Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033210.t1 | XP_003608925.1 | 97.4 | 340 | 9 | 0 | 1 | 340 | 1 | 340 | 1.50E-186 | 662.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033210.t1 | O48716 | 32.7 | 284 | 171 | 6 | 59 | 339 | 98 | 364 | 5.5e-33 | 143.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033210.t1 | G7JNR9 | 97.4 | 340 | 9 | 0 | 1 | 340 | 1 | 340 | 1.1e-186 | 662.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006731 | MS.gene033210 | PPI |
| MS.gene033210 | MS.gene045436 | PPI |
| MS.gene033210 | MS.gene070758 | PPI |
| MS.gene070761 | MS.gene033210 | PPI |
| MS.gene070760 | MS.gene033210 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033210.t1 | MTR_4g106480 | 97.353 | 340 | 9 | 0 | 1 | 340 | 1 | 340 | 0.0 | 675 |
| MS.gene033210.t1 | MTR_3g078380 | 63.401 | 347 | 97 | 8 | 14 | 340 | 18 | 354 | 5.11e-143 | 412 |
| MS.gene033210.t1 | MTR_5g035980 | 52.339 | 342 | 127 | 9 | 33 | 343 | 48 | 384 | 7.61e-109 | 326 |
| MS.gene033210.t1 | MTR_5g035980 | 22.874 | 341 | 168 | 10 | 30 | 339 | 166 | 442 | 2.29e-12 | 68.6 |
| MS.gene033210.t1 | MTR_8g089650 | 48.916 | 323 | 142 | 9 | 26 | 339 | 61 | 369 | 3.06e-94 | 289 |
| MS.gene033210.t1 | MTR_4g104410 | 42.560 | 336 | 172 | 11 | 39 | 370 | 20 | 338 | 3.94e-72 | 229 |
| MS.gene033210.t1 | MTR_1g021590 | 42.160 | 287 | 140 | 9 | 59 | 339 | 111 | 377 | 6.50e-66 | 216 |
| MS.gene033210.t1 | MTR_5g018520 | 40.283 | 283 | 151 | 5 | 59 | 339 | 99 | 365 | 2.17e-65 | 214 |
| MS.gene033210.t1 | MTR_4g068457 | 40.000 | 285 | 153 | 5 | 59 | 339 | 130 | 400 | 5.97e-64 | 212 |
| MS.gene033210.t1 | MTR_2g060070 | 36.525 | 282 | 159 | 9 | 60 | 339 | 67 | 330 | 2.98e-54 | 184 |
| MS.gene033210.t1 | MTR_2g101410 | 32.665 | 349 | 203 | 11 | 5 | 342 | 26 | 353 | 1.40e-40 | 148 |
| MS.gene033210.t1 | MTR_3g110185 | 34.386 | 285 | 163 | 9 | 60 | 339 | 91 | 356 | 1.85e-36 | 140 |
| MS.gene033210.t1 | MTR_1g072140 | 29.379 | 177 | 113 | 6 | 170 | 343 | 18 | 185 | 2.13e-11 | 64.7 |
| MS.gene033210.t1 | MTR_7g095190 | 28.655 | 171 | 108 | 5 | 179 | 338 | 62 | 229 | 6.24e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033210.t1 | AT5G50120 | 57.729 | 317 | 117 | 6 | 36 | 339 | 19 | 331 | 7.25e-123 | 360 |
| MS.gene033210.t1 | AT1G24130 | 58.730 | 315 | 117 | 7 | 33 | 339 | 45 | 354 | 2.25e-119 | 352 |
| MS.gene033210.t1 | AT1G24530 | 46.708 | 319 | 146 | 9 | 28 | 339 | 51 | 352 | 2.29e-88 | 273 |
| MS.gene033210.t1 | AT2G26490 | 40.141 | 284 | 150 | 6 | 59 | 339 | 98 | 364 | 7.90e-63 | 208 |
| MS.gene033210.t1 | AT3G50390 | 37.627 | 295 | 163 | 8 | 59 | 348 | 100 | 378 | 6.81e-59 | 198 |
| MS.gene033210.t1 | AT3G50390 | 23.077 | 247 | 143 | 9 | 68 | 305 | 224 | 432 | 4.72e-11 | 64.3 |
| MS.gene033210.t1 | AT3G18950 | 39.519 | 291 | 156 | 8 | 59 | 346 | 140 | 413 | 1.35e-57 | 194 |
| MS.gene033210.t1 | AT1G49450 | 38.255 | 298 | 164 | 8 | 52 | 346 | 129 | 409 | 2.17e-57 | 194 |
| MS.gene033210.t1 | AT3G51930 | 38.644 | 295 | 152 | 9 | 60 | 339 | 64 | 344 | 3.58e-56 | 189 |
| MS.gene033210.t1 | AT4G34380 | 38.869 | 283 | 155 | 6 | 59 | 339 | 127 | 393 | 1.39e-55 | 190 |
| MS.gene033210.t1 | AT1G47610 | 38.246 | 285 | 154 | 9 | 59 | 339 | 26 | 292 | 4.67e-54 | 182 |
| MS.gene033210.t1 | AT3G49180 | 34.225 | 187 | 93 | 8 | 176 | 341 | 116 | 293 | 3.30e-14 | 73.9 |
| MS.gene033210.t1 | AT1G21650 | 27.014 | 211 | 96 | 5 | 179 | 339 | 523 | 725 | 3.08e-12 | 68.9 |
Find 76 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGATAAGACAATTCGAATT+TGG | 0.268980 | 8.3:+16723722 | MS.gene033210:CDS |
| GTTGAGGGTGAGAATGAATA+TGG | 0.282172 | 8.3:-16722985 | None:intergenic |
| ATGTTGGGAGTGTGGCTAAA+TGG | 0.285118 | 8.3:-16723162 | None:intergenic |
| TCAATATTGGTATCTGAAAA+AGG | 0.299182 | 8.3:+16723601 | MS.gene033210:CDS |
| CCTTGTTATATTCTGTTTCA+TGG | 0.304199 | 8.3:+16723308 | MS.gene033210:CDS |
| ATATCCTCTTTAACACTTGT+AGG | 0.315862 | 8.3:+16722908 | MS.gene033210:CDS |
| AACCAAAGACTTCACGTGTT+TGG | 0.328930 | 8.3:+16723354 | MS.gene033210:CDS |
| TTCCAAACACGTGAAGTCTT+TGG | 0.336054 | 8.3:-16723356 | None:intergenic |
| AACACTAACACAATAGTATC+TGG | 0.378047 | 8.3:+16723016 | MS.gene033210:CDS |
| TTGAGATTCGTTGTTGATAT+TGG | 0.387479 | 8.3:-16723125 | None:intergenic |
| CACAAAGTCTATATTGTGTT+TGG | 0.388010 | 8.3:+16723666 | MS.gene033210:CDS |
| GTGAGACTCATGAGAATAAA+GGG | 0.388752 | 8.3:+16725286 | MS.gene033210:CDS |
| TTTGGCTGTGGTTTCCGATT+TGG | 0.391666 | 8.3:+16723684 | MS.gene033210:CDS |
| AAGAATTATGAAATTGTTGT+GGG | 0.404491 | 8.3:-16722847 | None:intergenic |
| AAAACCATGTTAATATTAGA+AGG | 0.405172 | 8.3:+16723218 | MS.gene033210:CDS |
| GGTGAGACTCATGAGAATAA+AGG | 0.408744 | 8.3:+16725285 | MS.gene033210:CDS |
| TACGTGAATGGCAGGGAAAA+GGG | 0.414962 | 8.3:+16725227 | MS.gene033210:intron |
| ACATTTGTTAGTTGATACTT+TGG | 0.417662 | 8.3:+16723501 | MS.gene033210:CDS |
| CAAGGTTCCATCTTTAGATA+AGG | 0.424143 | 8.3:-16723290 | None:intergenic |
| TGTTGGGAGTGTGGCTAAAT+GGG | 0.428968 | 8.3:-16723161 | None:intergenic |
| AAGATAACAAAATCCGCGTT+TGG | 0.438563 | 8.3:+16723095 | MS.gene033210:CDS |
| GTCTATATTGTGTTTGGCTG+TGG | 0.439005 | 8.3:+16723672 | MS.gene033210:CDS |
| ATTGAAGGAGGGAGACAAAC+AGG | 0.442934 | 8.3:+16725264 | MS.gene033210:CDS |
| GTGAAACGATCTATGAATGT+TGG | 0.451524 | 8.3:-16723178 | None:intergenic |
| AGACTTCACGTGTTTGGAAT+CGG | 0.453279 | 8.3:+16723360 | MS.gene033210:CDS |
| ATACGTGAATGGCAGGGAAA+AGG | 0.454706 | 8.3:+16725226 | MS.gene033210:intron |
| AACACAATAGTATCTGGAAA+TGG | 0.466792 | 8.3:+16723022 | MS.gene033210:CDS |
| TGCATGTGATAGATCAATAT+TGG | 0.470368 | 8.3:+16723588 | MS.gene033210:CDS |
| GCAATCACAGTTTCTAATGA+TGG | 0.473911 | 8.3:+16723412 | MS.gene033210:CDS |
| TGAAACGATCTATGAATGTT+GGG | 0.478701 | 8.3:-16723177 | None:intergenic |
| GAAGAATTATGAAATTGTTG+TGG | 0.479398 | 8.3:-16722848 | None:intergenic |
| AATGGTAATTTGATAGTCAT+AGG | 0.480190 | 8.3:+16723628 | MS.gene033210:CDS |
| CTTGTTATATTCTGTTTCAT+GGG | 0.480779 | 8.3:+16723309 | MS.gene033210:CDS |
| ACTTTGGAGAAACACAGGTC+TGG | 0.494679 | 8.3:+16723517 | MS.gene033210:CDS |
| TTGTCTCCCTCCTTCAATGT+CGG | 0.495095 | 8.3:-16725259 | None:intergenic |
| CCATGATGTGACTTCTGTGT+TGG | 0.496060 | 8.3:-16722954 | None:intergenic |
| GAAACATTGAGTGCAGGAAC+AGG | 0.497258 | 8.3:+16725309 | MS.gene033210:CDS |
| TAGTGTTAATTGATTGTTGA+GGG | 0.498235 | 8.3:-16723000 | None:intergenic |
| AGAACCACTGCACACCAAAT+CGG | 0.501162 | 8.3:-16723698 | None:intergenic |
| CTTTGGAGAAACACAGGTCT+GGG | 0.512071 | 8.3:+16723518 | MS.gene033210:CDS |
| TCTCTTGCCTTATCTAAAGA+TGG | 0.516196 | 8.3:+16723283 | MS.gene033210:CDS |
| GGTGAAGGAACCGACATTGA+AGG | 0.523489 | 8.3:+16725249 | MS.gene033210:CDS |
| CAGGTCTGGGATTAATGCAT+TGG | 0.528247 | 8.3:+16723531 | MS.gene033210:CDS |
| GTAGGAAAATTCCTTTACAC+TGG | 0.545108 | 8.3:+16722926 | MS.gene033210:CDS |
| GCATTGGCTCTTAACAGTGA+TGG | 0.550237 | 8.3:+16723547 | MS.gene033210:CDS |
| GTTATTAGAGTCGTTGCTGA+AGG | 0.556540 | 8.3:-16722747 | None:intergenic |
| ATAGTCATAGGTGCTCTTCG+TGG | 0.558858 | 8.3:+16723640 | MS.gene033210:CDS |
| AAAGGGGAAACATTGAGTGC+AGG | 0.564503 | 8.3:+16725303 | MS.gene033210:CDS |
| CAGAGTTGTGAGGCATGTGA+AGG | 0.571298 | 8.3:-16722870 | None:intergenic |
| CCAACACAGAAGTCACATCA+TGG | 0.577575 | 8.3:+16722954 | MS.gene033210:CDS |
| CTTGTCTGAATGAACTACAA+TGG | 0.582865 | 8.3:-16723056 | None:intergenic |
| ATGGCAGGGAAAAGGGGTGA+AGG | 0.583724 | 8.3:+16725234 | MS.gene033210:intron |
| TTCATGGGACAGAACAATCA+AGG | 0.585469 | 8.3:+16723324 | MS.gene033210:CDS |
| TTGATACTTTGGAGAAACAC+AGG | 0.587467 | 8.3:+16723512 | MS.gene033210:CDS |
| ACGTGAATGGCAGGGAAAAG+GGG | 0.590439 | 8.3:+16725228 | MS.gene033210:intron |
| GGTGAGAATGAATATGGGAA+AGG | 0.601558 | 8.3:-16722979 | None:intergenic |
| TTGAGGGTGAGAATGAATAT+GGG | 0.604046 | 8.3:-16722984 | None:intergenic |
| GAAGGAACCGACATTGAAGG+AGG | 0.606873 | 8.3:+16725252 | MS.gene033210:CDS |
| TGTGGGTTTGAGTTGAGAGA+AGG | 0.611992 | 8.3:-16722830 | None:intergenic |
| TGTTGGATGAACCAGTGTAA+AGG | 0.614019 | 8.3:-16722937 | None:intergenic |
| TTAGTGTTAATTGATTGTTG+AGG | 0.615795 | 8.3:-16723001 | None:intergenic |
| TGTGCCTTCTAATATTAACA+TGG | 0.616075 | 8.3:-16723222 | None:intergenic |
| ATCTATGAATGTTGGGAGTG+TGG | 0.617369 | 8.3:-16723170 | None:intergenic |
| TTTGGTGTGCAGTGGTTCTG+AGG | 0.623985 | 8.3:+16723702 | MS.gene033210:CDS |
| AATGATGGATATGTTTACAC+CGG | 0.626851 | 8.3:+16723427 | MS.gene033210:CDS |
| CCATGAAACAGAATATAACA+AGG | 0.635096 | 8.3:-16723308 | None:intergenic |
| AAGACAATTCGAATTTGGCG+AGG | 0.636015 | 8.3:+16723727 | MS.gene033210:CDS |
| CATTGAGTGCAGGAACAGGA+AGG | 0.646978 | 8.3:+16725313 | MS.gene033210:CDS |
| GTTTCCGATTTGGTGTGCAG+TGG | 0.647994 | 8.3:+16723694 | MS.gene033210:CDS |
| GAGATGAGACTGTGTCAACA+TGG | 0.652437 | 8.3:-16723264 | None:intergenic |
| TGTAGAATTTCAGAGTTGTG+AGG | 0.653037 | 8.3:-16722880 | None:intergenic |
| AAGGAACCGACATTGAAGGA+GGG | 0.655983 | 8.3:+16725253 | MS.gene033210:CDS |
| GGGACAGAACAATCAAGGTG+TGG | 0.660498 | 8.3:+16723329 | MS.gene033210:CDS |
| TGAGACTCATGAGAATAAAG+GGG | 0.664566 | 8.3:+16725287 | MS.gene033210:CDS |
| TTGTGAAGAAAGAGTACGTG+TGG | 0.685509 | 8.3:-16722789 | None:intergenic |
| TGAGAGAAGGAACTGATGCG+AGG | 0.688278 | 8.3:-16722817 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTTTATTTTTA+AGG | - | chr8.3:16724345-16724364 | None:intergenic | 0.0% |
| !! | AAAAAAATCATATGTTTAAA+TGG | - | chr8.3:16724437-16724456 | None:intergenic | 10.0% |
| !! | TAACTTAAATAAAAATTAAC+AGG | - | chr8.3:16724510-16724529 | None:intergenic | 10.0% |
| !! | AAAAAATGAAAATAAGTAAG+TGG | - | chr8.3:16724281-16724300 | None:intergenic | 15.0% |
| !! | ACATCCAATAATAATTAATA+AGG | + | chr8.3:16724905-16724924 | MS.gene033210:intron | 15.0% |
| !! | ATCAACAGATAAAAAAATTA+AGG | + | chr8.3:16723450-16723469 | MS.gene033210:CDS | 15.0% |
| !!! | AAACTTCTATTTTTGAATTT+GGG | + | chr8.3:16725137-16725156 | MS.gene033210:intron | 15.0% |
| !!! | TTAATTTTTTTTTTTACACG+AGG | + | chr8.3:16724877-16724896 | MS.gene033210:intron | 15.0% |
| !!! | TTATTTTTAAGGTTTTGTTT+GGG | - | chr8.3:16724334-16724353 | None:intergenic | 15.0% |
| !!! | TTTATTTTTAAGGTTTTGTT+TGG | - | chr8.3:16724335-16724354 | None:intergenic | 15.0% |
| !! | AAAAAAGATTGAGTACATAA+AGG | - | chr8.3:16724751-16724770 | None:intergenic | 20.0% |
| !! | AAAACCATGTTAATATTAGA+AGG | + | chr8.3:16723218-16723237 | MS.gene033210:CDS | 20.0% |
| !! | AAGAATTATGAAATTGTTGT+GGG | - | chr8.3:16722850-16722869 | None:intergenic | 20.0% |
| !! | ATACATAATATTAACCATCA+AGG | + | chr8.3:16724623-16724642 | MS.gene033210:intron | 20.0% |
| !! | CAGATAAAAAAATTAAGGTT+TGG | + | chr8.3:16723455-16723474 | MS.gene033210:CDS | 20.0% |
| !! | TACATAATATTAACCATCAA+GGG | + | chr8.3:16724624-16724643 | MS.gene033210:intron | 20.0% |
| !! | TATTCTTAACCGAATATATT+TGG | - | chr8.3:16724551-16724570 | None:intergenic | 20.0% |
| !! | TTCATAATACAAAATCTCTT+TGG | - | chr8.3:16724209-16724228 | None:intergenic | 20.0% |
| !!! | AATTTTTTTATCTGTTGATC+CGG | - | chr8.3:16723449-16723468 | None:intergenic | 20.0% |
| !!! | CATTGATTTGAAATTTGAAA+TGG | + | chr8.3:16725034-16725053 | MS.gene033210:intron | 20.0% |
| !!! | CTAATATTAACATGGTTTTT+CGG | - | chr8.3:16723217-16723236 | None:intergenic | 20.0% |
| !!! | GAAACTTCTATTTTTGAATT+TGG | + | chr8.3:16725136-16725155 | MS.gene033210:intron | 20.0% |
| !!! | TAATATTAACATGGTTTTTC+GGG | - | chr8.3:16723216-16723235 | None:intergenic | 20.0% |
| !!! | TTTTTACATTTCCTAAGTTT+TGG | - | chr8.3:16725115-16725134 | None:intergenic | 20.0% |
| ! | AAGGTTTGGAAGAAAAATAA+AGG | + | chr8.3:16723469-16723488 | MS.gene033210:CDS | 25.0% |
| ! | AATATTATGTATGTCTGCTT+TGG | - | chr8.3:16724615-16724634 | None:intergenic | 25.0% |
| ! | ACATAATATTAACCATCAAG+GGG | + | chr8.3:16724625-16724644 | MS.gene033210:intron | 25.0% |
| ! | AGATGCATTAAAAATGTCAA+TGG | + | chr8.3:16724698-16724717 | MS.gene033210:intron | 25.0% |
| ! | ATAAAAAAAGATGCTTCAGA+CGG | - | chr8.3:16723856-16723875 | None:intergenic | 25.0% |
| ! | ATAGAAGATATTGAGAGAAT+AGG | - | chr8.3:16724253-16724272 | None:intergenic | 25.0% |
| ! | CAGTAATTATTACATCGATA+CGG | + | chr8.3:16724046-16724065 | MS.gene033210:intron | 25.0% |
| ! | CCATATATAATATGACATCT+AGG | - | chr8.3:16724724-16724743 | None:intergenic | 25.0% |
| ! | CCTAGATGTCATATTATATA+TGG | + | chr8.3:16724721-16724740 | MS.gene033210:intron | 25.0% |
| ! | GAAGAATTATGAAATTGTTG+TGG | - | chr8.3:16722851-16722870 | None:intergenic | 25.0% |
| ! | TAGTGTTAATTGATTGTTGA+GGG | - | chr8.3:16723003-16723022 | None:intergenic | 25.0% |
| ! | TCAATATTGGTATCTGAAAA+AGG | + | chr8.3:16723601-16723620 | MS.gene033210:CDS | 25.0% |
| ! | TCCCCAAAATGATAAAAATT+CGG | - | chr8.3:16724931-16724950 | None:intergenic | 25.0% |
| ! | TTAGTGTTAATTGATTGTTG+AGG | - | chr8.3:16723004-16723023 | None:intergenic | 25.0% |
| !! | AATGGTAATTTGATAGTCAT+AGG | + | chr8.3:16723628-16723647 | MS.gene033210:CDS | 25.0% |
| !! | ACAAAATCTCTTTGGTTTAA+GGG | - | chr8.3:16724201-16724220 | None:intergenic | 25.0% |
| !! | ACATTTGTTAGTTGATACTT+TGG | + | chr8.3:16723501-16723520 | MS.gene033210:CDS | 25.0% |
| !! | AGAAAGAGTATAGACAATAT+GGG | - | chr8.3:16724088-16724107 | None:intergenic | 25.0% |
| !! | ATAGTTTGAGAGATTTTGAA+AGG | - | chr8.3:16724156-16724175 | None:intergenic | 25.0% |
| !! | ATATTGAGAGAATAGGATTT+TGG | - | chr8.3:16724246-16724265 | None:intergenic | 25.0% |
| !! | CTTGTTATATTCTGTTTCAT+GGG | + | chr8.3:16723309-16723328 | MS.gene033210:CDS | 25.0% |
| !! | TACAAAATCTCTTTGGTTTA+AGG | - | chr8.3:16724202-16724221 | None:intergenic | 25.0% |
| !! | TTTGAAATGGAAACAAGAAA+AGG | + | chr8.3:16725047-16725066 | MS.gene033210:intron | 25.0% |
| !!! | GTGTGGTAATTAACTTTTTT+TGG | - | chr8.3:16722775-16722794 | None:intergenic | 25.0% |
| !!! | TCGGCCTTATTAATTATTAT+TGG | - | chr8.3:16724912-16724931 | None:intergenic | 25.0% |
| AAATATACCGTTTACAGAAG+AGG | - | chr8.3:16723928-16723947 | None:intergenic | 30.0% | |
| AACACAATAGTATCTGGAAA+TGG | + | chr8.3:16723022-16723041 | MS.gene033210:CDS | 30.0% | |
| AACACTAACACAATAGTATC+TGG | + | chr8.3:16723016-16723035 | MS.gene033210:CDS | 30.0% | |
| AAGTTTGGACTGTGATATTA+AGG | + | chr8.3:16723885-16723904 | MS.gene033210:intron | 30.0% | |
| ACAATAGTTAGGCACTTAAT+TGG | - | chr8.3:16723814-16723833 | None:intergenic | 30.0% | |
| ACTGTATGTAAATATGGATG+TGG | - | chr8.3:16724995-16725014 | None:intergenic | 30.0% | |
| ACTTGATGTGTGAATACTAA+AGG | - | chr8.3:16724833-16724852 | None:intergenic | 30.0% | |
| AGAGATTGTATTCTTCTTTG+TGG | - | chr8.3:16724655-16724674 | None:intergenic | 30.0% | |
| AGGATAAGACAATTCGAATT+TGG | + | chr8.3:16723722-16723741 | MS.gene033210:CDS | 30.0% | |
| ATATCCTCTTTAACACTTGT+AGG | + | chr8.3:16722908-16722927 | MS.gene033210:CDS | 30.0% | |
| ATCCATATTTACATACAGTG+AGG | + | chr8.3:16724996-16725015 | MS.gene033210:intron | 30.0% | |
| ATCCTCACTGTATGTAAATA+TGG | - | chr8.3:16725001-16725020 | None:intergenic | 30.0% | |
| ATTTACATACAGTGAGGATT+TGG | + | chr8.3:16725002-16725021 | MS.gene033210:intron | 30.0% | |
| CAAGAAAAAAGACAAAATGC+TGG | - | chr8.3:16724810-16724829 | None:intergenic | 30.0% | |
| CACAAAGTCTATATTGTGTT+TGG | + | chr8.3:16723666-16723685 | MS.gene033210:CDS | 30.0% | |
| CCATGAAACAGAATATAACA+AGG | - | chr8.3:16723311-16723330 | None:intergenic | 30.0% | |
| GTATCTGAAAAAGGTGAAAA+TGG | + | chr8.3:16723610-16723629 | MS.gene033210:CDS | 30.0% | |
| TGAAACGATCTATGAATGTT+GGG | - | chr8.3:16723180-16723199 | None:intergenic | 30.0% | |
| TGCATGTGATAGATCAATAT+TGG | + | chr8.3:16723588-16723607 | MS.gene033210:CDS | 30.0% | |
| TGTGCCTTCTAATATTAACA+TGG | - | chr8.3:16723225-16723244 | None:intergenic | 30.0% | |
| TTGAGATTCGTTGTTGATAT+TGG | - | chr8.3:16723128-16723147 | None:intergenic | 30.0% | |
| ! | AGGCCGAATTTTTATCATTT+TGG | + | chr8.3:16724925-16724944 | MS.gene033210:intron | 30.0% |
| ! | CCTTGTTATATTCTGTTTCA+TGG | + | chr8.3:16723308-16723327 | MS.gene033210:CDS | 30.0% |
| ! | GAGAAAGAGTATAGACAATA+TGG | - | chr8.3:16724089-16724108 | None:intergenic | 30.0% |
| ! | GCCGAATTTTTATCATTTTG+GGG | + | chr8.3:16724927-16724946 | MS.gene033210:intron | 30.0% |
| ! | GGCCGAATTTTTATCATTTT+GGG | + | chr8.3:16724926-16724945 | MS.gene033210:intron | 30.0% |
| ! | TTTTATCTACAGTGGAAGTT+TGG | + | chr8.3:16723870-16723889 | MS.gene033210:intron | 30.0% |
| ! | TTTTCCTACAAGTGTTAAAG+AGG | - | chr8.3:16722915-16722934 | None:intergenic | 30.0% |
| ! | TTTTGTTCCTCTTCTGTAAA+CGG | + | chr8.3:16723918-16723937 | MS.gene033210:intron | 30.0% |
| !! | AATGATGGATATGTTTACAC+CGG | + | chr8.3:16723427-16723446 | MS.gene033210:CDS | 30.0% |
| !! | TACTTGTTAGCAAAGTATTG+AGG | + | chr8.3:16724013-16724032 | MS.gene033210:intron | 30.0% |
| !!! | GCATCTTTTTTTATCTACAG+TGG | + | chr8.3:16723862-16723881 | MS.gene033210:intron | 30.0% |
| !!! | GTATTGTTGTTTGAGTGTTT+TGG | + | chr8.3:16723774-16723793 | MS.gene033210:intron | 30.0% |
| AAGATAACAAAATCCGCGTT+TGG | + | chr8.3:16723095-16723114 | MS.gene033210:CDS | 35.0% | |
| AAGGCACAAAAAATGCACAT+GGG | + | chr8.3:16723237-16723256 | MS.gene033210:CDS | 35.0% | |
| ACTACACACAACCAAAACTT+AGG | + | chr8.3:16725101-16725120 | MS.gene033210:intron | 35.0% | |
| AGGAGGAAAAGAAGAATCAA+AGG | + | chr8.3:16725067-16725086 | MS.gene033210:intron | 35.0% | |
| AGTGATCAAGCACAATAGTT+AGG | - | chr8.3:16723825-16723844 | None:intergenic | 35.0% | |
| ATTATGTATGTCTGCTTTGG+TGG | - | chr8.3:16724612-16724631 | None:intergenic | 35.0% | |
| CAAGGTTCCATCTTTAGATA+AGG | - | chr8.3:16723293-16723312 | None:intergenic | 35.0% | |
| CTTGTCTGAATGAACTACAA+TGG | - | chr8.3:16723059-16723078 | None:intergenic | 35.0% | |
| GAAAAAAGACAAAATGCTGG+AGG | - | chr8.3:16724807-16724826 | None:intergenic | 35.0% | |
| GAAATGGAAACAAGAAAAGG+AGG | + | chr8.3:16725050-16725069 | MS.gene033210:intron | 35.0% | |
| GCAATCACAGTTTCTAATGA+TGG | + | chr8.3:16723412-16723431 | MS.gene033210:CDS | 35.0% | |
| GCATGTACTAGTAAAATGGA+AGG | + | chr8.3:16724408-16724427 | MS.gene033210:intron | 35.0% | |
| GTAGGAAAATTCCTTTACAC+TGG | + | chr8.3:16722926-16722945 | MS.gene033210:CDS | 35.0% | |
| GTCTGCATGTACTAGTAAAA+TGG | + | chr8.3:16724404-16724423 | MS.gene033210:intron | 35.0% | |
| GTGAAACGATCTATGAATGT+TGG | - | chr8.3:16723181-16723200 | None:intergenic | 35.0% | |
| GTGAGACTCATGAGAATAAA+GGG | + | chr8.3:16725286-16725305 | MS.gene033210:CDS | 35.0% | |
| GTGAGCAGACCAAATATATT+CGG | + | chr8.3:16724539-16724558 | MS.gene033210:intron | 35.0% | |
| TCTCTTGCCTTATCTAAAGA+TGG | + | chr8.3:16723283-16723302 | MS.gene033210:CDS | 35.0% | |
| TGAGACTCATGAGAATAAAG+GGG | + | chr8.3:16725287-16725306 | MS.gene033210:CDS | 35.0% | |
| TGGACTGTGATATTAAGGTT+TGG | + | chr8.3:16723890-16723909 | MS.gene033210:intron | 35.0% | |
| TGTAGAATTTCAGAGTTGTG+AGG | - | chr8.3:16722883-16722902 | None:intergenic | 35.0% | |
| TTGAGGGTGAGAATGAATAT+GGG | - | chr8.3:16722987-16723006 | None:intergenic | 35.0% | |
| ! | TTGAGAGAATAGGATTTTGG+AGG | - | chr8.3:16724243-16724262 | None:intergenic | 35.0% |
| ! | TTGATACTTTGGAGAAACAC+AGG | + | chr8.3:16723512-16723531 | MS.gene033210:CDS | 35.0% |
| !! | GATGGTTCTGTTTTGTATTC+TGG | + | chr8.3:16723565-16723584 | MS.gene033210:CDS | 35.0% |
| !! | TATTGGTGATTTTCCAAACG+CGG | - | chr8.3:16723111-16723130 | None:intergenic | 35.0% |
| !! | TGTTGTTTGAGTGTTTTGGA+AGG | + | chr8.3:16723778-16723797 | MS.gene033210:intron | 35.0% |
| !!! | GTTGTTTGAGTGTTTTGGAA+GGG | + | chr8.3:16723779-16723798 | MS.gene033210:intron | 35.0% |
| !!! | GTTTTGTTTGGGAGTTTGAA+GGG | - | chr8.3:16724323-16724342 | None:intergenic | 35.0% |
| AACCAAAGACTTCACGTGTT+TGG | + | chr8.3:16723354-16723373 | MS.gene033210:CDS | 40.0% | |
| AAGACAATTCGAATTTGGCG+AGG | + | chr8.3:16723727-16723746 | MS.gene033210:CDS | 40.0% | |
| AATCTTGATACGTGAATGGC+AGG | + | chr8.3:16725219-16725238 | MS.gene033210:intron | 40.0% | |
| ACCCAATCTTGATACGTGAA+TGG | + | chr8.3:16725215-16725234 | MS.gene033210:intron | 40.0% | |
| AGTAGTAGCAGCTTCATCTA+TGG | - | chr8.3:16725184-16725203 | None:intergenic | 40.0% | |
| ATCTATGAATGTTGGGAGTG+TGG | - | chr8.3:16723173-16723192 | None:intergenic | 40.0% | |
| ATCTTGATACGTGAATGGCA+GGG | + | chr8.3:16725220-16725239 | MS.gene033210:intron | 40.0% | |
| ATTCACGTATCAAGATTGGG+TGG | - | chr8.3:16725216-16725235 | None:intergenic | 40.0% | |
| GCCATTCACGTATCAAGATT+GGG | - | chr8.3:16725219-16725238 | None:intergenic | 40.0% | |
| GGAAGAAGATGAACAAGTAG+AGG | - | chr8.3:16724786-16724805 | None:intergenic | 40.0% | |
| GGTGAGAATGAATATGGGAA+AGG | - | chr8.3:16722982-16723001 | None:intergenic | 40.0% | |
| GGTGAGACTCATGAGAATAA+AGG | + | chr8.3:16725285-16725304 | MS.gene033210:CDS | 40.0% | |
| GTCTATATTGTGTTTGGCTG+TGG | + | chr8.3:16723672-16723691 | MS.gene033210:CDS | 40.0% | |
| GTTATTAGAGTCGTTGCTGA+AGG | - | chr8.3:16722750-16722769 | None:intergenic | 40.0% | |
| GTTGAGGGTGAGAATGAATA+TGG | - | chr8.3:16722988-16723007 | None:intergenic | 40.0% | |
| TGCCATTCACGTATCAAGAT+TGG | - | chr8.3:16725220-16725239 | None:intergenic | 40.0% | |
| TGTTGGATGAACCAGTGTAA+AGG | - | chr8.3:16722940-16722959 | None:intergenic | 40.0% | |
| TTCATGGGACAGAACAATCA+AGG | + | chr8.3:16723324-16723343 | MS.gene033210:CDS | 40.0% | |
| TTCCAAACACGTGAAGTCTT+TGG | - | chr8.3:16723359-16723378 | None:intergenic | 40.0% | |
| ! | AGACTTCACGTGTTTGGAAT+CGG | + | chr8.3:16723360-16723379 | MS.gene033210:CDS | 40.0% |
| ! | GAAGGCACAAAAAATGCACA+TGG | + | chr8.3:16723236-16723255 | MS.gene033210:CDS | 40.0% |
| ! | TTGTGAAGAAAGAGTACGTG+TGG | - | chr8.3:16722792-16722811 | None:intergenic | 40.0% |
| !!! | AGTGTTTTGGAAGGGCATAA+AGG | + | chr8.3:16723787-16723806 | MS.gene033210:intron | 40.0% |
| !!! | GGTTTTGTTTGGGAGTTTGA+AGG | - | chr8.3:16724324-16724343 | None:intergenic | 40.0% |
| !!! | TAACATGGTTTTTCGGGATG+AGG | - | chr8.3:16723210-16723229 | None:intergenic | 40.0% |
| AAAGGGGAAACATTGAGTGC+AGG | + | chr8.3:16725303-16725322 | MS.gene033210:CDS | 45.0% | |
| AAGGAACCGACATTGAAGGA+GGG | + | chr8.3:16725253-16725272 | MS.gene033210:CDS | 45.0% | |
| AGAACCACTGCACACCAAAT+CGG | - | chr8.3:16723701-16723720 | None:intergenic | 45.0% | |
| AGTAGCAGCTTCATCTATGG+AGG | - | chr8.3:16725181-16725200 | None:intergenic | 45.0% | |
| ATACGTGAATGGCAGGGAAA+AGG | + | chr8.3:16725226-16725245 | MS.gene033210:intron | 45.0% | |
| ATAGTCATAGGTGCTCTTCG+TGG | + | chr8.3:16723640-16723659 | MS.gene033210:CDS | 45.0% | |
| ATTGAAGGAGGGAGACAAAC+AGG | + | chr8.3:16725264-16725283 | MS.gene033210:CDS | 45.0% | |
| CCAACACAGAAGTCACATCA+TGG | + | chr8.3:16722954-16722973 | MS.gene033210:CDS | 45.0% | |
| CCATGATGTGACTTCTGTGT+TGG | - | chr8.3:16722957-16722976 | None:intergenic | 45.0% | |
| CTTTGCTAACAAGTACCCTG+AGG | - | chr8.3:16724008-16724027 | None:intergenic | 45.0% | |
| CTTTGTGGATTTCCCCTTGA+TGG | - | chr8.3:16724640-16724659 | None:intergenic | 45.0% | |
| GAAACATTGAGTGCAGGAAC+AGG | + | chr8.3:16725309-16725328 | MS.gene033210:CDS | 45.0% | |
| GAGATGAGACTGTGTCAACA+TGG | - | chr8.3:16723267-16723286 | None:intergenic | 45.0% | |
| TAACAAGTACCCTGAGGAGA+TGG | - | chr8.3:16724002-16724021 | None:intergenic | 45.0% | |
| TACGTGAATGGCAGGGAAAA+GGG | + | chr8.3:16725227-16725246 | MS.gene033210:intron | 45.0% | |
| TACTAGTACATGCAGACTCG+AGG | - | chr8.3:16724401-16724420 | None:intergenic | 45.0% | |
| TCAATACTGCCATCTCCTCA+GGG | + | chr8.3:16723990-16724009 | MS.gene033210:intron | 45.0% | |
| TTGTCTCCCTCCTTCAATGT+CGG | - | chr8.3:16725262-16725281 | None:intergenic | 45.0% | |
| TTTGGCTGTGGTTTCCGATT+TGG | + | chr8.3:16723684-16723703 | MS.gene033210:CDS | 45.0% | |
| ! | ACTTTGGAGAAACACAGGTC+TGG | + | chr8.3:16723517-16723536 | MS.gene033210:CDS | 45.0% |
| ! | ATGTTGGGAGTGTGGCTAAA+TGG | - | chr8.3:16723165-16723184 | None:intergenic | 45.0% |
| ! | CAGGTCTGGGATTAATGCAT+TGG | + | chr8.3:16723531-16723550 | MS.gene033210:CDS | 45.0% |
| ! | CTTTGGAGAAACACAGGTCT+GGG | + | chr8.3:16723518-16723537 | MS.gene033210:CDS | 45.0% |
| ! | TGTTGGGAGTGTGGCTAAAT+GGG | - | chr8.3:16723164-16723183 | None:intergenic | 45.0% |
| !! | GCATTGGCTCTTAACAGTGA+TGG | + | chr8.3:16723547-16723566 | MS.gene033210:CDS | 45.0% |
| !! | TGTGGGTTTGAGTTGAGAGA+AGG | - | chr8.3:16722833-16722852 | None:intergenic | 45.0% |
| !!! | ATAAAAAAAAAATAATGTTT+TGG | + | chr8.3:16724350-16724369 | MS.gene033210:intron | 5.0% |
| ACGTGAATGGCAGGGAAAAG+GGG | + | chr8.3:16725228-16725247 | MS.gene033210:intron | 50.0% | |
| CAGAGTTGTGAGGCATGTGA+AGG | - | chr8.3:16722873-16722892 | None:intergenic | 50.0% | |
| CATTGAGTGCAGGAACAGGA+AGG | + | chr8.3:16725313-16725332 | MS.gene033210:CDS | 50.0% | |
| CGGGTTCGTACACTAGTTGT+AGG | - | chr8.3:16724466-16724485 | None:intergenic | 50.0% | |
| CTCAATACTGCCATCTCCTC+AGG | + | chr8.3:16723989-16724008 | MS.gene033210:intron | 50.0% | |
| GAAGGAACCGACATTGAAGG+AGG | + | chr8.3:16725252-16725271 | MS.gene033210:CDS | 50.0% | |
| GGGACAGAACAATCAAGGTG+TGG | + | chr8.3:16723329-16723348 | MS.gene033210:CDS | 50.0% | |
| GGTGAAGGAACCGACATTGA+AGG | + | chr8.3:16725249-16725268 | MS.gene033210:CDS | 50.0% | |
| TCGAGGTTGTCGAGACAAAC+AGG | - | chr8.3:16724384-16724403 | None:intergenic | 50.0% | |
| TGAGAGAAGGAACTGATGCG+AGG | - | chr8.3:16722820-16722839 | None:intergenic | 50.0% | |
| ! | TTTGGTGTGCAGTGGTTCTG+AGG | + | chr8.3:16723702-16723721 | MS.gene033210:CDS | 50.0% |
| !! | GTTTCCGATTTGGTGTGCAG+TGG | + | chr8.3:16723694-16723713 | MS.gene033210:CDS | 50.0% |
| ATGGCAGGGAAAAGGGGTGA+AGG | + | chr8.3:16725234-16725253 | MS.gene033210:intron | 55.0% | |
| TATTCCAGCCGTGCGTTGCA+CGG | - | chr8.3:16724486-16724505 | None:intergenic | 55.0% | |
| ATTCCAGCCGTGCGTTGCAC+GGG | - | chr8.3:16724485-16724504 | None:intergenic | 60.0% | |
| GTACGAACCCGTGCAACGCA+CGG | + | chr8.3:16724475-16724494 | MS.gene033210:intron | 60.0% | |
| GAACCCGTGCAACGCACGGC+TGG | + | chr8.3:16724479-16724498 | MS.gene033210:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16722731 | 16725338 | 16722731 | ID=MS.gene033210 |
| chr8.3 | mRNA | 16722731 | 16725338 | 16722731 | ID=MS.gene033210.t1;Parent=MS.gene033210 |
| chr8.3 | exon | 16722731 | 16723748 | 16722731 | ID=MS.gene033210.t1.exon1;Parent=MS.gene033210.t1 |
| chr8.3 | CDS | 16722731 | 16723748 | 16722731 | ID=cds.MS.gene033210.t1;Parent=MS.gene033210.t1 |
| chr8.3 | exon | 16725241 | 16725338 | 16725241 | ID=MS.gene033210.t1.exon2;Parent=MS.gene033210.t1 |
| chr8.3 | CDS | 16725241 | 16725338 | 16725241 | ID=cds.MS.gene033210.t1;Parent=MS.gene033210.t1 |
| Gene Sequence |
| Protein sequence |
