AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029764

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029764.t1 MTR_1g063020 97.973 296 6 0 1 296 1 296 0.0 610
MS.gene029764.t1 MTR_7g102260 82.131 291 52 0 6 296 3 293 0.0 517
MS.gene029764.t1 MTR_4g057450 69.204 289 89 0 6 294 16 304 1.20e-153 432
MS.gene029764.t1 MTR_2g095800 64.803 304 96 2 2 294 6 309 7.59e-145 409
MS.gene029764.t1 MTR_1g033420 40.604 298 156 7 5 294 7 291 9.13e-70 219
MS.gene029764.t1 MTR_8g064180 37.459 307 175 6 1 294 8 310 3.02e-65 207
MS.gene029764.t1 MTR_5g029100 39.259 270 149 4 37 294 39 305 1.31e-61 199
MS.gene029764.t1 MTR_1g105900 38.686 274 149 8 32 294 26 291 7.19e-61 195
MS.gene029764.t1 MTR_3g089540 41.481 270 140 7 33 294 23 282 3.61e-60 193
MS.gene029764.t1 MTR_7g093530 39.245 265 144 6 39 294 23 279 1.68e-58 189
MS.gene029764.t1 MTR_7g084770 38.545 275 148 8 31 294 23 287 6.83e-58 187
MS.gene029764.t1 MTR_4g128410 38.868 265 145 7 39 294 24 280 9.49e-58 187
MS.gene029764.t1 MTR_5g091730 41.597 238 125 6 61 294 51 278 1.15e-57 187
MS.gene029764.t1 MTR_7g084760 38.662 269 144 8 37 294 29 287 4.21e-57 186
MS.gene029764.t1 MTR_8g081040 39.695 262 142 6 39 294 30 281 4.88e-57 185
MS.gene029764.t1 MTR_4g128400 40.310 258 133 7 48 294 36 283 5.79e-57 185
MS.gene029764.t1 MTR_4g128570 40.458 262 131 9 39 294 30 272 6.72e-57 184
MS.gene029764.t1 MTR_6g088320 38.760 258 139 6 48 294 34 283 1.62e-56 184
MS.gene029764.t1 MTR_3g084630 40.152 264 141 6 37 294 25 277 3.37e-56 183
MS.gene029764.t1 MTR_7g084750 38.722 266 142 8 40 294 32 287 3.95e-56 183
MS.gene029764.t1 MTR_3g084620 40.152 264 141 6 37 294 25 277 4.81e-56 182
MS.gene029764.t1 MTR_4g045853 38.976 254 132 5 48 286 35 280 6.74e-56 182
MS.gene029764.t1 MTR_2g089140 36.364 275 152 5 35 294 20 286 1.72e-55 181
MS.gene029764.t1 MTR_4g126920 37.132 272 152 7 34 294 18 281 1.97e-55 181
MS.gene029764.t1 MTR_5g029100 39.831 236 129 3 69 294 42 274 4.34e-55 181
MS.gene029764.t1 MTR_6g033085 37.879 264 147 7 40 294 32 287 4.90e-55 180
MS.gene029764.t1 MTR_4g128580 37.410 278 153 6 30 294 16 285 1.67e-54 179
MS.gene029764.t1 MTR_8g102910 40.458 262 129 8 48 294 30 279 2.50e-54 178
MS.gene029764.t1 MTR_6g033055 37.500 264 148 7 40 294 32 287 4.63e-54 178
MS.gene029764.t1 MTR_2g038860 36.667 270 132 7 39 286 25 277 8.88e-54 177
MS.gene029764.t1 MTR_2g038705 36.667 270 132 7 39 286 25 277 8.88e-54 177
MS.gene029764.t1 MTR_1g105495 34.437 302 166 9 9 294 9 294 1.20e-53 177
MS.gene029764.t1 MTR_8g090100 36.727 275 150 7 35 294 16 281 3.63e-51 171
MS.gene029764.t1 MTR_8g102220 37.023 262 136 8 39 294 28 266 9.30e-51 169
MS.gene029764.t1 MTR_8g013055 37.736 265 141 8 34 286 25 277 3.80e-50 167
MS.gene029764.t1 MTR_4g097640 36.194 268 154 7 36 294 28 287 7.55e-50 167
MS.gene029764.t1 MTR_4g097670 36.194 268 154 7 36 294 28 287 7.55e-50 167
MS.gene029764.t1 MTR_2g089140 37.991 229 119 5 81 294 3 223 1.40e-49 164
MS.gene029764.t1 MTR_7g056090 36.913 298 151 11 7 294 11 281 1.97e-49 166
MS.gene029764.t1 MTR_4g097700 36.226 265 152 7 39 294 68 324 3.48e-49 166
MS.gene029764.t1 MTR_4g128590 40.455 220 111 6 87 294 64 275 1.14e-48 163
MS.gene029764.t1 MTR_2g049130 32.353 272 154 12 37 296 26 279 3.29e-36 131
MS.gene029764.t1 MTR_2g049030 31.970 269 157 11 35 294 25 276 5.39e-36 130
MS.gene029764.t1 MTR_8g032640 33.333 174 99 6 65 234 38 198 3.12e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029764.t1 AT2G36870 81.443 291 54 0 5 295 8 298 0.0 504
MS.gene029764.t1 AT3G44990 65.424 295 99 2 1 294 1 293 9.63e-140 396
MS.gene029764.t1 AT2G36870 80.117 171 34 0 5 175 8 178 1.08e-100 293
MS.gene029764.t1 AT1G10550 35.275 309 173 6 5 294 9 309 7.13e-65 206
MS.gene029764.t1 AT1G14720 39.405 269 152 5 34 294 25 290 1.32e-64 206
MS.gene029764.t1 AT4G14130 41.791 268 134 7 39 294 27 284 1.31e-63 202
MS.gene029764.t1 AT1G32170 40.511 274 146 6 33 294 25 293 3.00e-62 200
MS.gene029764.t1 AT2G01850 40.152 264 147 5 39 294 30 290 1.80e-61 198
MS.gene029764.t1 AT5G57550 38.246 285 154 6 7 286 6 273 2.34e-61 196
MS.gene029764.t1 AT5G57530 40.370 270 142 8 35 294 22 282 5.00e-60 193
MS.gene029764.t1 AT3G23730 39.852 271 142 7 37 294 24 286 1.41e-59 192
MS.gene029764.t1 AT1G11545 37.500 312 151 10 2 294 13 299 2.32e-58 189
MS.gene029764.t1 AT4G18990 37.544 285 150 6 33 294 33 312 2.98e-58 191
MS.gene029764.t1 AT5G57540 40.000 265 142 8 39 294 25 281 3.07e-57 186
MS.gene029764.t1 AT5G57560 39.483 271 142 9 37 294 20 281 3.31e-57 186
MS.gene029764.t1 AT5G48070 37.255 306 147 10 1 294 9 281 1.30e-56 184
MS.gene029764.t1 AT3G25050 36.466 266 153 5 38 295 33 290 2.00e-56 184
MS.gene029764.t1 AT4G25810 40.000 270 141 9 37 294 23 283 2.54e-56 183
MS.gene029764.t1 AT4G25820 41.729 266 136 9 39 294 29 285 5.74e-56 182
MS.gene029764.t1 AT4G30290 44.681 235 107 7 69 294 56 276 5.90e-56 182
MS.gene029764.t1 AT4G30280 44.681 235 107 7 69 294 61 281 1.68e-55 181
MS.gene029764.t1 AT4G03210 36.567 268 139 5 35 286 24 276 1.74e-55 181
MS.gene029764.t1 AT1G65310 44.589 231 113 7 69 294 61 281 3.53e-55 180
MS.gene029764.t1 AT4G13080 36.545 301 171 8 1 294 4 291 4.92e-55 180
MS.gene029764.t1 AT1G65310 44.589 231 113 7 69 294 83 303 5.49e-55 181
MS.gene029764.t1 AT5G13870 36.630 273 156 7 31 294 23 287 6.29e-55 180
MS.gene029764.t1 AT5G13870 36.630 273 156 7 31 294 23 287 6.29e-55 180
MS.gene029764.t1 AT5G13870 36.630 273 156 7 31 294 23 287 6.29e-55 180
MS.gene029764.t1 AT4G30270 39.098 266 137 8 35 294 19 265 9.27e-55 179
MS.gene029764.t1 AT2G14620 37.226 274 153 8 32 294 29 294 7.90e-54 177
MS.gene029764.t1 AT4G37800 38.806 268 147 6 36 294 30 289 1.05e-53 177
MS.gene029764.t1 AT2G06850 38.267 277 146 9 31 294 26 290 1.48e-53 177
MS.gene029764.t1 AT4G13090 37.248 298 160 7 7 294 8 288 6.42e-53 175
MS.gene029764.t1 AT2G18800 36.803 269 140 8 48 294 36 296 1.04e-52 175
MS.gene029764.t1 AT5G65730 36.567 268 153 7 36 294 31 290 1.29e-52 174
MS.gene029764.t1 AT2G06850 40.336 238 119 8 68 294 5 230 1.40e-50 167
MS.gene029764.t1 AT4G03210 37.200 250 123 6 61 294 25 256 4.28e-50 167
MS.gene029764.t1 AT2G14620 37.872 235 129 7 69 294 18 244 7.13e-49 163
MS.gene029764.t1 AT4G28850 35.581 267 152 5 40 294 29 287 2.78e-48 163
MS.gene029764.t1 AT2G14620 37.991 229 125 7 75 294 13 233 1.66e-47 159
MS.gene029764.t1 AT4G18990 38.208 212 105 5 104 294 32 238 6.15e-42 146
MS.gene029764.t1 AT3G48580 34.082 267 133 10 42 294 36 273 7.98e-40 140
MS.gene029764.t1 AT3G48580 34.034 238 119 8 68 294 4 214 2.65e-36 129
MS.gene029764.t1 AT3G48580 29.963 267 124 11 42 294 36 253 1.76e-24 99.8

Find 92 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGACCAATGTGGGTTTA+TGG 0.178750 1.2:-48069454 MS.gene029764:CDS
CTTCCTTGGGTACCTCCTTA+TGG 0.183924 1.2:+48069495 None:intergenic
GGCCACCTTCCCCTGGTTAC+TGG 0.192690 1.2:-48071384 MS.gene029764:CDS
TGTGGGTTTATGGTTCTATT+TGG 0.204208 1.2:-48069444 MS.gene029764:CDS
ACTATTGTCAAGATCCTAAA+AGG 0.217459 1.2:-48069204 MS.gene029764:CDS
ATCAACATGGAACAACAATT+TGG 0.259205 1.2:-48071285 MS.gene029764:CDS
TTCCTTGGGTACCTCCTTAT+GGG 0.266893 1.2:+48069496 None:intergenic
TTCATCACTATGCTATAGTT+TGG 0.290387 1.2:-48070634 MS.gene029764:CDS
AAGATTTAACCCCAACATTC+AGG 0.298689 1.2:+48069166 None:intergenic
ACATTTGTCTGCAAAGTATA+AGG 0.303238 1.2:+48070737 None:intergenic
CAATGGTTACAGAAACCTTT+GGG 0.316187 1.2:-48071329 MS.gene029764:CDS
CTCCTTCAAGCAATGCCTAT+TGG 0.332883 1.2:-48071405 MS.gene029764:CDS
GAAGTAGACATTGAATTTCT+AGG 0.341397 1.2:-48070776 MS.gene029764:CDS
GTGGGTTTATGGTTCTATTT+GGG 0.354310 1.2:-48069443 MS.gene029764:CDS
CAGACAAATGTTTATATAAG+AGG 0.361231 1.2:-48070725 MS.gene029764:CDS
TAGACTAACACCTGAATGTT+GGG 0.370136 1.2:-48069176 MS.gene029764:CDS
AACAATGTACAGATTCTTAG+TGG 0.388025 1.2:-48069527 MS.gene029764:intron
GAATTTCTAGGGACAACATT+TGG 0.388283 1.2:-48070764 MS.gene029764:CDS
TTCCATGTTGATCCATGCTT+TGG 0.388299 1.2:+48071296 None:intergenic
AATGTTGCATCACTCTTCCT+TGG 0.393842 1.2:+48069481 None:intergenic
GTGACTTACATTAATTCCTT+AGG 0.405222 1.2:+48070608 None:intergenic
AACATTCAGGTGTTAGTCTA+TGG 0.416142 1.2:+48069179 None:intergenic
TTTGTGTACTTTGCAACAAA+AGG 0.422740 1.2:+48069364 None:intergenic
TAAACCCACATTGGTCTTAG+TGG 0.431879 1.2:+48069457 None:intergenic
ACAATGGTTACAGAAACCTT+TGG 0.435161 1.2:-48071330 MS.gene029764:CDS
CGGCCACGGCCTCGCCGTAT+CGG 0.441815 1.2:-48069294 MS.gene029764:CDS
TGCAAAGTACACAAACTTCA+AGG 0.447145 1.2:-48069356 MS.gene029764:CDS
GCCTATTGGCCACCTTCCCC+TGG 0.450220 1.2:-48071391 MS.gene029764:CDS
CCAAAGTATCCCGATCGAAA+TGG 0.450711 1.2:+48071006 None:intergenic
CCATTTCGATCGGGATACTT+TGG 0.460496 1.2:-48071006 MS.gene029764:CDS
ACCAGGGGAAGGTGGCCAAT+AGG 0.463800 1.2:+48071390 None:intergenic
AACAACATTGGTCTATGACT+TGG 0.477924 1.2:-48069252 MS.gene029764:CDS
ATGTTGCATCACTCTTCCTT+GGG 0.478571 1.2:+48069482 None:intergenic
GGCCAATAGGCATTGCTTGA+AGG 0.480007 1.2:+48071403 None:intergenic
TCATCATGGGCAACAGAAGA+TGG 0.483074 1.2:-48069415 MS.gene029764:CDS
TCTAACAATGAAGCACATCC+AGG 0.487936 1.2:-48070809 MS.gene029764:CDS
TGCGTCGCGTTGGTGTCGTC+CGG 0.489754 1.2:-48069314 MS.gene029764:CDS
ACAACATTGGTCTATGACTT+GGG 0.490056 1.2:-48069251 MS.gene029764:CDS
TTGGAACTTGGCCAGTAACC+AGG 0.493648 1.2:+48071373 None:intergenic
TCTACTTCATCATGAAATCC+TGG 0.494735 1.2:+48070791 None:intergenic
GCGTTGGTGTCGTCCGGCCA+CGG 0.495474 1.2:-48069308 MS.gene029764:CDS
CTATTTGGGATGCTTCATCA+TGG 0.504142 1.2:-48069429 MS.gene029764:CDS
CTTCATCCTGGCTACACTGC+AGG 0.504351 1.2:-48070970 MS.gene029764:CDS
ATAGACCTGACTTTGGAACT+TGG 0.504684 1.2:+48071361 None:intergenic
ATTTGGCTTGATAGAACCTC+AGG 0.506453 1.2:-48071268 MS.gene029764:intron
ATAACTCCTGCAGTGTAGCC+AGG 0.507404 1.2:+48070964 None:intergenic
GCCTCGCCGTATCGGTCCGG+TGG 0.507497 1.2:-48069286 MS.gene029764:CDS
AAGTAGACATTGAATTTCTA+GGG 0.508075 1.2:-48070775 MS.gene029764:CDS
ACTGGCCAAGTTCCAAAGTC+AGG 0.515213 1.2:-48071366 MS.gene029764:CDS
ACGGCCTCGCCGTATCGGTC+CGG 0.518193 1.2:-48069289 MS.gene029764:CDS
TATATAAGAGGGAGTGGTGA+TGG 0.520979 1.2:-48070713 MS.gene029764:CDS
TAGTGGATGATATGCCCATA+AGG 0.525035 1.2:-48069510 MS.gene029764:CDS
CGATACGGCGAGGCCGTGGC+CGG 0.537351 1.2:+48069295 None:intergenic
AATGTTTATATAAGAGGGAG+TGG 0.539977 1.2:-48070719 MS.gene029764:CDS
GAGAAATGAAATTTCATCTG+TGG 0.540326 1.2:-48070676 MS.gene029764:CDS
GTCGAATAGTCCATTTCGAT+CGG 0.541510 1.2:-48071016 MS.gene029764:CDS
AAAGCTCATAGACCTGACTT+TGG 0.542912 1.2:+48071354 None:intergenic
TCGAATAGTCCATTTCGATC+GGG 0.543808 1.2:-48071015 MS.gene029764:CDS
AGACAAATGTTTATATAAGA+GGG 0.545157 1.2:-48070724 MS.gene029764:CDS
TGATCCATGCTTTGGTGCTG+AGG 0.547528 1.2:+48071304 None:intergenic
TATTTGGGATGCTTCATCAT+GGG 0.549893 1.2:-48069428 MS.gene029764:CDS
TGCTATAGTTTGGAATCCTA+AGG 0.550228 1.2:-48070624 MS.gene029764:CDS
GGACCGATACGGCGAGGCCG+TGG 0.552441 1.2:+48069291 None:intergenic
ATTTCCACTAAGACCAATGT+GGG 0.553604 1.2:-48069461 MS.gene029764:CDS
ATAGACTAACACCTGAATGT+TGG 0.559466 1.2:-48069177 MS.gene029764:CDS
TGTACTTTGCAACAAAAGGT+TGG 0.568903 1.2:+48069368 None:intergenic
GCACAGCCTATGCGTCGCGT+TGG 0.570367 1.2:-48069324 MS.gene029764:CDS
GGCCAGTAACCAGGGGAAGG+TGG 0.570410 1.2:+48071382 None:intergenic
GTCAACCCACCGGACCGATA+CGG 0.571686 1.2:+48069280 None:intergenic
ACGACACCAACGCGACGCAT+AGG 0.572730 1.2:+48069318 None:intergenic
TGGAACTTGGCCAGTAACCA+GGG 0.586133 1.2:+48071374 None:intergenic
GGGTCCTCAGCACCAAAGCA+TGG 0.591378 1.2:-48071308 MS.gene029764:CDS
CTATTGTCAAGATCCTAAAA+GGG 0.595880 1.2:-48069203 MS.gene029764:CDS
CCTCGCCGTATCGGTCCGGT+GGG 0.599396 1.2:-48069285 MS.gene029764:CDS
CTTGGCCAGTAACCAGGGGA+AGG 0.603822 1.2:+48071379 None:intergenic
TGCCCATAAGGAGGTACCCA+AGG 0.604081 1.2:-48069498 MS.gene029764:CDS
GCGTCGATTAAGCTTCATCC+TGG 0.606185 1.2:-48070982 MS.gene029764:CDS
TACACAAACTTCAAGGCTAG+TGG 0.607850 1.2:-48069349 MS.gene029764:CDS
TTGTTGTCTTGTCAACCCAC+CGG 0.610498 1.2:+48069270 None:intergenic
TTTGGTGCTGAGGACCCCAA+AGG 0.620328 1.2:+48071314 None:intergenic
TTGGGTTCAAAGACACCACA+TGG 0.626679 1.2:-48069233 MS.gene029764:CDS
CACCAAAGCATGGATCAACA+TGG 0.631601 1.2:-48071298 MS.gene029764:CDS
CTAGCAAAGAGAAATATCAA+AGG 0.639891 1.2:+48071442 None:intergenic
GGAACTTGGCCAGTAACCAG+GGG 0.650744 1.2:+48071375 None:intergenic
GGTTGACAAGACAACAACAT+TGG 0.653516 1.2:-48069264 MS.gene029764:CDS
ATAGAACCATAAACCCACAT+TGG 0.658123 1.2:+48069448 None:intergenic
CATTTCCACTAAGACCAATG+TGG 0.658778 1.2:-48069462 MS.gene029764:CDS
AGACTAACACCTGAATGTTG+GGG 0.661530 1.2:-48069175 MS.gene029764:CDS
AATGGTTACAGAAACCTTTG+GGG 0.669087 1.2:-48071328 MS.gene029764:CDS
GACAATAGTTATAAACCATG+TGG 0.677923 1.2:+48069218 None:intergenic
TGGATGATATGCCCATAAGG+AGG 0.688479 1.2:-48069507 MS.gene029764:CDS
CCCACCGGACCGATACGGCG+AGG 0.695099 1.2:+48069285 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAATAAATGAAATAAAA+TGG + chr1.2:48070360-48070379 None:intergenic 10.0%
!! TTATTTCATTTATTTATCAT+CGG - chr1.2:48070362-48070381 MS.gene029764:intron 10.0%
!!! AGTGATTTTTATTTTTATTT+TGG - chr1.2:48071007-48071026 MS.gene029764:CDS 10.0%
!!! CAATTTTAAATAATAAATCA+AGG + chr1.2:48070702-48070721 None:intergenic 10.0%
!!! TTTTTTTTATTTCAATCTAA+TGG - chr1.2:48070807-48070826 MS.gene029764:CDS 10.0%
!! AAAAATTCAATAATGTAACT+TGG - chr1.2:48070482-48070501 MS.gene029764:intron 15.0%
!! AAAATTCAATAATGTAACTT+GGG - chr1.2:48070483-48070502 MS.gene029764:intron 15.0%
!! AAATAAAAATCACTTTCATA+TGG + chr1.2:48071001-48071020 None:intergenic 15.0%
!! AGGATAGTTTATTAAAAATA+AGG - chr1.2:48070317-48070336 MS.gene029764:intron 15.0%
!! TTATTCCCAAAAAAAAAAAA+TGG - chr1.2:48070879-48070898 MS.gene029764:intron 15.0%
!! TTCAAAGAAAATGATATTAT+TGG + chr1.2:48070613-48070632 None:intergenic 15.0%
!!! AAAAAAATGAAGTTGATTAA+TGG - chr1.2:48069720-48069739 MS.gene029764:intron 15.0%
!!! CATTTTTCTTTCTAATTATT+AGG - chr1.2:48069571-48069590 MS.gene029764:intron 15.0%
!!! GTGAAACTAATTTTATAATA+AGG + chr1.2:48070957-48070976 None:intergenic 15.0%
!!! TAATTTTATAATAAGGTATG+CGG + chr1.2:48070950-48070969 None:intergenic 15.0%
!! AGACAAATGTTTATATAAGA+GGG - chr1.2:48069898-48069917 MS.gene029764:intron 20.0%
!!! AGTTATTTCGAAAATTACAA+TGG - chr1.2:48069473-48069492 MS.gene029764:CDS 20.0%
!!! GATCTACATGTAATTTTTTA+TGG - chr1.2:48070920-48070939 MS.gene029764:intron 20.0%
!!! TAGTGCCATTTTTTTTTTTT+GGG + chr1.2:48070887-48070906 None:intergenic 20.0%
!!! TTAGTGCCATTTTTTTTTTT+TGG + chr1.2:48070888-48070907 None:intergenic 20.0%
! AAACTATCCTTATAAACTTG+TGG + chr1.2:48070307-48070326 None:intergenic 25.0%
! AAGTAGACATTGAATTTCTA+GGG - chr1.2:48069847-48069866 MS.gene029764:intron 25.0%
! CAGACAAATGTTTATATAAG+AGG - chr1.2:48069897-48069916 MS.gene029764:intron 25.0%
! GAAATAACCACAAGTTTATA+AGG - chr1.2:48070297-48070316 MS.gene029764:intron 25.0%
! GAGACATTTCACTTAATAAA+TGG - chr1.2:48070098-48070117 MS.gene029764:intron 25.0%
! GGAACCTTACTAATTATAAA+TGG - chr1.2:48070845-48070864 MS.gene029764:intron 25.0%
! GTTTGATTCTTACAGAATAT+AGG - chr1.2:48070530-48070549 MS.gene029764:intron 25.0%
! TCAAAAAAGTAGAGCATATA+GGG - chr1.2:48070408-48070427 MS.gene029764:intron 25.0%
! TCTATCTACTGGAAAAATTA+TGG - chr1.2:48069417-48069436 MS.gene029764:CDS 25.0%
! TCTTTCTAATTATTAGGAAG+TGG - chr1.2:48069577-48069596 MS.gene029764:intron 25.0%
! TTAAAGTTTCAGCAAAATCA+TGG + chr1.2:48069448-48069467 None:intergenic 25.0%
! TTCAAAAAAGTAGAGCATAT+AGG - chr1.2:48070407-48070426 MS.gene029764:intron 25.0%
!! AAATGAAGTTGATTAATGGA+AGG - chr1.2:48069724-48069743 MS.gene029764:intron 25.0%
!! CTTAAATGTGACACTTTTAA+GGG + chr1.2:48070244-48070263 None:intergenic 25.0%
!! CTTTGCTAGTATATTCTTTT+TGG - chr1.2:48069194-48069213 MS.gene029764:CDS 25.0%
!! TCTTAAATGTGACACTTTTA+AGG + chr1.2:48070245-48070264 None:intergenic 25.0%
!! TTTTCTGCTGAAACATAATA+GGG - chr1.2:48070445-48070464 MS.gene029764:intron 25.0%
!! TTTTTCTGCTGAAACATAAT+AGG - chr1.2:48070444-48070463 MS.gene029764:intron 25.0%
!!! AGCATAGTGATGAAATTTTT+TGG + chr1.2:48069982-48070001 None:intergenic 25.0%
!!! AGTGCCATTTATAATTAGTA+AGG + chr1.2:48070852-48070871 None:intergenic 25.0%
!!! TAGTGATGAAATTTTTTGGT+AGG + chr1.2:48069978-48069997 None:intergenic 25.0%
AACAATGTACAGATTCTTAG+TGG - chr1.2:48071095-48071114 MS.gene029764:intron 30.0%
AATGTTTATATAAGAGGGAG+TGG - chr1.2:48069903-48069922 MS.gene029764:intron 30.0%
ACATTTGTCTGCAAAGTATA+AGG + chr1.2:48069888-48069907 None:intergenic 30.0%
ACTATTGTCAAGATCCTAAA+AGG - chr1.2:48071418-48071437 MS.gene029764:CDS 30.0%
ATATGGCTGCAATTGTATAA+TGG + chr1.2:48070984-48071003 None:intergenic 30.0%
ATCAACATGGAACAACAATT+TGG - chr1.2:48069337-48069356 MS.gene029764:CDS 30.0%
ATCTACTGGAAAAATTATGG+TGG - chr1.2:48069420-48069439 MS.gene029764:CDS 30.0%
ATGTCTCTTATAGTTGAGAT+CGG + chr1.2:48070085-48070104 None:intergenic 30.0%
ATTTCGAAAATTACAATGGC+CGG - chr1.2:48069477-48069496 MS.gene029764:CDS 30.0%
CTAATGGTCATGATATTGAA+GGG - chr1.2:48070823-48070842 MS.gene029764:intron 30.0%
CTAGCAAAGAGAAATATCAA+AGG + chr1.2:48069183-48069202 None:intergenic 30.0%
CTATTGTCAAGATCCTAAAA+GGG - chr1.2:48071419-48071438 MS.gene029764:CDS 30.0%
GAAGTAGACATTGAATTTCT+AGG - chr1.2:48069846-48069865 MS.gene029764:intron 30.0%
GACAATAGTTATAAACCATG+TGG + chr1.2:48071407-48071426 None:intergenic 30.0%
GAGAAATGAAATTTCATCTG+TGG - chr1.2:48069946-48069965 MS.gene029764:intron 30.0%
GTGACTTACATTAATTCCTT+AGG + chr1.2:48070017-48070036 None:intergenic 30.0%
TAATGGTCATGATATTGAAG+GGG - chr1.2:48070824-48070843 MS.gene029764:intron 30.0%
TCTAATGGTCATGATATTGA+AGG - chr1.2:48070822-48070841 MS.gene029764:intron 30.0%
TGACGATTATTATACGATGT+CGG + chr1.2:48070207-48070226 None:intergenic 30.0%
TTCAGCAGAAAAAGAAATGT+TGG + chr1.2:48070437-48070456 None:intergenic 30.0%
TTCATCACTATGCTATAGTT+TGG - chr1.2:48069988-48070007 MS.gene029764:intron 30.0%
TTTATAATAAGGTATGCGGT+TGG + chr1.2:48070946-48070965 None:intergenic 30.0%
TTTGTGTACTTTGCAACAAA+AGG + chr1.2:48071261-48071280 None:intergenic 30.0%
! ACGAATGATTGACATTTTGT+AGG - chr1.2:48070571-48070590 MS.gene029764:intron 30.0%
! TGACATTTTGTAGGATGAAA+TGG - chr1.2:48070580-48070599 MS.gene029764:intron 30.0%
!! AGTGGTGATGGAAAAATTAT+AGG - chr1.2:48069921-48069940 MS.gene029764:intron 30.0%
AATGGTTACAGAAACCTTTG+GGG - chr1.2:48069294-48069313 MS.gene029764:CDS 35.0%
ACAATGGTTACAGAAACCTT+TGG - chr1.2:48069292-48069311 MS.gene029764:CDS 35.0%
ACTAATCAGATTCATACCTG+AGG + chr1.2:48069373-48069392 None:intergenic 35.0%
AGTGTAGATACTCTATCTAC+TGG - chr1.2:48069406-48069425 MS.gene029764:CDS 35.0%
ATAGAACCATAAACCCACAT+TGG + chr1.2:48071177-48071196 None:intergenic 35.0%
ATAGACTAACACCTGAATGT+TGG - chr1.2:48071445-48071464 MS.gene029764:CDS 35.0%
ATTTCCACTAAGACCAATGT+GGG - chr1.2:48071161-48071180 MS.gene029764:intron 35.0%
CAATGGTTACAGAAACCTTT+GGG - chr1.2:48069293-48069312 MS.gene029764:CDS 35.0%
GCTGCAATTGTATAATGGTA+TGG + chr1.2:48070979-48070998 None:intergenic 35.0%
TAGACTAACACCTGAATGTT+GGG - chr1.2:48071446-48071465 MS.gene029764:CDS 35.0%
TCTACTTCATCATGAAATCC+TGG + chr1.2:48069834-48069853 None:intergenic 35.0%
TGCAAAGTACACAAACTTCA+AGG - chr1.2:48071266-48071285 MS.gene029764:intron 35.0%
TGTACTTTGCAACAAAAGGT+TGG + chr1.2:48071257-48071276 None:intergenic 35.0%
TTCACGAAATCAAATTGTGC+CGG + chr1.2:48069499-48069518 None:intergenic 35.0%
! AACAACATTGGTCTATGACT+TGG - chr1.2:48071370-48071389 MS.gene029764:CDS 35.0%
! AACATTCAGGTGTTAGTCTA+TGG + chr1.2:48071446-48071465 None:intergenic 35.0%
! ACAACATTGGTCTATGACTT+GGG - chr1.2:48071371-48071390 MS.gene029764:CDS 35.0%
! AGGTCTATGAGCTTTTACAA+TGG - chr1.2:48069276-48069295 MS.gene029764:CDS 35.0%
! GAATTTCTAGGGACAACATT+TGG - chr1.2:48069858-48069877 MS.gene029764:intron 35.0%
! GTGGGTTTATGGTTCTATTT+GGG - chr1.2:48071179-48071198 MS.gene029764:intron 35.0%
! TATTTGGGATGCTTCATCAT+GGG - chr1.2:48071194-48071213 MS.gene029764:intron 35.0%
! TGCTATAGTTTGGAATCCTA+AGG - chr1.2:48069998-48070017 MS.gene029764:intron 35.0%
! TGTGGGTTTATGGTTCTATT+TGG - chr1.2:48071178-48071197 MS.gene029764:intron 35.0%
AAAGCTCATAGACCTGACTT+TGG + chr1.2:48069271-48069290 None:intergenic 40.0%
AATGTTGCATCACTCTTCCT+TGG + chr1.2:48071144-48071163 None:intergenic 40.0%
AGACTAACACCTGAATGTTG+GGG - chr1.2:48071447-48071466 MS.gene029764:CDS 40.0%
ATGTTGCATCACTCTTCCTT+GGG + chr1.2:48071143-48071162 None:intergenic 40.0%
CATTTCCACTAAGACCAATG+TGG - chr1.2:48071160-48071179 MS.gene029764:intron 40.0%
CTAAGACCAATGTGGGTTTA+TGG - chr1.2:48071168-48071187 MS.gene029764:intron 40.0%
CTCTTATAGTTGAGATCGGA+GGG + chr1.2:48070081-48070100 None:intergenic 40.0%
GGTTGACAAGACAACAACAT+TGG - chr1.2:48071358-48071377 MS.gene029764:CDS 40.0%
GTCGAATAGTCCATTTCGAT+CGG - chr1.2:48069606-48069625 MS.gene029764:intron 40.0%
TACACAAACTTCAAGGCTAG+TGG - chr1.2:48071273-48071292 MS.gene029764:CDS 40.0%
TATATAAGAGGGAGTGGTGA+TGG - chr1.2:48069909-48069928 MS.gene029764:intron 40.0%
TCGAATAGTCCATTTCGATC+GGG - chr1.2:48069607-48069626 MS.gene029764:intron 40.0%
TCTAACAATGAAGCACATCC+AGG - chr1.2:48069813-48069832 MS.gene029764:intron 40.0%
TCTCTTATAGTTGAGATCGG+AGG + chr1.2:48070082-48070101 None:intergenic 40.0%
TTCCATGTTGATCCATGCTT+TGG + chr1.2:48069329-48069348 None:intergenic 40.0%
! CTATTTGGGATGCTTCATCA+TGG - chr1.2:48071193-48071212 MS.gene029764:intron 40.0%
! TAGTGGATGATATGCCCATA+AGG - chr1.2:48071112-48071131 MS.gene029764:intron 40.0%
!! ATAGACCTGACTTTGGAACT+TGG + chr1.2:48069264-48069283 None:intergenic 40.0%
!! ATTTGGCTTGATAGAACCTC+AGG - chr1.2:48069354-48069373 MS.gene029764:CDS 40.0%
!! GTTAGTCTATGGTCCCTTTT+AGG + chr1.2:48071435-48071454 None:intergenic 40.0%
!! TAAACCCACATTGGTCTTAG+TGG + chr1.2:48071168-48071187 None:intergenic 40.0%
CACCAAAGCATGGATCAACA+TGG - chr1.2:48069324-48069343 MS.gene029764:CDS 45.0%
CCATTTCGATCGGGATACTT+TGG - chr1.2:48069616-48069635 MS.gene029764:intron 45.0%
CTCCTTCAAGCAATGCCTAT+TGG - chr1.2:48069217-48069236 MS.gene029764:CDS 45.0%
TCATCATGGGCAACAGAAGA+TGG - chr1.2:48071207-48071226 MS.gene029764:intron 45.0%
TGGATGATATGCCCATAAGG+AGG - chr1.2:48071115-48071134 MS.gene029764:intron 45.0%
TTCCTTGGGTACCTCCTTAT+GGG + chr1.2:48071129-48071148 None:intergenic 45.0%
TTGGGTTCAAAGACACCACA+TGG - chr1.2:48071389-48071408 MS.gene029764:CDS 45.0%
TTGTTGTCTTGTCAACCCAC+CGG + chr1.2:48071355-48071374 None:intergenic 45.0%
! CCAAAGTATCCCGATCGAAA+TGG + chr1.2:48069619-48069638 None:intergenic 45.0%
ACTGGCCAAGTTCCAAAGTC+AGG - chr1.2:48069256-48069275 MS.gene029764:CDS 50.0%
ATAACTCCTGCAGTGTAGCC+AGG + chr1.2:48069661-48069680 None:intergenic 50.0%
CTTCCTTGGGTACCTCCTTA+TGG + chr1.2:48071130-48071149 None:intergenic 50.0%
TAGTTGAGATCGGAGGGAGT+AGG + chr1.2:48070075-48070094 None:intergenic 50.0%
TGGAACTTGGCCAGTAACCA+GGG + chr1.2:48069251-48069270 None:intergenic 50.0%
TTGGAACTTGGCCAGTAACC+AGG + chr1.2:48069252-48069271 None:intergenic 50.0%
! GGCCAATAGGCATTGCTTGA+AGG + chr1.2:48069222-48069241 None:intergenic 50.0%
!! GCGTCGATTAAGCTTCATCC+TGG - chr1.2:48069640-48069659 MS.gene029764:intron 50.0%
!! TGATCCATGCTTTGGTGCTG+AGG + chr1.2:48069321-48069340 None:intergenic 50.0%
CTTCATCCTGGCTACACTGC+AGG - chr1.2:48069652-48069671 MS.gene029764:intron 55.0%
GGAACTTGGCCAGTAACCAG+GGG + chr1.2:48069250-48069269 None:intergenic 55.0%
!! TGCCCATAAGGAGGTACCCA+AGG - chr1.2:48071124-48071143 MS.gene029764:intron 55.0%
!! TTTGGTGCTGAGGACCCCAA+AGG + chr1.2:48069311-48069330 None:intergenic 55.0%
ACCAGGGGAAGGTGGCCAAT+AGG + chr1.2:48069235-48069254 None:intergenic 60.0%
ACGACACCAACGCGACGCAT+AGG + chr1.2:48071307-48071326 None:intergenic 60.0%
CTTGGCCAGTAACCAGGGGA+AGG + chr1.2:48069246-48069265 None:intergenic 60.0%
GGGTCCTCAGCACCAAAGCA+TGG - chr1.2:48069314-48069333 MS.gene029764:CDS 60.0%
GTCAACCCACCGGACCGATA+CGG + chr1.2:48071345-48071364 None:intergenic 60.0%
GCACAGCCTATGCGTCGCGT+TGG - chr1.2:48071298-48071317 MS.gene029764:CDS 65.0%
GCCTATTGGCCACCTTCCCC+TGG - chr1.2:48069231-48069250 MS.gene029764:CDS 65.0%
GGCCACCTTCCCCTGGTTAC+TGG - chr1.2:48069238-48069257 MS.gene029764:CDS 65.0%
GGCCAGTAACCAGGGGAAGG+TGG + chr1.2:48069243-48069262 None:intergenic 65.0%
!! TGCGTCGCGTTGGTGTCGTC+CGG - chr1.2:48071308-48071327 MS.gene029764:CDS 65.0%
! ACGGCCTCGCCGTATCGGTC+CGG - chr1.2:48071333-48071352 MS.gene029764:CDS 70.0%
! CCTCGCCGTATCGGTCCGGT+GGG - chr1.2:48071337-48071356 MS.gene029764:CDS 70.0%
!! GCGTTGGTGTCGTCCGGCCA+CGG - chr1.2:48071314-48071333 MS.gene029764:CDS 70.0%
CCCACCGGACCGATACGGCG+AGG + chr1.2:48071340-48071359 None:intergenic 75.0%
CGATACGGCGAGGCCGTGGC+CGG + chr1.2:48071330-48071349 None:intergenic 75.0%
CGGCCACGGCCTCGCCGTAT+CGG - chr1.2:48071328-48071347 MS.gene029764:CDS 75.0%
GGACCGATACGGCGAGGCCG+TGG + chr1.2:48071334-48071353 None:intergenic 75.0%
! GCCTCGCCGTATCGGTCCGG+TGG - chr1.2:48071336-48071355 MS.gene029764:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 48069171 48071473 48069171 ID=MS.gene029764
chr1.2 mRNA 48069171 48071473 48069171 ID=MS.gene029764.t1;Parent=MS.gene029764
chr1.2 exon 48071269 48071473 48071269 ID=MS.gene029764.t1.exon1;Parent=MS.gene029764.t1
chr1.2 CDS 48071269 48071473 48071269 ID=cds.MS.gene029764.t1;Parent=MS.gene029764.t1
chr1.2 exon 48070951 48071051 48070951 ID=MS.gene029764.t1.exon2;Parent=MS.gene029764.t1
chr1.2 CDS 48070951 48071051 48070951 ID=cds.MS.gene029764.t1;Parent=MS.gene029764.t1
chr1.2 exon 48070617 48070834 48070617 ID=MS.gene029764.t1.exon3;Parent=MS.gene029764.t1
chr1.2 CDS 48070617 48070834 48070617 ID=cds.MS.gene029764.t1;Parent=MS.gene029764.t1
chr1.2 exon 48069171 48069537 48069171 ID=MS.gene029764.t1.exon4;Parent=MS.gene029764.t1
chr1.2 CDS 48069171 48069537 48069171 ID=cds.MS.gene029764.t1;Parent=MS.gene029764.t1
Gene Sequence

>MS.gene029764

ATGGCTTTTCCTTTGATATTTCTCTTTGCTAGTATATTCTTTTTGGCTCCTTCAAGCAATGCCTATTGGCCACCTTCCCCTGGTTACTGGCCAAGTTCCAAAGTCAGGTCTATGAGCTTTTACAATGGTTACAGAAACCTTTGGGGTCCTCAGCACCAAAGCATGGATCAACATGGAACAACAATTTGGCTTGATAGAACCTCAGGTATGAATCTGATTAGTTTCGATTCACGTTAGTGTAGATACTCTATCTACTGGAAAAATTATGGTGGTACCATGATTTTGCTGAAACTTTAAAGTGTAGTTATTTCGAAAATTACAATGGCCGGCACAATTTGATTTCGTGAAACTTACTGCGAATTCAAACATGCACAAAATATATCATTGACATGTAACACTACATTTTTCTTTCTAATTATTAGGAAGTGGATTCAAGTCGAATAGTCCATTTCGATCGGGATACTTTGGCGCGTCGATTAAGCTTCATCCTGGCTACACTGCAGGAGTTATAACAGCTTTTTATGTAAGATTAAGATATGATCATGATTAAAAAAAATGAAGTTGATTAATGGAAGGTTAAACATTTTTTTTTTAATTTGAGTTTGTGATAAATTTTACTAATGAGTTGATTAATTGCAGCTTTCTAACAATGAAGCACATCCAGGATTTCATGATGAAGTAGACATTGAATTTCTAGGGACAACATTTGGAAAGCCTTATACTTTGCAGACAAATGTTTATATAAGAGGGAGTGGTGATGGAAAAATTATAGGCAGAGAAATGAAATTTCATCTGTGGTTTGATCCTACCAAAAAATTTCATCACTATGCTATAGTTTGGAATCCTAAGGAATTAATGTAAGTCACTATCAATTTTTACTCTATATTAATACTCTTTCGATCCTACTCCCTCCGATCTCAACTATAAGAGACATTTCACTTAATAAATGGTATTGTTTCTAGTTTCTAATATTGATTAGATACATAATTTATTGAATGAATTAAAAAAAATTAATTTTTTCTTATAATTGAGACCGACATCGTATAATAATCGTCACAGAAAAAATTTATCCCTTAAAAGTGTCACATTTAAGATATTATTTTTCACTTTTGTATTTATAATAATTGAAATAACCACAAGTTTATAAGGATAGTTTATTAAAAATAAGGATAGTTTATTAAAATTACCATTTTATTTCATTTATTTATCATCGGTTAGACTTTATTTTTGTGCTAGTTCAAAAAAGTAGAGCATATAGGGTAGCCAACATTTCTTTTTCTGCTGAAACATAATAGGGTAGATAATAACAAAAAAAATTCAATAATGTAACTTGGGTCTCTGTCTGTGTCATATTGATTTGTTTGATTCTTACAGAATATAGGTAATACAACAGTGTATGCACGAATGATTGACATTTTGTAGGATGAAATGGAAGTAAACCAATAATATCATTTTCTTTGAAAAAAAATATATCATTTTCTTTGAAATTAAAGAATGTGACAATAGAAGTATAATCTTTTTTATTATTCCTTGATTTATTATTTAAAATTGATAAACGATTTTGATATTTTTTTTAGTAATAAAAAAACGATAGAGATTTATATTACTAAATTTTAATCATAACAATTCTTTTTTTTTTTTTTTATTTCAATCTAATGGTCATGATATTGAAGGGGAACCTTACTAATTATAAATGGCACTAATAACATTATTCCCAAAAAAAAAAAATGGCACTAATAACAATCTAGTGATCTACATGTAATTTTTTATGGCCAACCGCATACCTTATTATAAAATTAGTTTCACCATACCATTATACAATTGCAGCCATATGAAAGTGATTTTTATTTTTATTTTGGTATAGTGAAGTGATTTTTATTAACTTGTTTTTGTAATATATTTTATTTAACGTACATTATAATTAAACAATGTACAGATTCTTAGTGGATGATATGCCCATAAGGAGGTACCCAAGGAAGAGTGATGCAACATTTCCACTAAGACCAATGTGGGTTTATGGTTCTATTTGGGATGCTTCATCATGGGCAACAGAAGATGGAAAATACAAAGCTGATTACAAGTACCAACCTTTTGTTGCAAAGTACACAAACTTCAAGGCTAGTGGTTGCACAGCCTATGCGTCGCGTTGGTGTCGTCCGGCCACGGCCTCGCCGTATCGGTCCGGTGGGTTGACAAGACAACAACATTGGTCTATGACTTGGGTTCAAAGACACCACATGGTTTATAACTATTGTCAAGATCCTAAAAGGGACCATAGACTAACACCTGAATGTTGGGGTTAA
Protein sequence

>MS.gene029764.t1

MAFPLIFLFASIFFLAPSSNAYWPPSPGYWPSSKVRSMSFYNGYRNLWGPQHQSMDQHGTTIWLDRTSGSGFKSNSPFRSGYFGASIKLHPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKKFHHYAIVWNPKELIFLVDDMPIRRYPRKSDATFPLRPMWVYGSIWDASSWATEDGKYKADYKYQPFVAKYTNFKASGCTAYASRWCRPATASPYRSGGLTRQQHWSMTWVQRHHMVYNYCQDPKRDHRLTPECWG