AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030247

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030247.t1 MTR_4g124790 97.183 213 5 1 1 213 10 221 2.71e-150 416
MS.gene030247.t1 MTR_7g105830 30.052 193 113 6 42 213 38 229 2.84e-15 72.8
MS.gene030247.t1 MTR_1g105090 32.168 143 88 3 79 213 90 231 9.44e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030247.t1 AT3G26060 78.771 179 35 1 34 212 40 215 2.86e-99 287
MS.gene030247.t1 AT3G26060 78.333 180 35 2 34 212 40 216 2.11e-97 282
MS.gene030247.t1 AT3G26060 85.135 148 22 0 65 212 6 153 2.04e-94 272
MS.gene030247.t1 AT5G06290 34.177 158 88 5 69 213 83 237 3.57e-18 80.5
MS.gene030247.t1 AT5G06290 35.256 156 89 4 69 213 83 237 4.67e-18 80.5
MS.gene030247.t1 AT3G11630 33.974 156 91 4 69 213 76 230 4.56e-17 77.8

Find 56 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCACTCAACAAGGTAAA+TGG 0.285138 8.2:+8264873 None:intergenic
CACAGGTTTCCCTTTGTACT+TGG 0.303836 8.2:+8266388 None:intergenic
GGAGTGCCTGGCGATTTCTT+TGG 0.309530 8.2:-8264825 MS.gene030247:CDS
AAATGGAAGCTTGTACTTCT+TGG 0.312396 8.2:+8264890 None:intergenic
TACGGAAGCATTAAAGGCTT+TGG 0.346601 8.2:+8264691 None:intergenic
GATTTCTTTGGATCATTGCC+TGG 0.346798 8.2:-8264813 MS.gene030247:CDS
AATTGGTAGGGAGAGTGATC+AGG 0.347523 8.2:+8266722 None:intergenic
GCAGAGGTTGTTGGGATAAG+TGG 0.361226 8.2:-8265012 MS.gene030247:CDS
CTCTTCATCTTCCATGGCTA+AGG 0.389484 8.2:-8266749 None:intergenic
GACTCACTGTCTTGCCATCC+TGG 0.400499 8.2:+8266414 None:intergenic
CTTACCTGTTTGGTACAGCC+AGG 0.410343 8.2:+8266335 None:intergenic
AAGCAGGAGCAGAGGTTGTT+GGG 0.412350 8.2:-8265020 MS.gene030247:CDS
AGGTGTAGAAGAAGTGGTTT+TGG 0.413165 8.2:+8266597 None:intergenic
CAGCCAGGGGTCTCATCAGC+AGG 0.442678 8.2:+8266350 None:intergenic
AAGGCTTTGGAGTAGTTTCA+AGG 0.453537 8.2:+8264704 None:intergenic
AATAAATGTGGGGAAAGAAT+TGG 0.464668 8.2:+8266705 None:intergenic
AGGAAAGAGTGGGGAGTGCC+TGG 0.465381 8.2:-8264837 MS.gene030247:CDS
AAAGCAGGAGCAGAGGTTGT+TGG 0.469493 8.2:-8265021 MS.gene030247:CDS
TACCCTGCTGATGAGACCCC+TGG 0.472668 8.2:-8266353 MS.gene030247:CDS
ACACCTTCTTCGTTCAAAAG+AGG 0.473477 8.2:-8266580 MS.gene030247:CDS
ATTGGTAGGGAGAGTGATCA+GGG 0.476674 8.2:+8266723 None:intergenic
GACCCCTGGCTGTACCAAAC+AGG 0.480415 8.2:-8266339 MS.gene030247:intron
TTACCTGTTTGGTACAGCCA+GGG 0.504190 8.2:+8266336 None:intergenic
TATGAGAAGTTCAAGAAAGC+AGG 0.505377 8.2:-8265036 MS.gene030247:CDS
CGAAGAAGGTGTAGAAGAAG+TGG 0.514867 8.2:+8266591 None:intergenic
TGAGTCTCTCCAAGTACAAA+GGG 0.527088 8.2:-8266397 MS.gene030247:CDS
TTTACCTTGTTGAGTGATGA+GGG 0.533791 8.2:-8264870 MS.gene030247:CDS
ATTTACCTTGTTGAGTGATG+AGG 0.534596 8.2:-8264871 MS.gene030247:CDS
AATGATCCAAAGAAATCGCC+AGG 0.551351 8.2:+8264819 None:intergenic
GCAAATGAGCAGGTGAGTAA+AGG 0.552307 8.2:-8266467 MS.gene030247:intron
ATTTCTTTGGATCATTGCCT+GGG 0.553738 8.2:-8264812 MS.gene030247:CDS
TGGTCTTTCAACGTGAAAGC+CGG 0.553851 8.2:+8266434 None:intergenic
TAACAAGGTAAGGAAAGAGT+GGG 0.554128 8.2:-8264847 MS.gene030247:CDS
GGCTTTCACGTTGAAAGACC+AGG 0.554297 8.2:-8266432 MS.gene030247:CDS
GTTCAAGAAAGCAGGAGCAG+AGG 0.567377 8.2:-8265028 MS.gene030247:CDS
ATATGAATCCCTAAAAGCGC+AGG 0.567632 8.2:+8265056 None:intergenic
GTGATGAGGGTAACAAGGTA+AGG 0.567983 8.2:-8264857 MS.gene030247:CDS
ATGTGGGGAAAGAATTGGTA+GGG 0.570965 8.2:+8266710 None:intergenic
TACCTGTTTGGTACAGCCAG+GGG 0.571231 8.2:+8266337 None:intergenic
GAGTAAAGGTTCAAAGCCAC+CGG 0.580619 8.2:-8266453 MS.gene030247:CDS
TCTTTCAACGTGAAAGCCGG+TGG 0.591762 8.2:+8266437 None:intergenic
GTAACAAGGTAAGGAAAGAG+TGG 0.594096 8.2:-8264848 MS.gene030247:CDS
GTGAGTCTCTCCAAGTACAA+AGG 0.604417 8.2:-8266398 MS.gene030247:CDS
GGGTAGAAATAAACAACCAC+AGG 0.604779 8.2:+8266371 None:intergenic
GATCAGGGAAACCTTAGCCA+TGG 0.605970 8.2:+8266738 None:intergenic
AGAACATAAGTCTCTCTCCC+AGG 0.610669 8.2:+8264795 None:intergenic
TGGAAGAATGGGATAACTTG+AGG 0.612538 8.2:+8266623 None:intergenic
AATGTGGGGAAAGAATTGGT+AGG 0.616864 8.2:+8266709 None:intergenic
GTTGAGTGATGAGGGTAACA+AGG 0.618582 8.2:-8264862 MS.gene030247:CDS
AACAAGGTAAGGAAAGAGTG+GGG 0.648925 8.2:-8264846 MS.gene030247:CDS
AGACGATTCTTCCTCTCACA+AGG 0.659575 8.2:-8264989 MS.gene030247:intron
AGCCAGGGGTCTCATCAGCA+GGG 0.668167 8.2:+8266351 None:intergenic
GTTACCCTCATCACTCAACA+AGG 0.674521 8.2:+8264866 None:intergenic
TTCACGTTGAAAGACCAGGA+TGG 0.687451 8.2:-8266428 MS.gene030247:CDS
CAAGTACAAAGGGAAACCTG+TGG 0.709350 8.2:-8266387 MS.gene030247:CDS
TTTGAGGGTGAATAAATGTG+GGG 0.731556 8.2:+8266695 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTGTTTACCTAAAT+AGG - chr8.2:8265912-8265931 MS.gene030247:intron 15.0%
!! AATAATCAGTAGATAAATAT+TGG + chr8.2:8266207-8266226 None:intergenic 15.0%
!! TAATGTTTATAATCCATAAA+TGG - chr8.2:8265166-8265185 MS.gene030247:intron 15.0%
!!! TTTTATGAATTTATTATTGC+AGG - chr8.2:8266358-8266377 MS.gene030247:CDS 15.0%
!! CCAAAAAATAAAGAATTGAA+TGG + chr8.2:8264794-8264813 None:intergenic 20.0%
!!! CAATGTATTGGTTAATTAAT+TGG + chr8.2:8266508-8266527 None:intergenic 20.0%
!!! CCATTCAATTCTTTATTTTT+TGG - chr8.2:8264791-8264810 MS.gene030247:CDS 20.0%
!!! TCATAACTACTTTTTGTAAT+AGG - chr8.2:8265484-8265503 MS.gene030247:intron 20.0%
!!! TGATATAATTGATTCCAATA+TGG - chr8.2:8266274-8266293 MS.gene030247:intron 20.0%
! AAACAATGCATATCCATTTA+TGG + chr8.2:8265182-8265201 None:intergenic 25.0%
! ACTTATGTTCTTGACAAAAA+TGG - chr8.2:8266654-8266673 MS.gene030247:CDS 25.0%
! ATGAATCAATAGATCATAGT+TGG - chr8.2:8265812-8265831 MS.gene030247:intron 25.0%
! ATTGTTTGTTCTAGTGAAAA+GGG - chr8.2:8265195-8265214 MS.gene030247:intron 25.0%
! GCAAATACTTGATATAGTTA+AGG - chr8.2:8266329-8266348 MS.gene030247:intron 25.0%
! TAACTAATTAACTTCCCAAA+AGG + chr8.2:8265412-8265431 None:intergenic 25.0%
! TTATGTTAGATTGTTAGAGT+TGG - chr8.2:8265244-8265263 MS.gene030247:intron 25.0%
!! AAAATTAAGTCAGTGCTATT+AGG - chr8.2:8265767-8265786 MS.gene030247:intron 25.0%
!! AAATTAAGTCAGTGCTATTA+GGG - chr8.2:8265768-8265787 MS.gene030247:intron 25.0%
!! AATTGATTCCAATATGGTAA+AGG - chr8.2:8266280-8266299 MS.gene030247:intron 25.0%
!! ATCATAGTTGGTATATATGT+TGG - chr8.2:8265824-8265843 MS.gene030247:intron 25.0%
!!! AATTTGTTGGTTAAGTTAGT+CGG - chr8.2:8265441-8265460 MS.gene030247:intron 25.0%
!!! TAAAGCAATTCTAAAATGTG+TGG + chr8.2:8266141-8266160 None:intergenic 25.0%
!!! TTTTGGGAAGTTAATTAGTT+AGG - chr8.2:8265411-8265430 MS.gene030247:intron 25.0%
AAGACTAATATTCTGGGTAA+TGG + chr8.2:8265669-8265688 None:intergenic 30.0%
AATAAATGTGGGGAAAGAAT+TGG + chr8.2:8264735-8264754 None:intergenic 30.0%
AATATTCATTGTCATTGCAC+CGG + chr8.2:8265875-8265894 None:intergenic 30.0%
ACATATGTACAAGACTTTCA+AGG + chr8.2:8265615-8265634 None:intergenic 30.0%
AGATAGCAAGACTAATATTC+TGG + chr8.2:8265676-8265695 None:intergenic 30.0%
ATTGTTTACCTAAATAGGAC+AGG - chr8.2:8265917-8265936 MS.gene030247:intron 30.0%
CAACCATGCAACAATAATTT+GGG - chr8.2:8265696-8265715 MS.gene030247:intron 30.0%
CAATAAATTCAAAATGCAGG+TGG + chr8.2:8264950-8264969 None:intergenic 30.0%
CAATACATTGCATGAAATGT+AGG - chr8.2:8266518-8266537 MS.gene030247:intron 30.0%
CATTGTTTGTTCTAGTGAAA+AGG - chr8.2:8265194-8265213 MS.gene030247:intron 30.0%
CTAAGAGTAGTTGTTTATGA+AGG - chr8.2:8266247-8266266 MS.gene030247:intron 30.0%
CTACATTTCATGCAATGTAT+TGG + chr8.2:8266520-8266539 None:intergenic 30.0%
CTTCATAAACAACTACTCTT+AGG + chr8.2:8266249-8266268 None:intergenic 30.0%
GAGAAATGAAATATTGCAGA+AGG + chr8.2:8266119-8266138 None:intergenic 30.0%
GATAGCAAGACTAATATTCT+GGG + chr8.2:8265675-8265694 None:intergenic 30.0%
TCAACCATGCAACAATAATT+TGG - chr8.2:8265695-8265714 MS.gene030247:intron 30.0%
TGCCAATAAATTCAAAATGC+AGG + chr8.2:8264953-8264972 None:intergenic 30.0%
TTGTTTACCTAAATAGGACA+GGG - chr8.2:8265918-8265937 MS.gene030247:intron 30.0%
! ATTGTGTGAATAAAGTACCT+TGG + chr8.2:8264894-8264913 None:intergenic 30.0%
! CACCTGCATTTTGAATTTAT+TGG - chr8.2:8264948-8264967 MS.gene030247:intron 30.0%
! TGTTAGAGTTGGTTAGTATT+TGG - chr8.2:8265255-8265274 MS.gene030247:intron 30.0%
!! AGTGATGATGATATGTTTTG+AGG + chr8.2:8264761-8264780 None:intergenic 30.0%
!! GTGATGATGATATGTTTTGA+GGG + chr8.2:8264760-8264779 None:intergenic 30.0%
!! TGGTATATATGTTGGTTTAG+AGG - chr8.2:8265832-8265851 MS.gene030247:intron 30.0%
!! TTAGAGCTCGTTTTTAAACA+GGG - chr8.2:8265955-8265974 MS.gene030247:intron 30.0%
!! TTTAGAGCTCGTTTTTAAAC+AGG - chr8.2:8265954-8265973 MS.gene030247:intron 30.0%
!! TTTTGAGGGTGAATAAATGT+GGG + chr8.2:8264746-8264765 None:intergenic 30.0%
!!! TTTTTTTCTCCTTACCTGTT+TGG + chr8.2:8265115-8265134 None:intergenic 30.0%
AAATGGAAGCTTGTACTTCT+TGG + chr8.2:8266550-8266569 None:intergenic 35.0%
ATTCCAATATGGTAAAGGCA+TGG - chr8.2:8266285-8266304 MS.gene030247:intron 35.0%
ATTCCATGCCTTTACCATAT+TGG + chr8.2:8266291-8266310 None:intergenic 35.0%
ATTTACCTTGTTGAGTGATG+AGG - chr8.2:8266566-8266585 MS.gene030247:CDS 35.0%
ATTTCTTTGGATCATTGCCT+GGG - chr8.2:8266625-8266644 MS.gene030247:CDS 35.0%
ATTTGAGAACTCTTCTCATG+TGG + chr8.2:8266179-8266198 None:intergenic 35.0%
CAACTACTCTTAGGAATTAG+AGG + chr8.2:8266240-8266259 None:intergenic 35.0%
CACTCTTTCATCTCTTTACA+AGG + chr8.2:8265531-8265550 None:intergenic 35.0%
GAAAAGGCTTCAAGCATTAT+CGG + chr8.2:8265995-8266014 None:intergenic 35.0%
GAATTTATTGGCAAATGAGC+AGG - chr8.2:8264960-8264979 MS.gene030247:intron 35.0%
GCATTACTGCTAAGATATTG+TGG + chr8.2:8265745-8265764 None:intergenic 35.0%
GTTCCCAAATTATTGTTGCA+TGG + chr8.2:8265702-8265721 None:intergenic 35.0%
TAACAAGGTAAGGAAAGAGT+GGG - chr8.2:8266590-8266609 MS.gene030247:CDS 35.0%
TATGAGAAGTTCAAGAAAGC+AGG - chr8.2:8266401-8266420 MS.gene030247:CDS 35.0%
TCATCACTCAACAAGGTAAA+TGG + chr8.2:8266567-8266586 None:intergenic 35.0%
TGTACAAGACTTTCAAGGAA+AGG + chr8.2:8265610-8265629 None:intergenic 35.0%
TTTACCTTGTTGAGTGATGA+GGG - chr8.2:8266567-8266586 MS.gene030247:CDS 35.0%
TTTGAGGGTGAATAAATGTG+GGG + chr8.2:8264745-8264764 None:intergenic 35.0%
! AAACCTCTTTTGAACGAAGA+AGG + chr8.2:8264863-8264882 None:intergenic 35.0%
! ATAATGCTTGAAGCCTTTTC+AGG - chr8.2:8265995-8266014 MS.gene030247:intron 35.0%
! GAGTTGGTTAGTATTTGGAA+TGG - chr8.2:8265260-8265279 MS.gene030247:intron 35.0%
! TGGTTAGTATTTGGAATGGA+TGG - chr8.2:8265264-8265283 MS.gene030247:intron 35.0%
!! AAGAGGTTTCATTTTTGCCA+AGG - chr8.2:8264874-8264893 MS.gene030247:CDS 35.0%
!!! AGAAGAAGTGGTTTTGGAAA+TGG + chr8.2:8264837-8264856 None:intergenic 35.0%
!!! CCTGTTTTTACAGCTTTGTA+GGG - chr8.2:8266026-8266045 MS.gene030247:intron 35.0%
!!! GGTTTTGGAAATGGAAGAAT+GGG + chr8.2:8264828-8264847 None:intergenic 35.0%
!!! GTTTTGAGGGTGAATAAATG+TGG + chr8.2:8264747-8264766 None:intergenic 35.0%
!!! TGGTTTTGGAAATGGAAGAA+TGG + chr8.2:8264829-8264848 None:intergenic 35.0%
AACAAGGTAAGGAAAGAGTG+GGG - chr8.2:8266591-8266610 MS.gene030247:CDS 40.0%
AACTTGATGTGCAGTTACTG+TGG - chr8.2:8265719-8265738 MS.gene030247:intron 40.0%
AATGATCCAAAGAAATCGCC+AGG + chr8.2:8266621-8266640 None:intergenic 40.0%
AATGTGGGGAAAGAATTGGT+AGG + chr8.2:8264731-8264750 None:intergenic 40.0%
ACACCTTCTTCGTTCAAAAG+AGG - chr8.2:8264857-8264876 MS.gene030247:CDS 40.0%
ACATGATCCCTGTCCTATTT+AGG + chr8.2:8265928-8265947 None:intergenic 40.0%
ATGTGGGGAAAGAATTGGTA+GGG + chr8.2:8264730-8264749 None:intergenic 40.0%
CCCTACAAAGCTGTAAAAAC+AGG + chr8.2:8266029-8266048 None:intergenic 40.0%
GATTTCTTTGGATCATTGCC+TGG - chr8.2:8266624-8266643 MS.gene030247:CDS 40.0%
GGGTAGAAATAAACAACCAC+AGG + chr8.2:8265069-8265088 None:intergenic 40.0%
GTAACAAGGTAAGGAAAGAG+TGG - chr8.2:8266589-8266608 MS.gene030247:CDS 40.0%
GTTAGGTCTCGTCAATTTGT+TGG - chr8.2:8265428-8265447 MS.gene030247:intron 40.0%
TACTTCCCTTGTGTTAGTTC+TGG - chr8.2:8265382-8265401 MS.gene030247:intron 40.0%
TCCTCTCACAAGGTAAAACT+TGG - chr8.2:8266458-8266477 MS.gene030247:CDS 40.0%
TGAGTCTCTCCAAGTACAAA+GGG - chr8.2:8265040-8265059 MS.gene030247:CDS 40.0%
TGGAAGAATGGGATAACTTG+AGG + chr8.2:8264817-8264836 None:intergenic 40.0%
TGTTCTAGTGAAAAGGGAAG+AGG - chr8.2:8265201-8265220 MS.gene030247:intron 40.0%
! AGGTGTAGAAGAAGTGGTTT+TGG + chr8.2:8264843-8264862 None:intergenic 40.0%
! ATATGAATCCCTAAAAGCGC+AGG + chr8.2:8266384-8266403 None:intergenic 40.0%
! GTCTCATCGATATGCTTTTC+AGG + chr8.2:8266714-8266733 None:intergenic 40.0%
! TCCAAGTTTTACCTTGTGAG+AGG + chr8.2:8266462-8266481 None:intergenic 40.0%
! TGGGTAATGGCTGTTTGTTA+GGG + chr8.2:8265656-8265675 None:intergenic 40.0%
!! AAGGCTTTGGAGTAGTTTCA+AGG + chr8.2:8266736-8266755 None:intergenic 40.0%
!!! CATCGATATGCTTTTCAGGT+TGG + chr8.2:8266710-8266729 None:intergenic 40.0%
!!! GCCTGTTTTTACAGCTTTGT+AGG - chr8.2:8266025-8266044 MS.gene030247:intron 40.0%
!!! TTAGTTCTGGCAGACCTTTT+GGG - chr8.2:8265395-8265414 MS.gene030247:intron 40.0%
AATTGGTAGGGAGAGTGATC+AGG + chr8.2:8264718-8264737 None:intergenic 45.0%
AGAACATAAGTCTCTCTCCC+AGG + chr8.2:8266645-8266664 None:intergenic 45.0%
AGACGATTCTTCCTCTCACA+AGG - chr8.2:8266448-8266467 MS.gene030247:CDS 45.0%
AGCTGTAAAAACAGGCTACC+CGG + chr8.2:8266021-8266040 None:intergenic 45.0%
AGGCTTCAAGCATTATCGGA+CGG + chr8.2:8265991-8266010 None:intergenic 45.0%
ATTGGTAGGGAGAGTGATCA+GGG + chr8.2:8264717-8264736 None:intergenic 45.0%
CAAGTACAAAGGGAAACCTG+TGG - chr8.2:8265050-8265069 MS.gene030247:CDS 45.0%
CACAGGTTTCCCTTTGTACT+TGG + chr8.2:8265052-8265071 None:intergenic 45.0%
GAGTAAAGGTTCAAAGCCAC+CGG - chr8.2:8264984-8265003 MS.gene030247:intron 45.0%
GCAAATGAGCAGGTGAGTAA+AGG - chr8.2:8264970-8264989 MS.gene030247:intron 45.0%
GTCTGCCAGAACTAACACAA+GGG + chr8.2:8265390-8265409 None:intergenic 45.0%
GTGAAAAGGGAAGAGGTGAA+TGG - chr8.2:8265208-8265227 MS.gene030247:intron 45.0%
GTGAGTCTCTCCAAGTACAA+AGG - chr8.2:8265039-8265058 MS.gene030247:CDS 45.0%
GTGATGAGGGTAACAAGGTA+AGG - chr8.2:8266580-8266599 MS.gene030247:CDS 45.0%
GTTACCCTCATCACTCAACA+AGG + chr8.2:8266574-8266593 None:intergenic 45.0%
GTTGAGTGATGAGGGTAACA+AGG - chr8.2:8266575-8266594 MS.gene030247:CDS 45.0%
TGGTCTTTCAACGTGAAAGC+CGG + chr8.2:8265006-8265025 None:intergenic 45.0%
TTACCTGTTTGGTACAGCCA+GGG + chr8.2:8265104-8265123 None:intergenic 45.0%
TTCACGTTGAAAGACCAGGA+TGG - chr8.2:8265009-8265028 MS.gene030247:CDS 45.0%
! CGAAGAAGGTGTAGAAGAAG+TGG + chr8.2:8264849-8264868 None:intergenic 45.0%
! CTGGGTAATGGCTGTTTGTT+AGG + chr8.2:8265657-8265676 None:intergenic 45.0%
! TAGAGGCACAAGAGTCAATG+TGG - chr8.2:8265849-8265868 MS.gene030247:intron 45.0%
!!! GTTAGTTCTGGCAGACCTTT+TGG - chr8.2:8265394-8265413 MS.gene030247:intron 45.0%
AAAGCAGGAGCAGAGGTTGT+TGG - chr8.2:8266416-8266435 MS.gene030247:CDS 50.0%
AAGCAGGAGCAGAGGTTGTT+GGG - chr8.2:8266417-8266436 MS.gene030247:CDS 50.0%
CTGGCTGTACCAAACAGGTA+AGG - chr8.2:8265103-8265122 MS.gene030247:intron 50.0%
CTTACCTGTTTGGTACAGCC+AGG + chr8.2:8265105-8265124 None:intergenic 50.0%
GATCTTCTACATCCTCACCG+AGG + chr8.2:8266056-8266075 None:intergenic 50.0%
GCAGAGGTTGTTGGGATAAG+TGG - chr8.2:8266425-8266444 MS.gene030247:CDS 50.0%
GCTTCAAGCATTATCGGACG+GGG + chr8.2:8265989-8266008 None:intergenic 50.0%
GGCTTCAAGCATTATCGGAC+GGG + chr8.2:8265990-8266009 None:intergenic 50.0%
GGCTTTCACGTTGAAAGACC+AGG - chr8.2:8265005-8265024 MS.gene030247:CDS 50.0%
GGTCTGCCAGAACTAACACA+AGG + chr8.2:8265391-8265410 None:intergenic 50.0%
GTTCAAGAAAGCAGGAGCAG+AGG - chr8.2:8266409-8266428 MS.gene030247:CDS 50.0%
TACCTGTTTGGTACAGCCAG+GGG + chr8.2:8265103-8265122 None:intergenic 50.0%
TCTTTCAACGTGAAAGCCGG+TGG + chr8.2:8265003-8265022 None:intergenic 50.0%
! ATTGCAGGCCTGCGCTTTTA+GGG - chr8.2:8266373-8266392 MS.gene030247:CDS 50.0%
! CAGCTTTGTAGGGTCAACCT+CGG - chr8.2:8266036-8266055 MS.gene030247:intron 50.0%
! TATTGCAGGCCTGCGCTTTT+AGG - chr8.2:8266372-8266391 MS.gene030247:CDS 50.0%
!! TGCTTGAAGCCTTTTCAGGC+CGG - chr8.2:8265999-8266018 MS.gene030247:intron 50.0%
GACTCACTGTCTTGCCATCC+TGG + chr8.2:8265026-8265045 None:intergenic 55.0%
GGCACAAGAGTCAATGTGGC+CGG - chr8.2:8265853-8265872 MS.gene030247:intron 55.0%
TTGTAGGGTCAACCTCGGTG+AGG - chr8.2:8266041-8266060 MS.gene030247:intron 55.0%
! GGAGTGCCTGGCGATTTCTT+TGG - chr8.2:8266612-8266631 MS.gene030247:CDS 55.0%
!! GCTTGAAGCCTTTTCAGGCC+GGG - chr8.2:8266000-8266019 MS.gene030247:intron 55.0%
ACAGGCTACCCGGCCTGAAA+AGG + chr8.2:8266011-8266030 None:intergenic 60.0%
AGCCAGGGGTCTCATCAGCA+GGG + chr8.2:8265089-8265108 None:intergenic 60.0%
GACCCCTGGCTGTACCAAAC+AGG - chr8.2:8265098-8265117 MS.gene030247:intron 60.0%
TACCCTGCTGATGAGACCCC+TGG - chr8.2:8265084-8265103 MS.gene030247:intron 60.0%
!! AGGAAAGAGTGGGGAGTGCC+TGG - chr8.2:8266600-8266619 MS.gene030247:CDS 60.0%
CAGCCAGGGGTCTCATCAGC+AGG + chr8.2:8265090-8265109 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 8264701 8266758 8264701 ID=MS.gene030247
chr8.2 mRNA 8264701 8266758 8264701 ID=MS.gene030247.t1;Parent=MS.gene030247
chr8.2 exon 8266564 8266758 8266564 ID=MS.gene030247.t1.exon1;Parent=MS.gene030247.t1
chr8.2 CDS 8266564 8266758 8266564 ID=cds.MS.gene030247.t1;Parent=MS.gene030247.t1
chr8.2 exon 8266340 8266477 8266340 ID=MS.gene030247.t1.exon2;Parent=MS.gene030247.t1
chr8.2 CDS 8266340 8266477 8266340 ID=cds.MS.gene030247.t1;Parent=MS.gene030247.t1
chr8.2 exon 8264990 8265079 8264990 ID=MS.gene030247.t1.exon3;Parent=MS.gene030247.t1
chr8.2 CDS 8264990 8265079 8264990 ID=cds.MS.gene030247.t1;Parent=MS.gene030247.t1
chr8.2 exon 8264701 8264919 8264701 ID=MS.gene030247.t1.exon4;Parent=MS.gene030247.t1
chr8.2 CDS 8264701 8264919 8264701 ID=cds.MS.gene030247.t1;Parent=MS.gene030247.t1
Gene Sequence

>MS.gene030247

ATGGCTAAGGTTTCCCTGATCACTCTCCCTACCAATTCTTTCCCCACATTTATTCACCCTCAAAACATATCATCATCACTTACTTCTACTCCATTCAATTCTTTATTTTTTGGCCTCAAGTTATCCCATTCTTCCATTTCCAAAACCACTTCTTCTACACCTTCTTCGTTCAAAAGAGGTTTCATTTTTGCCAAGGTACTTTATTCACACAATATACTTTTTTTTCTCTGTCTTACATGTTACAATCCACCTGCATTTTGAATTTATTGGCAAATGAGCAGGTGAGTAAAGGTTCAAAGCCACCGGCTTTCACGTTGAAAGACCAGGATGGCAAGACAGTGAGTCTCTCCAAGTACAAAGGGAAACCTGTGGTTGTTTATTTCTACCCTGCTGATGAGACCCCTGGCTGTACCAAACAGGTAAGGAGAAAAAAACATGTATTCTAGTGTTATATATTCTAATGTCTAATGTTTATAATCCATAAATGGATATGCATTGTTTGTTCTAGTGAAAAGGGAAGAGGTGAATGGTGTACACTACATGTTATGTTAGATTGTTAGAGTTGGTTAGTATTTGGAATGGATGGATAGTTAGTTGCTTTATATATATAGAGCACACTGTAGCTTTCAATATTAGTTATTTAAGTGTCGTTAGTAATTCTGATGCGACTATAGTGTGTAGTACTTCCCTTGTGTTAGTTCTGGCAGACCTTTTGGGAAGTTAATTAGTTAGGTCTCGTCAATTTGTTGGTTAAGTTAGTCGGTGAATCAGTTATAACTAACTTCATAACTACTTTTTGTAATAGGATAGTATAGAAACTGATATATCCTTGTAAAGAGATGAAAGAGTGACATTTTCATTGAATCGTTGATCATGAGAGAAAGTTGCGTGCTCAAGTGAAATTTTCCTTTCCTTGAAAGTCTTGTACATATGTTGCGTTCAACTTTCAATACCCTAACAAACAGCCATTACCCAGAATATTAGTCTTGCTATCTCAACCATGCAACAATAATTTGGGAACTTGATGTGCAGTTACTGTGGCCACAATATCTTAGCAGTAATGCATAAAATTAAGTCAGTGCTATTAGGGAAAAGAAAAAACATTGAATACATGAATCAATAGATCATAGTTGGTATATATGTTGGTTTAGAGGCACAAGAGTCAATGTGGCCGGTGCAATGACAATGAATATTTTTGTTCGTGTTATAAAAAAAAATTGTTTACCTAAATAGGACAGGGATCATGTAGTATTTTTAGAGCTCGTTTTTAAACAGGGTGTTTTAGCCCCGTCCGATAATGCTTGAAGCCTTTTCAGGCCGGGTAGCCTGTTTTTACAGCTTTGTAGGGTCAACCTCGGTGAGGATGTAGAAGATCAATCTCTGAACTTCGATAAATCTTGTGTGTTAATTCTTTACCTTCTGCAATATTTCATTTCTCCACACATTTTAGAATTGCTTTATCTTGTCTGTTCAATCCACATGAGAAGAGTTCTCAAATTTTGTCCAATATTTATCTACTGATTATTAGCACGTTGTCCTCTAATTCCTAAGAGTAGTTGTTTATGAAGGATCATGATATAATTGATTCCAATATGGTAAAGGCATGGAATTAGATTATGCAGAGTAGAGCAAATACTTGATATAGTTAAGGAGACAATTTTATGAATTTATTATTGCAGGCCTGCGCTTTTAGGGATTCATATGAGAAGTTCAAGAAAGCAGGAGCAGAGGTTGTTGGGATAAGTGGAGACGATTCTTCCTCTCACAAGGTAAAACTTGGAATTTTCACTGCATAATTTTTGTGCCAATTAATTAACCAATACATTGCATGAAATGTAGGCATTTGCCAAGAAGTACAAGCTTCCATTTACCTTGTTGAGTGATGAGGGTAACAAGGTAAGGAAAGAGTGGGGAGTGCCTGGCGATTTCTTTGGATCATTGCCTGGGAGAGAGACTTATGTTCTTGACAAAAATGGTGTCGTTCAGCTTGTATACAACAATCAGTTCCAACCTGAAAAGCATATCGATGAGACCTTGAAACTACTCCAAAGCCTTTAA
Protein sequence

>MS.gene030247.t1

MAKVSLITLPTNSFPTFIHPQNISSSLTSTPFNSLFFGLKLSHSSISKTTSSTPSSFKRGFIFAKVSKGSKPPAFTLKDQDGKTVSLSKYKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDSSSHKAFAKKYKLPFTLLSDEGNKVRKEWGVPGDFFGSLPGRETYVLDKNGVVQLVYNNQFQPEKHIDETLKLLQSL