AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028531


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028531.t1 MTR_4g092690 98.876 356 4 0 1 356 1 356 0.0 713
MS.gene028531.t1 MTR_5g014710 80.168 358 69 1 1 356 1 358 0.0 592
MS.gene028531.t1 MTR_8g463760 64.744 312 109 1 43 353 29 340 8.13e-140 400
MS.gene028531.t1 MTR_8g463760 70.526 190 56 0 43 232 29 218 1.60e-88 267
MS.gene028531.t1 MTR_2g021700 93.333 60 4 0 202 261 43 102 3.17e-31 115
MS.gene028531.t1 MTR_2g045010 93.333 60 4 0 202 261 43 102 3.17e-31 115
MS.gene028531.t1 MTR_4g033285 96.296 54 2 0 202 255 43 96 2.21e-28 106
MS.gene028531.t1 MTR_4g121520 65.517 58 5 1 202 259 3 45 2.49e-13 71.2
MS.gene028531.t1 MTR_5g012390 24.125 257 162 10 46 283 39 281 1.68e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028531.t1 AT5G09660 85.955 356 48 1 1 356 1 354 0.0 602
MS.gene028531.t1 AT5G09660 85.674 356 48 2 1 356 1 353 0.0 596
MS.gene028531.t1 AT2G22780 80.627 351 66 1 8 356 4 354 0.0 578
MS.gene028531.t1 AT5G09660 87.651 332 41 0 25 356 2 333 0.0 578
MS.gene028531.t1 AT5G09660 85.762 302 41 1 1 302 1 300 0.0 507
MS.gene028531.t1 AT5G09660 87.770 278 34 0 25 302 2 279 2.89e-172 483
MS.gene028531.t1 AT1G53240 64.873 316 111 0 38 353 23 338 4.57e-146 416
MS.gene028531.t1 AT3G15020 65.595 311 107 0 43 353 28 338 2.01e-144 412
MS.gene028531.t1 AT3G47520 63.226 310 112 1 44 351 82 391 2.61e-136 394
MS.gene028531.t1 AT3G15020 67.153 274 90 0 43 316 28 301 3.89e-128 370

Find 103 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGAATTCTACTCCCTTC+TGG 0.272096 4.1:+20517065 None:intergenic
TCTTCACCCTTCAAATTTGC+AGG 0.278875 4.1:-20519485 MS.gene028531:intron
GAATCCAGGTGCCCCACCTT+TGG 0.330579 4.1:+20519021 None:intergenic
GGATTCAAAGTAGCAGTATT+GGG 0.336673 4.1:-20519004 MS.gene028531:CDS
CTGGTCATTCCAGGTTTCCT+TGG 0.341674 4.1:+20518381 None:intergenic
CTGACAAATCGCATTCAAAA+TGG 0.343591 4.1:-20517819 MS.gene028531:CDS
CTCTTGCAGGCAGAGGTACT+TGG 0.352335 4.1:-20518051 MS.gene028531:intron
CAGAGATTCTTGCAATCCTT+TGG 0.365549 4.1:+20519512 None:intergenic
AATGCGATTTGTCAGGTATT+CGG 0.372408 4.1:+20517827 None:intergenic
AAGTCGTCCCTGGTCATTCC+AGG 0.386910 4.1:+20518372 None:intergenic
ATCAAGTTGACAATCGCATT+GGG 0.397138 4.1:+20518291 None:intergenic
TCTTCTGCAGTGAAGCTACT+AGG 0.411408 4.1:+20517852 None:intergenic
TTCATACTACAGGCTAAAGC+TGG 0.423720 4.1:-20517619 MS.gene028531:intron
TTGAAGACCTCAGCAGCAAT+TGG 0.432472 4.1:+20518243 None:intergenic
GATTCTTGCAATCCTTTGGT+TGG 0.437303 4.1:+20519516 None:intergenic
GTGTGCTTATGTTGATTCTC+AGG 0.445825 4.1:-20517403 MS.gene028531:intron
ACTGGAACATCAACTTCTCT+TGG 0.450403 4.1:+20518021 None:intergenic
GACTTATTTAAGATAAATGC+TGG 0.454140 4.1:-20518354 MS.gene028531:CDS
AGAGCCAAAGGTGGGGCACC+TGG 0.462007 4.1:-20519025 MS.gene028531:CDS
TGGATTCAAAGTAGCAGTAT+TGG 0.462278 4.1:-20519005 MS.gene028531:CDS
CACTGTGCCAATTGCTGCTG+AGG 0.465597 4.1:-20518250 MS.gene028531:CDS
GCTGGTGTGCCAAGGAAACC+TGG 0.468289 4.1:-20518390 MS.gene028531:CDS
GTAACTCCTAAAAGTCGCTT+TGG 0.469912 4.1:+20518201 None:intergenic
CAGCTTCTCCTTTCAAGCCA+TGG 0.480053 4.1:+20517436 None:intergenic
TCATGCCTCCATGGCTTGAA+AGG 0.483570 4.1:-20517444 MS.gene028531:CDS
CGAACCTTGGTTGCAAAGAA+AGG 0.486614 4.1:+20517281 None:intergenic
CATGGCTTGAAAGGAGAAGC+TGG 0.494384 4.1:-20517435 MS.gene028531:CDS
GGTTTCCTTGGCACACCAGC+AGG 0.501896 4.1:+20518393 None:intergenic
TCATCTTCAACAGCAAAGAA+AGG 0.502586 4.1:+20518957 None:intergenic
CATCTTCAACAGCAAAGAAA+GGG 0.505105 4.1:+20518958 None:intergenic
AGCAGAAGAAATATTTCCAC+TGG 0.507649 4.1:-20517243 MS.gene028531:CDS
AATCGCATTGGGGCAACACT+TGG 0.507819 4.1:+20518302 None:intergenic
AAGGTTCGTCTTGGTCGTGC+TGG 0.507899 4.1:-20517266 MS.gene028531:CDS
TTTGCAACCAAGGTTCGTCT+TGG 0.508454 4.1:-20517275 MS.gene028531:CDS
AATACTTAACAGGATTGGGT+TGG 0.515910 4.1:-20517119 MS.gene028531:intron
TGGTTCTGCAACACTATCAA+TGG 0.521809 4.1:-20517593 MS.gene028531:intron
CTACAGGCTAAAGCTGGGGC+TGG 0.522254 4.1:-20517613 MS.gene028531:intron
ATTGGCACAGTGGAATTCAC+TGG 0.525284 4.1:+20518261 None:intergenic
TACAAAACCTGTGATAAAAG+AGG 0.525888 4.1:+20517967 None:intergenic
GATGAAGAACTGAAACCAAT+GGG 0.526120 4.1:+20518933 None:intergenic
AATCAAGTTGACAATCGCAT+TGG 0.528249 4.1:+20518290 None:intergenic
TACGATGTCGTCAACACCCC+TGG 0.528822 4.1:-20518908 MS.gene028531:CDS
GAAGTTGATGTTCCAGTGGT+AGG 0.529113 4.1:-20518015 MS.gene028531:CDS
AGCACGACCAAGACGAACCT+TGG 0.532157 4.1:+20517268 None:intergenic
ATACCTCTCATACTCATTGA+GGG 0.532183 4.1:+20517217 None:intergenic
TTTGCTAACTCATGCCTCCA+TGG 0.532412 4.1:-20517453 MS.gene028531:CDS
AATACCTCTCATACTCATTG+AGG 0.533233 4.1:+20517216 None:intergenic
CTAACATCAGCTGTGACACC+AGG 0.537382 4.1:+20518890 None:intergenic
GCTGAGGTCTTCAAGAAAGC+TGG 0.540699 4.1:-20518234 MS.gene028531:CDS
TCATACTACAGGCTAAAGCT+GGG 0.547408 4.1:-20517618 MS.gene028531:intron
TATTTGGGTTTCTAGGTTCG+CGG 0.547751 4.1:-20518474 MS.gene028531:intron
TGCACTCACAGGCATGGACT+TGG 0.548590 4.1:-20518424 MS.gene028531:CDS
CAAGGAAACCTGGAATGACC+AGG 0.549218 4.1:-20518380 MS.gene028531:CDS
TATTTGCCCTCACAACATCA+AGG 0.553866 4.1:+20518175 None:intergenic
GTGAGTGCATTCTCAAGTTG+TGG 0.555697 4.1:+20518438 None:intergenic
GTTGGCAGGAAGCATCCAGA+AGG 0.557639 4.1:-20517080 MS.gene028531:CDS
CCAGTGGTAGGAGGTCATGC+AGG 0.559555 4.1:-20518003 MS.gene028531:CDS
AGATGAAGAACTGAAACCAA+TGG 0.559879 4.1:+20518932 None:intergenic
TATCTTAAATAAGTCGTCCC+TGG 0.559911 4.1:+20518362 None:intergenic
TGAGAATGCACTCACAGGCA+TGG 0.564594 4.1:-20518430 MS.gene028531:CDS
TGGTGGAACAGAAGTTGTTG+AGG 0.567512 4.1:-20517799 MS.gene028531:intron
CCTGCATGACCTCCTACCAC+TGG 0.567638 4.1:+20518003 None:intergenic
AAAGCGAAGAAAGAGTTGGC+AGG 0.568245 4.1:-20517094 MS.gene028531:CDS
GATTCAAAGTAGCAGTATTG+GGG 0.568602 4.1:-20519003 MS.gene028531:CDS
AATACTGCTACTTTGAATCC+AGG 0.573479 4.1:+20519007 None:intergenic
GCTGTTGAAGATGAACCCAT+TGG 0.574983 4.1:-20518948 MS.gene028531:CDS
CAACTTGAGAATGCACTCAC+AGG 0.578403 4.1:-20518435 MS.gene028531:CDS
TACAGCCCTTGATGTTGTGA+GGG 0.583709 4.1:-20518181 MS.gene028531:CDS
CACAGCTGATGTTAGTCACA+TGG 0.583816 4.1:-20518882 MS.gene028531:CDS
GACTTGGTAGTTATACCTGC+TGG 0.591481 4.1:-20518408 MS.gene028531:CDS
ACTTCCTTTCTTTGCAACCA+AGG 0.593363 4.1:-20517285 MS.gene028531:CDS
AGAGCTAACTGCAGAGCCAA+AGG 0.594985 4.1:-20519037 MS.gene028531:CDS
ATAGAAATGGAAGCACATGC+AGG 0.595064 4.1:-20519541 None:intergenic
TTACAGCCCTTGATGTTGTG+AGG 0.600332 4.1:-20518182 MS.gene028531:CDS
TTATACCTGCTGGTGTGCCA+AGG 0.602158 4.1:-20518398 MS.gene028531:CDS
CTTCTCCTTTCAAGCCATGG+AGG 0.603278 4.1:+20517439 None:intergenic
ACAAATCGCATTCAAAATGG+TGG 0.604111 4.1:-20517816 MS.gene028531:CDS
TCACATGGACACCGGTGCTG+TGG 0.605555 4.1:-20518867 MS.gene028531:intron
CTAACTGCAGAGCCAAAGGT+GGG 0.608809 4.1:-20519033 MS.gene028531:CDS
AGATAAATGCTGGAATTGTG+AGG 0.611243 4.1:-20518344 MS.gene028531:CDS
GAAAGGAGAAGCTGGAGTGG+TGG 0.612474 4.1:-20517427 MS.gene028531:CDS
GCTAACTGCAGAGCCAAAGG+TGG 0.616454 4.1:-20519034 MS.gene028531:CDS
GTTGATGTTCCAGTGGTAGG+AGG 0.622398 4.1:-20518012 MS.gene028531:CDS
GTCCCCTCAATGAGTATGAG+AGG 0.626340 4.1:-20517220 MS.gene028531:intron
CACATGCAGGAGCCAACCAA+AGG 0.627115 4.1:-20519528 MS.gene028531:CDS
TACCTCTCATACTCATTGAG+GGG 0.629921 4.1:+20517218 None:intergenic
TAACATCAGCTGTGACACCA+GGG 0.641600 4.1:+20518891 None:intergenic
CTCAGCAGCAATTGGCACAG+TGG 0.644156 4.1:+20518251 None:intergenic
TTGGCAGGAAGCATCCAGAA+GGG 0.644240 4.1:-20517079 MS.gene028531:CDS
ATTTGCCCTCACAACATCAA+GGG 0.645316 4.1:+20518176 None:intergenic
CTTGAAAGGAGAAGCTGGAG+TGG 0.646717 4.1:-20517430 MS.gene028531:CDS
AAGAGAAGTTGATGTTCCAG+TGG 0.657736 4.1:-20518019 MS.gene028531:CDS
TACTCATTGAGGGGACCCAG+TGG 0.658052 4.1:+20517227 None:intergenic
GATGTTAGTCACATGGACAC+CGG 0.662524 4.1:-20518875 MS.gene028531:CDS
TAACTGCAGAGCCAAAGGTG+GGG 0.668015 4.1:-20519032 MS.gene028531:CDS
ATTGTGAGGACTCTTTGTGA+AGG 0.672821 4.1:-20518330 MS.gene028531:CDS
GCAGAAGAAATATTTCCACT+GGG 0.677199 4.1:-20517242 MS.gene028531:CDS
TCAAGTTGACAATCGCATTG+GGG 0.678396 4.1:+20518292 None:intergenic
AAGGAAACCTGGAATGACCA+GGG 0.681756 4.1:-20518379 MS.gene028531:CDS
AACATCAGCTGTGACACCAG+GGG 0.685298 4.1:+20518892 None:intergenic
ATTCAAAGTAGCAGTATTGG+GGG 0.691272 4.1:-20519002 MS.gene028531:CDS
TCTGCAGTGAAGCTACTAGG+AGG 0.696329 4.1:+20517855 None:intergenic
CATACTACAGGCTAAAGCTG+GGG 0.698547 4.1:-20517617 MS.gene028531:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATCAATCAATAATATT+CGG + chr4.1:20517283-20517302 None:intergenic 15.0%
!! ATAAATATTATTCATACTAC+AGG - chr4.1:20518963-20518982 MS.gene028531:CDS 15.0%
!! CAAACTATTAATTTCTTTAT+TGG - chr4.1:20519411-20519430 MS.gene028531:intron 15.0%
!! TTAATAGTTTGATAAACTAT+TGG + chr4.1:20519402-20519421 None:intergenic 15.0%
!!! TCTTTACTTCTAATTTTATT+TGG - chr4.1:20518915-20518934 MS.gene028531:CDS 15.0%
!! TGCCTATAAAAAAACAATAT+TGG + chr4.1:20517235-20517254 None:intergenic 20.0%
!! TTTGATGTTTAATACTTAAC+AGG - chr4.1:20519463-20519482 MS.gene028531:intron 20.0%
!!! CTGTAAATTTTGATATGAAA+GGG + chr4.1:20519260-20519279 None:intergenic 20.0%
!!! GATGTCATAAATTTTAAGTA+AGG + chr4.1:20518668-20518687 None:intergenic 20.0%
!!! GTCCAATATTGTTTTTTTAT+AGG - chr4.1:20517230-20517249 MS.gene028531:CDS 20.0%
!!! TTATTTTATTTTTCTCTTGC+AGG - chr4.1:20518528-20518547 MS.gene028531:intron 20.0%
! AAAAAAACCTGCAAATTTGA+AGG + chr4.1:20517117-20517136 None:intergenic 25.0%
! AAAAAACCTGCAAATTTGAA+GGG + chr4.1:20517116-20517135 None:intergenic 25.0%
! CACATCCTTAAAATAAATAG+TGG + chr4.1:20518047-20518066 None:intergenic 25.0%
! GTTTAATACTTAACAGGATT+GGG - chr4.1:20519469-20519488 MS.gene028531:intron 25.0%
! TGTTTAATACTTAACAGGAT+TGG - chr4.1:20519468-20519487 MS.gene028531:intron 25.0%
! TTAAAAACCAAGTTTGAAGA+AGG + chr4.1:20518709-20518728 None:intergenic 25.0%
! TTGATTGATAAGTGTGTATA+AGG - chr4.1:20517290-20517309 MS.gene028531:CDS 25.0%
! TTTGGAAACTTGTAAATTCA+CGG + chr4.1:20517944-20517963 None:intergenic 25.0%
!! GACTTATTTAAGATAAATGC+TGG - chr4.1:20518238-20518257 MS.gene028531:CDS 25.0%
!!! AGGTTTTTTTTTTCTTCCTT+TGG - chr4.1:20517127-20517146 MS.gene028531:intron 25.0%
!!! GCTGTAAATTTTGATATGAA+AGG + chr4.1:20519261-20519280 None:intergenic 25.0%
!!! TCAAGCCACTATTTATTTTA+AGG - chr4.1:20518039-20518058 MS.gene028531:CDS 25.0%
!!! TCTTCAAACTTGGTTTTTAA+AGG - chr4.1:20518709-20518728 MS.gene028531:intron 25.0%
!!! TTTTATCACAGGTTTTGTAA+AGG - chr4.1:20518629-20518648 MS.gene028531:intron 25.0%
ACAAATTTCAGCTTCAGTAA+TGG - chr4.1:20517908-20517927 MS.gene028531:intron 30.0%
ACTATTGTATGAGTATATGC+TGG - chr4.1:20518494-20518513 MS.gene028531:intron 30.0%
CGAATGATGCAAGTATATTT+GGG - chr4.1:20518103-20518122 MS.gene028531:intron 30.0%
CTAAACATGATTGATTGTGT+AGG - chr4.1:20519099-20519118 MS.gene028531:intron 30.0%
GCATATACTCATACAATAGT+AGG + chr4.1:20518494-20518513 None:intergenic 30.0%
GCTAGAAAGTTCAATGATAT+TGG - chr4.1:20517168-20517187 MS.gene028531:intron 30.0%
TACAAAACCTGTGATAAAAG+AGG + chr4.1:20518628-20518647 None:intergenic 30.0%
TCGAATGATGCAAGTATATT+TGG - chr4.1:20518102-20518121 MS.gene028531:intron 30.0%
TTATACTCCAATCGCATATT+AGG + chr4.1:20518848-20518867 None:intergenic 30.0%
TTATTGGAAGCAACAAACAA+AGG - chr4.1:20519427-20519446 MS.gene028531:intron 30.0%
TTTATCACCTAATATGCGAT+TGG - chr4.1:20518838-20518857 MS.gene028531:intron 30.0%
! AAGATAAAGAGCATGCATAA+GGG + chr4.1:20519237-20519256 None:intergenic 30.0%
! AATATTGCCTCTTTTATCAC+AGG - chr4.1:20518618-20518637 MS.gene028531:intron 30.0%
! GTAACAGTTGTGTTTTTCTT+TGG - chr4.1:20517999-20518018 MS.gene028531:CDS 30.0%
!! AAGAAGGATAAGCTTGTTAA+CGG - chr4.1:20518866-20518885 MS.gene028531:intron 30.0%
AAGAAAAATTACCACAGCAC+CGG + chr4.1:20517739-20517758 None:intergenic 35.0%
AATACCTCTCATACTCATTG+AGG + chr4.1:20519379-20519398 None:intergenic 35.0%
AATACTTAACAGGATTGGGT+TGG - chr4.1:20519473-20519492 MS.gene028531:intron 35.0%
AATGCGATTTGTCAGGTATT+CGG + chr4.1:20518768-20518787 None:intergenic 35.0%
AATTGGTATCAATTGTGTCC+CGG - chr4.1:20519064-20519083 MS.gene028531:CDS 35.0%
ACAAATCGCATTCAAAATGG+TGG - chr4.1:20518776-20518795 MS.gene028531:intron 35.0%
AGATAAATGCTGGAATTGTG+AGG - chr4.1:20518248-20518267 MS.gene028531:CDS 35.0%
AGATGAAGAACTGAAACCAA+TGG + chr4.1:20517663-20517682 None:intergenic 35.0%
AGCAGAAGAAATATTTCCAC+TGG - chr4.1:20519349-20519368 MS.gene028531:intron 35.0%
AGCCGATAGGGTATAAATTA+GGG - chr4.1:20517374-20517393 MS.gene028531:intron 35.0%
ATACCTCTCATACTCATTGA+GGG + chr4.1:20519378-20519397 None:intergenic 35.0%
ATTCAATTACGAGAGAGAAG+AGG + chr4.1:20518465-20518484 None:intergenic 35.0%
CACTAAACCTTCTTCAAACT+TGG - chr4.1:20518699-20518718 MS.gene028531:intron 35.0%
CATCTTCAACAGCAAAGAAA+GGG + chr4.1:20517637-20517656 None:intergenic 35.0%
CGATGTCACTGCTTAAATTT+CGG - chr4.1:20517435-20517454 MS.gene028531:CDS 35.0%
CTGACAAATCGCATTCAAAA+TGG - chr4.1:20518773-20518792 MS.gene028531:intron 35.0%
GATGAAGAACTGAAACCAAT+GGG + chr4.1:20517662-20517681 None:intergenic 35.0%
GATTCAAAGTAGCAGTATTG+GGG - chr4.1:20517589-20517608 MS.gene028531:intron 35.0%
GCAGAAGAAATATTTCCACT+GGG - chr4.1:20519350-20519369 MS.gene028531:intron 35.0%
GGATTCAAAGTAGCAGTATT+GGG - chr4.1:20517588-20517607 MS.gene028531:intron 35.0%
GGGAAAAAAGGACTTGAAAT+TGG + chr4.1:20519217-20519236 None:intergenic 35.0%
TAATGAATTCTACTCCCTTC+TGG + chr4.1:20519530-20519549 None:intergenic 35.0%
TATCTTAAATAAGTCGTCCC+TGG + chr4.1:20518233-20518252 None:intergenic 35.0%
TATGCGATTGGAGTATAAGA+AGG - chr4.1:20518850-20518869 MS.gene028531:intron 35.0%
TCATCTTCAACAGCAAAGAA+AGG + chr4.1:20517638-20517657 None:intergenic 35.0%
TGGATTCAAAGTAGCAGTAT+TGG - chr4.1:20517587-20517606 MS.gene028531:intron 35.0%
TTAAATTTCGGCCCAAATCA+CGG - chr4.1:20517447-20517466 MS.gene028531:CDS 35.0%
! ATTCAAAGTAGCAGTATTGG+GGG - chr4.1:20517590-20517609 MS.gene028531:intron 35.0%
! CATTTTGAATGCGATTTGTC+AGG + chr4.1:20518775-20518794 None:intergenic 35.0%
! GAAGATAAAGAGCATGCATA+AGG + chr4.1:20519238-20519257 None:intergenic 35.0%
! GCAAGTATATTTGGGTTTCT+AGG - chr4.1:20518111-20518130 MS.gene028531:intron 35.0%
! TATGATCCAAAGCGACTTTT+AGG - chr4.1:20518385-20518404 MS.gene028531:CDS 35.0%
! TATGTCTGTTTTGTGATGAC+AGG - chr4.1:20517509-20517528 MS.gene028531:intron 35.0%
!! AATACTGCTACTTTGAATCC+AGG + chr4.1:20517588-20517607 None:intergenic 35.0%
!! AATCAAGTTGACAATCGCAT+TGG + chr4.1:20518305-20518324 None:intergenic 35.0%
!! ATCAAGTTGACAATCGCATT+GGG + chr4.1:20518304-20518323 None:intergenic 35.0%
!! TGTTTTTCTTTGGTTCAACC+TGG - chr4.1:20518009-20518028 MS.gene028531:CDS 35.0%
AAGTCACGTTCAAAGTGCAT+AGG + chr4.1:20517878-20517897 None:intergenic 40.0%
AATTTCCACGCACACTCAAT+TGG - chr4.1:20519047-20519066 MS.gene028531:CDS 40.0%
ACTGGAACATCAACTTCTCT+TGG + chr4.1:20518574-20518593 None:intergenic 40.0%
ACTTCCTTTCTTTGCAACCA+AGG - chr4.1:20519307-20519326 MS.gene028531:intron 40.0%
ATATATTTGCAGCCGCAACA+CGG + chr4.1:20517400-20517419 None:intergenic 40.0%
ATTGTGAGGACTCTTTGTGA+AGG - chr4.1:20518262-20518281 MS.gene028531:CDS 40.0%
ATTTGCCCTCACAACATCAA+GGG + chr4.1:20518419-20518438 None:intergenic 40.0%
CAGAGATTCTTGCAATCCTT+TGG + chr4.1:20517083-20517102 None:intergenic 40.0%
CAGCCGATAGGGTATAAATT+AGG - chr4.1:20517373-20517392 MS.gene028531:intron 40.0%
CGTTAGCTGAATGAAACCAA+AGG + chr4.1:20517146-20517165 None:intergenic 40.0%
GAACATGAGAATTGTCAACG+CGG + chr4.1:20517856-20517875 None:intergenic 40.0%
GAGCATGCATAAGGGAAAAA+AGG + chr4.1:20519229-20519248 None:intergenic 40.0%
GATTCTTGCAATCCTTTGGT+TGG + chr4.1:20517079-20517098 None:intergenic 40.0%
GGAAAAAGCGAAGAAAGAGT+TGG - chr4.1:20519494-20519513 MS.gene028531:CDS 40.0%
GGCCCTAATTTATACCCTAT+CGG + chr4.1:20517379-20517398 None:intergenic 40.0%
GTAACTCCTAAAAGTCGCTT+TGG + chr4.1:20518394-20518413 None:intergenic 40.0%
TACCTCTCATACTCATTGAG+GGG + chr4.1:20519377-20519396 None:intergenic 40.0%
TATAAATTAGGGCCGTGTTG+CGG - chr4.1:20517385-20517404 MS.gene028531:intron 40.0%
TATTTGCCCTCACAACATCA+AGG + chr4.1:20518420-20518439 None:intergenic 40.0%
TCATACTACAGGCTAAAGCT+GGG - chr4.1:20518974-20518993 MS.gene028531:CDS 40.0%
TCTTCACCCTTCAAATTTGC+AGG - chr4.1:20517107-20517126 MS.gene028531:CDS 40.0%
TGTTTAGTTAGTCCCTCTAC+CGG + chr4.1:20519086-20519105 None:intergenic 40.0%
TTCATACTACAGGCTAAAGC+TGG - chr4.1:20518973-20518992 MS.gene028531:CDS 40.0%
TTTCAGCTTCAGTAATGGCA+CGG - chr4.1:20517913-20517932 MS.gene028531:intron 40.0%
! TATTTGGGTTTCTAGGTTCG+CGG - chr4.1:20518118-20518137 MS.gene028531:intron 40.0%
! TATTTTTCTCTTGCAGGCAG+AGG - chr4.1:20518534-20518553 MS.gene028531:intron 40.0%
! TCTGTTTTGTGATGACAGGA+AGG - chr4.1:20517513-20517532 MS.gene028531:intron 40.0%
! TGGTTCTGCAACACTATCAA+TGG - chr4.1:20518999-20519018 MS.gene028531:CDS 40.0%
! TGTGAGGGCAAATACTTTTG+TGG - chr4.1:20518426-20518445 MS.gene028531:CDS 40.0%
!! AAGAGAAGTTGATGTTCCAG+TGG - chr4.1:20518573-20518592 MS.gene028531:intron 40.0%
!! GTGTGCTTATGTTGATTCTC+AGG - chr4.1:20519189-20519208 MS.gene028531:intron 40.0%
!! TCAAGTTGACAATCGCATTG+GGG + chr4.1:20518303-20518322 None:intergenic 40.0%
AAAGCGAAGAAAGAGTTGGC+AGG - chr4.1:20519498-20519517 MS.gene028531:CDS 45.0%
AAATGTCTGCCACCGTGATT+TGG + chr4.1:20517462-20517481 None:intergenic 45.0%
AACAGTCAAATGCAGCCGAT+AGG - chr4.1:20517361-20517380 MS.gene028531:intron 45.0%
AAGGAAACCTGGAATGACCA+GGG - chr4.1:20518213-20518232 MS.gene028531:CDS 45.0%
AATGTCTGCCACCGTGATTT+GGG + chr4.1:20517461-20517480 None:intergenic 45.0%
ACAGTCAAATGCAGCCGATA+GGG - chr4.1:20517362-20517381 MS.gene028531:intron 45.0%
AGCAGTGACATCGAAGTTCT+TGG + chr4.1:20517428-20517447 None:intergenic 45.0%
AGTTTCCAAACACGCAGTAG+TGG - chr4.1:20517954-20517973 MS.gene028531:intron 45.0%
ATCAATTGTGTCCCGGTAGA+GGG - chr4.1:20519071-20519090 MS.gene028531:intron 45.0%
ATTGGCACAGTGGAATTCAC+TGG + chr4.1:20518334-20518353 None:intergenic 45.0%
CAACTTGAGAATGCACTCAC+AGG - chr4.1:20518157-20518176 MS.gene028531:intron 45.0%
CACAGCTGATGTTAGTCACA+TGG - chr4.1:20517710-20517729 MS.gene028531:intron 45.0%
CATACTACAGGCTAAAGCTG+GGG - chr4.1:20518975-20518994 MS.gene028531:CDS 45.0%
CGAACCTTGGTTGCAAAGAA+AGG + chr4.1:20519314-20519333 None:intergenic 45.0%
CGCGTGTCTTCAATAGGTTA+CGG - chr4.1:20519283-20519302 MS.gene028531:intron 45.0%
GATGTTAGTCACATGGACAC+CGG - chr4.1:20517717-20517736 MS.gene028531:intron 45.0%
GCTGTTGAAGATGAACCCAT+TGG - chr4.1:20517644-20517663 MS.gene028531:intron 45.0%
GTTTAGTTAGTCCCTCTACC+GGG + chr4.1:20519085-20519104 None:intergenic 45.0%
TAACATCAGCTGTGACACCA+GGG + chr4.1:20517704-20517723 None:intergenic 45.0%
TACAGCCCTTGATGTTGTGA+GGG - chr4.1:20518411-20518430 MS.gene028531:CDS 45.0%
TAGTGGCTTGAACAGAATCC+AGG + chr4.1:20518030-20518049 None:intergenic 45.0%
TATCAATTGTGTCCCGGTAG+AGG - chr4.1:20519070-20519089 MS.gene028531:intron 45.0%
TCTTCTGCAGTGAAGCTACT+AGG + chr4.1:20518743-20518762 None:intergenic 45.0%
TGATACCAATTGAGTGTGCG+TGG + chr4.1:20519055-20519074 None:intergenic 45.0%
TGGTGGAACAGAAGTTGTTG+AGG - chr4.1:20518793-20518812 MS.gene028531:intron 45.0%
TTACAGCCCTTGATGTTGTG+AGG - chr4.1:20518410-20518429 MS.gene028531:CDS 45.0%
TTGAAGACCTCAGCAGCAAT+TGG + chr4.1:20518352-20518371 None:intergenic 45.0%
TTTGCAACCAAGGTTCGTCT+TGG - chr4.1:20519317-20519336 MS.gene028531:intron 45.0%
TTTGCTAACTCATGCCTCCA+TGG - chr4.1:20519139-20519158 MS.gene028531:intron 45.0%
! GACTTGGTAGTTATACCTGC+TGG - chr4.1:20518184-20518203 MS.gene028531:CDS 45.0%
! GTGAGTGCATTCTCAAGTTG+TGG + chr4.1:20518157-20518176 None:intergenic 45.0%
! GTTTTGTGATGACAGGAAGG+AGG - chr4.1:20517516-20517535 MS.gene028531:intron 45.0%
! TTCTAGGTTCGCGGCTTTTT+GGG - chr4.1:20518127-20518146 MS.gene028531:intron 45.0%
! TTTCTAGGTTCGCGGCTTTT+TGG - chr4.1:20518126-20518145 MS.gene028531:intron 45.0%
!! GAAGTTGATGTTCCAGTGGT+AGG - chr4.1:20518577-20518596 MS.gene028531:intron 45.0%
!! AAAAAAATTTAAATCATATT+TGG - chr4.1:20517823-20517842 MS.gene028531:CDS 5.0%
AACATCAGCTGTGACACCAG+GGG + chr4.1:20517703-20517722 None:intergenic 50.0%
AATCGCATTGGGGCAACACT+TGG + chr4.1:20518293-20518312 None:intergenic 50.0%
AATTTCGGCCCAAATCACGG+TGG - chr4.1:20517450-20517469 MS.gene028531:CDS 50.0%
AGAGCTAACTGCAGAGCCAA+AGG - chr4.1:20517555-20517574 MS.gene028531:intron 50.0%
CAAGGAAACCTGGAATGACC+AGG - chr4.1:20518212-20518231 MS.gene028531:CDS 50.0%
CAGCTTCTCCTTTCAAGCCA+TGG + chr4.1:20519159-20519178 None:intergenic 50.0%
CATGGCTTGAAAGGAGAAGC+TGG - chr4.1:20519157-20519176 MS.gene028531:intron 50.0%
CTAACATCAGCTGTGACACC+AGG + chr4.1:20517705-20517724 None:intergenic 50.0%
CTAACTGCAGAGCCAAAGGT+GGG - chr4.1:20517559-20517578 MS.gene028531:intron 50.0%
CTGGTCATTCCAGGTTTCCT+TGG + chr4.1:20518214-20518233 None:intergenic 50.0%
CTTCTCCTTTCAAGCCATGG+AGG + chr4.1:20519156-20519175 None:intergenic 50.0%
CTTGAAAGGAGAAGCTGGAG+TGG - chr4.1:20519162-20519181 MS.gene028531:intron 50.0%
GCTGAGGTCTTCAAGAAAGC+TGG - chr4.1:20518358-20518377 MS.gene028531:CDS 50.0%
GTCCCCTCAATGAGTATGAG+AGG - chr4.1:20519372-20519391 MS.gene028531:intron 50.0%
GTTGATGTTCCAGTGGTAGG+AGG - chr4.1:20518580-20518599 MS.gene028531:intron 50.0%
TAACTGCAGAGCCAAAGGTG+GGG - chr4.1:20517560-20517579 MS.gene028531:intron 50.0%
TCATGCCTCCATGGCTTGAA+AGG - chr4.1:20519148-20519167 MS.gene028531:intron 50.0%
TCTGCAGTGAAGCTACTAGG+AGG + chr4.1:20518740-20518759 None:intergenic 50.0%
TGAGAATGCACTCACAGGCA+TGG - chr4.1:20518162-20518181 MS.gene028531:intron 50.0%
TTATACCTGCTGGTGTGCCA+AGG - chr4.1:20518194-20518213 MS.gene028531:CDS 50.0%
! TCTAGGTTCGCGGCTTTTTG+GGG - chr4.1:20518128-20518147 MS.gene028531:intron 50.0%
!! TTGGCAGGAAGCATCCAGAA+GGG - chr4.1:20519513-20519532 MS.gene028531:CDS 50.0%
AAGGTTCGTCTTGGTCGTGC+TGG - chr4.1:20519326-20519345 MS.gene028531:intron 55.0%
AAGTCGTCCCTGGTCATTCC+AGG + chr4.1:20518223-20518242 None:intergenic 55.0%
AGCACGACCAAGACGAACCT+TGG + chr4.1:20519327-20519346 None:intergenic 55.0%
CACAGCCACTACTGCGTGTT+TGG + chr4.1:20517962-20517981 None:intergenic 55.0%
CACATGCAGGAGCCAACCAA+AGG - chr4.1:20517064-20517083 MS.gene028531:CDS 55.0%
CACTGTGCCAATTGCTGCTG+AGG - chr4.1:20518342-20518361 MS.gene028531:CDS 55.0%
CAGCAGCGCGTGTCTTCAAT+AGG - chr4.1:20519277-20519296 MS.gene028531:intron 55.0%
CTCAGCAGCAATTGGCACAG+TGG + chr4.1:20518344-20518363 None:intergenic 55.0%
GAAAGGAGAAGCTGGAGTGG+TGG - chr4.1:20519165-20519184 MS.gene028531:intron 55.0%
GCTAACTGCAGAGCCAAAGG+TGG - chr4.1:20517558-20517577 MS.gene028531:intron 55.0%
TACGATGTCGTCAACACCCC+TGG - chr4.1:20517684-20517703 MS.gene028531:intron 55.0%
TACTCATTGAGGGGACCCAG+TGG + chr4.1:20519368-20519387 None:intergenic 55.0%
TGCACTCACAGGCATGGACT+TGG - chr4.1:20518168-20518187 MS.gene028531:CDS 55.0%
!! CTCTTGCAGGCAGAGGTACT+TGG - chr4.1:20518541-20518560 MS.gene028531:intron 55.0%
!! GTTGGCAGGAAGCATCCAGA+AGG - chr4.1:20519512-20519531 MS.gene028531:CDS 55.0%
CCAGTGGTAGGAGGTCATGC+AGG - chr4.1:20518589-20518608 MS.gene028531:intron 60.0%
CCTGCATGACCTCCTACCAC+TGG + chr4.1:20518592-20518611 None:intergenic 60.0%
CTACAGGCTAAAGCTGGGGC+TGG - chr4.1:20518979-20518998 MS.gene028531:CDS 60.0%
GAATCCAGGTGCCCCACCTT+TGG + chr4.1:20517574-20517593 None:intergenic 60.0%
GCTGGTGTGCCAAGGAAACC+TGG - chr4.1:20518202-20518221 MS.gene028531:CDS 60.0%
GGTTTCCTTGGCACACCAGC+AGG + chr4.1:20518202-20518221 None:intergenic 60.0%
TTGGGGGCTGCTGGTGGAAT+TGG - chr4.1:20517606-20517625 MS.gene028531:CDS 60.0%
! GTAGCAGTATTGGGGGCTGC+TGG - chr4.1:20517597-20517616 MS.gene028531:CDS 60.0%
! TCACATGGACACCGGTGCTG+TGG - chr4.1:20517725-20517744 MS.gene028531:intron 60.0%
! AGAGCCAAAGGTGGGGCACC+TGG - chr4.1:20517567-20517586 MS.gene028531:intron 65.0%
! GCAGTATTGGGGGCTGCTGG+TGG - chr4.1:20517600-20517619 MS.gene028531:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 20517057 20519557 20517057 ID=MS.gene028531
chr4.1 mRNA 20517057 20519557 20517057 ID=MS.gene028531.t1;Parent=MS.gene028531
chr4.1 exon 20519486 20519557 20519486 ID=MS.gene028531.t1.exon1;Parent=MS.gene028531.t1
chr4.1 CDS 20519486 20519557 20519486 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
chr4.1 exon 20518868 20519083 20518868 ID=MS.gene028531.t1.exon2;Parent=MS.gene028531.t1
chr4.1 CDS 20518868 20519083 20518868 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
chr4.1 exon 20518167 20518481 20518167 ID=MS.gene028531.t1.exon3;Parent=MS.gene028531.t1
chr4.1 CDS 20518167 20518481 20518167 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
chr4.1 exon 20517975 20518064 20517975 ID=MS.gene028531.t1.exon4;Parent=MS.gene028531.t1
chr4.1 CDS 20517975 20518064 20517975 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
chr4.1 exon 20517800 20517883 20517800 ID=MS.gene028531.t1.exon5;Parent=MS.gene028531.t1
chr4.1 CDS 20517800 20517883 20517800 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
chr4.1 exon 20517594 20517629 20517594 ID=MS.gene028531.t1.exon6;Parent=MS.gene028531.t1
chr4.1 CDS 20517594 20517629 20517594 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
chr4.1 exon 20517404 20517493 20517404 ID=MS.gene028531.t1.exon7;Parent=MS.gene028531.t1
chr4.1 CDS 20517404 20517493 20517404 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
chr4.1 exon 20517221 20517315 20517221 ID=MS.gene028531.t1.exon8;Parent=MS.gene028531.t1
chr4.1 CDS 20517221 20517315 20517221 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
chr4.1 exon 20517057 20517129 20517057 ID=MS.gene028531.t1.exon9;Parent=MS.gene028531.t1
chr4.1 CDS 20517057 20517129 20517057 ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1
Gene Sequence

>MS.gene028531

ATGGAAGCACATGCAGGAGCCAACCAAAGGATTGCAAGAATCTCTGCTCATCTTCACCCTTCAAATTTGCAGGTTTTTTTTTTCTTCCTTTGGTTTCATTCAGCTAACGTAGCTAGAAAGTTCAATGATATTGGTTTGTATTACTTGCATGATAAACTTGAGTTTTCACTGTTGTCCAATATTGTTTTTTTATAGGCAAATGTTAGTAATTAATTAATTGTTGCCGAATATTATTGATTGATAAGTGTGTATAAGGTTTTAAATTTTGCAAATTCGCATAGCAAATCTTGATATTACAGATAATAACAGTCAAATGCAGCCGATAGGGTATAAATTAGGGCCGTGTTGCGGCTGCAAATATATCAAAACCAAGAACTTCGATGTCACTGCTTAAATTTCGGCCCAAATCACGGTGGCAGACATTTTATCTTAAAATTATTGTGTATGAATGCTATGTCTGTTTTGTGATGACAGGAAGGAGGTGATGTTGTAATTGACAGAGCTAACTGCAGAGCCAAAGGTGGGGCACCTGGATTCAAAGTAGCAGTATTGGGGGCTGCTGGTGGAATTGGTCAATCCCTTTCTTTGCTGTTGAAGATGAACCCATTGGTTTCAGTTCTTCATCTTTACGATGTCGTCAACACCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACCGGTGCTGTGGTAATTTTTCTTTTTCATCACTTTTCTATTTTTTTTTTCTATTTAACATAATGTTGATATCATCTAAAATTGTATCAAAAAAATTTAAATCATATTTGGTTGTGTGCCGCGTTGACAATTCTCATGTTCCTATGCACTTTGAACGTGACTTTATTGAAGCAACAAATTTCAGCTTCAGTAATGGCACGGTGACACCGTGAATTTACAAGTTTCCAAACACGCAGTAGTGGCTGTGCTAATTCATAGTGAATAGTAACAGTTGTGTTTTTCTTTGGTTCAACCTGGATTCTGTTCAAGCCACTATTTATTTTAAGGATGTGCGAGTTGTTTTAACAATATTTAGCTTCTATTATGTTCGAATGATGCAAGTATATTTGGGTTTCTAGGTTCGCGGCTTTTTGGGGCAACCACAACTTGAGAATGCACTCACAGGCATGGACTTGGTAGTTATACCTGCTGGTGTGCCAAGGAAACCTGGAATGACCAGGGACGACTTATTTAAGATAAATGCTGGAATTGTGAGGACTCTTTGTGAAGGAATTGCCAAGTGTTGCCCCAATGCGATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTGCCAATTGCTGCTGAGGTCTTCAAGAAAGCTGGTACATATGATCCAAAGCGACTTTTAGGAGTTACAGCCCTTGATGTTGTGAGGGCAAATACTTTTGTGGTAAGCATAGCTTTCCTCTTCTCTCTCGTAATTGAATTTCGTTCCTACTATTGTATGAGTATATGCTGGTGTATTTTATTTTATTTTATTTTTCTCTTGCAGGCAGAGGTACTTGGTGTTGATCCAAGAGAAGTTGATGTTCCAGTGGTAGGAGGTCATGCAGGAGTCACAATATTGCCTCTTTTATCACAGGTTTTGTAAAGGATACTTGATACTTCCTTACTTAAAATTTATGACATCGTTAAACAAGTCACTAAACCTTCTTCAAACTTGGTTTTTAAAGGTTAAGCCTCCTAGTAGCTTCACTGCAGAAGAAACCGAATACCTGACAAATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGTAATGTTCATATAAGTAACGAGTTTATCACCTAATATGCGATTGGAGTATAAGAAGGATAAGCTTGTTAACGGATTGATAATTTACACTGAACTTCATTTCTTTACTTCTAATTTTATTTGGCTTATGACTGATTGACTATAATCTAATAAATATTATTCATACTACAGGCTAAAGCTGGGGCTGGTTCTGCAACACTATCAATGGTTAATAGTTTATCTCAATATTTCTAAATTTCCACGCACACTCAATTGGTATCAATTGTGTCCCGGTAGAGGGACTAACTAAACATGATTGATTGTGTAGGCATATGCAGCTGCTAAGTTTGCTAACTCATGCCTCCATGGCTTGAAAGGAGAAGCTGGAGTGGTGGAGTGTGCTTATGTTGATTCTCAGGTGCCAATTTCAAGTCCTTTTTTCCCTTATGCATGCTCTTTATCTTCCCTTTCATATCAAAATTTACAGCAGCGCGTGTCTTCAATAGGTTACGGAACTTCCTTTCTTTGCAACCAAGGTTCGTCTTGGTCGTGCTGGAGCAGAAGAAATATTTCCACTGGGTCCCCTCAATGAGTATGAGAGGTATTCCAATAGTTTATCAAACTATTAATTTCTTTATTGGAAGCAACAAACAAAGGAAAATGTTAAAATTTTGATGTTTAATACTTAACAGGATTGGGTTGGAAAAAGCGAAGAAAGAGTTGGCAGGAAGCATCCAGAAGGGAGTAGAATTCATTAAAAAATAA

Protein sequence

>MS.gene028531.t1

MEAHAGANQRIARISAHLHPSNLQEGGDVVIDRANCRAKGGAPGFKVAVLGAAGGIGQSLSLLLKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTALDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSCLHGLKGEAGVVECAYVDSQVTELPFFATKVRLGRAGAEEIFPLGPLNEYERIGLEKAKKELAGSIQKGVEFIKK