AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene033119

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033119.t1 MTR_5g014710 64.968 314 108 1 90 403 47 358 5.88e-146 419
MS.gene033119.t1 MTR_4g092690 65.079 315 108 1 89 403 44 356 1.51e-141 407
MS.gene033119.t1 MTR_8g463760 60.121 331 126 3 77 403 15 343 1.86e-139 402
MS.gene033119.t1 MTR_8g463760 63.547 203 71 1 77 276 15 217 3.66e-88 268
MS.gene033119.t1 MTR_2g021700 72.549 51 14 0 256 306 52 102 4.04e-16 75.5
MS.gene033119.t1 MTR_2g045010 72.549 51 14 0 256 306 52 102 4.04e-16 75.5
MS.gene033119.t1 MTR_4g033285 73.333 45 12 0 256 300 52 96 1.45e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene033119.t1 AT3G47520 77.309 379 76 4 20 398 23 391 0.0 573
MS.gene033119.t1 AT1G53240 64.537 313 109 1 91 403 31 341 2.71e-144 414
MS.gene033119.t1 AT2G22780 63.609 327 117 1 77 403 30 354 1.13e-143 413
MS.gene033119.t1 AT3G15020 63.259 313 113 1 91 403 31 341 1.47e-140 404
MS.gene033119.t1 AT5G09660 60.870 345 129 3 63 403 12 354 1.64e-135 392
MS.gene033119.t1 AT5G09660 64.762 315 109 1 89 403 21 333 3.87e-135 390
MS.gene033119.t1 AT5G09660 60.580 345 129 4 63 403 12 353 3.54e-133 386
MS.gene033119.t1 AT3G15020 64.338 272 97 0 91 362 31 302 9.82e-125 363
MS.gene033119.t1 AT5G09660 63.322 289 102 2 63 347 12 300 6.41e-117 345
MS.gene033119.t1 AT5G09660 68.605 258 81 0 90 347 22 279 2.05e-116 343
MS.gene033119.t1 AT3G53910 49.438 89 45 0 318 406 9 97 2.55e-26 102

Find 107 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTCAATCTAGTCCTTT+TGG 0.231181 8.2:+17293373 MS.gene033119:CDS
CAACACCCCTTCGAAAGTTT+TGG 0.243573 8.2:+17293723 MS.gene033119:CDS
GAAACACCAAAGAGCTTCTT+AGG 0.295270 8.2:-17293997 None:intergenic
GCAAGTTGCGGGTGAGGTTT+CGG 0.332641 8.2:-17293546 None:intergenic
GAGGAAGTGACCTCCCTGTT+TGG 0.346298 8.2:-17293357 None:intergenic
GTTAATTTCAACACCTTCTC+TGG 0.351785 8.2:+17293415 MS.gene033119:CDS
ACTATTGGAACCACCCAAAC+AGG 0.361628 8.2:+17293343 MS.gene033119:CDS
TCGATGCTGGCCTTAAGTTC+TGG 0.369041 8.2:-17294477 None:intergenic
AGGAAGTGACCTCCCTGTTT+GGG 0.375677 8.2:-17293356 None:intergenic
TCTCATCAAGATGTCGCCTT+TGG 0.378753 8.2:+17293636 MS.gene033119:CDS
CTTGGTGCTGCAGGAGGGAT+TGG 0.382446 8.2:+17293598 MS.gene033119:CDS
ATAATATGAATAAAAGCATT+GGG 0.384767 8.2:-17293907 None:intergenic
TGAGTATGAGCAGAAGGCTT+TGG 0.385556 8.2:+17294443 MS.gene033119:CDS
CGAGTCATGCCGGGCTTCCT+AGG 0.395727 8.2:-17293817 None:intergenic
TATGATATTGCGAATGTTAA+GGG 0.396701 8.2:+17293676 MS.gene033119:CDS
TTTAGAATTTCAGCGGCAAT+AGG 0.400849 8.2:-17293955 None:intergenic
CTATGATATTGCGAATGTTA+AGG 0.401378 8.2:+17293675 MS.gene033119:CDS
TCCTACAAAGTAGCGGTTCT+TGG 0.402994 8.2:+17293580 MS.gene033119:CDS
GTTGAGGCGAAGGCTGGTGC+AGG 0.406244 8.2:+17294222 MS.gene033119:CDS
TGCCTGAGGCTGCAAGTTGC+GGG 0.408008 8.2:-17293557 None:intergenic
TCGTCTCTTCGTGCACTTGA+CGG 0.411087 8.2:+17294291 MS.gene033119:CDS
CAGTTGTTGGAGGTCATGCC+GGG 0.417388 8.2:+17294094 MS.gene033119:CDS
ACCAAGAACCGCTACTTTGT+AGG 0.417991 8.2:-17293581 None:intergenic
CACCCGCAACTTGCAGCCTC+AGG 0.423294 8.2:+17293555 MS.gene033119:CDS
CCGGCATGACCTCCAACAAC+TGG 0.427912 8.2:-17294093 None:intergenic
ACATCAATGCTGGTATAGTC+AGG 0.428901 8.2:+17293854 MS.gene033119:CDS
TTATCCCTGCTGGTGTTCCT+AGG 0.429918 8.2:+17293800 MS.gene033119:CDS
GGCTTCCTAGGAACACCAGC+AGG 0.432243 8.2:-17293805 None:intergenic
AGCACTTAAGCCAGAACTTA+AGG 0.432437 8.2:+17294467 MS.gene033119:CDS
TGAGAGATGGCATGGCTTTG+AGG 0.432465 8.2:-17293438 None:intergenic
TATGATCCTAAGAAGCTCTT+TGG 0.434339 8.2:+17293991 MS.gene033119:CDS
AGGGTCTGCTACTTTGTCAA+TGG 0.435055 8.2:+17294242 MS.gene033119:CDS
GAGGCTGCAAGTTGCGGGTG+AGG 0.436560 8.2:-17293552 None:intergenic
GATGTGGATGTTCCAGTTGT+TGG 0.440014 8.2:+17294081 MS.gene033119:CDS
GTAGCGGTTCTTGGTGCTGC+AGG 0.442098 8.2:+17293589 MS.gene033119:CDS
CTCAATCCTTGGAGATCAGT+TGG 0.450054 8.2:-17294420 None:intergenic
GATAATATGAATAAAAGCAT+TGG 0.454366 8.2:-17293908 None:intergenic
CCAGTTGTTGGAGGTCATGC+CGG 0.456311 8.2:+17294093 MS.gene033119:CDS
GACTCTGAATCATCTTTCTC+TGG 0.457426 8.2:+17293466 MS.gene033119:CDS
TTTCACTGATGAAGAAATTG+AGG 0.470058 8.2:+17294161 MS.gene033119:CDS
ATGCCTGAGGCTGCAAGTTG+CGG 0.479068 8.2:-17293558 None:intergenic
GCTCATACTCACTCAATCCT+TGG 0.489832 8.2:-17294431 None:intergenic
GATGTTGTTGTTATCCCTGC+TGG 0.490735 8.2:+17293790 MS.gene033119:CDS
GAATTGAATTTCAAACCAAA+AGG 0.499197 8.2:-17293388 None:intergenic
TGGTTTGAAATTCAATTCCC+AGG 0.499844 8.2:+17293393 MS.gene033119:CDS
CTTCAAGGGTGAAGATTGGT+AGG 0.501008 8.2:+17294376 MS.gene033119:CDS
TACCAGCATTGATGTTGAAA+AGG 0.504347 8.2:-17293846 None:intergenic
TTTGCTTCAAGGGTGAAGAT+TGG 0.507205 8.2:+17294372 MS.gene033119:CDS
GAGTTAGCAAATTGTTTGAA+AGG 0.510601 8.2:+17293763 MS.gene033119:CDS
AAGGTCGTCACGAGTCATGC+CGG 0.512854 8.2:-17293827 None:intergenic
AAACCAAAAGGACTAGATTG+AGG 0.513013 8.2:-17293376 None:intergenic
TCGCAATATCATAGAGATGC+AGG 0.515907 8.2:-17293666 None:intergenic
AGCAAATTGTTTGAAAGGTG+TGG 0.519677 8.2:+17293768 MS.gene033119:CDS
ATAGGAACTGTAGAGTTCAC+TGG 0.520893 8.2:-17293937 None:intergenic
CGCTGAAATTCTAAAACAGA+AGG 0.523131 8.2:+17293963 MS.gene033119:CDS
AGGAGGGATTGGTCAGCCAC+TGG 0.524866 8.2:+17293609 MS.gene033119:CDS
TGCTGGTATAGTCAGGGACT+TGG 0.529987 8.2:+17293861 MS.gene033119:CDS
GTGGATGTTCCAGTTGTTGG+AGG 0.532818 8.2:+17294084 MS.gene033119:CDS
GCGGTTCTTGGTGCTGCAGG+AGG 0.533048 8.2:+17293592 MS.gene033119:CDS
GTGAAATCCAAAACTTTCGA+AGG 0.537192 8.2:-17293730 None:intergenic
ACTGTCAGGATTCAAAATGC+TGG 0.538512 8.2:+17294189 MS.gene033119:CDS
AGGTCGTCACGAGTCATGCC+GGG 0.542713 8.2:-17293826 None:intergenic
AGGGTGAAGATTGGTAGGAA+AGG 0.542764 8.2:+17294381 MS.gene033119:CDS
AAGTGACCTCCCTGTTTGGG+TGG 0.544528 8.2:-17293353 None:intergenic
GAGAGGAAGAATTGTAATCC+CGG 0.547677 8.2:-17294112 None:intergenic
AGAAGGTGTTGAAATTAACC+TGG 0.550640 8.2:-17293411 None:intergenic
TTTCTACACTTGATGTTGTG+AGG 0.552915 8.2:+17294016 MS.gene033119:CDS
GAGGTTGTTGAGGCGAAGGC+TGG 0.553690 8.2:+17294216 MS.gene033119:CDS
ATTGAGTGAGTATGAGCAGA+AGG 0.555968 8.2:+17294437 MS.gene033119:CDS
AACTGAGGTTGTTGAGGCGA+AGG 0.556107 8.2:+17294212 MS.gene033119:CDS
TTAATTCCAACTGATCTCCA+AGG 0.558509 8.2:+17294414 MS.gene033119:CDS
GCTGGTGTTCCTAGGAAGCC+CGG 0.561452 8.2:+17293808 MS.gene033119:CDS
CTTAAGGCCAGCATCGAGAA+GGG 0.563554 8.2:+17294483 MS.gene033119:CDS
TCATCAGTGAAACTCACTGA+GGG 0.567339 8.2:-17294150 None:intergenic
AAATTGAGGAGCTAACTGTC+AGG 0.577890 8.2:+17294175 MS.gene033119:CDS
GTCACATCTGAGAGATGGCA+TGG 0.579241 8.2:-17293446 None:intergenic
ACTTAAGGCCAGCATCGAGA+AGG 0.580005 8.2:+17294482 MS.gene033119:CDS
GATTCAAAATGCTGGAACTG+AGG 0.580164 8.2:+17294197 MS.gene033119:CDS
CGGTTCTTGGTGCTGCAGGA+GGG 0.586824 8.2:+17293593 MS.gene033119:CDS
GAACCTGAGGTTGATTGATG+TGG 0.587092 8.2:+17294065 MS.gene033119:CDS
TTCTACACTTGATGTTGTGA+GGG 0.588106 8.2:+17294017 MS.gene033119:CDS
CATCCACATCAATCAACCTC+AGG 0.589306 8.2:-17294068 None:intergenic
TGAAATCCAAAACTTTCGAA+GGG 0.589668 8.2:-17293729 None:intergenic
CATGGCTTTGAGGCCAGAGA+AGG 0.592005 8.2:-17293428 None:intergenic
TCAGAGTCACATCTGAGAGA+TGG 0.601214 8.2:-17293451 None:intergenic
TTGAGGCGAAGGCTGGTGCA+GGG 0.614890 8.2:+17294223 MS.gene033119:CDS
TGCTGGAACTGAGGTTGTTG+AGG 0.616411 8.2:+17294206 MS.gene033119:CDS
ATTGGGGCAATTATCTGCAA+CGG 0.623966 8.2:-17293890 None:intergenic
TTGCTCAGAAGAAGAACCTG+AGG 0.625392 8.2:+17294052 MS.gene033119:CDS
CATCAATGCTGGTATAGTCA+GGG 0.635474 8.2:+17293855 MS.gene033119:CDS
CTATTGGAACCACCCAAACA+GGG 0.635885 8.2:+17293344 MS.gene033119:CDS
AGATGCAGGTCGGAAACCAA+AGG 0.636274 8.2:-17293652 None:intergenic
TGCAAAAGTTGCACGCAGAG+CGG 0.636866 8.2:-17293503 None:intergenic
GAAGGTGTTGAAATTAACCT+GGG 0.642084 8.2:-17293410 None:intergenic
GCTGAAATTCTAAAACAGAA+GGG 0.647110 8.2:+17293964 MS.gene033119:CDS
TTAAGGCCAGCATCGAGAAG+GGG 0.649629 8.2:+17294484 MS.gene033119:CDS
TAAGGCCAGCATCGAGAAGG+GGG 0.655068 8.2:+17294485 MS.gene033119:CDS
TAATATGAATAAAAGCATTG+GGG 0.668981 8.2:-17293906 None:intergenic
GATTGGTAGGAAAGGAGTCG+AGG 0.670539 8.2:+17294389 MS.gene033119:CDS
GCTTCCTAGGAACACCAGCA+GGG 0.676922 8.2:-17293804 None:intergenic
TTCATCAGTGAAACTCACTG+AGG 0.681230 8.2:-17294151 None:intergenic
TCAGGCATCCTACAAAGTAG+CGG 0.690931 8.2:+17293573 MS.gene033119:CDS
GAAATCCAAAACTTTCGAAG+GGG 0.694170 8.2:-17293728 None:intergenic
AATATCATAGAGATGCAGGT+CGG 0.697174 8.2:-17293662 None:intergenic
GCTACTTTGTAGGATGCCTG+AGG 0.706674 8.2:-17293571 None:intergenic
ATCTTGATGAGAAGTGCCAG+TGG 0.724135 8.2:-17293625 None:intergenic
TTGGAACCACCCAAACAGGG+AGG 0.754881 8.2:+17293347 MS.gene033119:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATGAATAAAAGCATT+GGG - chr8.2:17293910-17293929 None:intergenic 15.0%
!!! GATAATATGAATAAAAGCAT+TGG - chr8.2:17293911-17293930 None:intergenic 20.0%
!!! TAATATGAATAAAAGCATTG+GGG - chr8.2:17293909-17293928 None:intergenic 20.0%
! GAATTGAATTTCAAACCAAA+AGG - chr8.2:17293391-17293410 None:intergenic 25.0%
! TATGATATTGCGAATGTTAA+GGG + chr8.2:17293676-17293695 MS.gene033119:CDS 25.0%
CTATGATATTGCGAATGTTA+AGG + chr8.2:17293675-17293694 MS.gene033119:CDS 30.0%
GAGTTAGCAAATTGTTTGAA+AGG + chr8.2:17293763-17293782 MS.gene033119:CDS 30.0%
TGAAATCCAAAACTTTCGAA+GGG - chr8.2:17293732-17293751 None:intergenic 30.0%
TTTCACTGATGAAGAAATTG+AGG + chr8.2:17294161-17294180 MS.gene033119:CDS 30.0%
!! GCTGAAATTCTAAAACAGAA+GGG + chr8.2:17293964-17293983 MS.gene033119:CDS 30.0%
!!! CTTCTGTTTTAGAATTTCAG+CGG - chr8.2:17293965-17293984 None:intergenic 30.0%
AAACCAAAAGGACTAGATTG+AGG - chr8.2:17293379-17293398 None:intergenic 35.0%
AATATCATAGAGATGCAGGT+CGG - chr8.2:17293665-17293684 None:intergenic 35.0%
AGCAAATTGTTTGAAAGGTG+TGG + chr8.2:17293768-17293787 MS.gene033119:CDS 35.0%
GAAATCCAAAACTTTCGAAG+GGG - chr8.2:17293731-17293750 None:intergenic 35.0%
GTGAAATCCAAAACTTTCGA+AGG - chr8.2:17293733-17293752 None:intergenic 35.0%
GTTAATTTCAACACCTTCTC+TGG + chr8.2:17293415-17293434 MS.gene033119:CDS 35.0%
TATGATCCTAAGAAGCTCTT+TGG + chr8.2:17293991-17294010 MS.gene033119:CDS 35.0%
TTAATTCCAACTGATCTCCA+AGG + chr8.2:17294414-17294433 MS.gene033119:CDS 35.0%
TTCACCCTTGAAGCAAAAAA+CGG - chr8.2:17294369-17294388 None:intergenic 35.0%
TTCTACACTTGATGTTGTGA+GGG + chr8.2:17294017-17294036 MS.gene033119:CDS 35.0%
TTTCTACACTTGATGTTGTG+AGG + chr8.2:17294016-17294035 MS.gene033119:CDS 35.0%
! TGGTTTGAAATTCAATTCCC+AGG + chr8.2:17293393-17293412 MS.gene033119:CDS 35.0%
! TTTAGAATTTCAGCGGCAAT+AGG - chr8.2:17293958-17293977 None:intergenic 35.0%
!! AGAAGGTGTTGAAATTAACC+TGG - chr8.2:17293414-17293433 None:intergenic 35.0%
!! CGCTGAAATTCTAAAACAGA+AGG + chr8.2:17293963-17293982 MS.gene033119:CDS 35.0%
!! GAAGGTGTTGAAATTAACCT+GGG - chr8.2:17293413-17293432 None:intergenic 35.0%
!! TACCAGCATTGATGTTGAAA+AGG - chr8.2:17293849-17293868 None:intergenic 35.0%
!!! GCATCAGCTACTTTTACTAT+TGG + chr8.2:17293328-17293347 MS.gene033119:CDS 35.0%
!!! TCGAAAGTTTTGGATTTCAC+AGG + chr8.2:17293733-17293752 MS.gene033119:CDS 35.0%
AAATTGAGGAGCTAACTGTC+AGG + chr8.2:17294175-17294194 MS.gene033119:CDS 40.0%
ACATCAATGCTGGTATAGTC+AGG + chr8.2:17293854-17293873 MS.gene033119:CDS 40.0%
ACTGTCAGGATTCAAAATGC+TGG + chr8.2:17294189-17294208 MS.gene033119:CDS 40.0%
AGCACTTAAGCCAGAACTTA+AGG + chr8.2:17294467-17294486 MS.gene033119:CDS 40.0%
ATAGGAACTGTAGAGTTCAC+TGG - chr8.2:17293940-17293959 None:intergenic 40.0%
ATTGAGTGAGTATGAGCAGA+AGG + chr8.2:17294437-17294456 MS.gene033119:CDS 40.0%
ATTGGGGCAATTATCTGCAA+CGG - chr8.2:17293893-17293912 None:intergenic 40.0%
CATCAATGCTGGTATAGTCA+GGG + chr8.2:17293855-17293874 MS.gene033119:CDS 40.0%
GAAACACCAAAGAGCTTCTT+AGG - chr8.2:17294000-17294019 None:intergenic 40.0%
GACTCTGAATCATCTTTCTC+TGG + chr8.2:17293466-17293485 MS.gene033119:CDS 40.0%
GAGAGGAAGAATTGTAATCC+CGG - chr8.2:17294115-17294134 None:intergenic 40.0%
GATTCAAAATGCTGGAACTG+AGG + chr8.2:17294197-17294216 MS.gene033119:CDS 40.0%
TCATCAGTGAAACTCACTGA+GGG - chr8.2:17294153-17294172 None:intergenic 40.0%
TCGCAATATCATAGAGATGC+AGG - chr8.2:17293669-17293688 None:intergenic 40.0%
TGAAGCAAAAAACGGAAGGT+CGG - chr8.2:17294361-17294380 None:intergenic 40.0%
TTCATCAGTGAAACTCACTG+AGG - chr8.2:17294154-17294173 None:intergenic 40.0%
TTTGCTTCAAGGGTGAAGAT+TGG + chr8.2:17294372-17294391 MS.gene033119:CDS 40.0%
! CGGTTTTCCTTTTGAGCTTT+GGG - chr8.2:17293529-17293548 None:intergenic 40.0%
! CTTCCTCAATCTAGTCCTTT+TGG + chr8.2:17293373-17293392 MS.gene033119:CDS 40.0%
! GACCTTTTCAACATCAATGC+TGG + chr8.2:17293844-17293863 MS.gene033119:CDS 40.0%
! TCGGTTTTCCTTTTGAGCTT+TGG - chr8.2:17293530-17293549 None:intergenic 40.0%
! TTTTGCACCCAAAGCTCAAA+AGG + chr8.2:17293519-17293538 MS.gene033119:CDS 40.0%
!! GGTTTTGTCTTTGACAAGAG+AGG - chr8.2:17294132-17294151 None:intergenic 40.0%
!!! ACCTTCCGTTTTTTGCTTCA+AGG + chr8.2:17294361-17294380 MS.gene033119:CDS 40.0%
!!! CCTTCCGTTTTTTGCTTCAA+GGG + chr8.2:17294362-17294381 MS.gene033119:CDS 40.0%
ACTATTGGAACCACCCAAAC+AGG + chr8.2:17293343-17293362 MS.gene033119:CDS 45.0%
AGGGTGAAGATTGGTAGGAA+AGG + chr8.2:17294381-17294400 MS.gene033119:CDS 45.0%
CATCCACATCAATCAACCTC+AGG - chr8.2:17294071-17294090 None:intergenic 45.0%
CCCTTGAAGCAAAAAACGGA+AGG - chr8.2:17294365-17294384 None:intergenic 45.0%
CTATTGGAACCACCCAAACA+GGG + chr8.2:17293344-17293363 MS.gene033119:CDS 45.0%
CTCAATCCTTGGAGATCAGT+TGG - chr8.2:17294423-17294442 None:intergenic 45.0%
CTTCAAGGGTGAAGATTGGT+AGG + chr8.2:17294376-17294395 MS.gene033119:CDS 45.0%
GATGTGGATGTTCCAGTTGT+TGG + chr8.2:17294081-17294100 MS.gene033119:CDS 45.0%
GCTCATACTCACTCAATCCT+TGG - chr8.2:17294434-17294453 None:intergenic 45.0%
TCAGAGTCACATCTGAGAGA+TGG - chr8.2:17293454-17293473 None:intergenic 45.0%
TCAGGCATCCTACAAAGTAG+CGG + chr8.2:17293573-17293592 MS.gene033119:CDS 45.0%
TCCTACAAAGTAGCGGTTCT+TGG + chr8.2:17293580-17293599 MS.gene033119:CDS 45.0%
TCTCATCAAGATGTCGCCTT+TGG + chr8.2:17293636-17293655 MS.gene033119:CDS 45.0%
TGAGTATGAGCAGAAGGCTT+TGG + chr8.2:17294443-17294462 MS.gene033119:CDS 45.0%
TTGCTCAGAAGAAGAACCTG+AGG + chr8.2:17294052-17294071 MS.gene033119:CDS 45.0%
! ACCAAGAACCGCTACTTTGT+AGG - chr8.2:17293584-17293603 None:intergenic 45.0%
! CAACACCCCTTCGAAAGTTT+TGG + chr8.2:17293723-17293742 MS.gene033119:CDS 45.0%
! GAACCTGAGGTTGATTGATG+TGG + chr8.2:17294065-17294084 MS.gene033119:CDS 45.0%
! GATGTTGTTGTTATCCCTGC+TGG + chr8.2:17293790-17293809 MS.gene033119:CDS 45.0%
!! AGGGTCTGCTACTTTGTCAA+TGG + chr8.2:17294242-17294261 MS.gene033119:CDS 45.0%
!! ATCTTGATGAGAAGTGCCAG+TGG - chr8.2:17293628-17293647 None:intergenic 45.0%
AACTGAGGTTGTTGAGGCGA+AGG + chr8.2:17294212-17294231 MS.gene033119:CDS 50.0%
AGATGCAGGTCGGAAACCAA+AGG - chr8.2:17293655-17293674 None:intergenic 50.0%
AGGAAGTGACCTCCCTGTTT+GGG - chr8.2:17293359-17293378 None:intergenic 50.0%
GATTGGTAGGAAAGGAGTCG+AGG + chr8.2:17294389-17294408 MS.gene033119:CDS 50.0%
GTCACATCTGAGAGATGGCA+TGG - chr8.2:17293449-17293468 None:intergenic 50.0%
GTGGATGTTCCAGTTGTTGG+AGG + chr8.2:17294084-17294103 MS.gene033119:CDS 50.0%
TCGTCTCTTCGTGCACTTGA+CGG + chr8.2:17294291-17294310 MS.gene033119:CDS 50.0%
TGCAAAAGTTGCACGCAGAG+CGG - chr8.2:17293506-17293525 None:intergenic 50.0%
TGCTGGAACTGAGGTTGTTG+AGG + chr8.2:17294206-17294225 MS.gene033119:CDS 50.0%
TGCTGGTATAGTCAGGGACT+TGG + chr8.2:17293861-17293880 MS.gene033119:CDS 50.0%
TTATCCCTGCTGGTGTTCCT+AGG + chr8.2:17293800-17293819 MS.gene033119:CDS 50.0%
! ACTTAAGGCCAGCATCGAGA+AGG + chr8.2:17294482-17294501 MS.gene033119:CDS 50.0%
! CTTAAGGCCAGCATCGAGAA+GGG + chr8.2:17294483-17294502 MS.gene033119:CDS 50.0%
! GCTACTTTGTAGGATGCCTG+AGG - chr8.2:17293574-17293593 None:intergenic 50.0%
! TGAGAGATGGCATGGCTTTG+AGG - chr8.2:17293441-17293460 None:intergenic 50.0%
! TTAAGGCCAGCATCGAGAAG+GGG + chr8.2:17294484-17294503 MS.gene033119:CDS 50.0%
!! TCGATGCTGGCCTTAAGTTC+TGG - chr8.2:17294480-17294499 None:intergenic 50.0%
AAGGTCGTCACGAGTCATGC+CGG - chr8.2:17293830-17293849 None:intergenic 55.0%
AAGTGACCTCCCTGTTTGGG+TGG - chr8.2:17293356-17293375 None:intergenic 55.0%
ATGCCTGAGGCTGCAAGTTG+CGG - chr8.2:17293561-17293580 None:intergenic 55.0%
CAGTTGTTGGAGGTCATGCC+GGG + chr8.2:17294094-17294113 MS.gene033119:CDS 55.0%
CCAGTTGTTGGAGGTCATGC+CGG + chr8.2:17294093-17294112 MS.gene033119:CDS 55.0%
GAGGAAGTGACCTCCCTGTT+TGG - chr8.2:17293360-17293379 None:intergenic 55.0%
GCAAGTTGCGGGTGAGGTTT+CGG - chr8.2:17293549-17293568 None:intergenic 55.0%
GCTTCCTAGGAACACCAGCA+GGG - chr8.2:17293807-17293826 None:intergenic 55.0%
TTGGAACCACCCAAACAGGG+AGG + chr8.2:17293347-17293366 MS.gene033119:CDS 55.0%
! TAAGGCCAGCATCGAGAAGG+GGG + chr8.2:17294485-17294504 MS.gene033119:CDS 55.0%
!! CATGGCTTTGAGGCCAGAGA+AGG - chr8.2:17293431-17293450 None:intergenic 55.0%
AGCAACCCCCTTCTCGATGC+TGG - chr8.2:17294493-17294512 None:intergenic 60.0%
AGGTCGTCACGAGTCATGCC+GGG - chr8.2:17293829-17293848 None:intergenic 60.0%
CCGGCATGACCTCCAACAAC+TGG - chr8.2:17294096-17294115 None:intergenic 60.0%
GAGGTTGTTGAGGCGAAGGC+TGG + chr8.2:17294216-17294235 MS.gene033119:CDS 60.0%
GCTGGTGTTCCTAGGAAGCC+CGG + chr8.2:17293808-17293827 MS.gene033119:CDS 60.0%
GGCTTCCTAGGAACACCAGC+AGG - chr8.2:17293808-17293827 None:intergenic 60.0%
TGCCTGAGGCTGCAAGTTGC+GGG - chr8.2:17293560-17293579 None:intergenic 60.0%
TTGAGGCGAAGGCTGGTGCA+GGG + chr8.2:17294223-17294242 MS.gene033119:CDS 60.0%
!! AGGAGGGATTGGTCAGCCAC+TGG + chr8.2:17293609-17293628 MS.gene033119:CDS 60.0%
!! CGGTTCTTGGTGCTGCAGGA+GGG + chr8.2:17293593-17293612 MS.gene033119:CDS 60.0%
!! CTTGGTGCTGCAGGAGGGAT+TGG + chr8.2:17293598-17293617 MS.gene033119:CDS 60.0%
!! GTAGCGGTTCTTGGTGCTGC+AGG + chr8.2:17293589-17293608 MS.gene033119:CDS 60.0%
CACCCGCAACTTGCAGCCTC+AGG + chr8.2:17293555-17293574 MS.gene033119:CDS 65.0%
CGAGTCATGCCGGGCTTCCT+AGG - chr8.2:17293820-17293839 None:intergenic 65.0%
GAGGCTGCAAGTTGCGGGTG+AGG - chr8.2:17293555-17293574 None:intergenic 65.0%
GTTGAGGCGAAGGCTGGTGC+AGG + chr8.2:17294222-17294241 MS.gene033119:CDS 65.0%
!! GCGGTTCTTGGTGCTGCAGG+AGG + chr8.2:17293592-17293611 MS.gene033119:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 17293316 17294542 17293316 ID=MS.gene033119
chr8.2 mRNA 17293316 17294542 17293316 ID=MS.gene033119.t1;Parent=MS.gene033119
chr8.2 exon 17293316 17294542 17293316 ID=MS.gene033119.t1.exon1;Parent=MS.gene033119.t1
chr8.2 CDS 17293316 17294542 17293316 ID=cds.MS.gene033119.t1;Parent=MS.gene033119.t1
Gene Sequence

>MS.gene033119

ATGGCGGCAGCAGCATCAGCTACTTTTACTATTGGAACCACCCAAACAGGGAGGTCACTTCCTCAATCTAGTCCTTTTGGTTTGAAATTCAATTCCCAGGTTAATTTCAACACCTTCTCTGGCCTCAAAGCCATGCCATCTCTCAGATGTGACTCTGAATCATCTTTCTCTGGCAAAGAAACTTGTGCCGCTCTGCGTGCAACTTTTGCACCCAAAGCTCAAAAGGAAAACCGAAACCTCACCCGCAACTTGCAGCCTCAGGCATCCTACAAAGTAGCGGTTCTTGGTGCTGCAGGAGGGATTGGTCAGCCACTGGCACTTCTCATCAAGATGTCGCCTTTGGTTTCCGACCTGCATCTCTATGATATTGCGAATGTTAAGGGAGTTGCTGCTGATATCAGTCATTGCAACACCCCTTCGAAAGTTTTGGATTTCACAGGTGCTTCTGAGTTAGCAAATTGTTTGAAAGGTGTGGATGTTGTTGTTATCCCTGCTGGTGTTCCTAGGAAGCCCGGCATGACTCGTGACGACCTTTTCAACATCAATGCTGGTATAGTCAGGGACTTGGTCACTGCCGTTGCAGATAATTGCCCCAATGCTTTTATTCATATTATCAGTAATCCAGTGAACTCTACAGTTCCTATTGCCGCTGAAATTCTAAAACAGAAGGGTGTCTATGATCCTAAGAAGCTCTTTGGTGTTTCTACACTTGATGTTGTGAGGGCAAACACATTTGTTGCTCAGAAGAAGAACCTGAGGTTGATTGATGTGGATGTTCCAGTTGTTGGAGGTCATGCCGGGATTACAATTCTTCCTCTCTTGTCAAAGACAAAACCCTCAGTGAGTTTCACTGATGAAGAAATTGAGGAGCTAACTGTCAGGATTCAAAATGCTGGAACTGAGGTTGTTGAGGCGAAGGCTGGTGCAGGGTCTGCTACTTTGTCAATGGCTTATGCAGCAGCAAGATTTGTTGAATCGTCTCTTCGTGCACTTGACGGAGACGCTGATGTGTATGAGTGCTCATTCGTACAGTCAGATCTGACCGACCTTCCGTTTTTTGCTTCAAGGGTGAAGATTGGTAGGAAAGGAGTCGAGGCTTTAATTCCAACTGATCTCCAAGGATTGAGTGAGTATGAGCAGAAGGCTTTGGAAGCACTTAAGCCAGAACTTAAGGCCAGCATCGAGAAGGGGGTTGCTTTTGCTCAAAAGCAAACTGTTACTGCTTAG
Protein sequence

>MS.gene033119.t1

MAAAASATFTIGTTQTGRSLPQSSPFGLKFNSQVNFNTFSGLKAMPSLRCDSESSFSGKETCAALRATFAPKAQKENRNLTRNLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSKVLDFTGASELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVTAVADNCPNAFIHIISNPVNSTVPIAAEILKQKGVYDPKKLFGVSTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVSFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDADVYECSFVQSDLTDLPFFASRVKIGRKGVEALIPTDLQGLSEYEQKALEALKPELKASIEKGVAFAQKQTVTA