AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053632


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053632.t1 MTR_4g092690 98.876 356 4 0 1 356 1 356 0.0 713
MS.gene053632.t1 MTR_5g014710 79.888 358 70 1 1 356 1 358 0.0 590
MS.gene053632.t1 MTR_8g463760 64.744 312 109 1 43 353 29 340 2.76e-140 402
MS.gene053632.t1 MTR_8g463760 70.526 190 56 0 43 232 29 218 1.50e-88 267
MS.gene053632.t1 MTR_2g021700 91.667 60 5 0 202 261 43 102 3.11e-30 113
MS.gene053632.t1 MTR_2g045010 91.667 60 5 0 202 261 43 102 3.11e-30 113
MS.gene053632.t1 MTR_4g033285 94.444 54 3 0 202 255 43 96 1.42e-27 104
MS.gene053632.t1 MTR_4g121520 63.793 58 6 1 202 259 3 45 1.40e-12 68.9
MS.gene053632.t1 MTR_5g012390 24.125 257 162 10 46 283 39 281 1.15e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053632.t1 AT5G09660 85.955 356 48 1 1 356 1 354 0.0 602
MS.gene053632.t1 AT5G09660 85.674 356 48 2 1 356 1 353 0.0 595
MS.gene053632.t1 AT2G22780 80.342 351 67 1 8 356 4 354 0.0 578
MS.gene053632.t1 AT5G09660 87.651 332 41 0 25 356 2 333 0.0 577
MS.gene053632.t1 AT5G09660 85.762 302 41 1 1 302 1 300 0.0 507
MS.gene053632.t1 AT5G09660 87.770 278 34 0 25 302 2 279 2.71e-172 483
MS.gene053632.t1 AT1G53240 64.873 316 111 0 38 353 23 338 6.14e-146 416
MS.gene053632.t1 AT3G15020 65.595 311 107 0 43 353 28 338 7.42e-145 413
MS.gene053632.t1 AT3G47520 63.226 310 112 1 44 351 82 391 1.10e-136 395
MS.gene053632.t1 AT3G15020 67.153 274 90 0 43 316 28 301 1.07e-128 371
MS.gene053632.t1 AT4G17260 27.174 184 115 6 112 283 108 284 8.12e-11 63.2

Find 103 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGAATTCTACTCCCTTC+TGG 0.272096 4.4:+21738710 None:intergenic
TCTTCACCCTTCAAATTTCC+AGG 0.294139 4.4:-21741129 MS.gene053632:intron
GAATCCAGGTGCCCCACCTT+TGG 0.330579 4.4:+21740665 None:intergenic
GGATTCAAAGTAGCAGTATT+GGG 0.336673 4.4:-21740648 MS.gene053632:CDS
CTGGTCATTCCAGGTTTCCT+TGG 0.341674 4.4:+21740021 None:intergenic
CTGACAAATCGCATTCAAAA+TGG 0.343591 4.4:-21739464 MS.gene053632:CDS
CAGAGATTCTTGCAATCCTT+TGG 0.365549 4.4:+21741156 None:intergenic
AATGCGATTTGTCAGGTATT+CGG 0.372408 4.4:+21739472 None:intergenic
AAGTCGTCCCTGGTCATTCC+AGG 0.386910 4.4:+21740012 None:intergenic
ATCAAGTTGACAATCGCATT+GGG 0.397138 4.4:+21739931 None:intergenic
TCTTCTTCAGTGAAGCTACT+AGG 0.412985 4.4:+21739497 None:intergenic
TTCATACTACAGGCTAAAGC+TGG 0.423720 4.4:-21739264 MS.gene053632:intron
TTGAAGACCTCAGCAGCAAT+TGG 0.432472 4.4:+21739883 None:intergenic
GATTCTTGCAATCCTTTGGT+TGG 0.437303 4.4:+21741160 None:intergenic
GTGTGCTTATGTTGATTCTC+AGG 0.445825 4.4:-21739048 MS.gene053632:intron
ACTGGAACATCAACTTCTCT+TGG 0.450403 4.4:+21739666 None:intergenic
GACTTATTTAAGATAAATGC+TGG 0.454140 4.4:-21739994 MS.gene053632:CDS
AGAGCCAAAGGTGGGGCACC+TGG 0.462007 4.4:-21740669 MS.gene053632:CDS
TGGATTCAAAGTAGCAGTAT+TGG 0.462278 4.4:-21740649 MS.gene053632:CDS
CACTGTGCCAATTGCTGCTG+AGG 0.465597 4.4:-21739890 MS.gene053632:CDS
GCTGGTGTGCCAAGGAAACC+TGG 0.468289 4.4:-21740030 MS.gene053632:CDS
GTAACTCCTAAAAGTCGCTT+TGG 0.469912 4.4:+21739841 None:intergenic
CTCTTGCAGGCAGAGGTACT+CGG 0.472355 4.4:-21739696 MS.gene053632:intron
CAGCTTCTCCTTTCAAGCCA+TGG 0.480053 4.4:+21739081 None:intergenic
TCATGCCTCCATGGCTTGAA+AGG 0.483570 4.4:-21739089 MS.gene053632:CDS
CGAACCTTGGTTGCAAAGAA+AGG 0.486614 4.4:+21738926 None:intergenic
CATGGCTTGAAAGGAGAAGC+TGG 0.494384 4.4:-21739080 MS.gene053632:CDS
GGTTTCCTTGGCACACCAGC+AGG 0.501896 4.4:+21740033 None:intergenic
TCATCTTCAACAGCAAAGAA+AGG 0.502586 4.4:+21740601 None:intergenic
CATCTTCAACAGCAAAGAAA+GGG 0.505105 4.4:+21740602 None:intergenic
AGCAGAAGAAATATTTCCAC+TGG 0.507649 4.4:-21738888 MS.gene053632:CDS
AATCGCATTGGGGCAACACT+TGG 0.507819 4.4:+21739942 None:intergenic
AAGGTTCGTCTTGGTCGTGC+TGG 0.507899 4.4:-21738911 MS.gene053632:CDS
TTTGCAACCAAGGTTCGTCT+TGG 0.508454 4.4:-21738920 MS.gene053632:CDS
AATACTTAACAGGATTGGGT+TGG 0.515910 4.4:-21738764 MS.gene053632:intron
TGGTTCTGCAACACTATCAA+TGG 0.521809 4.4:-21739238 MS.gene053632:intron
CTACAGGCTAAAGCTGGGGC+TGG 0.522254 4.4:-21739258 MS.gene053632:intron
ATTGGCACAGTGGAATTCAC+TGG 0.525284 4.4:+21739901 None:intergenic
TACAAAACCTGTGATAAAAG+AGG 0.525888 4.4:+21739612 None:intergenic
GATGAAGAACTGAAACCAAT+GGG 0.526120 4.4:+21740577 None:intergenic
AATCAAGTTGACAATCGCAT+TGG 0.528249 4.4:+21739930 None:intergenic
TACGATGTCGTCAACACCCC+TGG 0.528822 4.4:-21740552 MS.gene053632:CDS
GAAGTTGATGTTCCAGTGGT+AGG 0.529113 4.4:-21739660 MS.gene053632:CDS
AGCACGACCAAGACGAACCT+TGG 0.532157 4.4:+21738913 None:intergenic
ATACCTCTCATACTCATTGA+GGG 0.532183 4.4:+21738862 None:intergenic
TTTGCTAACTCATGCCTCCA+TGG 0.532412 4.4:-21739098 MS.gene053632:CDS
AATACCTCTCATACTCATTG+AGG 0.533233 4.4:+21738861 None:intergenic
CTAACATCAGCTGTGACACC+AGG 0.537382 4.4:+21740534 None:intergenic
GCTGAGGTCTTCAAGAAAGC+TGG 0.540699 4.4:-21739874 MS.gene053632:CDS
TCATACTACAGGCTAAAGCT+GGG 0.547408 4.4:-21739263 MS.gene053632:intron
TATTTGGGTTTCTAGGTTCG+CGG 0.547751 4.4:-21740114 MS.gene053632:intron
TGCACTCACAGGCATGGACT+TGG 0.548590 4.4:-21740064 MS.gene053632:CDS
CAAGGAAACCTGGAATGACC+AGG 0.549218 4.4:-21740020 MS.gene053632:CDS
GTGAGTGCATTCTCAAGTTG+TGG 0.555697 4.4:+21740078 None:intergenic
GTTGGCAGGAAGCATCCAGA+AGG 0.557639 4.4:-21738725 MS.gene053632:CDS
CCAGTGGTAGGAGGTCATGC+AGG 0.559555 4.4:-21739648 MS.gene053632:CDS
AGATGAAGAACTGAAACCAA+TGG 0.559879 4.4:+21740576 None:intergenic
TATCTTAAATAAGTCGTCCC+TGG 0.559911 4.4:+21740002 None:intergenic
TGAGAATGCACTCACAGGCA+TGG 0.564594 4.4:-21740070 MS.gene053632:CDS
TGGTGGAACAGAAGTTGTTG+AGG 0.567512 4.4:-21739444 MS.gene053632:intron
CCTGCATGACCTCCTACCAC+TGG 0.567638 4.4:+21739648 None:intergenic
AAAGCGAAGAAAGAGTTGGC+AGG 0.568245 4.4:-21738739 MS.gene053632:CDS
GATTCAAAGTAGCAGTATTG+GGG 0.568602 4.4:-21740647 MS.gene053632:CDS
AATACTGCTACTTTGAATCC+AGG 0.573479 4.4:+21740651 None:intergenic
GCTGTTGAAGATGAACCCAT+TGG 0.574983 4.4:-21740592 MS.gene053632:CDS
CAACTTGAGAATGCACTCAC+AGG 0.578403 4.4:-21740075 MS.gene053632:CDS
CACAGCTGATGTTAGTCACA+TGG 0.583816 4.4:-21740526 MS.gene053632:CDS
GACTTGGTAGTTATACCTGC+TGG 0.591481 4.4:-21740048 MS.gene053632:CDS
ACTTCCTTTCTTTGCAACCA+AGG 0.593363 4.4:-21738930 MS.gene053632:CDS
AGAGCTAACTGCAGAGCCAA+AGG 0.594985 4.4:-21740681 MS.gene053632:CDS
ATAGAAATGGAAGCACATGC+AGG 0.595064 4.4:-21741185 None:intergenic
TTATACCTGCTGGTGTGCCA+AGG 0.602158 4.4:-21740038 MS.gene053632:CDS
CTTCTCCTTTCAAGCCATGG+AGG 0.603278 4.4:+21739084 None:intergenic
ACAAATCGCATTCAAAATGG+TGG 0.604111 4.4:-21739461 MS.gene053632:CDS
TCACATGGACACCGGTGCTG+TGG 0.605555 4.4:-21740511 MS.gene053632:intron
CTAACTGCAGAGCCAAAGGT+GGG 0.608809 4.4:-21740677 MS.gene053632:CDS
AGATAAATGCTGGAATTGTG+AGG 0.611243 4.4:-21739984 MS.gene053632:CDS
GAAAGGAGAAGCTGGAGTGG+TGG 0.612474 4.4:-21739072 MS.gene053632:CDS
TACAGCCCTCGATGTTGTGA+GGG 0.615329 4.4:-21739821 MS.gene053632:CDS
GCTAACTGCAGAGCCAAAGG+TGG 0.616454 4.4:-21740678 MS.gene053632:CDS
TTACAGCCCTCGATGTTGTG+AGG 0.618220 4.4:-21739822 MS.gene053632:CDS
GTTGATGTTCCAGTGGTAGG+AGG 0.622398 4.4:-21739657 MS.gene053632:CDS
GTCCCCTCAATGAGTATGAG+AGG 0.626340 4.4:-21738865 MS.gene053632:intron
CACATGCAGGAGCCAACCAA+AGG 0.627115 4.4:-21741172 MS.gene053632:CDS
TACCTCTCATACTCATTGAG+GGG 0.629921 4.4:+21738863 None:intergenic
TAACATCAGCTGTGACACCA+GGG 0.641600 4.4:+21740535 None:intergenic
CTCAGCAGCAATTGGCACAG+TGG 0.644156 4.4:+21739891 None:intergenic
TTGGCAGGAAGCATCCAGAA+GGG 0.644240 4.4:-21738724 MS.gene053632:CDS
CTTGAAAGGAGAAGCTGGAG+TGG 0.646717 4.4:-21739075 MS.gene053632:CDS
TCTTCAGTGAAGCTACTAGG+AGG 0.648425 4.4:+21739500 None:intergenic
ATTTGCCCTCACAACATCGA+GGG 0.656414 4.4:+21739816 None:intergenic
AAGAGAAGTTGATGTTCCAG+TGG 0.657736 4.4:-21739664 MS.gene053632:CDS
TACTCATTGAGGGGACCCAG+TGG 0.658052 4.4:+21738872 None:intergenic
GATGTTAGTCACATGGACAC+CGG 0.662524 4.4:-21740519 MS.gene053632:CDS
TAACTGCAGAGCCAAAGGTG+GGG 0.668015 4.4:-21740676 MS.gene053632:CDS
ATTGTGAGGACTCTTTGTGA+AGG 0.672821 4.4:-21739970 MS.gene053632:CDS
GCAGAAGAAATATTTCCACT+GGG 0.677199 4.4:-21738887 MS.gene053632:CDS
TCAAGTTGACAATCGCATTG+GGG 0.678396 4.4:+21739932 None:intergenic
AAGGAAACCTGGAATGACCA+GGG 0.681756 4.4:-21740019 MS.gene053632:CDS
AACATCAGCTGTGACACCAG+GGG 0.685298 4.4:+21740536 None:intergenic
ATTCAAAGTAGCAGTATTGG+GGG 0.691272 4.4:-21740646 MS.gene053632:CDS
CATACTACAGGCTAAAGCTG+GGG 0.698547 4.4:-21739262 MS.gene053632:intron
TATTTGCCCTCACAACATCG+AGG 0.709081 4.4:+21739815 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATCAATCAATAATATT+CGG + chr4.4:21738928-21738947 None:intergenic 15.0%
!! ATAAATATTATTCATACTAC+AGG - chr4.4:21740607-21740626 MS.gene053632:CDS 15.0%
!! CAAACTATTAATTTCTTTAT+TGG - chr4.4:21741055-21741074 MS.gene053632:intron 15.0%
!! TTAATAGTTTGATAAACTAT+TGG + chr4.4:21741046-21741065 None:intergenic 15.0%
!!! TCTTTACTTCTAATTTTATT+TGG - chr4.4:21740559-21740578 MS.gene053632:CDS 15.0%
!! CATATCCTTAAAATAAATAG+TGG + chr4.4:21739696-21739715 None:intergenic 20.0%
!! CTTGATATTACAGATAATAA+CGG - chr4.4:21738988-21739007 MS.gene053632:intron 20.0%
!! TGCCTATAAAAAAACAATAT+TGG + chr4.4:21738880-21738899 None:intergenic 20.0%
!! TTTGATGTTTAATACTTAAC+AGG - chr4.4:21741107-21741126 MS.gene053632:intron 20.0%
!!! CTGTAAATTTTGATATGAAA+GGG + chr4.4:21740904-21740923 None:intergenic 20.0%
!!! GATGTCATAAATTTTAAGTA+AGG + chr4.4:21740312-21740331 None:intergenic 20.0%
!!! GTCCAATATTGTTTTTTTAT+AGG - chr4.4:21738875-21738894 MS.gene053632:CDS 20.0%
!!! TTATTTTATTTTTCTCTTGC+AGG - chr4.4:21740172-21740191 MS.gene053632:intron 20.0%
! AAAAAAACCTGGAAATTTGA+AGG + chr4.4:21738762-21738781 None:intergenic 25.0%
! AAAAAACCTGGAAATTTGAA+GGG + chr4.4:21738761-21738780 None:intergenic 25.0%
! AAAGGAAGAAAAAAAAAACC+TGG + chr4.4:21738773-21738792 None:intergenic 25.0%
! GTTTAATACTTAACAGGATT+GGG - chr4.4:21741113-21741132 MS.gene053632:intron 25.0%
! TGTTTAATACTTAACAGGAT+TGG - chr4.4:21741112-21741131 MS.gene053632:intron 25.0%
! TTAAAAACCAAGTTTGAAGA+AGG + chr4.4:21740353-21740372 None:intergenic 25.0%
! TTGATTGATAAGTGTGTATA+AGG - chr4.4:21738935-21738954 MS.gene053632:CDS 25.0%
! TTTGGAAACTTGTAAATTCA+CGG + chr4.4:21739589-21739608 None:intergenic 25.0%
!! GACTTATTTAAGATAAATGC+TGG - chr4.4:21739887-21739906 MS.gene053632:CDS 25.0%
!!! AGGTTTTTTTTTTCTTCCTT+TGG - chr4.4:21738772-21738791 MS.gene053632:intron 25.0%
!!! GCTGTAAATTTTGATATGAA+AGG + chr4.4:21740905-21740924 None:intergenic 25.0%
!!! TCAAGCCACTATTTATTTTA+AGG - chr4.4:21739688-21739707 MS.gene053632:CDS 25.0%
!!! TCTTCAAACTTGGTTTTTAA+AGG - chr4.4:21740353-21740372 MS.gene053632:intron 25.0%
!!! TTTTATCACAGGTTTTGTAA+AGG - chr4.4:21740273-21740292 MS.gene053632:intron 25.0%
ACAAATTTCAGCTTCAGTAA+TGG - chr4.4:21739553-21739572 MS.gene053632:intron 30.0%
ACTATTGTATGAGTATATGC+TGG - chr4.4:21740143-21740162 MS.gene053632:intron 30.0%
ATACTCATACAATAGTAGGA+AGG + chr4.4:21740139-21740158 None:intergenic 30.0%
ATTCAATTACGAGATAGAAG+AGG + chr4.4:21740114-21740133 None:intergenic 30.0%
CGAATGATGCAAGTATATTT+GGG - chr4.4:21739752-21739771 MS.gene053632:intron 30.0%
CTAAACATGATTGATTGTGT+AGG - chr4.4:21740743-21740762 MS.gene053632:intron 30.0%
GCATATACTCATACAATAGT+AGG + chr4.4:21740143-21740162 None:intergenic 30.0%
GCTAGAAAGTTCAATGATAT+TGG - chr4.4:21738813-21738832 MS.gene053632:intron 30.0%
TACAAAACCTGTGATAAAAG+AGG + chr4.4:21740272-21740291 None:intergenic 30.0%
TCGAATGATGCAAGTATATT+TGG - chr4.4:21739751-21739770 MS.gene053632:intron 30.0%
TTAAATTTCGGTCCAAATCA+CGG - chr4.4:21739092-21739111 MS.gene053632:CDS 30.0%
TTATACTCCAATCGCATATT+AGG + chr4.4:21740492-21740511 None:intergenic 30.0%
TTATTGGAAGCAACAAACAA+AGG - chr4.4:21741071-21741090 MS.gene053632:intron 30.0%
TTTATCACCTAATATGCGAT+TGG - chr4.4:21740482-21740501 MS.gene053632:intron 30.0%
! AAGATAAAGAGCATGCATAA+GGG + chr4.4:21740881-21740900 None:intergenic 30.0%
! AATATTGCCTCTTTTATCAC+AGG - chr4.4:21740262-21740281 MS.gene053632:intron 30.0%
! GTAACAGTTGTGTTTTTCTT+TGG - chr4.4:21739648-21739667 MS.gene053632:CDS 30.0%
!! AAGAAGGATAAGCTTGTTAA+CGG - chr4.4:21740510-21740529 MS.gene053632:intron 30.0%
AAGAAAAATTACCACAGCAC+CGG + chr4.4:21739384-21739403 None:intergenic 35.0%
AATACCTCTCATACTCATTG+AGG + chr4.4:21741023-21741042 None:intergenic 35.0%
AATACTTAACAGGATTGGGT+TGG - chr4.4:21741117-21741136 MS.gene053632:intron 35.0%
AATGCGATTTGTCAGGTATT+CGG + chr4.4:21740412-21740431 None:intergenic 35.0%
AATTGGTATCAATTGTGTCC+CGG - chr4.4:21740708-21740727 MS.gene053632:CDS 35.0%
ACAAATCGCATTCAAAATGG+TGG - chr4.4:21740420-21740439 MS.gene053632:intron 35.0%
AGATAAATGCTGGAATTGTG+AGG - chr4.4:21739897-21739916 MS.gene053632:CDS 35.0%
AGATGAAGAACTGAAACCAA+TGG + chr4.4:21739308-21739327 None:intergenic 35.0%
AGCAGAAGAAATATTTCCAC+TGG - chr4.4:21740993-21741012 MS.gene053632:intron 35.0%
AGCCGATAGGGTATAAATTA+GGG - chr4.4:21739019-21739038 MS.gene053632:intron 35.0%
ATACCTCTCATACTCATTGA+GGG + chr4.4:21741022-21741041 None:intergenic 35.0%
CACTAAACCTTCTTCAAACT+TGG - chr4.4:21740343-21740362 MS.gene053632:intron 35.0%
CATCTTCAACAGCAAAGAAA+GGG + chr4.4:21739282-21739301 None:intergenic 35.0%
CGATGTCACTGCTTAAATTT+CGG - chr4.4:21739080-21739099 MS.gene053632:CDS 35.0%
CTGACAAATCGCATTCAAAA+TGG - chr4.4:21740417-21740436 MS.gene053632:intron 35.0%
GATGAAGAACTGAAACCAAT+GGG + chr4.4:21739307-21739326 None:intergenic 35.0%
GATTCAAAGTAGCAGTATTG+GGG - chr4.4:21739234-21739253 MS.gene053632:intron 35.0%
GCAGAAGAAATATTTCCACT+GGG - chr4.4:21740994-21741013 MS.gene053632:intron 35.0%
GGATTCAAAGTAGCAGTATT+GGG - chr4.4:21739233-21739252 MS.gene053632:intron 35.0%
GGGAAAAAAGGACTTGAAAT+TGG + chr4.4:21740861-21740880 None:intergenic 35.0%
TAATGAATTCTACTCCCTTC+TGG + chr4.4:21741174-21741193 None:intergenic 35.0%
TATCTTAAATAAGTCGTCCC+TGG + chr4.4:21739882-21739901 None:intergenic 35.0%
TATGCGATTGGAGTATAAGA+AGG - chr4.4:21740494-21740513 MS.gene053632:intron 35.0%
TCATCTTCAACAGCAAAGAA+AGG + chr4.4:21739283-21739302 None:intergenic 35.0%
TGGATTCAAAGTAGCAGTAT+TGG - chr4.4:21739232-21739251 MS.gene053632:intron 35.0%
! ATTCAAAGTAGCAGTATTGG+GGG - chr4.4:21739235-21739254 MS.gene053632:intron 35.0%
! CATTTTGAATGCGATTTGTC+AGG + chr4.4:21740419-21740438 None:intergenic 35.0%
! GAAGATAAAGAGCATGCATA+AGG + chr4.4:21740882-21740901 None:intergenic 35.0%
! GCAAGTATATTTGGGTTTCT+AGG - chr4.4:21739760-21739779 MS.gene053632:intron 35.0%
! TATGATCCAAAGCGACTTTT+AGG - chr4.4:21740034-21740053 MS.gene053632:CDS 35.0%
! TATGTCTGTTTTGTGATGAC+AGG - chr4.4:21739154-21739173 MS.gene053632:intron 35.0%
!! AATACTGCTACTTTGAATCC+AGG + chr4.4:21739233-21739252 None:intergenic 35.0%
!! AATCAAGTTGACAATCGCAT+TGG + chr4.4:21739954-21739973 None:intergenic 35.0%
!! ATCAAGTTGACAATCGCATT+GGG + chr4.4:21739953-21739972 None:intergenic 35.0%
!! TGTTTTTCTTTGGTTCAACC+TGG - chr4.4:21739658-21739677 MS.gene053632:CDS 35.0%
AAGTCACGTTCAAAGTGCAT+AGG + chr4.4:21739523-21739542 None:intergenic 40.0%
ACTGGAACATCAACTTCTCT+TGG + chr4.4:21740218-21740237 None:intergenic 40.0%
ACTTCCTTTCTTTGCAACCA+AGG - chr4.4:21740951-21740970 MS.gene053632:intron 40.0%
ATTGTGAGGACTCTTTGTGA+AGG - chr4.4:21739911-21739930 MS.gene053632:CDS 40.0%
CAGAGATTCTTGCAATCCTT+TGG + chr4.4:21738728-21738747 None:intergenic 40.0%
CAGCCGATAGGGTATAAATT+AGG - chr4.4:21739018-21739037 MS.gene053632:intron 40.0%
CGTTAGCTGAATGAAACCAA+AGG + chr4.4:21738791-21738810 None:intergenic 40.0%
GAACATGAGAAATGTCAACG+CGG + chr4.4:21739501-21739520 None:intergenic 40.0%
GAGCATGCATAAGGGAAAAA+AGG + chr4.4:21740873-21740892 None:intergenic 40.0%
GATTCTTGCAATCCTTTGGT+TGG + chr4.4:21738724-21738743 None:intergenic 40.0%
GGAAAAAGCGAAGAAAGAGT+TGG - chr4.4:21741138-21741157 MS.gene053632:CDS 40.0%
GGCCCTAATTTATACCCTAT+CGG + chr4.4:21739024-21739043 None:intergenic 40.0%
GTAACTCCTAAAAGTCGCTT+TGG + chr4.4:21740043-21740062 None:intergenic 40.0%
TACCTCTCATACTCATTGAG+GGG + chr4.4:21741021-21741040 None:intergenic 40.0%
TCATACTACAGGCTAAAGCT+GGG - chr4.4:21740618-21740637 MS.gene053632:CDS 40.0%
TCTTCACCCTTCAAATTTCC+AGG - chr4.4:21738752-21738771 MS.gene053632:CDS 40.0%
TCTTCTTCAGTGAAGCTACT+AGG + chr4.4:21740387-21740406 None:intergenic 40.0%
TGTTTAGTTAGTCCCTCTAC+CGG + chr4.4:21740730-21740749 None:intergenic 40.0%
TTCATACTACAGGCTAAAGC+TGG - chr4.4:21740617-21740636 MS.gene053632:CDS 40.0%
TTTCAGCTTCAGTAATGGCA+CGG - chr4.4:21739558-21739577 MS.gene053632:intron 40.0%
! TATTTGGGTTTCTAGGTTCG+CGG - chr4.4:21739767-21739786 MS.gene053632:intron 40.0%
! TATTTTTCTCTTGCAGGCAG+AGG - chr4.4:21740178-21740197 MS.gene053632:intron 40.0%
! TCTGTTTTGTGATGACAGGA+AGG - chr4.4:21739158-21739177 MS.gene053632:intron 40.0%
! TGGTTCTGCAACACTATCAA+TGG - chr4.4:21740643-21740662 MS.gene053632:CDS 40.0%
! TGTGAGGGCAAATACTTTTG+TGG - chr4.4:21740075-21740094 MS.gene053632:CDS 40.0%
!! AAGAGAAGTTGATGTTCCAG+TGG - chr4.4:21740217-21740236 MS.gene053632:intron 40.0%
!! GTGTGCTTATGTTGATTCTC+AGG - chr4.4:21740833-21740852 MS.gene053632:intron 40.0%
!! TCAAGTTGACAATCGCATTG+GGG + chr4.4:21739952-21739971 None:intergenic 40.0%
AAAGCGAAGAAAGAGTTGGC+AGG - chr4.4:21741142-21741161 MS.gene053632:CDS 45.0%
AAATGTCTGCCACCGTGATT+TGG + chr4.4:21739107-21739126 None:intergenic 45.0%
AAGGAAACCTGGAATGACCA+GGG - chr4.4:21739862-21739881 MS.gene053632:CDS 45.0%
AAGTTCCACGCACACTCAAT+TGG - chr4.4:21740691-21740710 MS.gene053632:CDS 45.0%
AATTTCGGTCCAAATCACGG+TGG - chr4.4:21739095-21739114 MS.gene053632:CDS 45.0%
AGCAGTGACATCGAAGTTCT+TGG + chr4.4:21739073-21739092 None:intergenic 45.0%
ATATATTTGCAGCCGCAACG+CGG + chr4.4:21739045-21739064 None:intergenic 45.0%
ATCAATTGTGTCCCGGTAGA+GGG - chr4.4:21740715-21740734 MS.gene053632:intron 45.0%
ATTGGCACAGTGGAATTCAC+TGG + chr4.4:21739983-21740002 None:intergenic 45.0%
ATTTGCCCTCACAACATCGA+GGG + chr4.4:21740068-21740087 None:intergenic 45.0%
CAACTTGAGAATGCACTCAC+AGG - chr4.4:21739806-21739825 MS.gene053632:intron 45.0%
CACAGCTGATGTTAGTCACA+TGG - chr4.4:21739355-21739374 MS.gene053632:intron 45.0%
CATACTACAGGCTAAAGCTG+GGG - chr4.4:21740619-21740638 MS.gene053632:CDS 45.0%
CGAACCTTGGTTGCAAAGAA+AGG + chr4.4:21740958-21740977 None:intergenic 45.0%
CGCGTGTCTTCAATAGGTTA+CGG - chr4.4:21740927-21740946 MS.gene053632:intron 45.0%
GATGTTAGTCACATGGACAC+CGG - chr4.4:21739362-21739381 MS.gene053632:intron 45.0%
GCTGTTGAAGATGAACCCAT+TGG - chr4.4:21739289-21739308 MS.gene053632:intron 45.0%
GTGGCTGTGCTAATTCATAG+TGG - chr4.4:21739622-21739641 MS.gene053632:CDS 45.0%
GTTTAGTTAGTCCCTCTACC+GGG + chr4.4:21740729-21740748 None:intergenic 45.0%
TAACATCAGCTGTGACACCA+GGG + chr4.4:21739349-21739368 None:intergenic 45.0%
TAGTGGCTTGAACAGAATCC+AGG + chr4.4:21739679-21739698 None:intergenic 45.0%
TATAAATTAGGGCCGCGTTG+CGG - chr4.4:21739030-21739049 MS.gene053632:intron 45.0%
TATCAATTGTGTCCCGGTAG+AGG - chr4.4:21740714-21740733 MS.gene053632:intron 45.0%
TATTTGCCCTCACAACATCG+AGG + chr4.4:21740069-21740088 None:intergenic 45.0%
TCCAAACACGCACTTAGTAG+TGG - chr4.4:21739603-21739622 MS.gene053632:intron 45.0%
TCTTCAGTGAAGCTACTAGG+AGG + chr4.4:21740384-21740403 None:intergenic 45.0%
TGATACCAATTGAGTGTGCG+TGG + chr4.4:21740699-21740718 None:intergenic 45.0%
TGGTGGAACAGAAGTTGTTG+AGG - chr4.4:21740437-21740456 MS.gene053632:intron 45.0%
TTGAAGACCTCAGCAGCAAT+TGG + chr4.4:21740001-21740020 None:intergenic 45.0%
TTTGCAACCAAGGTTCGTCT+TGG - chr4.4:21740961-21740980 MS.gene053632:intron 45.0%
TTTGCTAACTCATGCCTCCA+TGG - chr4.4:21740783-21740802 MS.gene053632:intron 45.0%
! GACTTGGTAGTTATACCTGC+TGG - chr4.4:21739833-21739852 MS.gene053632:CDS 45.0%
! GTGAGTGCATTCTCAAGTTG+TGG + chr4.4:21739806-21739825 None:intergenic 45.0%
! GTTTTGTGATGACAGGAAGG+AGG - chr4.4:21739161-21739180 MS.gene053632:intron 45.0%
! TTCTAGGTTCGCGGCTTTTT+GGG - chr4.4:21739776-21739795 MS.gene053632:intron 45.0%
! TTTCTAGGTTCGCGGCTTTT+TGG - chr4.4:21739775-21739794 MS.gene053632:intron 45.0%
!! GAAGTTGATGTTCCAGTGGT+AGG - chr4.4:21740221-21740240 MS.gene053632:intron 45.0%
!! AAAAAAATTTAAATCATATT+TGG - chr4.4:21739468-21739487 MS.gene053632:CDS 5.0%
AACATCAGCTGTGACACCAG+GGG + chr4.4:21739348-21739367 None:intergenic 50.0%
AACGGTCAAATGCAGCCGAT+AGG - chr4.4:21739006-21739025 MS.gene053632:intron 50.0%
AATCGCATTGGGGCAACACT+TGG + chr4.4:21739942-21739961 None:intergenic 50.0%
ACGGTCAAATGCAGCCGATA+GGG - chr4.4:21739007-21739026 MS.gene053632:intron 50.0%
AGAGCTAACTGCAGAGCCAA+AGG - chr4.4:21739200-21739219 MS.gene053632:intron 50.0%
CAAGGAAACCTGGAATGACC+AGG - chr4.4:21739861-21739880 MS.gene053632:CDS 50.0%
CAGCTTCTCCTTTCAAGCCA+TGG + chr4.4:21740803-21740822 None:intergenic 50.0%
CATGGCTTGAAAGGAGAAGC+TGG - chr4.4:21740801-21740820 MS.gene053632:intron 50.0%
CTAACATCAGCTGTGACACC+AGG + chr4.4:21739350-21739369 None:intergenic 50.0%
CTAACTGCAGAGCCAAAGGT+GGG - chr4.4:21739204-21739223 MS.gene053632:intron 50.0%
CTGGTCATTCCAGGTTTCCT+TGG + chr4.4:21739863-21739882 None:intergenic 50.0%
CTTCTCCTTTCAAGCCATGG+AGG + chr4.4:21740800-21740819 None:intergenic 50.0%
CTTGAAAGGAGAAGCTGGAG+TGG - chr4.4:21740806-21740825 MS.gene053632:intron 50.0%
GCCACTACTAAGTGCGTGTT+TGG + chr4.4:21739607-21739626 None:intergenic 50.0%
GCTGAGGTCTTCAAGAAAGC+TGG - chr4.4:21740007-21740026 MS.gene053632:CDS 50.0%
GTCCCCTCAATGAGTATGAG+AGG - chr4.4:21741016-21741035 MS.gene053632:intron 50.0%
GTTGATGTTCCAGTGGTAGG+AGG - chr4.4:21740224-21740243 MS.gene053632:intron 50.0%
TAACTGCAGAGCCAAAGGTG+GGG - chr4.4:21739205-21739224 MS.gene053632:intron 50.0%
TACAGCCCTCGATGTTGTGA+GGG - chr4.4:21740060-21740079 MS.gene053632:CDS 50.0%
TCATGCCTCCATGGCTTGAA+AGG - chr4.4:21740792-21740811 MS.gene053632:intron 50.0%
TGAGAATGCACTCACAGGCA+TGG - chr4.4:21739811-21739830 MS.gene053632:CDS 50.0%
TTACAGCCCTCGATGTTGTG+AGG - chr4.4:21740059-21740078 MS.gene053632:CDS 50.0%
TTATACCTGCTGGTGTGCCA+AGG - chr4.4:21739843-21739862 MS.gene053632:CDS 50.0%
! TCTAGGTTCGCGGCTTTTTG+GGG - chr4.4:21739777-21739796 MS.gene053632:intron 50.0%
!! TTGGCAGGAAGCATCCAGAA+GGG - chr4.4:21741157-21741176 MS.gene053632:CDS 50.0%
AAGGTTCGTCTTGGTCGTGC+TGG - chr4.4:21740970-21740989 MS.gene053632:intron 55.0%
AAGTCGTCCCTGGTCATTCC+AGG + chr4.4:21739872-21739891 None:intergenic 55.0%
AGCACGACCAAGACGAACCT+TGG + chr4.4:21740971-21740990 None:intergenic 55.0%
CACATGCAGGAGCCAACCAA+AGG - chr4.4:21738709-21738728 MS.gene053632:CDS 55.0%
CACTGTGCCAATTGCTGCTG+AGG - chr4.4:21739991-21740010 MS.gene053632:CDS 55.0%
CAGCAGCGCGTGTCTTCAAT+AGG - chr4.4:21740921-21740940 MS.gene053632:intron 55.0%
CTCAGCAGCAATTGGCACAG+TGG + chr4.4:21739993-21740012 None:intergenic 55.0%
GAAAGGAGAAGCTGGAGTGG+TGG - chr4.4:21740809-21740828 MS.gene053632:intron 55.0%
GCTAACTGCAGAGCCAAAGG+TGG - chr4.4:21739203-21739222 MS.gene053632:intron 55.0%
TACGATGTCGTCAACACCCC+TGG - chr4.4:21739329-21739348 MS.gene053632:intron 55.0%
TACTCATTGAGGGGACCCAG+TGG + chr4.4:21741012-21741031 None:intergenic 55.0%
TGCACTCACAGGCATGGACT+TGG - chr4.4:21739817-21739836 MS.gene053632:CDS 55.0%
!! CTCTTGCAGGCAGAGGTACT+CGG - chr4.4:21740185-21740204 MS.gene053632:intron 55.0%
!! GTTGGCAGGAAGCATCCAGA+AGG - chr4.4:21741156-21741175 MS.gene053632:CDS 55.0%
CCAGTGGTAGGAGGTCATGC+AGG - chr4.4:21740233-21740252 MS.gene053632:intron 60.0%
CCTGCATGACCTCCTACCAC+TGG + chr4.4:21740236-21740255 None:intergenic 60.0%
CTACAGGCTAAAGCTGGGGC+TGG - chr4.4:21740623-21740642 MS.gene053632:CDS 60.0%
GAATCCAGGTGCCCCACCTT+TGG + chr4.4:21739219-21739238 None:intergenic 60.0%
GCTGGTGTGCCAAGGAAACC+TGG - chr4.4:21739851-21739870 MS.gene053632:CDS 60.0%
GGTTTCCTTGGCACACCAGC+AGG + chr4.4:21739851-21739870 None:intergenic 60.0%
TTGGGGGCTGCTGGTGGAAT+TGG - chr4.4:21739251-21739270 MS.gene053632:CDS 60.0%
! GTAGCAGTATTGGGGGCTGC+TGG - chr4.4:21739242-21739261 MS.gene053632:CDS 60.0%
! TCACATGGACACCGGTGCTG+TGG - chr4.4:21739370-21739389 MS.gene053632:intron 60.0%
! AGAGCCAAAGGTGGGGCACC+TGG - chr4.4:21739212-21739231 MS.gene053632:intron 65.0%
! GCAGTATTGGGGGCTGCTGG+TGG - chr4.4:21739245-21739264 MS.gene053632:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 21738702 21741201 21738702 ID=MS.gene053632
chr4.4 mRNA 21738702 21741201 21738702 ID=MS.gene053632.t1;Parent=MS.gene053632
chr4.4 exon 21741130 21741201 21741130 ID=MS.gene053632.t1.exon1;Parent=MS.gene053632.t1
chr4.4 CDS 21741130 21741201 21741130 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
chr4.4 exon 21740512 21740727 21740512 ID=MS.gene053632.t1.exon2;Parent=MS.gene053632.t1
chr4.4 CDS 21740512 21740727 21740512 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
chr4.4 exon 21739807 21740121 21739807 ID=MS.gene053632.t1.exon3;Parent=MS.gene053632.t1
chr4.4 CDS 21739807 21740121 21739807 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
chr4.4 exon 21739620 21739709 21739620 ID=MS.gene053632.t1.exon4;Parent=MS.gene053632.t1
chr4.4 CDS 21739620 21739709 21739620 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
chr4.4 exon 21739445 21739528 21739445 ID=MS.gene053632.t1.exon5;Parent=MS.gene053632.t1
chr4.4 CDS 21739445 21739528 21739445 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
chr4.4 exon 21739239 21739274 21739239 ID=MS.gene053632.t1.exon6;Parent=MS.gene053632.t1
chr4.4 CDS 21739239 21739274 21739239 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
chr4.4 exon 21739049 21739138 21739049 ID=MS.gene053632.t1.exon7;Parent=MS.gene053632.t1
chr4.4 CDS 21739049 21739138 21739049 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
chr4.4 exon 21738866 21738960 21738866 ID=MS.gene053632.t1.exon8;Parent=MS.gene053632.t1
chr4.4 CDS 21738866 21738960 21738866 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
chr4.4 exon 21738702 21738774 21738702 ID=MS.gene053632.t1.exon9;Parent=MS.gene053632.t1
chr4.4 CDS 21738702 21738774 21738702 ID=cds.MS.gene053632.t1;Parent=MS.gene053632.t1
Gene Sequence

>MS.gene053632

ATGGAAGCACATGCAGGAGCCAACCAAAGGATTGCAAGAATCTCTGCTCATCTTCACCCTTCAAATTTCCAGGTTTTTTTTTTCTTCCTTTGGTTTCATTCAGCTAACGTAGCTAGAAAGTTCAATGATATTGGTTTGTATTACTTGCATGATAAACTTGAGTTTTCACTGTTGTCCAATATTGTTTTTTTATAGGCAAATGTTAGTAATTAATTAATTGTTGCCGAATATTATTGATTGATAAGTGTGTATAAGGTTTTAAATTTTGCGAATTCGCATAGCAAATCTTGATATTACAGATAATAACGGTCAAATGCAGCCGATAGGGTATAAATTAGGGCCGCGTTGCGGCTGCAAATATATCAAAACCAAGAACTTCGATGTCACTGCTTAAATTTCGGTCCAAATCACGGTGGCAGACATTTTATCTTAAAATTATTGTGTATGAATGCTATGTCTGTTTTGTGATGACAGGAAGGAGGTGATGTTGTAATTGACAGAGCTAACTGCAGAGCCAAAGGTGGGGCACCTGGATTCAAAGTAGCAGTATTGGGGGCTGCTGGTGGAATTGGTCAATCCCTTTCTTTGCTGTTGAAGATGAACCCATTGGTTTCAGTTCTTCATCTTTACGATGTCGTCAACACCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACCGGTGCTGTGGTAATTTTTCTTTTTCATCACTTTTCTATTTTTTTTTTCTATTTAACATAATGTTGATATCATCTAAAATTGTATCAAAAAAATTTAAATCATATTTGGTTGTGTGCCGCGTTGACATTTCTCATGTTCCTATGCACTTTGAACGTGACTTTATTGAAGCAACAAATTTCAGCTTCAGTAATGGCACGGTGACACCGTGAATTTACAAGTTTCCAAACACGCACTTAGTAGTGGCTGTGCTAATTCATAGTGGATAGTAACAGTTGTGTTTTTCTTTGGTTCAACCTGGATTCTGTTCAAGCCACTATTTATTTTAAGGATATGCGAGTTGTTTTAACAATATTTAGCTTCTATTATGTTCGAATGATGCAAGTATATTTGGGTTTCTAGGTTCGCGGCTTTTTGGGGCAACCACAACTTGAGAATGCACTCACAGGCATGGACTTGGTAGTTATACCTGCTGGTGTGCCAAGGAAACCTGGAATGACCAGGGACGACTTATTTAAGATAAATGCTGGAATTGTGAGGACTCTTTGTGAAGGAATTGCCAAGTGTTGCCCCAATGCGATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTGCCAATTGCTGCTGAGGTCTTCAAGAAAGCTGGTACATATGATCCAAAGCGACTTTTAGGAGTTACAGCCCTCGATGTTGTGAGGGCAAATACTTTTGTGGTAAGCATAGCTTTCCTCTTCTATCTCGTAATTGAATTTCCTTCCTACTATTGTATGAGTATATGCTGGTGTATTTTATTTTATTTTTCTCTTGCAGGCAGAGGTACTCGGTGTTGATCCAAGAGAAGTTGATGTTCCAGTGGTAGGAGGTCATGCAGGAGTCACAATATTGCCTCTTTTATCACAGGTTTTGTAAAGGATACTTGATACTTCCTTACTTAAAATTTATGACATCGTTAAACAAGTCACTAAACCTTCTTCAAACTTGGTTTTTAAAGGTTAAGCCTCCTAGTAGCTTCACTGAAGAAGAAACCGAATACCTGACAAATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGTAATGTTCATATAAGTAACGAGTTTATCACCTAATATGCGATTGGAGTATAAGAAGGATAAGCTTGTTAACGGATTGATAATTTACACTGAACTTCATTTCTTTACTTCTAATTTTATTTGGCTTATGACTGATTAACTATAATCTAATAAATATTATTCATACTACAGGCTAAAGCTGGGGCTGGTTCTGCAACACTATCAATGGTTAATAGTTTATCTCAATATTTCTAAAGTTCCACGCACACTCAATTGGTATCAATTGTGTCCCGGTAGAGGGACTAACTAAACATGATTGATTGTGTAGGCATATGCAGCTGCTAAGTTTGCTAACTCATGCCTCCATGGCTTGAAAGGAGAAGCTGGAGTGGTGGAGTGTGCTTATGTTGATTCTCAGGTGCCAATTTCAAGTCCTTTTTTCCCTTATGCATGCTCTTTATCTTCCCTTTCATATCAAAATTTACAGCAGCGCGTGTCTTCAATAGGTTACGGAACTTCCTTTCTTTGCAACCAAGGTTCGTCTTGGTCGTGCTGGAGCAGAAGAAATATTTCCACTGGGTCCCCTCAATGAGTATGAGAGGTATTCCAATAGTTTATCAAACTATTAATTTCTTTATTGGAAGCAACAAACAAAGGAAAATGTTAGAATTTTGATGTTTAATACTTAACAGGATTGGGTTGGAAAAAGCGAAGAAAGAGTTGGCAGGAAGCATCCAGAAGGGAGTAGAATTCATTAAAAAATAA

Protein sequence

>MS.gene053632.t1

MEAHAGANQRIARISAHLHPSNFQEGGDVVIDRANCRAKGGAPGFKVAVLGAAGGIGQSLSLLLKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTALDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTEEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSCLHGLKGEAGVVECAYVDSQVTELPFFATKVRLGRAGAEEIFPLGPLNEYERIGLEKAKKELAGSIQKGVEFIKK