Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028531.t1 | XP_003608327.1 | 98.9 | 356 | 4 | 0 | 1 | 356 | 1 | 356 | 3.70E-195 | 690.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028531.t1 | Q9ZP05 | 86.0 | 356 | 48 | 1 | 1 | 356 | 1 | 354 | 6.0e-170 | 598.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028531.t1 | G7JTZ0 | 98.9 | 356 | 4 | 0 | 1 | 356 | 1 | 356 | 2.7e-195 | 690.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene015298 | MS.gene028531 | PPI |
MS.gene028531 | MS.gene09966 | PPI |
MS.gene028531 | MS.gene007924 | PPI |
MS.gene028531 | MS.gene21162 | PPI |
MS.gene028531 | MS.gene015443 | PPI |
MS.gene58427 | MS.gene028531 | PPI |
MS.gene028531 | MS.gene032254 | PPI |
MS.gene028531 | MS.gene21451 | PPI |
MS.gene028531 | MS.gene40601 | PPI |
MS.gene09641 | MS.gene028531 | PPI |
MS.gene34257 | MS.gene028531 | PPI |
MS.gene21450 | MS.gene028531 | PPI |
MS.gene028531 | MS.gene36022 | PPI |
MS.gene028531 | MS.gene025802 | PPI |
MS.gene028531 | MS.gene061723 | PPI |
MS.gene028531 | MS.gene033119 | PPI |
MS.gene059657 | MS.gene028531 | PPI |
MS.gene028531 | MS.gene025803 | PPI |
MS.gene028531 | MS.gene044386 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028531.t1 | MTR_4g092690 | 98.876 | 356 | 4 | 0 | 1 | 356 | 1 | 356 | 0.0 | 713 |
MS.gene028531.t1 | MTR_5g014710 | 80.168 | 358 | 69 | 1 | 1 | 356 | 1 | 358 | 0.0 | 592 |
MS.gene028531.t1 | MTR_8g463760 | 64.744 | 312 | 109 | 1 | 43 | 353 | 29 | 340 | 8.13e-140 | 400 |
MS.gene028531.t1 | MTR_8g463760 | 70.526 | 190 | 56 | 0 | 43 | 232 | 29 | 218 | 1.60e-88 | 267 |
MS.gene028531.t1 | MTR_2g021700 | 93.333 | 60 | 4 | 0 | 202 | 261 | 43 | 102 | 3.17e-31 | 115 |
MS.gene028531.t1 | MTR_2g045010 | 93.333 | 60 | 4 | 0 | 202 | 261 | 43 | 102 | 3.17e-31 | 115 |
MS.gene028531.t1 | MTR_4g033285 | 96.296 | 54 | 2 | 0 | 202 | 255 | 43 | 96 | 2.21e-28 | 106 |
MS.gene028531.t1 | MTR_4g121520 | 65.517 | 58 | 5 | 1 | 202 | 259 | 3 | 45 | 2.49e-13 | 71.2 |
MS.gene028531.t1 | MTR_5g012390 | 24.125 | 257 | 162 | 10 | 46 | 283 | 39 | 281 | 1.68e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028531.t1 | AT5G09660 | 85.955 | 356 | 48 | 1 | 1 | 356 | 1 | 354 | 0.0 | 602 |
MS.gene028531.t1 | AT5G09660 | 85.674 | 356 | 48 | 2 | 1 | 356 | 1 | 353 | 0.0 | 596 |
MS.gene028531.t1 | AT2G22780 | 80.627 | 351 | 66 | 1 | 8 | 356 | 4 | 354 | 0.0 | 578 |
MS.gene028531.t1 | AT5G09660 | 87.651 | 332 | 41 | 0 | 25 | 356 | 2 | 333 | 0.0 | 578 |
MS.gene028531.t1 | AT5G09660 | 85.762 | 302 | 41 | 1 | 1 | 302 | 1 | 300 | 0.0 | 507 |
MS.gene028531.t1 | AT5G09660 | 87.770 | 278 | 34 | 0 | 25 | 302 | 2 | 279 | 2.89e-172 | 483 |
MS.gene028531.t1 | AT1G53240 | 64.873 | 316 | 111 | 0 | 38 | 353 | 23 | 338 | 4.57e-146 | 416 |
MS.gene028531.t1 | AT3G15020 | 65.595 | 311 | 107 | 0 | 43 | 353 | 28 | 338 | 2.01e-144 | 412 |
MS.gene028531.t1 | AT3G47520 | 63.226 | 310 | 112 | 1 | 44 | 351 | 82 | 391 | 2.61e-136 | 394 |
MS.gene028531.t1 | AT3G15020 | 67.153 | 274 | 90 | 0 | 43 | 316 | 28 | 301 | 3.89e-128 | 370 |
Find 103 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATGAATTCTACTCCCTTC+TGG | 0.272096 | 4.1:+20517065 | None:intergenic |
TCTTCACCCTTCAAATTTGC+AGG | 0.278875 | 4.1:-20519485 | MS.gene028531:intron |
GAATCCAGGTGCCCCACCTT+TGG | 0.330579 | 4.1:+20519021 | None:intergenic |
GGATTCAAAGTAGCAGTATT+GGG | 0.336673 | 4.1:-20519004 | MS.gene028531:CDS |
CTGGTCATTCCAGGTTTCCT+TGG | 0.341674 | 4.1:+20518381 | None:intergenic |
CTGACAAATCGCATTCAAAA+TGG | 0.343591 | 4.1:-20517819 | MS.gene028531:CDS |
CTCTTGCAGGCAGAGGTACT+TGG | 0.352335 | 4.1:-20518051 | MS.gene028531:intron |
CAGAGATTCTTGCAATCCTT+TGG | 0.365549 | 4.1:+20519512 | None:intergenic |
AATGCGATTTGTCAGGTATT+CGG | 0.372408 | 4.1:+20517827 | None:intergenic |
AAGTCGTCCCTGGTCATTCC+AGG | 0.386910 | 4.1:+20518372 | None:intergenic |
ATCAAGTTGACAATCGCATT+GGG | 0.397138 | 4.1:+20518291 | None:intergenic |
TCTTCTGCAGTGAAGCTACT+AGG | 0.411408 | 4.1:+20517852 | None:intergenic |
TTCATACTACAGGCTAAAGC+TGG | 0.423720 | 4.1:-20517619 | MS.gene028531:intron |
TTGAAGACCTCAGCAGCAAT+TGG | 0.432472 | 4.1:+20518243 | None:intergenic |
GATTCTTGCAATCCTTTGGT+TGG | 0.437303 | 4.1:+20519516 | None:intergenic |
GTGTGCTTATGTTGATTCTC+AGG | 0.445825 | 4.1:-20517403 | MS.gene028531:intron |
ACTGGAACATCAACTTCTCT+TGG | 0.450403 | 4.1:+20518021 | None:intergenic |
GACTTATTTAAGATAAATGC+TGG | 0.454140 | 4.1:-20518354 | MS.gene028531:CDS |
AGAGCCAAAGGTGGGGCACC+TGG | 0.462007 | 4.1:-20519025 | MS.gene028531:CDS |
TGGATTCAAAGTAGCAGTAT+TGG | 0.462278 | 4.1:-20519005 | MS.gene028531:CDS |
CACTGTGCCAATTGCTGCTG+AGG | 0.465597 | 4.1:-20518250 | MS.gene028531:CDS |
GCTGGTGTGCCAAGGAAACC+TGG | 0.468289 | 4.1:-20518390 | MS.gene028531:CDS |
GTAACTCCTAAAAGTCGCTT+TGG | 0.469912 | 4.1:+20518201 | None:intergenic |
CAGCTTCTCCTTTCAAGCCA+TGG | 0.480053 | 4.1:+20517436 | None:intergenic |
TCATGCCTCCATGGCTTGAA+AGG | 0.483570 | 4.1:-20517444 | MS.gene028531:CDS |
CGAACCTTGGTTGCAAAGAA+AGG | 0.486614 | 4.1:+20517281 | None:intergenic |
CATGGCTTGAAAGGAGAAGC+TGG | 0.494384 | 4.1:-20517435 | MS.gene028531:CDS |
GGTTTCCTTGGCACACCAGC+AGG | 0.501896 | 4.1:+20518393 | None:intergenic |
TCATCTTCAACAGCAAAGAA+AGG | 0.502586 | 4.1:+20518957 | None:intergenic |
CATCTTCAACAGCAAAGAAA+GGG | 0.505105 | 4.1:+20518958 | None:intergenic |
AGCAGAAGAAATATTTCCAC+TGG | 0.507649 | 4.1:-20517243 | MS.gene028531:CDS |
AATCGCATTGGGGCAACACT+TGG | 0.507819 | 4.1:+20518302 | None:intergenic |
AAGGTTCGTCTTGGTCGTGC+TGG | 0.507899 | 4.1:-20517266 | MS.gene028531:CDS |
TTTGCAACCAAGGTTCGTCT+TGG | 0.508454 | 4.1:-20517275 | MS.gene028531:CDS |
AATACTTAACAGGATTGGGT+TGG | 0.515910 | 4.1:-20517119 | MS.gene028531:intron |
TGGTTCTGCAACACTATCAA+TGG | 0.521809 | 4.1:-20517593 | MS.gene028531:intron |
CTACAGGCTAAAGCTGGGGC+TGG | 0.522254 | 4.1:-20517613 | MS.gene028531:intron |
ATTGGCACAGTGGAATTCAC+TGG | 0.525284 | 4.1:+20518261 | None:intergenic |
TACAAAACCTGTGATAAAAG+AGG | 0.525888 | 4.1:+20517967 | None:intergenic |
GATGAAGAACTGAAACCAAT+GGG | 0.526120 | 4.1:+20518933 | None:intergenic |
AATCAAGTTGACAATCGCAT+TGG | 0.528249 | 4.1:+20518290 | None:intergenic |
TACGATGTCGTCAACACCCC+TGG | 0.528822 | 4.1:-20518908 | MS.gene028531:CDS |
GAAGTTGATGTTCCAGTGGT+AGG | 0.529113 | 4.1:-20518015 | MS.gene028531:CDS |
AGCACGACCAAGACGAACCT+TGG | 0.532157 | 4.1:+20517268 | None:intergenic |
ATACCTCTCATACTCATTGA+GGG | 0.532183 | 4.1:+20517217 | None:intergenic |
TTTGCTAACTCATGCCTCCA+TGG | 0.532412 | 4.1:-20517453 | MS.gene028531:CDS |
AATACCTCTCATACTCATTG+AGG | 0.533233 | 4.1:+20517216 | None:intergenic |
CTAACATCAGCTGTGACACC+AGG | 0.537382 | 4.1:+20518890 | None:intergenic |
GCTGAGGTCTTCAAGAAAGC+TGG | 0.540699 | 4.1:-20518234 | MS.gene028531:CDS |
TCATACTACAGGCTAAAGCT+GGG | 0.547408 | 4.1:-20517618 | MS.gene028531:intron |
TATTTGGGTTTCTAGGTTCG+CGG | 0.547751 | 4.1:-20518474 | MS.gene028531:intron |
TGCACTCACAGGCATGGACT+TGG | 0.548590 | 4.1:-20518424 | MS.gene028531:CDS |
CAAGGAAACCTGGAATGACC+AGG | 0.549218 | 4.1:-20518380 | MS.gene028531:CDS |
TATTTGCCCTCACAACATCA+AGG | 0.553866 | 4.1:+20518175 | None:intergenic |
GTGAGTGCATTCTCAAGTTG+TGG | 0.555697 | 4.1:+20518438 | None:intergenic |
GTTGGCAGGAAGCATCCAGA+AGG | 0.557639 | 4.1:-20517080 | MS.gene028531:CDS |
CCAGTGGTAGGAGGTCATGC+AGG | 0.559555 | 4.1:-20518003 | MS.gene028531:CDS |
AGATGAAGAACTGAAACCAA+TGG | 0.559879 | 4.1:+20518932 | None:intergenic |
TATCTTAAATAAGTCGTCCC+TGG | 0.559911 | 4.1:+20518362 | None:intergenic |
TGAGAATGCACTCACAGGCA+TGG | 0.564594 | 4.1:-20518430 | MS.gene028531:CDS |
TGGTGGAACAGAAGTTGTTG+AGG | 0.567512 | 4.1:-20517799 | MS.gene028531:intron |
CCTGCATGACCTCCTACCAC+TGG | 0.567638 | 4.1:+20518003 | None:intergenic |
AAAGCGAAGAAAGAGTTGGC+AGG | 0.568245 | 4.1:-20517094 | MS.gene028531:CDS |
GATTCAAAGTAGCAGTATTG+GGG | 0.568602 | 4.1:-20519003 | MS.gene028531:CDS |
AATACTGCTACTTTGAATCC+AGG | 0.573479 | 4.1:+20519007 | None:intergenic |
GCTGTTGAAGATGAACCCAT+TGG | 0.574983 | 4.1:-20518948 | MS.gene028531:CDS |
CAACTTGAGAATGCACTCAC+AGG | 0.578403 | 4.1:-20518435 | MS.gene028531:CDS |
TACAGCCCTTGATGTTGTGA+GGG | 0.583709 | 4.1:-20518181 | MS.gene028531:CDS |
CACAGCTGATGTTAGTCACA+TGG | 0.583816 | 4.1:-20518882 | MS.gene028531:CDS |
GACTTGGTAGTTATACCTGC+TGG | 0.591481 | 4.1:-20518408 | MS.gene028531:CDS |
ACTTCCTTTCTTTGCAACCA+AGG | 0.593363 | 4.1:-20517285 | MS.gene028531:CDS |
AGAGCTAACTGCAGAGCCAA+AGG | 0.594985 | 4.1:-20519037 | MS.gene028531:CDS |
ATAGAAATGGAAGCACATGC+AGG | 0.595064 | 4.1:-20519541 | None:intergenic |
TTACAGCCCTTGATGTTGTG+AGG | 0.600332 | 4.1:-20518182 | MS.gene028531:CDS |
TTATACCTGCTGGTGTGCCA+AGG | 0.602158 | 4.1:-20518398 | MS.gene028531:CDS |
CTTCTCCTTTCAAGCCATGG+AGG | 0.603278 | 4.1:+20517439 | None:intergenic |
ACAAATCGCATTCAAAATGG+TGG | 0.604111 | 4.1:-20517816 | MS.gene028531:CDS |
TCACATGGACACCGGTGCTG+TGG | 0.605555 | 4.1:-20518867 | MS.gene028531:intron |
CTAACTGCAGAGCCAAAGGT+GGG | 0.608809 | 4.1:-20519033 | MS.gene028531:CDS |
AGATAAATGCTGGAATTGTG+AGG | 0.611243 | 4.1:-20518344 | MS.gene028531:CDS |
GAAAGGAGAAGCTGGAGTGG+TGG | 0.612474 | 4.1:-20517427 | MS.gene028531:CDS |
GCTAACTGCAGAGCCAAAGG+TGG | 0.616454 | 4.1:-20519034 | MS.gene028531:CDS |
GTTGATGTTCCAGTGGTAGG+AGG | 0.622398 | 4.1:-20518012 | MS.gene028531:CDS |
GTCCCCTCAATGAGTATGAG+AGG | 0.626340 | 4.1:-20517220 | MS.gene028531:intron |
CACATGCAGGAGCCAACCAA+AGG | 0.627115 | 4.1:-20519528 | MS.gene028531:CDS |
TACCTCTCATACTCATTGAG+GGG | 0.629921 | 4.1:+20517218 | None:intergenic |
TAACATCAGCTGTGACACCA+GGG | 0.641600 | 4.1:+20518891 | None:intergenic |
CTCAGCAGCAATTGGCACAG+TGG | 0.644156 | 4.1:+20518251 | None:intergenic |
TTGGCAGGAAGCATCCAGAA+GGG | 0.644240 | 4.1:-20517079 | MS.gene028531:CDS |
ATTTGCCCTCACAACATCAA+GGG | 0.645316 | 4.1:+20518176 | None:intergenic |
CTTGAAAGGAGAAGCTGGAG+TGG | 0.646717 | 4.1:-20517430 | MS.gene028531:CDS |
AAGAGAAGTTGATGTTCCAG+TGG | 0.657736 | 4.1:-20518019 | MS.gene028531:CDS |
TACTCATTGAGGGGACCCAG+TGG | 0.658052 | 4.1:+20517227 | None:intergenic |
GATGTTAGTCACATGGACAC+CGG | 0.662524 | 4.1:-20518875 | MS.gene028531:CDS |
TAACTGCAGAGCCAAAGGTG+GGG | 0.668015 | 4.1:-20519032 | MS.gene028531:CDS |
ATTGTGAGGACTCTTTGTGA+AGG | 0.672821 | 4.1:-20518330 | MS.gene028531:CDS |
GCAGAAGAAATATTTCCACT+GGG | 0.677199 | 4.1:-20517242 | MS.gene028531:CDS |
TCAAGTTGACAATCGCATTG+GGG | 0.678396 | 4.1:+20518292 | None:intergenic |
AAGGAAACCTGGAATGACCA+GGG | 0.681756 | 4.1:-20518379 | MS.gene028531:CDS |
AACATCAGCTGTGACACCAG+GGG | 0.685298 | 4.1:+20518892 | None:intergenic |
ATTCAAAGTAGCAGTATTGG+GGG | 0.691272 | 4.1:-20519002 | MS.gene028531:CDS |
TCTGCAGTGAAGCTACTAGG+AGG | 0.696329 | 4.1:+20517855 | None:intergenic |
CATACTACAGGCTAAAGCTG+GGG | 0.698547 | 4.1:-20517617 | MS.gene028531:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTTATCAATCAATAATATT+CGG | + | chr4.1:20517283-20517302 | None:intergenic | 15.0% |
!! | ATAAATATTATTCATACTAC+AGG | - | chr4.1:20518963-20518982 | MS.gene028531:CDS | 15.0% |
!! | CAAACTATTAATTTCTTTAT+TGG | - | chr4.1:20519411-20519430 | MS.gene028531:intron | 15.0% |
!! | TTAATAGTTTGATAAACTAT+TGG | + | chr4.1:20519402-20519421 | None:intergenic | 15.0% |
!!! | TCTTTACTTCTAATTTTATT+TGG | - | chr4.1:20518915-20518934 | MS.gene028531:CDS | 15.0% |
!! | TGCCTATAAAAAAACAATAT+TGG | + | chr4.1:20517235-20517254 | None:intergenic | 20.0% |
!! | TTTGATGTTTAATACTTAAC+AGG | - | chr4.1:20519463-20519482 | MS.gene028531:intron | 20.0% |
!!! | CTGTAAATTTTGATATGAAA+GGG | + | chr4.1:20519260-20519279 | None:intergenic | 20.0% |
!!! | GATGTCATAAATTTTAAGTA+AGG | + | chr4.1:20518668-20518687 | None:intergenic | 20.0% |
!!! | GTCCAATATTGTTTTTTTAT+AGG | - | chr4.1:20517230-20517249 | MS.gene028531:CDS | 20.0% |
!!! | TTATTTTATTTTTCTCTTGC+AGG | - | chr4.1:20518528-20518547 | MS.gene028531:intron | 20.0% |
! | AAAAAAACCTGCAAATTTGA+AGG | + | chr4.1:20517117-20517136 | None:intergenic | 25.0% |
! | AAAAAACCTGCAAATTTGAA+GGG | + | chr4.1:20517116-20517135 | None:intergenic | 25.0% |
! | CACATCCTTAAAATAAATAG+TGG | + | chr4.1:20518047-20518066 | None:intergenic | 25.0% |
! | GTTTAATACTTAACAGGATT+GGG | - | chr4.1:20519469-20519488 | MS.gene028531:intron | 25.0% |
! | TGTTTAATACTTAACAGGAT+TGG | - | chr4.1:20519468-20519487 | MS.gene028531:intron | 25.0% |
! | TTAAAAACCAAGTTTGAAGA+AGG | + | chr4.1:20518709-20518728 | None:intergenic | 25.0% |
! | TTGATTGATAAGTGTGTATA+AGG | - | chr4.1:20517290-20517309 | MS.gene028531:CDS | 25.0% |
! | TTTGGAAACTTGTAAATTCA+CGG | + | chr4.1:20517944-20517963 | None:intergenic | 25.0% |
!! | GACTTATTTAAGATAAATGC+TGG | - | chr4.1:20518238-20518257 | MS.gene028531:CDS | 25.0% |
!!! | AGGTTTTTTTTTTCTTCCTT+TGG | - | chr4.1:20517127-20517146 | MS.gene028531:intron | 25.0% |
!!! | GCTGTAAATTTTGATATGAA+AGG | + | chr4.1:20519261-20519280 | None:intergenic | 25.0% |
!!! | TCAAGCCACTATTTATTTTA+AGG | - | chr4.1:20518039-20518058 | MS.gene028531:CDS | 25.0% |
!!! | TCTTCAAACTTGGTTTTTAA+AGG | - | chr4.1:20518709-20518728 | MS.gene028531:intron | 25.0% |
!!! | TTTTATCACAGGTTTTGTAA+AGG | - | chr4.1:20518629-20518648 | MS.gene028531:intron | 25.0% |
ACAAATTTCAGCTTCAGTAA+TGG | - | chr4.1:20517908-20517927 | MS.gene028531:intron | 30.0% | |
ACTATTGTATGAGTATATGC+TGG | - | chr4.1:20518494-20518513 | MS.gene028531:intron | 30.0% | |
CGAATGATGCAAGTATATTT+GGG | - | chr4.1:20518103-20518122 | MS.gene028531:intron | 30.0% | |
CTAAACATGATTGATTGTGT+AGG | - | chr4.1:20519099-20519118 | MS.gene028531:intron | 30.0% | |
GCATATACTCATACAATAGT+AGG | + | chr4.1:20518494-20518513 | None:intergenic | 30.0% | |
GCTAGAAAGTTCAATGATAT+TGG | - | chr4.1:20517168-20517187 | MS.gene028531:intron | 30.0% | |
TACAAAACCTGTGATAAAAG+AGG | + | chr4.1:20518628-20518647 | None:intergenic | 30.0% | |
TCGAATGATGCAAGTATATT+TGG | - | chr4.1:20518102-20518121 | MS.gene028531:intron | 30.0% | |
TTATACTCCAATCGCATATT+AGG | + | chr4.1:20518848-20518867 | None:intergenic | 30.0% | |
TTATTGGAAGCAACAAACAA+AGG | - | chr4.1:20519427-20519446 | MS.gene028531:intron | 30.0% | |
TTTATCACCTAATATGCGAT+TGG | - | chr4.1:20518838-20518857 | MS.gene028531:intron | 30.0% | |
! | AAGATAAAGAGCATGCATAA+GGG | + | chr4.1:20519237-20519256 | None:intergenic | 30.0% |
! | AATATTGCCTCTTTTATCAC+AGG | - | chr4.1:20518618-20518637 | MS.gene028531:intron | 30.0% |
! | GTAACAGTTGTGTTTTTCTT+TGG | - | chr4.1:20517999-20518018 | MS.gene028531:CDS | 30.0% |
!! | AAGAAGGATAAGCTTGTTAA+CGG | - | chr4.1:20518866-20518885 | MS.gene028531:intron | 30.0% |
AAGAAAAATTACCACAGCAC+CGG | + | chr4.1:20517739-20517758 | None:intergenic | 35.0% | |
AATACCTCTCATACTCATTG+AGG | + | chr4.1:20519379-20519398 | None:intergenic | 35.0% | |
AATACTTAACAGGATTGGGT+TGG | - | chr4.1:20519473-20519492 | MS.gene028531:intron | 35.0% | |
AATGCGATTTGTCAGGTATT+CGG | + | chr4.1:20518768-20518787 | None:intergenic | 35.0% | |
AATTGGTATCAATTGTGTCC+CGG | - | chr4.1:20519064-20519083 | MS.gene028531:CDS | 35.0% | |
ACAAATCGCATTCAAAATGG+TGG | - | chr4.1:20518776-20518795 | MS.gene028531:intron | 35.0% | |
AGATAAATGCTGGAATTGTG+AGG | - | chr4.1:20518248-20518267 | MS.gene028531:CDS | 35.0% | |
AGATGAAGAACTGAAACCAA+TGG | + | chr4.1:20517663-20517682 | None:intergenic | 35.0% | |
AGCAGAAGAAATATTTCCAC+TGG | - | chr4.1:20519349-20519368 | MS.gene028531:intron | 35.0% | |
AGCCGATAGGGTATAAATTA+GGG | - | chr4.1:20517374-20517393 | MS.gene028531:intron | 35.0% | |
ATACCTCTCATACTCATTGA+GGG | + | chr4.1:20519378-20519397 | None:intergenic | 35.0% | |
ATTCAATTACGAGAGAGAAG+AGG | + | chr4.1:20518465-20518484 | None:intergenic | 35.0% | |
CACTAAACCTTCTTCAAACT+TGG | - | chr4.1:20518699-20518718 | MS.gene028531:intron | 35.0% | |
CATCTTCAACAGCAAAGAAA+GGG | + | chr4.1:20517637-20517656 | None:intergenic | 35.0% | |
CGATGTCACTGCTTAAATTT+CGG | - | chr4.1:20517435-20517454 | MS.gene028531:CDS | 35.0% | |
CTGACAAATCGCATTCAAAA+TGG | - | chr4.1:20518773-20518792 | MS.gene028531:intron | 35.0% | |
GATGAAGAACTGAAACCAAT+GGG | + | chr4.1:20517662-20517681 | None:intergenic | 35.0% | |
GATTCAAAGTAGCAGTATTG+GGG | - | chr4.1:20517589-20517608 | MS.gene028531:intron | 35.0% | |
GCAGAAGAAATATTTCCACT+GGG | - | chr4.1:20519350-20519369 | MS.gene028531:intron | 35.0% | |
GGATTCAAAGTAGCAGTATT+GGG | - | chr4.1:20517588-20517607 | MS.gene028531:intron | 35.0% | |
GGGAAAAAAGGACTTGAAAT+TGG | + | chr4.1:20519217-20519236 | None:intergenic | 35.0% | |
TAATGAATTCTACTCCCTTC+TGG | + | chr4.1:20519530-20519549 | None:intergenic | 35.0% | |
TATCTTAAATAAGTCGTCCC+TGG | + | chr4.1:20518233-20518252 | None:intergenic | 35.0% | |
TATGCGATTGGAGTATAAGA+AGG | - | chr4.1:20518850-20518869 | MS.gene028531:intron | 35.0% | |
TCATCTTCAACAGCAAAGAA+AGG | + | chr4.1:20517638-20517657 | None:intergenic | 35.0% | |
TGGATTCAAAGTAGCAGTAT+TGG | - | chr4.1:20517587-20517606 | MS.gene028531:intron | 35.0% | |
TTAAATTTCGGCCCAAATCA+CGG | - | chr4.1:20517447-20517466 | MS.gene028531:CDS | 35.0% | |
! | ATTCAAAGTAGCAGTATTGG+GGG | - | chr4.1:20517590-20517609 | MS.gene028531:intron | 35.0% |
! | CATTTTGAATGCGATTTGTC+AGG | + | chr4.1:20518775-20518794 | None:intergenic | 35.0% |
! | GAAGATAAAGAGCATGCATA+AGG | + | chr4.1:20519238-20519257 | None:intergenic | 35.0% |
! | GCAAGTATATTTGGGTTTCT+AGG | - | chr4.1:20518111-20518130 | MS.gene028531:intron | 35.0% |
! | TATGATCCAAAGCGACTTTT+AGG | - | chr4.1:20518385-20518404 | MS.gene028531:CDS | 35.0% |
! | TATGTCTGTTTTGTGATGAC+AGG | - | chr4.1:20517509-20517528 | MS.gene028531:intron | 35.0% |
!! | AATACTGCTACTTTGAATCC+AGG | + | chr4.1:20517588-20517607 | None:intergenic | 35.0% |
!! | AATCAAGTTGACAATCGCAT+TGG | + | chr4.1:20518305-20518324 | None:intergenic | 35.0% |
!! | ATCAAGTTGACAATCGCATT+GGG | + | chr4.1:20518304-20518323 | None:intergenic | 35.0% |
!! | TGTTTTTCTTTGGTTCAACC+TGG | - | chr4.1:20518009-20518028 | MS.gene028531:CDS | 35.0% |
AAGTCACGTTCAAAGTGCAT+AGG | + | chr4.1:20517878-20517897 | None:intergenic | 40.0% | |
AATTTCCACGCACACTCAAT+TGG | - | chr4.1:20519047-20519066 | MS.gene028531:CDS | 40.0% | |
ACTGGAACATCAACTTCTCT+TGG | + | chr4.1:20518574-20518593 | None:intergenic | 40.0% | |
ACTTCCTTTCTTTGCAACCA+AGG | - | chr4.1:20519307-20519326 | MS.gene028531:intron | 40.0% | |
ATATATTTGCAGCCGCAACA+CGG | + | chr4.1:20517400-20517419 | None:intergenic | 40.0% | |
ATTGTGAGGACTCTTTGTGA+AGG | - | chr4.1:20518262-20518281 | MS.gene028531:CDS | 40.0% | |
ATTTGCCCTCACAACATCAA+GGG | + | chr4.1:20518419-20518438 | None:intergenic | 40.0% | |
CAGAGATTCTTGCAATCCTT+TGG | + | chr4.1:20517083-20517102 | None:intergenic | 40.0% | |
CAGCCGATAGGGTATAAATT+AGG | - | chr4.1:20517373-20517392 | MS.gene028531:intron | 40.0% | |
CGTTAGCTGAATGAAACCAA+AGG | + | chr4.1:20517146-20517165 | None:intergenic | 40.0% | |
GAACATGAGAATTGTCAACG+CGG | + | chr4.1:20517856-20517875 | None:intergenic | 40.0% | |
GAGCATGCATAAGGGAAAAA+AGG | + | chr4.1:20519229-20519248 | None:intergenic | 40.0% | |
GATTCTTGCAATCCTTTGGT+TGG | + | chr4.1:20517079-20517098 | None:intergenic | 40.0% | |
GGAAAAAGCGAAGAAAGAGT+TGG | - | chr4.1:20519494-20519513 | MS.gene028531:CDS | 40.0% | |
GGCCCTAATTTATACCCTAT+CGG | + | chr4.1:20517379-20517398 | None:intergenic | 40.0% | |
GTAACTCCTAAAAGTCGCTT+TGG | + | chr4.1:20518394-20518413 | None:intergenic | 40.0% | |
TACCTCTCATACTCATTGAG+GGG | + | chr4.1:20519377-20519396 | None:intergenic | 40.0% | |
TATAAATTAGGGCCGTGTTG+CGG | - | chr4.1:20517385-20517404 | MS.gene028531:intron | 40.0% | |
TATTTGCCCTCACAACATCA+AGG | + | chr4.1:20518420-20518439 | None:intergenic | 40.0% | |
TCATACTACAGGCTAAAGCT+GGG | - | chr4.1:20518974-20518993 | MS.gene028531:CDS | 40.0% | |
TCTTCACCCTTCAAATTTGC+AGG | - | chr4.1:20517107-20517126 | MS.gene028531:CDS | 40.0% | |
TGTTTAGTTAGTCCCTCTAC+CGG | + | chr4.1:20519086-20519105 | None:intergenic | 40.0% | |
TTCATACTACAGGCTAAAGC+TGG | - | chr4.1:20518973-20518992 | MS.gene028531:CDS | 40.0% | |
TTTCAGCTTCAGTAATGGCA+CGG | - | chr4.1:20517913-20517932 | MS.gene028531:intron | 40.0% | |
! | TATTTGGGTTTCTAGGTTCG+CGG | - | chr4.1:20518118-20518137 | MS.gene028531:intron | 40.0% |
! | TATTTTTCTCTTGCAGGCAG+AGG | - | chr4.1:20518534-20518553 | MS.gene028531:intron | 40.0% |
! | TCTGTTTTGTGATGACAGGA+AGG | - | chr4.1:20517513-20517532 | MS.gene028531:intron | 40.0% |
! | TGGTTCTGCAACACTATCAA+TGG | - | chr4.1:20518999-20519018 | MS.gene028531:CDS | 40.0% |
! | TGTGAGGGCAAATACTTTTG+TGG | - | chr4.1:20518426-20518445 | MS.gene028531:CDS | 40.0% |
!! | AAGAGAAGTTGATGTTCCAG+TGG | - | chr4.1:20518573-20518592 | MS.gene028531:intron | 40.0% |
!! | GTGTGCTTATGTTGATTCTC+AGG | - | chr4.1:20519189-20519208 | MS.gene028531:intron | 40.0% |
!! | TCAAGTTGACAATCGCATTG+GGG | + | chr4.1:20518303-20518322 | None:intergenic | 40.0% |
AAAGCGAAGAAAGAGTTGGC+AGG | - | chr4.1:20519498-20519517 | MS.gene028531:CDS | 45.0% | |
AAATGTCTGCCACCGTGATT+TGG | + | chr4.1:20517462-20517481 | None:intergenic | 45.0% | |
AACAGTCAAATGCAGCCGAT+AGG | - | chr4.1:20517361-20517380 | MS.gene028531:intron | 45.0% | |
AAGGAAACCTGGAATGACCA+GGG | - | chr4.1:20518213-20518232 | MS.gene028531:CDS | 45.0% | |
AATGTCTGCCACCGTGATTT+GGG | + | chr4.1:20517461-20517480 | None:intergenic | 45.0% | |
ACAGTCAAATGCAGCCGATA+GGG | - | chr4.1:20517362-20517381 | MS.gene028531:intron | 45.0% | |
AGCAGTGACATCGAAGTTCT+TGG | + | chr4.1:20517428-20517447 | None:intergenic | 45.0% | |
AGTTTCCAAACACGCAGTAG+TGG | - | chr4.1:20517954-20517973 | MS.gene028531:intron | 45.0% | |
ATCAATTGTGTCCCGGTAGA+GGG | - | chr4.1:20519071-20519090 | MS.gene028531:intron | 45.0% | |
ATTGGCACAGTGGAATTCAC+TGG | + | chr4.1:20518334-20518353 | None:intergenic | 45.0% | |
CAACTTGAGAATGCACTCAC+AGG | - | chr4.1:20518157-20518176 | MS.gene028531:intron | 45.0% | |
CACAGCTGATGTTAGTCACA+TGG | - | chr4.1:20517710-20517729 | MS.gene028531:intron | 45.0% | |
CATACTACAGGCTAAAGCTG+GGG | - | chr4.1:20518975-20518994 | MS.gene028531:CDS | 45.0% | |
CGAACCTTGGTTGCAAAGAA+AGG | + | chr4.1:20519314-20519333 | None:intergenic | 45.0% | |
CGCGTGTCTTCAATAGGTTA+CGG | - | chr4.1:20519283-20519302 | MS.gene028531:intron | 45.0% | |
GATGTTAGTCACATGGACAC+CGG | - | chr4.1:20517717-20517736 | MS.gene028531:intron | 45.0% | |
GCTGTTGAAGATGAACCCAT+TGG | - | chr4.1:20517644-20517663 | MS.gene028531:intron | 45.0% | |
GTTTAGTTAGTCCCTCTACC+GGG | + | chr4.1:20519085-20519104 | None:intergenic | 45.0% | |
TAACATCAGCTGTGACACCA+GGG | + | chr4.1:20517704-20517723 | None:intergenic | 45.0% | |
TACAGCCCTTGATGTTGTGA+GGG | - | chr4.1:20518411-20518430 | MS.gene028531:CDS | 45.0% | |
TAGTGGCTTGAACAGAATCC+AGG | + | chr4.1:20518030-20518049 | None:intergenic | 45.0% | |
TATCAATTGTGTCCCGGTAG+AGG | - | chr4.1:20519070-20519089 | MS.gene028531:intron | 45.0% | |
TCTTCTGCAGTGAAGCTACT+AGG | + | chr4.1:20518743-20518762 | None:intergenic | 45.0% | |
TGATACCAATTGAGTGTGCG+TGG | + | chr4.1:20519055-20519074 | None:intergenic | 45.0% | |
TGGTGGAACAGAAGTTGTTG+AGG | - | chr4.1:20518793-20518812 | MS.gene028531:intron | 45.0% | |
TTACAGCCCTTGATGTTGTG+AGG | - | chr4.1:20518410-20518429 | MS.gene028531:CDS | 45.0% | |
TTGAAGACCTCAGCAGCAAT+TGG | + | chr4.1:20518352-20518371 | None:intergenic | 45.0% | |
TTTGCAACCAAGGTTCGTCT+TGG | - | chr4.1:20519317-20519336 | MS.gene028531:intron | 45.0% | |
TTTGCTAACTCATGCCTCCA+TGG | - | chr4.1:20519139-20519158 | MS.gene028531:intron | 45.0% | |
! | GACTTGGTAGTTATACCTGC+TGG | - | chr4.1:20518184-20518203 | MS.gene028531:CDS | 45.0% |
! | GTGAGTGCATTCTCAAGTTG+TGG | + | chr4.1:20518157-20518176 | None:intergenic | 45.0% |
! | GTTTTGTGATGACAGGAAGG+AGG | - | chr4.1:20517516-20517535 | MS.gene028531:intron | 45.0% |
! | TTCTAGGTTCGCGGCTTTTT+GGG | - | chr4.1:20518127-20518146 | MS.gene028531:intron | 45.0% |
! | TTTCTAGGTTCGCGGCTTTT+TGG | - | chr4.1:20518126-20518145 | MS.gene028531:intron | 45.0% |
!! | GAAGTTGATGTTCCAGTGGT+AGG | - | chr4.1:20518577-20518596 | MS.gene028531:intron | 45.0% |
!! | AAAAAAATTTAAATCATATT+TGG | - | chr4.1:20517823-20517842 | MS.gene028531:CDS | 5.0% |
AACATCAGCTGTGACACCAG+GGG | + | chr4.1:20517703-20517722 | None:intergenic | 50.0% | |
AATCGCATTGGGGCAACACT+TGG | + | chr4.1:20518293-20518312 | None:intergenic | 50.0% | |
AATTTCGGCCCAAATCACGG+TGG | - | chr4.1:20517450-20517469 | MS.gene028531:CDS | 50.0% | |
AGAGCTAACTGCAGAGCCAA+AGG | - | chr4.1:20517555-20517574 | MS.gene028531:intron | 50.0% | |
CAAGGAAACCTGGAATGACC+AGG | - | chr4.1:20518212-20518231 | MS.gene028531:CDS | 50.0% | |
CAGCTTCTCCTTTCAAGCCA+TGG | + | chr4.1:20519159-20519178 | None:intergenic | 50.0% | |
CATGGCTTGAAAGGAGAAGC+TGG | - | chr4.1:20519157-20519176 | MS.gene028531:intron | 50.0% | |
CTAACATCAGCTGTGACACC+AGG | + | chr4.1:20517705-20517724 | None:intergenic | 50.0% | |
CTAACTGCAGAGCCAAAGGT+GGG | - | chr4.1:20517559-20517578 | MS.gene028531:intron | 50.0% | |
CTGGTCATTCCAGGTTTCCT+TGG | + | chr4.1:20518214-20518233 | None:intergenic | 50.0% | |
CTTCTCCTTTCAAGCCATGG+AGG | + | chr4.1:20519156-20519175 | None:intergenic | 50.0% | |
CTTGAAAGGAGAAGCTGGAG+TGG | - | chr4.1:20519162-20519181 | MS.gene028531:intron | 50.0% | |
GCTGAGGTCTTCAAGAAAGC+TGG | - | chr4.1:20518358-20518377 | MS.gene028531:CDS | 50.0% | |
GTCCCCTCAATGAGTATGAG+AGG | - | chr4.1:20519372-20519391 | MS.gene028531:intron | 50.0% | |
GTTGATGTTCCAGTGGTAGG+AGG | - | chr4.1:20518580-20518599 | MS.gene028531:intron | 50.0% | |
TAACTGCAGAGCCAAAGGTG+GGG | - | chr4.1:20517560-20517579 | MS.gene028531:intron | 50.0% | |
TCATGCCTCCATGGCTTGAA+AGG | - | chr4.1:20519148-20519167 | MS.gene028531:intron | 50.0% | |
TCTGCAGTGAAGCTACTAGG+AGG | + | chr4.1:20518740-20518759 | None:intergenic | 50.0% | |
TGAGAATGCACTCACAGGCA+TGG | - | chr4.1:20518162-20518181 | MS.gene028531:intron | 50.0% | |
TTATACCTGCTGGTGTGCCA+AGG | - | chr4.1:20518194-20518213 | MS.gene028531:CDS | 50.0% | |
! | TCTAGGTTCGCGGCTTTTTG+GGG | - | chr4.1:20518128-20518147 | MS.gene028531:intron | 50.0% |
!! | TTGGCAGGAAGCATCCAGAA+GGG | - | chr4.1:20519513-20519532 | MS.gene028531:CDS | 50.0% |
AAGGTTCGTCTTGGTCGTGC+TGG | - | chr4.1:20519326-20519345 | MS.gene028531:intron | 55.0% | |
AAGTCGTCCCTGGTCATTCC+AGG | + | chr4.1:20518223-20518242 | None:intergenic | 55.0% | |
AGCACGACCAAGACGAACCT+TGG | + | chr4.1:20519327-20519346 | None:intergenic | 55.0% | |
CACAGCCACTACTGCGTGTT+TGG | + | chr4.1:20517962-20517981 | None:intergenic | 55.0% | |
CACATGCAGGAGCCAACCAA+AGG | - | chr4.1:20517064-20517083 | MS.gene028531:CDS | 55.0% | |
CACTGTGCCAATTGCTGCTG+AGG | - | chr4.1:20518342-20518361 | MS.gene028531:CDS | 55.0% | |
CAGCAGCGCGTGTCTTCAAT+AGG | - | chr4.1:20519277-20519296 | MS.gene028531:intron | 55.0% | |
CTCAGCAGCAATTGGCACAG+TGG | + | chr4.1:20518344-20518363 | None:intergenic | 55.0% | |
GAAAGGAGAAGCTGGAGTGG+TGG | - | chr4.1:20519165-20519184 | MS.gene028531:intron | 55.0% | |
GCTAACTGCAGAGCCAAAGG+TGG | - | chr4.1:20517558-20517577 | MS.gene028531:intron | 55.0% | |
TACGATGTCGTCAACACCCC+TGG | - | chr4.1:20517684-20517703 | MS.gene028531:intron | 55.0% | |
TACTCATTGAGGGGACCCAG+TGG | + | chr4.1:20519368-20519387 | None:intergenic | 55.0% | |
TGCACTCACAGGCATGGACT+TGG | - | chr4.1:20518168-20518187 | MS.gene028531:CDS | 55.0% | |
!! | CTCTTGCAGGCAGAGGTACT+TGG | - | chr4.1:20518541-20518560 | MS.gene028531:intron | 55.0% |
!! | GTTGGCAGGAAGCATCCAGA+AGG | - | chr4.1:20519512-20519531 | MS.gene028531:CDS | 55.0% |
CCAGTGGTAGGAGGTCATGC+AGG | - | chr4.1:20518589-20518608 | MS.gene028531:intron | 60.0% | |
CCTGCATGACCTCCTACCAC+TGG | + | chr4.1:20518592-20518611 | None:intergenic | 60.0% | |
CTACAGGCTAAAGCTGGGGC+TGG | - | chr4.1:20518979-20518998 | MS.gene028531:CDS | 60.0% | |
GAATCCAGGTGCCCCACCTT+TGG | + | chr4.1:20517574-20517593 | None:intergenic | 60.0% | |
GCTGGTGTGCCAAGGAAACC+TGG | - | chr4.1:20518202-20518221 | MS.gene028531:CDS | 60.0% | |
GGTTTCCTTGGCACACCAGC+AGG | + | chr4.1:20518202-20518221 | None:intergenic | 60.0% | |
TTGGGGGCTGCTGGTGGAAT+TGG | - | chr4.1:20517606-20517625 | MS.gene028531:CDS | 60.0% | |
! | GTAGCAGTATTGGGGGCTGC+TGG | - | chr4.1:20517597-20517616 | MS.gene028531:CDS | 60.0% |
! | TCACATGGACACCGGTGCTG+TGG | - | chr4.1:20517725-20517744 | MS.gene028531:intron | 60.0% |
! | AGAGCCAAAGGTGGGGCACC+TGG | - | chr4.1:20517567-20517586 | MS.gene028531:intron | 65.0% |
! | GCAGTATTGGGGGCTGCTGG+TGG | - | chr4.1:20517600-20517619 | MS.gene028531:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 20517057 | 20519557 | 20517057 | ID=MS.gene028531 |
chr4.1 | mRNA | 20517057 | 20519557 | 20517057 | ID=MS.gene028531.t1;Parent=MS.gene028531 |
chr4.1 | exon | 20519486 | 20519557 | 20519486 | ID=MS.gene028531.t1.exon1;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20519486 | 20519557 | 20519486 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
chr4.1 | exon | 20518868 | 20519083 | 20518868 | ID=MS.gene028531.t1.exon2;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20518868 | 20519083 | 20518868 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
chr4.1 | exon | 20518167 | 20518481 | 20518167 | ID=MS.gene028531.t1.exon3;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20518167 | 20518481 | 20518167 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
chr4.1 | exon | 20517975 | 20518064 | 20517975 | ID=MS.gene028531.t1.exon4;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20517975 | 20518064 | 20517975 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
chr4.1 | exon | 20517800 | 20517883 | 20517800 | ID=MS.gene028531.t1.exon5;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20517800 | 20517883 | 20517800 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
chr4.1 | exon | 20517594 | 20517629 | 20517594 | ID=MS.gene028531.t1.exon6;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20517594 | 20517629 | 20517594 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
chr4.1 | exon | 20517404 | 20517493 | 20517404 | ID=MS.gene028531.t1.exon7;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20517404 | 20517493 | 20517404 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
chr4.1 | exon | 20517221 | 20517315 | 20517221 | ID=MS.gene028531.t1.exon8;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20517221 | 20517315 | 20517221 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
chr4.1 | exon | 20517057 | 20517129 | 20517057 | ID=MS.gene028531.t1.exon9;Parent=MS.gene028531.t1 |
chr4.1 | CDS | 20517057 | 20517129 | 20517057 | ID=cds.MS.gene028531.t1;Parent=MS.gene028531.t1 |
Gene Sequence |
Protein sequence |