e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72606.t1 AT1G73480 61.990 392 124 6 14 391 83 463 1.93e-167 477
MS.gene72606.t1 AT1G18360 68.106 301 93 2 94 391 82 382 5.96e-149 427
MS.gene72606.t1 AT5G11650 60.727 275 108 0 117 391 105 379 5.48e-124 363
MS.gene72606.t1 AT5G11650 60.104 193 77 0 117 309 105 297 1.73e-83 257
MS.gene72606.t1 AT2G39420 36.918 279 165 7 122 391 19 295 7.35e-43 152
MS.gene72606.t1 AT2G39410 35.252 278 169 5 122 390 19 294 7.37e-40 144
MS.gene72606.t1 AT5G16120 34.277 318 185 11 88 389 29 338 2.06e-39 144
MS.gene72606.t1 AT5G16120 34.277 318 185 11 88 389 29 338 2.06e-39 144
MS.gene72606.t1 AT5G16120 34.277 318 185 11 88 389 47 356 2.16e-39 144
MS.gene72606.t1 AT1G11090 34.471 293 162 13 117 390 33 314 3.21e-39 143
MS.gene72606.t1 AT5G16120 34.385 317 184 11 88 388 61 369 3.63e-39 144
MS.gene72606.t1 AT1G52760 33.217 286 174 8 118 391 44 324 1.44e-37 139
MS.gene72606.t1 AT2G39400 33.571 280 175 5 120 390 11 288 2.88e-37 137
MS.gene72606.t1 AT3G55180 34.286 280 170 9 122 390 13 289 1.55e-34 130
MS.gene72606.t1 AT5G14980 30.797 276 182 6 123 390 41 315 1.85e-31 122
MS.gene72606.t1 AT3G55190 31.488 289 172 9 120 391 17 296 1.07e-30 120
MS.gene72606.t1 AT1G77420 32.203 354 211 13 63 391 30 379 1.10e-29 118
MS.gene72606.t1 AT3G62860 31.900 279 178 7 122 391 17 292 2.69e-29 116
MS.gene72606.t1 AT2G47630 31.786 280 179 7 122 391 17 294 4.59e-29 116
MS.gene72606.t1 AT3G62860 31.799 239 153 5 161 391 13 249 1.20e-26 108
MS.gene72606.t1 AT2G47630 31.799 239 153 5 161 391 13 249 5.85e-26 106
MS.gene72606.t1 AT2G47630 31.933 238 152 5 161 390 33 268 6.30e-26 107
MS.gene72606.t1 AT5G19290 29.496 278 186 8 122 390 40 316 1.07e-25 106
MS.gene72606.t1 AT2G39400 28.372 215 146 4 120 328 11 223 3.27e-17 80.9
MS.gene72606.t1 AT2G39410 44.156 77 42 1 122 197 19 95 6.53e-12 62.8

Find 78 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGCACCACCGCGCCTTTC+CGG 0.142261 6.4:+48882796 None:intergenic
GCTAATGGCTACAAGGTTTA+TGG 0.174876 6.4:-48881342 MS.gene72606:CDS
TCAGTGATATCCTCTCTTTC+AGG 0.185889 6.4:+48877448 None:intergenic
GCTATGCAAGCTTCAATCTT+TGG 0.224210 6.4:+48878535 None:intergenic
GGTCTTCCATGTTTCTGTTA+TGG 0.268098 6.4:-48878691 MS.gene72606:CDS
AGAAATGTTTGAGGGAATAT+TGG 0.288201 6.4:-48882656 MS.gene72606:CDS
TGAGGAGGGAATTGGCTATA+AGG 0.289591 6.4:-48882701 MS.gene72606:CDS
TGATCATGCAGTTGCTGATT+TGG 0.292356 6.4:-48879354 MS.gene72606:intron
ACCCTTCTTCGCCCTCTAAA+TGG 0.298051 6.4:+48882876 None:intergenic
AGGCGCGGTGGTGCGCGTTC+CGG 0.319890 6.4:-48882790 MS.gene72606:CDS
ATTGGCTATAAGGAGAGTTT+TGG 0.320255 6.4:-48882691 MS.gene72606:CDS
GAAAATTGTATCACCCCTTT+TGG 0.323417 6.4:+48882623 None:intergenic
CTCCTCTTTCTGTTAAGATT+AGG 0.351584 6.4:-48882587 MS.gene72606:intron
TTCCATGGCACAATCTTTGC+CGG 0.361074 6.4:+48882771 None:intergenic
GTTAATATCAGCTATGGTTA+TGG 0.380117 6.4:-48882910 MS.gene72606:CDS
CTATGCAAGCTTCAATCTTT+GGG 0.383116 6.4:+48878536 None:intergenic
GCCTCCGGGTCTCGAGAAAC+TGG 0.383816 6.4:+48877724 None:intergenic
GCAAAGCAGCTGAATGCTAA+TGG 0.387246 6.4:-48881357 MS.gene72606:CDS
CATATGATCCAACACCTTCA+TGG 0.403235 6.4:+48882725 None:intergenic
CTAATGGCTACAAGGTTTAT+GGG 0.405878 6.4:-48881341 MS.gene72606:CDS
ACAAGGTTTATGGGATGGAT+TGG 0.430990 6.4:-48881332 MS.gene72606:CDS
TCATATGATGAGGAGGGAAT+TGG 0.431514 6.4:-48882709 MS.gene72606:CDS
AAGATTGAAGCTTGCATAGC+TGG 0.434921 6.4:-48878532 MS.gene72606:CDS
AGGTGCAGCAATTACTCTTA+AGG 0.440332 6.4:-48878659 MS.gene72606:intron
GGACTTGTTATTCTTATGCA+TGG 0.445658 6.4:-48881508 MS.gene72606:CDS
TACCTAATCTTAACAGAAAG+AGG 0.448951 6.4:+48882585 None:intergenic
TACCATTTAGAGGGCGAAGA+AGG 0.458553 6.4:-48882878 MS.gene72606:CDS
TGTAATTCAGCATACAAGAA+AGG 0.463542 6.4:-48877751 MS.gene72606:CDS
GTGCCGTGTAGAACAAGAAA+TGG 0.464730 6.4:+48877583 None:intergenic
TTAGGTCATGGTGGTAGTGA+TGG 0.466999 6.4:-48879401 MS.gene72606:intron
TGTTGGTATGGTTGCCATGA+AGG 0.467747 6.4:-48882739 MS.gene72606:CDS
GAAGAGTGGTGGTGTTGGTA+TGG 0.475481 6.4:-48882751 MS.gene72606:CDS
TTCTGTTATGGACACTCGAC+AGG 0.497053 6.4:-48878679 MS.gene72606:CDS
TTTCTTGTTCTACACGGCAC+TGG 0.504024 6.4:-48877580 MS.gene72606:CDS
TATTTCGCGATGAGAGCCTC+CGG 0.510804 6.4:+48877709 None:intergenic
GTAATTCAGCATACAAGAAA+GGG 0.513673 6.4:-48877750 MS.gene72606:CDS
GGCAGTAGTAATGATGCTAT+TGG 0.515019 6.4:+48877784 None:intergenic
CGCGAAATATTCAGACCCAT+TGG 0.521881 6.4:-48877695 MS.gene72606:CDS
AAAAGTATCAAATTGTATGA+AGG 0.521940 6.4:-48877496 MS.gene72606:CDS
AAGGTTATAACTGAAAATCC+TGG 0.529580 6.4:-48878712 MS.gene72606:CDS
GCGATCCTGTGCATACCAAT+GGG 0.530438 6.4:+48877680 None:intergenic
CAACTGCATGATCAAGAGAA+TGG 0.540138 6.4:+48879363 None:intergenic
AGCGATCCTGTGCATACCAA+TGG 0.540907 6.4:+48877679 None:intergenic
ATGTTGATGAGAAATGTTTG+AGG 0.547127 6.4:-48882665 MS.gene72606:CDS
TGGCTACAAGGTTTATGGGA+TGG 0.547371 6.4:-48881337 MS.gene72606:CDS
GTTTATGGGATGGATTGGAT+TGG 0.548054 6.4:-48881327 MS.gene72606:intron
CCAACACCACCACTCTTCCA+TGG 0.554560 6.4:+48882756 None:intergenic
TATGGTTGCCATGAAGGTGT+TGG 0.560080 6.4:-48882733 MS.gene72606:CDS
GAAGTCTCAACTCCAACTGC+AGG 0.560499 6.4:+48878493 None:intergenic
TCAGACCCATTGGTATGCAC+AGG 0.565095 6.4:-48877685 MS.gene72606:CDS
GCTGAATGCTAATGGCTACA+AGG 0.567854 6.4:-48881349 MS.gene72606:CDS
TCACTGAAGATATAATTCAA+TGG 0.568890 6.4:-48877432 MS.gene72606:CDS
ACAGAAAATATTCATCGAGA+AGG 0.571510 6.4:-48878731 MS.gene72606:intron
CCATGGAAGAGTGGTGGTGT+TGG 0.574587 6.4:-48882756 MS.gene72606:CDS
GTTGCCAGTTTCTCGAGACC+CGG 0.579629 6.4:-48877728 MS.gene72606:CDS
GGATCGCTTAGAGTACGAAC+CGG 0.580974 6.4:-48877664 MS.gene72606:CDS
TGCATGGTCTTAATGAACAC+AGG 0.585119 6.4:-48881492 MS.gene72606:intron
ACCATTTAGAGGGCGAAGAA+GGG 0.585834 6.4:-48882877 MS.gene72606:CDS
ACATTCACATCACCTGCAGT+TGG 0.588536 6.4:-48878505 MS.gene72606:CDS
AGTGTTGTCATCATCATCAC+CGG 0.591129 6.4:-48882815 MS.gene72606:CDS
ATTTCGCGATGAGAGCCTCC+GGG 0.593930 6.4:+48877710 None:intergenic
TGTTGATGAGAAATGTTTGA+GGG 0.594287 6.4:-48882664 MS.gene72606:CDS
GGTGGTAGTGATGGTTTGCA+TGG 0.601763 6.4:-48879392 MS.gene72606:CDS
TGTTGGATCATATGATGAGG+AGG 0.602319 6.4:-48882716 MS.gene72606:CDS
GATTCGAAGAATCTCATAGC+CGG 0.604669 6.4:+48877645 None:intergenic
TAACAGAAACATGGAAGACC+AGG 0.605162 6.4:+48878694 None:intergenic
ACTATTTGAACCTGAAAGAG+AGG 0.606799 6.4:-48877458 MS.gene72606:CDS
GTTGGATCATATGATGAGGA+GGG 0.615904 6.4:-48882715 MS.gene72606:CDS
GCCAGTTTCTCGAGACCCGG+AGG 0.635519 6.4:-48877725 MS.gene72606:CDS
TTCCGGCAAAGATTGTGCCA+TGG 0.636721 6.4:-48882773 MS.gene72606:CDS
TGTCATCATCATCACCGGAA+AGG 0.643505 6.4:-48882810 MS.gene72606:CDS
AAGATTGTGCCATGGAAGAG+TGG 0.646198 6.4:-48882765 MS.gene72606:CDS
GTTCCATTTCTTGTTCTACA+CGG 0.650148 6.4:-48877586 MS.gene72606:CDS
GAGTGTCCATAACAGAAACA+TGG 0.657604 6.4:+48878685 None:intergenic
TCATCATCACCGGAAAGGCG+CGG 0.663566 6.4:-48882805 MS.gene72606:CDS
TCATCACCGGAAAGGCGCGG+TGG 0.687802 6.4:-48882802 MS.gene72606:CDS
AGGTGTTGGATCATATGATG+AGG 0.726895 6.4:-48882719 MS.gene72606:CDS
ATTGTGCCATGGAAGAGTGG+TGG 0.729461 6.4:-48882762 MS.gene72606:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTTATCTATAGA+AGG - chr6.4:48878135-48878154 MS.gene72606:intron 10.0%
!!! CTTAATTATGTTTTTTATAT+AGG + chr6.4:48880803-48880822 None:intergenic 10.0%
!! AAATTGATTATGAATAAAAG+TGG - chr6.4:48880491-48880510 MS.gene72606:intron 15.0%
!! GAAGAAATAAAAAATTAACA+AGG + chr6.4:48878575-48878594 None:intergenic 15.0%
!! TAATTCAAAATTAATTGTCA+CGG + chr6.4:48880459-48880478 None:intergenic 15.0%
!! TCGTTATTAACTATAATATT+CGG - chr6.4:48882192-48882211 MS.gene72606:intron 15.0%
!! TTCATTATTATCCATATTAT+AGG - chr6.4:48881826-48881845 MS.gene72606:intron 15.0%
!! TTGGAATATATATATAACTA+AGG - chr6.4:48881091-48881110 MS.gene72606:intron 15.0%
!! TTTATATCTTATATGAAAAC+AGG - chr6.4:48881460-48881479 MS.gene72606:intron 15.0%
!!! AATAGTTTTACATAAAAACA+AGG + chr6.4:48878362-48878381 None:intergenic 15.0%
!!! ATCATAATTTTTTAAACACA+AGG + chr6.4:48877917-48877936 None:intergenic 15.0%
!!! TTGTGATTTATATTTAAGTT+TGG - chr6.4:48881581-48881600 MS.gene72606:intron 15.0%
!! AAAATTATGATTTATGAGCT+AGG - chr6.4:48877926-48877945 MS.gene72606:intron 20.0%
!! AATCACTTAAATCAAAAAGT+TGG + chr6.4:48881968-48881987 None:intergenic 20.0%
!! AATGACTATCATGTAAAAAA+AGG + chr6.4:48880055-48880074 None:intergenic 20.0%
!! ATTAGACAATAAAACATACA+AGG + chr6.4:48880905-48880924 None:intergenic 20.0%
!! CAAGCATACTAATTATAATT+TGG + chr6.4:48879104-48879123 None:intergenic 20.0%
!! CATGACTTAAATTAAGTTAA+GGG + chr6.4:48878393-48878412 None:intergenic 20.0%
!! GTTAGTTAATACAGTTAAAA+TGG + chr6.4:48882438-48882457 None:intergenic 20.0%
!! TAAATTGTGTTCAATATACA+TGG - chr6.4:48882238-48882257 MS.gene72606:intron 20.0%
!! TACATTATACACAATTCAAT+TGG + chr6.4:48881806-48881825 None:intergenic 20.0%
!! TCATATATAACATGATACTA+TGG + chr6.4:48882528-48882547 None:intergenic 20.0%
!! TTAAGATTAGGTATGTTTAT+AGG - chr6.4:48877820-48877839 MS.gene72606:intron 20.0%
!! TTCATAGAAAATGCTTTAAT+GGG + chr6.4:48879639-48879658 None:intergenic 20.0%
!! TTTATGTAAAACTATTTGAG+AGG - chr6.4:48878366-48878385 MS.gene72606:intron 20.0%
!! TTTGTGTTTGTAGTTAATTA+AGG - chr6.4:48879476-48879495 MS.gene72606:intron 20.0%
!!! AAAAGTATCAAATTGTATGA+AGG - chr6.4:48882899-48882918 MS.gene72606:CDS 20.0%
!!! ACTATTTTCATAATCTATCT+TGG + chr6.4:48879878-48879897 None:intergenic 20.0%
!!! ATATTTTACGACAATTTAGA+TGG - chr6.4:48882061-48882080 MS.gene72606:intron 20.0%
!!! ATCGATATTTTTACTTTTGA+AGG + chr6.4:48880660-48880679 None:intergenic 20.0%
!!! ATTGAGCATTTTAACATATA+GGG - chr6.4:48879702-48879721 MS.gene72606:intron 20.0%
!!! CGATTTTCTCAAATTATTAA+CGG - chr6.4:48878042-48878061 MS.gene72606:intron 20.0%
!!! TATCGATATAATTCTTTTAG+AGG + chr6.4:48882496-48882515 None:intergenic 20.0%
!!! TGTATGTTTTATTGTCTAAT+TGG - chr6.4:48880905-48880924 MS.gene72606:intron 20.0%
!!! TTTCTTATCTGAACAATTTT+TGG - chr6.4:48880273-48880292 MS.gene72606:intron 20.0%
!!! TTTTTTTGAAACTTACCTAT+AGG - chr6.4:48881764-48881783 MS.gene72606:intron 20.0%
! AACCATAATATACTTGTGTA+TGG + chr6.4:48882556-48882575 None:intergenic 25.0%
! AATATGTGATTAATTACGTC+TGG - chr6.4:48882097-48882116 MS.gene72606:intron 25.0%
! AGACTACAAATCATGATAAA+TGG + chr6.4:48882292-48882311 None:intergenic 25.0%
! AGTAGAAACTACACAAATAT+TGG + chr6.4:48879348-48879367 None:intergenic 25.0%
! ATATATTCCAACAAAATTCC+TGG + chr6.4:48881082-48881101 None:intergenic 25.0%
! ATCAGGAAAATGGAAAAATA+AGG - chr6.4:48878210-48878229 MS.gene72606:intron 25.0%
! ATGCTATAAGCTTATTCAAA+CGG - chr6.4:48881547-48881566 MS.gene72606:intron 25.0%
! ATTAGGTATGTTTATAGGTT+TGG - chr6.4:48877825-48877844 MS.gene72606:intron 25.0%
! CAAATTGAAATTAGCCAAAT+AGG + chr6.4:48879565-48879584 None:intergenic 25.0%
! CAACCATTATGATTATTATC+AGG + chr6.4:48878295-48878314 None:intergenic 25.0%
! CAATGCTCTTAATGAAAAAT+AGG + chr6.4:48877451-48877470 None:intergenic 25.0%
! CATGAAAACATAGTTAAATG+AGG - chr6.4:48882319-48882338 MS.gene72606:intron 25.0%
! CCATGACTTAAATTAAGTTA+AGG + chr6.4:48878394-48878413 None:intergenic 25.0%
! CCTTAACTTAATTTAAGTCA+TGG - chr6.4:48878391-48878410 MS.gene72606:intron 25.0%
! CTGATAATAATCATAATGGT+TGG - chr6.4:48878293-48878312 MS.gene72606:intron 25.0%
! CTTATCAAGGTTTCAAATAA+CGG + chr6.4:48878514-48878533 None:intergenic 25.0%
! CTTCACAATTTCATATTGTT+TGG + chr6.4:48880003-48880022 None:intergenic 25.0%
! CTTCATAGAAAATGCTTTAA+TGG + chr6.4:48879640-48879659 None:intergenic 25.0%
! GATAACCATATTAATTCCAA+GGG + chr6.4:48878719-48878738 None:intergenic 25.0%
! GATTAAAATCGTGGTTAATT+AGG + chr6.4:48882174-48882193 None:intergenic 25.0%
! GTTAATAACGATTAAAATCG+TGG + chr6.4:48882183-48882202 None:intergenic 25.0%
! GTTAATACAGTTAAAATGGA+TGG + chr6.4:48882434-48882453 None:intergenic 25.0%
! GTTTAATAACTTTGCAATGA+TGG - chr6.4:48882015-48882034 MS.gene72606:intron 25.0%
! TAACTTATGCTTCATGAATT+TGG - chr6.4:48879156-48879175 MS.gene72606:intron 25.0%
! TACATCACATTTACATTGTT+TGG - chr6.4:48879302-48879321 MS.gene72606:intron 25.0%
! TCAAAATGTCAATTCAAACA+GGG + chr6.4:48881117-48881136 None:intergenic 25.0%
! TCACTGAAGATATAATTCAA+TGG - chr6.4:48882963-48882982 MS.gene72606:CDS 25.0%
! TCTCCTGATAATAATCATAA+TGG - chr6.4:48878289-48878308 MS.gene72606:intron 25.0%
! TGATAACCATATTAATTCCA+AGG + chr6.4:48878720-48878739 None:intergenic 25.0%
! TGATAAGCTTACTTATATAC+AGG + chr6.4:48880176-48880195 None:intergenic 25.0%
! TGGATTGAACAATATATTTG+AGG - chr6.4:48880511-48880530 MS.gene72606:intron 25.0%
! TTAAATGAGGTTCAAAATTG+TGG - chr6.4:48882332-48882351 MS.gene72606:intron 25.0%
! TTCAATGTAATTATATGCGT+CGG + chr6.4:48878017-48878036 None:intergenic 25.0%
!! ATACAATTTTCACACAATGT+TGG - chr6.4:48877784-48877803 MS.gene72606:CDS 25.0%
!! CTTGTATTAACTCTGAAAAA+TGG - chr6.4:48879120-48879139 MS.gene72606:intron 25.0%
!! TACTTTTGTTACCATTTAGA+GGG - chr6.4:48877508-48877527 MS.gene72606:CDS 25.0%
!! TAGATGCTTTTCTTACTATT+TGG - chr6.4:48880339-48880358 MS.gene72606:intron 25.0%
!! TATAAATCACAATCCCTTTT+AGG + chr6.4:48881573-48881592 None:intergenic 25.0%
!! TCAAATTTTCTTTGATCAGT+AGG - chr6.4:48879377-48879396 MS.gene72606:CDS 25.0%
!! TTATTTGAAACCTTGATAAG+TGG - chr6.4:48878514-48878533 MS.gene72606:CDS 25.0%
!! TTTTGTGTTAATATCAGCTA+TGG - chr6.4:48877479-48877498 MS.gene72606:CDS 25.0%
!!! AATCATTTTTCCACTAGTTA+GGG - chr6.4:48878640-48878659 MS.gene72606:intron 25.0%
!!! AATTTTTGGTGTTTCATTAG+AGG - chr6.4:48880287-48880306 MS.gene72606:intron 25.0%
!!! GATATTTTTACTTTTGAAGG+AGG + chr6.4:48880657-48880676 None:intergenic 25.0%
!!! GATTGAGCATTTTAACATAT+AGG - chr6.4:48879701-48879720 MS.gene72606:intron 25.0%
!!! TTCTTCATACAATTTTAGTG+AGG + chr6.4:48882864-48882883 None:intergenic 25.0%
!!! TTGAGCATTTTAACATATAG+GGG - chr6.4:48879703-48879722 MS.gene72606:intron 25.0%
!!! TTTTCCTTTGTTTTTAACAG+TGG - chr6.4:48878999-48879018 MS.gene72606:intron 25.0%
AAACAAAGGAAAATCACTTC+AGG + chr6.4:48878992-48879011 None:intergenic 30.0%
AAGGTTATAACTGAAAATCC+TGG - chr6.4:48881683-48881702 MS.gene72606:intron 30.0%
ACAGAAAATATTCATCGAGA+AGG - chr6.4:48881664-48881683 MS.gene72606:intron 30.0%
AGAAATGTTTGAGGGAATAT+TGG - chr6.4:48877739-48877758 MS.gene72606:CDS 30.0%
AGAATTTCCAAGAAAATTGC+TGG + chr6.4:48879526-48879545 None:intergenic 30.0%
CATGAAACATGAAACAAACA+AGG + chr6.4:48878240-48878259 None:intergenic 30.0%
CTCAAAATGTCAATTCAAAC+AGG + chr6.4:48881118-48881137 None:intergenic 30.0%
CTTCAACATGCATCTATATT+TGG - chr6.4:48880102-48880121 MS.gene72606:intron 30.0%
GACATCAGTAAAACAAAATC+AGG + chr6.4:48880962-48880981 None:intergenic 30.0%
GTAATTCAGCATACAAGAAA+GGG - chr6.4:48882645-48882664 MS.gene72606:CDS 30.0%
GTTAATATCAGCTATGGTTA+TGG - chr6.4:48877485-48877504 MS.gene72606:CDS 30.0%
TACAAACTGTTGTCAAATTG+CGG + chr6.4:48878754-48878773 None:intergenic 30.0%
TACCTAATCTTAACAGAAAG+AGG + chr6.4:48877813-48877832 None:intergenic 30.0%
TAGCCTAATAGAGAAACAAA+AGG + chr6.4:48879190-48879209 None:intergenic 30.0%
TAGTAGTTATGTTAAGTGTC+CGG + chr6.4:48880764-48880783 None:intergenic 30.0%
TATGACAGTTTCATGAACAT+TGG - chr6.4:48880830-48880849 MS.gene72606:intron 30.0%
TCTTCCACTGTTAAAAACAA+AGG + chr6.4:48879006-48879025 None:intergenic 30.0%
TGCCATACACAAGTATATTA+TGG - chr6.4:48882551-48882570 MS.gene72606:intron 30.0%
TGTAATTCAGCATACAAGAA+AGG - chr6.4:48882644-48882663 MS.gene72606:CDS 30.0%
TGTTTCATTAGAGGTTTATG+TGG - chr6.4:48880296-48880315 MS.gene72606:intron 30.0%
TTACTATTTGGAAGGAACAT+AGG - chr6.4:48880351-48880370 MS.gene72606:intron 30.0%
TTCGTGTGTTAAAATCTACA+CGG - chr6.4:48882263-48882282 MS.gene72606:intron 30.0%
TTTACAGATACCACTTATCA+AGG + chr6.4:48878527-48878546 None:intergenic 30.0%
TTTGTCCCTTGGAATTAATA+TGG - chr6.4:48878711-48878730 MS.gene72606:CDS 30.0%
! ATGTTGATGAGAAATGTTTG+AGG - chr6.4:48877730-48877749 MS.gene72606:CDS 30.0%
! GTACTTTTGTTACCATTTAG+AGG - chr6.4:48877507-48877526 MS.gene72606:CDS 30.0%
! TGCTTTTCTTACTATTTGGA+AGG - chr6.4:48880343-48880362 MS.gene72606:intron 30.0%
! TGTTGACATTTTTCTCCTAT+AGG + chr6.4:48881782-48881801 None:intergenic 30.0%
! TGTTGATGAGAAATGTTTGA+GGG - chr6.4:48877731-48877750 MS.gene72606:CDS 30.0%
! TTCTTTTAACATAAACGCCT+CGG + chr6.4:48877424-48877443 None:intergenic 30.0%
! TTTTTATGAGCGCTATCAAA+CGG + chr6.4:48881170-48881189 None:intergenic 30.0%
!! CAATCATTTTTCCACTAGTT+AGG - chr6.4:48878639-48878658 MS.gene72606:intron 30.0%
!! GCTGAATTACATTTTAGTGT+TGG + chr6.4:48882635-48882654 None:intergenic 30.0%
!! GTTCCTTTTGTTTCTCTATT+AGG - chr6.4:48879184-48879203 MS.gene72606:intron 30.0%
!!! ATCTCTGTTTTTGTCATTAC+AGG - chr6.4:48882580-48882599 MS.gene72606:intron 30.0%
!!! CATAACTTTTGAGACTGTTT+CGG - chr6.4:48879802-48879821 MS.gene72606:intron 30.0%
!!! TGAAGCTATGCCTTTTTTAA+GGG - chr6.4:48879739-48879758 MS.gene72606:intron 30.0%
!!! TTGAAGCTATGCCTTTTTTA+AGG - chr6.4:48879738-48879757 MS.gene72606:intron 30.0%
!!! TTGATTGTTTTGTTGGTTTC+TGG - chr6.4:48878320-48878339 MS.gene72606:intron 30.0%
AATCTATCTTGGAGAGCTTA+CGG + chr6.4:48879867-48879886 None:intergenic 35.0%
ACGTATAAAGAGTTAGAAGG+AGG - chr6.4:48880720-48880739 MS.gene72606:intron 35.0%
ACTATTTGAACCTGAAAGAG+AGG - chr6.4:48882937-48882956 MS.gene72606:CDS 35.0%
AGATGCATGTTGAAGAATGA+TGG + chr6.4:48880097-48880116 None:intergenic 35.0%
AGTAAGCTCAAAACAACTGA+TGG + chr6.4:48879843-48879862 None:intergenic 35.0%
AGTAGTTATGTTAAGTGTCC+GGG + chr6.4:48880763-48880782 None:intergenic 35.0%
ATAGTTAGAGTTGTGACAAC+TGG + chr6.4:48882143-48882162 None:intergenic 35.0%
ATCTTCCCTATGTTAGTACA+AGG + chr6.4:48879235-48879254 None:intergenic 35.0%
ATGTGATTAATTACGTCTGG+CGG - chr6.4:48882100-48882119 MS.gene72606:intron 35.0%
CACAATATGGGACAACAATT+TGG + chr6.4:48882460-48882479 None:intergenic 35.0%
CAGCTACAAAATCAGGAAAA+TGG - chr6.4:48878200-48878219 MS.gene72606:intron 35.0%
CATCTATATTTGGATGTTGC+AGG - chr6.4:48880112-48880131 MS.gene72606:intron 35.0%
CTAATGGCTACAAGGTTTAT+GGG - chr6.4:48879054-48879073 MS.gene72606:intron 35.0%
CTACTGAGTTATCATTGTTC+TGG - chr6.4:48881615-48881634 MS.gene72606:intron 35.0%
CTATACTGGACCACAATTAA+GGG + chr6.4:48878418-48878437 None:intergenic 35.0%
CTATGCAAGCTTCAATCTTT+GGG + chr6.4:48881862-48881881 None:intergenic 35.0%
CTCCTCTTTCTGTTAAGATT+AGG - chr6.4:48877808-48877827 MS.gene72606:intron 35.0%
CTGAAGAGCTTATGGAAATA+AGG + chr6.4:48881422-48881441 None:intergenic 35.0%
CTTATTCAAACGGCCTAAAA+GGG - chr6.4:48881557-48881576 MS.gene72606:intron 35.0%
CTTATTTCCATAAGCTCTTC+AGG - chr6.4:48881420-48881439 MS.gene72606:intron 35.0%
CTTGACCTTGTACTAACATA+GGG - chr6.4:48879227-48879246 MS.gene72606:intron 35.0%
CTTGGAAATTCTTGTGCAAA+TGG - chr6.4:48879534-48879553 MS.gene72606:intron 35.0%
GGAAAATGGAAAAATAAGGC+AGG - chr6.4:48878214-48878233 MS.gene72606:intron 35.0%
GTGACGTATAAAGAGTTAGA+AGG - chr6.4:48880717-48880736 MS.gene72606:intron 35.0%
GTTCCATTTCTTGTTCTACA+CGG - chr6.4:48882809-48882828 MS.gene72606:CDS 35.0%
TATAAAGAGTTAGAAGGAGG+AGG - chr6.4:48880723-48880742 MS.gene72606:intron 35.0%
TATGATTTATGAGCTAGGCA+CGG - chr6.4:48877931-48877950 MS.gene72606:intron 35.0%
TCCAAAGAGACCCTTAAAAA+AGG + chr6.4:48879752-48879771 None:intergenic 35.0%
TGCAAATGGATGTACCTATT+TGG - chr6.4:48879548-48879567 MS.gene72606:intron 35.0%
TGGATGTGTTGTCTTCATAA+GGG - chr6.4:48880850-48880869 MS.gene72606:intron 35.0%
TGTATGCTTACCACCAAAAA+TGG + chr6.4:48881932-48881951 None:intergenic 35.0%
TTATTATTGCGCAGTGTATG+TGG + chr6.4:48879436-48879455 None:intergenic 35.0%
TTGGATGTGTTGTCTTCATA+AGG - chr6.4:48880849-48880868 MS.gene72606:intron 35.0%
TTTGTGACAGCTACAAAATC+AGG - chr6.4:48878193-48878212 MS.gene72606:intron 35.0%
! ACTTGAGCTAGTTTATCTTC+TGG - chr6.4:48879779-48879798 MS.gene72606:intron 35.0%
! AGATTGACCAGCAATTTTCT+TGG - chr6.4:48879516-48879535 MS.gene72606:intron 35.0%
! ATTGGCTATAAGGAGAGTTT+TGG - chr6.4:48877704-48877723 MS.gene72606:CDS 35.0%
! CATTCACAATTTTTGTCCCT+TGG - chr6.4:48878700-48878719 MS.gene72606:CDS 35.0%
! GAAAATTGTATCACCCCTTT+TGG + chr6.4:48877775-48877794 None:intergenic 35.0%
! GCGTTCTTTTGACACAATAT+GGG + chr6.4:48882472-48882491 None:intergenic 35.0%
! GTACTGACAGATATGATTGA+AGG - chr6.4:48881198-48881217 MS.gene72606:intron 35.0%
! TGAATCTCCAGGAATTTTGT+TGG - chr6.4:48881072-48881091 MS.gene72606:intron 35.0%
! TGAGACTTCTCATCCATTTT+TGG - chr6.4:48881916-48881935 MS.gene72606:intron 35.0%
! TGCGTTCTTTTGACACAATA+TGG + chr6.4:48882473-48882492 None:intergenic 35.0%
! TTGTGGTTAGTTGTGTTGAA+TGG - chr6.4:48882349-48882368 MS.gene72606:intron 35.0%
! TTTTTCCACTAGTTAGGGTT+TGG - chr6.4:48878645-48878664 MS.gene72606:intron 35.0%
!! ATGAGGCTTTGAATAAAGAC+AGG - chr6.4:48880408-48880427 MS.gene72606:intron 35.0%
!! GGACTTGTTATTCTTATGCA+TGG - chr6.4:48878887-48878906 MS.gene72606:intron 35.0%
!! GTCAAGAAGTGCCTATAATA+TGG + chr6.4:48881840-48881859 None:intergenic 35.0%
!! TACAATTTTAGTGAGGCAGT+TGG + chr6.4:48882857-48882876 None:intergenic 35.0%
!! TGGTCTCTTGATTGTTTTGT+TGG - chr6.4:48878313-48878332 MS.gene72606:intron 35.0%
!!! ATCTTCTCCTCTTTTTCAAC+AGG + chr6.4:48877549-48877568 None:intergenic 35.0%
!!! ATTGGCTTTTTGGAACCAAA+AGG - chr6.4:48877757-48877776 MS.gene72606:CDS 35.0%
!!! TTGAGGGAATATTGGCTTTT+TGG - chr6.4:48877747-48877766 MS.gene72606:CDS 35.0%
!!! TTGGCTTTTTGGAACCAAAA+GGG - chr6.4:48877758-48877777 MS.gene72606:CDS 35.0%
AAGATTGAAGCTTGCATAGC+TGG - chr6.4:48881863-48881882 MS.gene72606:intron 40.0%
AAGCTAACCTGAAGAGCTTA+TGG + chr6.4:48881430-48881449 None:intergenic 40.0%
AAGTCATGGTCCCTTAATTG+TGG - chr6.4:48878405-48878424 MS.gene72606:intron 40.0%
ACAAGGTTTATGGGATGGAT+TGG - chr6.4:48879063-48879082 MS.gene72606:intron 40.0%
ACAGATATTGACACAGACAC+TGG + chr6.4:48878096-48878115 None:intergenic 40.0%
AGCGCTCATAAAAATCTCTG+AGG - chr6.4:48881176-48881195 MS.gene72606:intron 40.0%
AGGAGGAAAATTGATTGCAC+AGG + chr6.4:48880640-48880659 None:intergenic 40.0%
AGGCAGAATATGCAATCAAC+AGG + chr6.4:48878555-48878574 None:intergenic 40.0%
AGGTGCAGCAATTACTCTTA+AGG - chr6.4:48881736-48881755 MS.gene72606:intron 40.0%
AGTGTTGTCATCATCATCAC+CGG - chr6.4:48877580-48877599 MS.gene72606:CDS 40.0%
ATGTGTTACCTACTTTGTGC+AGG - chr6.4:48878864-48878883 MS.gene72606:intron 40.0%
CAACTGCATGATCAAGAGAA+TGG + chr6.4:48881035-48881054 None:intergenic 40.0%
CAGGTTTGAGCAAAAGTGAA+TGG + chr6.4:48880943-48880962 None:intergenic 40.0%
CATATGATCCAACACCTTCA+TGG + chr6.4:48877673-48877692 None:intergenic 40.0%
CCTATACTGGACCACAATTA+AGG + chr6.4:48878419-48878438 None:intergenic 40.0%
CCTATGTTAGTACAAGGTCA+AGG + chr6.4:48879229-48879248 None:intergenic 40.0%
CCTTAATTGTGGTCCAGTAT+AGG - chr6.4:48878416-48878435 MS.gene72606:intron 40.0%
CCTTGACCTTGTACTAACAT+AGG - chr6.4:48879226-48879245 MS.gene72606:intron 40.0%
GATTCGAAGAATCTCATAGC+CGG + chr6.4:48882753-48882772 None:intergenic 40.0%
GCTAATGGCTACAAGGTTTA+TGG - chr6.4:48879053-48879072 MS.gene72606:intron 40.0%
GCTATGCAAGCTTCAATCTT+TGG + chr6.4:48881863-48881882 None:intergenic 40.0%
GCTTATTCAAACGGCCTAAA+AGG - chr6.4:48881556-48881575 MS.gene72606:intron 40.0%
GGCAGTAGTAATGATGCTAT+TGG + chr6.4:48882614-48882633 None:intergenic 40.0%
GGTATCACCTGTTGAAAAAG+AGG - chr6.4:48877539-48877558 MS.gene72606:CDS 40.0%
GTTGGATCATATGATGAGGA+GGG - chr6.4:48877680-48877699 MS.gene72606:CDS 40.0%
TATGTGGCTGTTGTAAACTC+TGG + chr6.4:48879420-48879439 None:intergenic 40.0%
TATTCAAAGCCTCATCTGTG+AGG + chr6.4:48880403-48880422 None:intergenic 40.0%
TCAGTGATATCCTCTCTTTC+AGG + chr6.4:48882950-48882969 None:intergenic 40.0%
TCATATGATGAGGAGGGAAT+TGG - chr6.4:48877686-48877705 MS.gene72606:CDS 40.0%
TGACACCATAGCCAAAATCA+CGG - chr6.4:48878481-48878500 MS.gene72606:CDS 40.0%
TGTGTTACCTACTTTGTGCA+GGG - chr6.4:48878865-48878884 MS.gene72606:intron 40.0%
TGTTGGATCATATGATGAGG+AGG - chr6.4:48877679-48877698 MS.gene72606:CDS 40.0%
! GATATGATTGAAGGCGTGTT+TGG - chr6.4:48881207-48881226 MS.gene72606:intron 40.0%
! GATGTCTGCTCTCATCTTTT+AGG - chr6.4:48880976-48880995 MS.gene72606:intron 40.0%
! TGATCATGCAGTTGCTGATT+TGG - chr6.4:48881041-48881060 MS.gene72606:intron 40.0%
! TGCATGGTCTTAATGAACAC+AGG - chr6.4:48878903-48878922 MS.gene72606:intron 40.0%
!! AGGTGTTGGATCATATGATG+AGG - chr6.4:48877676-48877695 MS.gene72606:CDS 40.0%
!! GACTTCTCATCCATTTTTGG+TGG - chr6.4:48881919-48881938 MS.gene72606:intron 40.0%
!! GTTTATGGGATGGATTGGAT+TGG - chr6.4:48879068-48879087 MS.gene72606:intron 40.0%
!! TAGTATTACCAGCATCGATG+CGG - chr6.4:48881310-48881329 MS.gene72606:intron 40.0%
!! TCTCATCTTTTAGGTCATGG+TGG - chr6.4:48880985-48881004 MS.gene72606:intron 40.0%
!! TGCTCTCATCTTTTAGGTCA+TGG - chr6.4:48880982-48881001 MS.gene72606:intron 40.0%
!!! GCCTTTTTTAAGGGTCTCTT+TGG - chr6.4:48879748-48879767 MS.gene72606:intron 40.0%
!!! TGGCTTTTTGGAACCAAAAG+GGG - chr6.4:48877759-48877778 MS.gene72606:CDS 40.0%
AACAGCAGCATCACCTATAC+TGG + chr6.4:48878432-48878451 None:intergenic 45.0%
AAGATTGTGCCATGGAAGAG+TGG - chr6.4:48877630-48877649 MS.gene72606:CDS 45.0%
ACATTCACATCACCTGCAGT+TGG - chr6.4:48881890-48881909 MS.gene72606:intron 45.0%
ACCATTTAGAGGGCGAAGAA+GGG - chr6.4:48877518-48877537 MS.gene72606:CDS 45.0%
AGGATACTTGCTCGTGTGTT+TGG - chr6.4:48880428-48880447 MS.gene72606:intron 45.0%
CAAAGCCAAACCCTAACTAG+TGG + chr6.4:48878653-48878672 None:intergenic 45.0%
CACGAGTGTCAGTATTGTGT+CGG + chr6.4:48881259-48881278 None:intergenic 45.0%
CATAGCCAAAATCACGGTTG+CGG - chr6.4:48878487-48878506 MS.gene72606:CDS 45.0%
CGCGAAATATTCAGACCCAT+TGG - chr6.4:48882700-48882719 MS.gene72606:CDS 45.0%
GCAAAGCAGCTGAATGCTAA+TGG - chr6.4:48879038-48879057 MS.gene72606:intron 45.0%
GCTGAATGCTAATGGCTACA+AGG - chr6.4:48879046-48879065 MS.gene72606:intron 45.0%
GTCTGTCAGTGCTTCTTAGA+TGG - chr6.4:48881362-48881381 MS.gene72606:CDS 45.0%
GTGCCGTGTAGAACAAGAAA+TGG + chr6.4:48882815-48882834 None:intergenic 45.0%
GTGTTACCTACTTTGTGCAG+GGG - chr6.4:48878866-48878885 MS.gene72606:intron 45.0%
TACCATTTAGAGGGCGAAGA+AGG - chr6.4:48877517-48877536 MS.gene72606:CDS 45.0%
TGAAGCACAGACACGTACAT+CGG - chr6.4:48879655-48879674 MS.gene72606:intron 45.0%
TGAGGAGGGAATTGGCTATA+AGG - chr6.4:48877694-48877713 MS.gene72606:CDS 45.0%
TGGCTACAAGGTTTATGGGA+TGG - chr6.4:48879058-48879077 MS.gene72606:intron 45.0%
TGGTATGTCGATGAATCTCC+AGG - chr6.4:48881061-48881080 MS.gene72606:intron 45.0%
TGTCATCATCATCACCGGAA+AGG - chr6.4:48877585-48877604 MS.gene72606:CDS 45.0%
TGTTGGTATGGTTGCCATGA+AGG - chr6.4:48877656-48877675 MS.gene72606:CDS 45.0%
TTCCATGGCACAATCTTTGC+CGG + chr6.4:48877627-48877646 None:intergenic 45.0%
TTCTGTTATGGACACTCGAC+AGG - chr6.4:48881716-48881735 MS.gene72606:intron 45.0%
TTGACCTAGTTAACCGACCT+AGG - chr6.4:48880375-48880394 MS.gene72606:intron 45.0%
TTTCTTGTTCTACACGGCAC+TGG - chr6.4:48882815-48882834 MS.gene72606:CDS 45.0%
! TAACTTGCGCTAGAACTCGT+TGG - chr6.4:48879453-48879472 MS.gene72606:intron 45.0%
! TACGTCTGGCGGATAGTTAA+TGG - chr6.4:48882111-48882130 MS.gene72606:intron 45.0%
! TATGGTTGCCATGAAGGTGT+TGG - chr6.4:48877662-48877681 MS.gene72606:CDS 45.0%
! TGTCAGTATTGTGTCGGTGT+TGG + chr6.4:48881253-48881272 None:intergenic 45.0%
! TTAGGTCATGGTGGTAGTGA+TGG - chr6.4:48880994-48881013 MS.gene72606:intron 45.0%
!! CTAAGAAGCACTGACAGACA+CGG + chr6.4:48881361-48881380 None:intergenic 45.0%
!! GGCTATAAGGAGAGTTTTGG+AGG - chr6.4:48877707-48877726 MS.gene72606:CDS 45.0%
AATCAGACACGCCTAATCCG+AGG + chr6.4:48877962-48877981 None:intergenic 50.0%
ACAAGTCCCCTGCACAAAGT+AGG + chr6.4:48878875-48878894 None:intergenic 50.0%
ACCCTTCTTCGCCCTCTAAA+TGG + chr6.4:48877522-48877541 None:intergenic 50.0%
AGCGATCCTGTGCATACCAA+TGG + chr6.4:48882719-48882738 None:intergenic 50.0%
AGTTAGAAGGAGGAGGTCTC+GGG - chr6.4:48880730-48880749 MS.gene72606:intron 50.0%
ATTGTGCCATGGAAGAGTGG+TGG - chr6.4:48877633-48877652 MS.gene72606:CDS 50.0%
GAAGTCTCAACTCCAACTGC+AGG + chr6.4:48881905-48881924 None:intergenic 50.0%
GAGTTAGAAGGAGGAGGTCT+CGG - chr6.4:48880729-48880748 MS.gene72606:intron 50.0%
GCGATCCTGTGCATACCAAT+GGG + chr6.4:48882718-48882737 None:intergenic 50.0%
GGATCGCTTAGAGTACGAAC+CGG - chr6.4:48882731-48882750 MS.gene72606:CDS 50.0%
GTGGCTGTTGTAAACTCTGG+AGG + chr6.4:48879417-48879436 None:intergenic 50.0%
TATTTCGCGATGAGAGCCTC+CGG + chr6.4:48882689-48882708 None:intergenic 50.0%
TCAGACCCATTGGTATGCAC+AGG - chr6.4:48882710-48882729 MS.gene72606:CDS 50.0%
TTCCGGCAAAGATTGTGCCA+TGG - chr6.4:48877622-48877641 MS.gene72606:CDS 50.0%
! GGTGGTAGTGATGGTTTGCA+TGG - chr6.4:48881003-48881022 MS.gene72606:intron 50.0%
!! GAAGAGTGGTGGTGTTGGTA+TGG - chr6.4:48877644-48877663 MS.gene72606:CDS 50.0%
!!! CGCAACCGTGATTTTGGCTA+TGG + chr6.4:48878489-48878508 None:intergenic 50.0%
ACCTAGGCACCTCACAGATG+AGG - chr6.4:48880391-48880410 MS.gene72606:intron 55.0%
ATTTCGCGATGAGAGCCTCC+GGG + chr6.4:48882688-48882707 None:intergenic 55.0%
CACAGACACTGGACACGACA+CGG + chr6.4:48878085-48878104 None:intergenic 55.0%
CACTGACAGACACGGACAAG+AGG + chr6.4:48881353-48881372 None:intergenic 55.0%
CCAACACCACCACTCTTCCA+TGG + chr6.4:48877642-48877661 None:intergenic 55.0%
GGTGCCTAGGTCGGTTAACT+AGG + chr6.4:48880382-48880401 None:intergenic 55.0%
GTTGCCAGTTTCTCGAGACC+CGG - chr6.4:48882667-48882686 MS.gene72606:CDS 55.0%
TCATCATCACCGGAAAGGCG+CGG - chr6.4:48877590-48877609 MS.gene72606:CDS 55.0%
TGGTGTCTGACCCGTGTTAG+TGG - chr6.4:48881227-48881246 MS.gene72606:intron 55.0%
! ACGGTCCGCAACCGTGATTT+TGG + chr6.4:48878495-48878514 None:intergenic 55.0%
! CATCTGTGAGGTGCCTAGGT+CGG + chr6.4:48880391-48880410 None:intergenic 55.0%
! CCATGGAAGAGTGGTGGTGT+TGG - chr6.4:48877639-48877658 MS.gene72606:CDS 55.0%
! TAACACTGCCGCATCGATGC+TGG + chr6.4:48881321-48881340 None:intergenic 55.0%
!! GTCGGTGTTGGCCACTAACA+CGG + chr6.4:48881241-48881260 None:intergenic 55.0%
!! TCGGTGTTGGCCACTAACAC+GGG + chr6.4:48881240-48881259 None:intergenic 55.0%
AGCTAGGCACGGACACTCCT+CGG - chr6.4:48877942-48877961 MS.gene72606:intron 60.0%
GAGGTCTCGGGTTCGATTCC+CGG - chr6.4:48880742-48880761 MS.gene72606:intron 60.0%
GCACGGACACTCCTCGGATT+AGG - chr6.4:48877948-48877967 MS.gene72606:intron 60.0%
! GCCTCATCTGTGAGGTGCCT+AGG + chr6.4:48880395-48880414 None:intergenic 60.0%
GCCAGTTTCTCGAGACCCGG+AGG - chr6.4:48882670-48882689 MS.gene72606:CDS 65.0%
GCCTCCGGGTCTCGAGAAAC+TGG + chr6.4:48882674-48882693 None:intergenic 65.0%
! TCATCACCGGAAAGGCGCGG+TGG - chr6.4:48877593-48877612 MS.gene72606:CDS 65.0%
AGGCGCGGTGGTGCGCGTTC+CGG - chr6.4:48877605-48877624 MS.gene72606:CDS 75.0%
CGCGCACCACCGCGCCTTTC+CGG + chr6.4:48877602-48877621 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 48877414 48883003 48877414 ID=MS.gene72606
chr6.4 mRNA 48877414 48883003 48877414 ID=MS.gene72606.t1;Parent=MS.gene72606
chr6.4 exon 48882588 48883003 48882588 ID=MS.gene72606.t1.exon1;Parent=MS.gene72606.t1
chr6.4 CDS 48882588 48883003 48882588 ID=cds.MS.gene72606.t1;Parent=MS.gene72606.t1
chr6.4 exon 48881493 48881531 48881493 ID=MS.gene72606.t1.exon2;Parent=MS.gene72606.t1
chr6.4 CDS 48881493 48881531 48881493 ID=cds.MS.gene72606.t1;Parent=MS.gene72606.t1
chr6.4 exon 48881328 48881398 48881328 ID=MS.gene72606.t1.exon3;Parent=MS.gene72606.t1
chr6.4 CDS 48881328 48881398 48881328 ID=cds.MS.gene72606.t1;Parent=MS.gene72606.t1
chr6.4 exon 48879355 48879419 48879355 ID=MS.gene72606.t1.exon4;Parent=MS.gene72606.t1
chr6.4 CDS 48879355 48879419 48879355 ID=cds.MS.gene72606.t1;Parent=MS.gene72606.t1
chr6.4 exon 48878660 48878749 48878660 ID=MS.gene72606.t1.exon5;Parent=MS.gene72606.t1
chr6.4 CDS 48878660 48878749 48878660 ID=cds.MS.gene72606.t1;Parent=MS.gene72606.t1
chr6.4 exon 48878477 48878569 48878477 ID=MS.gene72606.t1.exon6;Parent=MS.gene72606.t1
chr6.4 CDS 48878477 48878569 48878477 ID=cds.MS.gene72606.t1;Parent=MS.gene72606.t1
chr6.4 exon 48877414 48877815 48877414 ID=MS.gene72606.t1.exon7;Parent=MS.gene72606.t1
chr6.4 CDS 48877414 48877815 48877414 ID=cds.MS.gene72606.t1;Parent=MS.gene72606.t1
Gene Sequence

>MS.gene72606

ATGGCTACCGAGGCGTTTATGTTAAAAGAAAGCGCCTATTTTTCATTAAGAGCATTGAAGAGTCTTTTTGTGTTAATATCAGCTATGGTTATGGTACTTTTGTTACCATTTAGAGGGCGAAGAAGGGTATCACCTGTTGAAAAAGAGGAGAAGATTCAAAATCATGAGTGTTGTCATCATCATCACCGGAAAGGCGCGGTGGTGCGCGTTCCGGCAAAGATTGTGCCATGGAAGAGTGGTGGTGTTGGTATGGTTGCCATGAAGGTGTTGGATCATATGATGAGGAGGGAATTGGCTATAAGGAGAGTTTTGGAGGATGTTGATGAGAAATGTTTGAGGGAATATTGGCTTTTTGGAACCAAAAGGGGTGATACAATTTTCACACAATGTTGGACTCCTCTTTCTGTTAAGATTAGGTATGTTTATAGGTTTGGATTCTTCAATAATCATAATTTTTGTCATGTTATTATAATCAAGATAATCTTGTTTGATTCTATTGACCTTGTGTTTAAAAAATTATGATTTATGAGCTAGGCACGGACACTCCTCGGATTAGGCGTGTCTGATTGTCTCTGTATCAGACACGTGTTGTGTCTGACACCGACGCATATAATTACATTGAATTATGCGATTTTCTCAAATTATTAACGGTGCAGACGTGTTAGTGTCCGTGTCGTGTCCAGTGTCTGTGTCAATATCTGTGCTTCATAGTTTATGAGTCATTTTTAATTTATCTATAGAAGGATATAGATATATGATTTGAGAAGAAAGAAAAGAGTTTTGTGACAGCTACAAAATCAGGAAAATGGAAAAATAAGGCAGGCCTTGTTTGTTTCATGTTTCATGTTCTGTTTCTTATGTGTATATTTCAGCTTTCTCCTGATAATAATCATAATGGTTGGTCTCTTGATTGTTTTGTTGGTTTCTGGAAATTTTAATTTCTGTCCTTGTTTTTATGTAAAACTATTTGAGAGGTCCCTTAACTTAATTTAAGTCATGGTCCCTTAATTGTGGTCCAGTATAGGTGATGCTGCTGTTATTGCAGTTATAATGACATAAACAAATCTTGACACCATAGCCAAAATCACGGTTGCGGACCGTTATTTGAAACCTTGATAAGTGGTATCTGTAAATGTCTCCTGTTGATTGCATATTCTGCCTTGTTAATTTTTTATTTCTTCAAAACAAGTAATCTAGTTGTAGCATAAAAACAACAAACAATAGTCAATCATTTTTCCACTAGTTAGGGTTTGGCTTTGTTTTCATTGACAAAAACAAAAGCATGACATTCACAATTTTTGTCCCTTGGAATTAATATGGTTATCATGTTTTTATAACCGCAATTTGACAACAGTTTGTACTAAATAGCGAACTGCAGAACAATTGCAATTAGTTAAAATTCTGCTATATACTTAAGTGTTATAGCGTCGTTATTTTACAATATTGACTAATGTGTTACCTACTTTGTGCAGGGGACTTGTTATTCTTATGCATGGTCTTAATGAACACAGGTTCGAAATTTTAGACAATTTCTAGTTCTTAAGTCATTCAGTTTTTTCTATTGATTCTTGTTTTCCTGAAGTGATTTTCCTTTGTTTTTAACAGTGGAAGATATAATAATTTTGCAAAGCAGCTGAATGCTAATGGCTACAAGGTTTATGGGATGGATTGGATTGGTGAGTAAGAACCAAATTATAATTAGTATGCTTGTATTAACTCTGAAAAATGGTAGTAGCTTTTTTTAACTTATGCTTCATGAATTTGGTACTAGTTCCTTTTGTTTCTCTATTAGGCTAAAGACTAATTTCATGTCCTTGACCTTGTACTAACATAGGGAAGATTATATGAATCTTACTAATATAATTTACATTCTGCATGATCTTGTCGTTACATCACATTTACATTGTTTGGTATTGATGATGATTCATTGACCAATATTTGTGTAGTTTCTACTGTAGAGTTTTCAAATTTTCTTTGATCAGTAGGAATCGAAGTCGTTACCTCCAGAGTTTACAACAGCCACATACACTGCGCAATAATAACTTGCGCTAGAACTCGTTGGTTTGTGTTTGTAGTTAATTAAGGATAGAGAAGTACTAGAGAGATTGACCAGCAATTTTCTTGGAAATTCTTGTGCAAATGGATGTACCTATTTGGCTAATTTCAATTTGCAAAAGACATATGCTTTGTGTAATTCAATATACTAGATTATTTATTTATAACCCATTAAAGCATTTTCTATGAAGCACAGACACGTACATCGGCAAAAATTTGAGAAAATAGAAGTGATTGAGCATTTTAACATATAGGGGATCTTTCTGTCTTTGAAGCTATGCCTTTTTTAAGGGTCTCTTTGGATTGACTTACTTGAGCTAGTTTATCTTCTGGCATAACTTTTGAGACTGTTTCGGAGAGCTTATGACATGCCATCAGTTGTTTTGAGCTTACTTCCGTAAGCTCTCCAAGATAGATTATGAAAATAGTTCATAGATCACATTGAAAAAATTGACTTCATTTGATCGTTTGTTACAAAAATAACTTAAGACATACGCACTTATATTATAATCAGTAAATTAAGCTGTTAATCCAAACAATATGAAATTGTGAAGAAAAATTGTTTTGACGAATTTTATGTCATCCTTTTTTTACATGATAGTCATTTTGTTTAATAGTATAGTGACCATCATTCTTCAACATGCATCTATATTTGGATGTTGCAGGAAGATGCGTATTTGTGCGATAAAGTAACATGTGAAGCTCCTGTATATAAGTAAGCTTATCATCTGTGTGAATTGTGTCTGACTCATATGTTTAAGATTAATAAATTCATGAGTCTTACACAGATAAGTGTTCTTTCACTTTCTTATCTGAACAATTTTTGGTGTTTCATTAGAGGTTTATGTGGTCTTTTGATAAAAGCATGTGTAGATGCTTTTCTTACTATTTGGAAGGAACATAGGATTGACCTAGTTAACCGACCTAGGCACCTCACAGATGAGGCTTTGAATAAAGACAGGATACTTGCTCGTGTGTTTGGTTTTGCCGTGACAATTAATTTTGAATTAGTTGATTGTACAAAATTGATTATGAATAAAAGTGGATTGAACAATATATTTGAGGCTGAAAATCAATTGTAGATGCAAAAGCTTCAAGTTAGAATCAATTCTAGAGTCGAAATCAAGTCTACTCGATAACATTGAAACATTTCGAAATCATTTCTACACCTGTGCAATCAATTTTCCTCCTTCAAAAGTAAAAATATCGATCAAGTTTTCTGCAGTCGAAGTTAAATTCTAGCTTTAAGTGACGTATAAAGAGTTAGAAGGAGGAGGTCTCGGGTTCGATTCCCGGACACTTAACATAACTACTAAGATTGCTAACATTTGCCTATATAAAAAACATAATTAAGAATATGATATGACAGTTTCATGAACATTGGATGTGTTGTCTTCATAAGGGAATGTGCTGTGTATAAGTCTGTTTTGAAACCTTGTATGTTTTATTGTCTAATTGGATAGATTGTGTTCCATTCACTTTTGCTCAAACCTGATTTTGTTTTACTGATGTCTGCTCTCATCTTTTAGGTCATGGTGGTAGTGATGGTTTGCATGGATATGTCCATTCTCTTGATCATGCAGTTGCTGATTTGGTATGTCGATGAATCTCCAGGAATTTTGTTGGAATATATATATAACTAAGGCCCTGTTTGAATTGACATTTTGAGTTTGTTTGCTGACATAAGTACTTGTAAGACCGTTTGATAGCGCTCATAAAAATCTCTGAGGTACTGACAGATATGATTGAAGGCGTGTTTGGTGTCTGACCCGTGTTAGTGGCCAACACCGACACAATACTGACACTCGTGATTATATTCAATTCATTCTTTTCTTTTTTCGTAGTATTACCAGCATCGATGCGGCAGTGTTAGTGTCATGTCCTCTTGTCCGTGTCTGTCAGTGCTTCTTAGATGGAAACAGTTTATGAGATATTCGCAAGTTGTTTTTACCTTATTTCCATAAGCTCTTCAGGTTAGCTTTTGATAATAGTTTATATCTTATATGAAAACAGGATCACTTTATTTTATCGTTTGCTATAGAAATGACTTATAAGTAAGCACGTATATATACGTGCTTATGCTATAAGCTTATTCAAACGGCCTAAAAGGGATTGTGATTTATATTTAAGTTTGGATTGTATGTTGCTACTGAGTTATCATTGTTCTGGTATATATCATTGTATTTTTCTTATAAACAGAAAATATTCATCGAGAAGGTTATAACTGAAAATCCTGGTCTTCCATGTTTCTGTTATGGACACTCGACAGGTGCAGCAATTACTCTTAAGGTATGATTTTTTTGAAACTTACCTATAGGAGAAAAATGTCAACAACCAATTGAATTGTGTATAATGTATTCATTATTATCCATATTATAGGCACTTCTTGACCCAAAGATTGAAGCTTGCATAGCTGGTGCTACATTCACATCACCTGCAGTTGGAGTTGAGACTTCTCATCCATTTTTGGTGGTAAGCATACACTGCAGCTTGCGTCCAACTTTTTGATTTAAGTGATTATATGCAGATATCAGAATATATCTAGAGTTTAATAACTTTGCAATGATGGTATACAAAATGTTATTTTGACGCATATTTTACGACAATTTAGATGGCTAGCACAGTTTAAATATGTGATTAATTACGTCTGGCGGATAGTTAATGGATATAGCCAGTTGTCACAACTCTAACTATTCACTGAACCTAATTAACCACGATTTTAATCGTTATTAACTATAATATTCGGTGTTTAAATATACATGATATTAATAAATTGTGTTCAATATACATGGTTTTCGTGTGTTAAAATCTACACGGTATCCATTTATCATGATTTGTAGTCTTTATACACATGAAAACATAGTTAAATGAGGTTCAAAATTGTGGTTAGTTGTGTTGAATGGATGATAGATTAGTTGTGATATCATGTTATATTCATTAACTATCAACTGAAAGTGATTTGCCATCCATTTTAACTGTATTAACTAACCAAATTGTTGTCCCATATTGTGTCAAAAGAACGCACCTCTAAAAGAATTATATCGATATTTATTTCACCATAGTATCATGTTATATATGATTATGCCATACACAAGTATATTATGGTTATTCATCTCTGTTTTTGTCATTACAGGTACTTGCTCCAATAGCATCATTACTACTGCCAACACTAAAATGTAATTCAGCATACAAGAAAGGGTTGCCAGTTTCTCGAGACCCGGAGGCTCTCATCGCGAAATATTCAGACCCATTGGTATGCACAGGATCGCTTAGAGTACGAACCGGCTATGAGATTCTTCGAATCACAAGCTACTTGCAGCAAAATCTAAGAAAAATGAAAGTTCCATTTCTTGTTCTACACGGCACTGGTGATTGTGTGACTGATCCAACTGCCTCACTAAAATTGTATGAAGAAGCTTCATCAAGTGACAAAAGTATCAAATTGTATGAAGGATTTTCACATGATCTACTATTTGAACCTGAAAGAGAGGATATCACTGAAGATATAATTCAATGGTTGAATTCTAGAGTGTGA

Protein sequence

>MS.gene72606.t1

MATEAFMLKESAYFSLRALKSLFVLISAMVMVLLLPFRGRRRVSPVEKEEKIQNHECCHHHHRKGAVVRVPAKIVPWKSGGVGMVAMKVLDHMMRRELAIRRVLEDVDEKCLREYWLFGTKRGDTIFTQCWTPLSVKIRGLVILMHGLNEHSGRYNNFAKQLNANGYKVYGMDWIGHGGSDGLHGYVHSLDHAVADLKIFIEKVITENPGLPCFCYGHSTGAAITLKALLDPKIEACIAGATFTSPAVGVETSHPFLVVLAPIASLLLPTLKCNSAYKKGLPVSRDPEALIAKYSDPLVCTGSLRVRTGYEILRITSYLQQNLRKMKVPFLVLHGTGDCVTDPTASLKLYEEASSSDKSIKLYEGFSHDLLFEPEREDITEDIIQWLNSRV