Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034845.t1 | XP_013467964.1 | 98.7 | 305 | 4 | 0 | 1 | 305 | 1 | 305 | 1.30E-148 | 535.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034845.t1 | Q8VYD8 | 69.5 | 302 | 85 | 3 | 10 | 305 | 15 | 315 | 1.3e-91 | 337.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034845.t1 | A0A072VK52 | 98.7 | 305 | 4 | 0 | 1 | 305 | 1 | 305 | 9.4e-149 | 535.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034845 | MS.gene78047 | PPI |
| MS.gene034845 | MS.gene045698 | PPI |
| MS.gene034845 | MS.gene77754 | PPI |
| MS.gene034845 | MS.gene75750 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034845.t1 | MTR_1g059670 | 98.689 | 305 | 4 | 0 | 1 | 305 | 1 | 305 | 0.0 | 617 |
| MS.gene034845.t1 | MTR_4g035650 | 69.231 | 247 | 74 | 1 | 59 | 305 | 68 | 312 | 1.49e-124 | 358 |
| MS.gene034845.t1 | MTR_4g035650 | 68.016 | 247 | 75 | 2 | 59 | 305 | 68 | 310 | 9.72e-121 | 349 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034845.t1 | AT5G06130 | 68.647 | 303 | 76 | 3 | 6 | 305 | 29 | 315 | 8.74e-144 | 407 |
| MS.gene034845.t1 | AT5G06130 | 77.155 | 232 | 52 | 1 | 74 | 305 | 1 | 231 | 1.34e-129 | 368 |
| MS.gene034845.t1 | AT5G61670 | 69.880 | 249 | 73 | 1 | 57 | 305 | 61 | 307 | 5.50e-125 | 359 |
| MS.gene034845.t1 | AT5G61670 | 69.880 | 249 | 73 | 1 | 57 | 305 | 61 | 307 | 5.50e-125 | 359 |
Find 66 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAAAATCTTTCTTCTTA+TGG | 0.155230 | 1.4:+48703891 | MS.gene034845:CDS |
| ATATCTGCAATAATTGTATT+TGG | 0.197063 | 1.4:+48704808 | MS.gene034845:CDS |
| ATGGCAGCTGGAGCTGAAAT+TGG | 0.211679 | 1.4:+48706076 | MS.gene034845:intron |
| GGAATAGATGATGGAATTTC+CGG | 0.218058 | 1.4:-48704416 | None:intergenic |
| TTTGAACATTAATCCGATTT+CGG | 0.296746 | 1.4:+48706572 | MS.gene034845:CDS |
| TTTCCAGCACCAGAGCAATT+TGG | 0.301546 | 1.4:-48706645 | None:intergenic |
| TTTAAAAGGGGCAAAGAAAA+TGG | 0.310012 | 1.4:-48703592 | None:intergenic |
| TGCATTTGCCTTTGCAACTA+AGG | 0.340206 | 1.4:+48706138 | MS.gene034845:CDS |
| TAACTTTGGTGTGATTTCAT+TGG | 0.363903 | 1.4:-48703685 | None:intergenic |
| CCCGAAAAGGATGCCACAAT+TGG | 0.377796 | 1.4:-48706301 | None:intergenic |
| TGTCCAACCTGCCTTTGCAC+TGG | 0.394247 | 1.4:+48706774 | MS.gene034845:CDS |
| ATTAATCCGATTTCGGCATC+TGG | 0.402233 | 1.4:+48706579 | MS.gene034845:CDS |
| GAAGGAGAGAAAGTATTCAT+TGG | 0.405939 | 1.4:-48703531 | None:intergenic |
| TTGAAGAAGCTCTATCTAAC+AGG | 0.406814 | 1.4:+48704775 | MS.gene034845:CDS |
| ACAAAATCCTGAACCGTCTC+TGG | 0.410773 | 1.4:-48703823 | None:intergenic |
| TGAAGGGCCAGAGACGGTTC+AGG | 0.418010 | 1.4:+48703816 | MS.gene034845:CDS |
| TTTGGACACCTTGTCGTTGT+AGG | 0.425866 | 1.4:-48706627 | None:intergenic |
| CTCACCACATGAGGAAGAAA+AGG | 0.428649 | 1.4:-48704437 | None:intergenic |
| GAAGTACCAGATGCCGAAAT+CGG | 0.441052 | 1.4:-48706585 | None:intergenic |
| TTCAGTACTGATGTTAATTG+AGG | 0.445259 | 1.4:+48706342 | MS.gene034845:CDS |
| TGTCCAAATTGCTCTGGTGC+TGG | 0.448257 | 1.4:+48706642 | MS.gene034845:CDS |
| TAGAGCTTCTTCAAAGTGTT+GGG | 0.450361 | 1.4:-48704766 | None:intergenic |
| CTGGAGCTGAAATTGGGTAT+AGG | 0.452466 | 1.4:+48706083 | MS.gene034845:CDS |
| AGTCAAATGGATCAATTCTC+AGG | 0.456133 | 1.4:-48706821 | None:intergenic |
| AATCTTTCTTCTTATGGAAG+AGG | 0.457917 | 1.4:+48703897 | MS.gene034845:CDS |
| TGCTCTTCTCCACAGGATGC+AGG | 0.457995 | 1.4:+48703660 | MS.gene034845:CDS |
| TGCAAGTATTGCCTTGGAAC+TGG | 0.458275 | 1.4:+48706397 | MS.gene034845:CDS |
| TACTTCTGTTAGACCCCTGC+AGG | 0.461988 | 1.4:+48706602 | MS.gene034845:CDS |
| CATGTAAAGAATTAGTCAAA+TGG | 0.467029 | 1.4:-48706834 | None:intergenic |
| ATAGAGCTTCTTCAAAGTGT+TGG | 0.477201 | 1.4:-48704767 | None:intergenic |
| CTGCAATAATTGTATTTGGC+GGG | 0.477772 | 1.4:+48704812 | MS.gene034845:CDS |
| CAGGTTACTTGGCTTGCGCT+CGG | 0.481171 | 1.4:+48706529 | MS.gene034845:intron |
| GTCCAACCTGCCTTTGCACT+GGG | 0.482552 | 1.4:+48706775 | MS.gene034845:CDS |
| GCCAACTGCTCCACCCGAAA+AGG | 0.487934 | 1.4:-48706314 | None:intergenic |
| TGGCAGCTGGAGCTGAAATT+GGG | 0.494726 | 1.4:+48706077 | MS.gene034845:intron |
| GGAAGAAAAGGAATAGATGA+TGG | 0.501221 | 1.4:-48704425 | None:intergenic |
| TTGTCGTTGTAGGAACCTGC+AGG | 0.508146 | 1.4:-48706617 | None:intergenic |
| TATAGGTGGTACGTCATATG+AGG | 0.517667 | 1.4:+48706100 | MS.gene034845:CDS |
| CCGAAAAGGATGCCACAATT+GGG | 0.520908 | 1.4:-48706300 | None:intergenic |
| ACAAGGTGCAAGTATTGCCT+TGG | 0.523158 | 1.4:+48706391 | MS.gene034845:CDS |
| TAAGGTAGAATTGTGGAGGA+AGG | 0.527472 | 1.4:-48703549 | None:intergenic |
| TGCGCTCGGTGTTCCACAAG+TGG | 0.528281 | 1.4:+48706543 | MS.gene034845:CDS |
| AATTGCGTGCTCTTCTCCAC+AGG | 0.533626 | 1.4:+48703653 | MS.gene034845:CDS |
| ACAAGGTGTCCAAATTGCTC+TGG | 0.537901 | 1.4:+48706636 | MS.gene034845:CDS |
| GTTCAAACATACACCACTTG+TGG | 0.537962 | 1.4:-48706556 | None:intergenic |
| CTTCATCCCAGTGCAAAGGC+AGG | 0.549940 | 1.4:-48706781 | None:intergenic |
| AAATTGCTCTGGTGCTGGAA+AGG | 0.553692 | 1.4:+48706647 | MS.gene034845:CDS |
| GGAAGATGCAAATGAGATGC+CGG | 0.556353 | 1.4:+48704397 | MS.gene034845:CDS |
| TCTGCAATAATTGTATTTGG+CGG | 0.560108 | 1.4:+48704811 | MS.gene034845:CDS |
| GGAGATTGCGTGTGCAGCAG+CGG | 0.563072 | 1.4:+48704336 | MS.gene034845:CDS |
| ATAGCATACCTTAGTTGCAA+AGG | 0.566228 | 1.4:-48706146 | None:intergenic |
| ATCCCAGTGCAAAGGCAGGT+TGG | 0.571963 | 1.4:-48706777 | None:intergenic |
| TGTCGTTGTAGGAACCTGCA+GGG | 0.577519 | 1.4:-48706616 | None:intergenic |
| CATTATTGAAGGGCCAGAGA+CGG | 0.585450 | 1.4:+48703810 | MS.gene034845:CDS |
| AGGGTAAGGTAGAATTGTGG+AGG | 0.586801 | 1.4:-48703553 | None:intergenic |
| CAGTCAAGTTGACCCAATTG+TGG | 0.589524 | 1.4:+48706288 | MS.gene034845:intron |
| TGAAGGGTAAGGTAGAATTG+TGG | 0.598098 | 1.4:-48703556 | None:intergenic |
| CCTTTGCACTGGGATGAAGA+TGG | 0.608589 | 1.4:+48706785 | MS.gene034845:CDS |
| TCATTGGAGCCTGCATCCTG+TGG | 0.609087 | 1.4:-48703669 | None:intergenic |
| GAGCTGAAATTGGGTATAGG+TGG | 0.611943 | 1.4:+48706086 | MS.gene034845:CDS |
| TGGCGGGCTTATTGCACCGA+CGG | 0.621713 | 1.4:+48704828 | MS.gene034845:CDS |
| CCATCTTCATCCCAGTGCAA+AGG | 0.623251 | 1.4:-48706785 | None:intergenic |
| TTGAGCAACAAGAGAAAACA+AGG | 0.624269 | 1.4:+48706374 | MS.gene034845:CDS |
| GTAGAAACATACCAGTTCCA+AGG | 0.632023 | 1.4:-48706408 | None:intergenic |
| GTCGTTGTAGGAACCTGCAG+GGG | 0.684640 | 1.4:-48706615 | None:intergenic |
| TGCAGGTTCCTACAACGACA+AGG | 0.684689 | 1.4:+48706619 | MS.gene034845:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGACAATTTAAATTT+TGG | + | chr1.4:48705240-48705259 | MS.gene034845:intron | 10.0% |
| !!! | ATATTAAATCCTTATTTTAA+TGG | + | chr1.4:48706057-48706076 | MS.gene034845:intron | 10.0% |
| !!! | ATTTTGACAATTTAAATTTT+GGG | + | chr1.4:48705241-48705260 | MS.gene034845:intron | 10.0% |
| !! | AATTATAGAAAATAGCATAA+AGG | - | chr1.4:48705371-48705390 | None:intergenic | 15.0% |
| !! | ATTATAGAAAATAGCATAAA+GGG | - | chr1.4:48705370-48705389 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTTTTGCTTATT+GGG | + | chr1.4:48703707-48703726 | MS.gene034845:intron | 15.0% |
| !!! | ATAAAAAGTTTTTGAAATCA+AGG | - | chr1.4:48705461-48705480 | None:intergenic | 15.0% |
| !!! | TAGTTTTTTTTTTTGCTTAT+TGG | + | chr1.4:48703706-48703725 | MS.gene034845:intron | 15.0% |
| !!! | TTATTTACCTTTAATTTAAG+TGG | + | chr1.4:48705949-48705968 | MS.gene034845:intron | 15.0% |
| !!! | TTTGAAGAATTTAAAATTCT+AGG | + | chr1.4:48705705-48705724 | MS.gene034845:intron | 15.0% |
| !!! | TTTTGAATAACTTATGAAAA+CGG | - | chr1.4:48704189-48704208 | None:intergenic | 15.0% |
| !!! | TTTTGACAATTTAAATTTTG+GGG | + | chr1.4:48705242-48705261 | MS.gene034845:intron | 15.0% |
| !! | AACATAGTGATACTTAATAA+GGG | - | chr1.4:48704975-48704994 | None:intergenic | 20.0% |
| !! | AACTTACTATAAGATATAAG+CGG | - | chr1.4:48704267-48704286 | None:intergenic | 20.0% |
| !! | AATAATCATCCTAAATTACT+TGG | + | chr1.4:48704887-48704906 | MS.gene034845:intron | 20.0% |
| !! | AATTAAACAGTTGCATATAT+CGG | - | chr1.4:48706692-48706711 | None:intergenic | 20.0% |
| !! | ATAATCATCCTAAATTACTT+GGG | + | chr1.4:48704888-48704907 | MS.gene034845:intron | 20.0% |
| !! | ATATCTGCAATAATTGTATT+TGG | + | chr1.4:48704808-48704827 | MS.gene034845:CDS | 20.0% |
| !! | ATTAGTAGTACATAAAGTAT+AGG | + | chr1.4:48705388-48705407 | MS.gene034845:intron | 20.0% |
| !! | ATTTCTTTCTTTCTGATAAA+CGG | - | chr1.4:48706202-48706221 | None:intergenic | 20.0% |
| !! | CAATAAAATCTTTCTTCTTA+TGG | + | chr1.4:48703891-48703910 | MS.gene034845:CDS | 20.0% |
| !! | GCAAAAAAAAAAACTAACTT+TGG | - | chr1.4:48703702-48703721 | None:intergenic | 20.0% |
| !! | TAACATAGTGATACTTAATA+AGG | - | chr1.4:48704976-48704995 | None:intergenic | 20.0% |
| !! | TAGTTTAAATAAGACACTTA+AGG | + | chr1.4:48704561-48704580 | MS.gene034845:intron | 20.0% |
| !! | TTGACTTAGAAAAAGAAAAT+TGG | - | chr1.4:48703629-48703648 | None:intergenic | 20.0% |
| !!! | AAATTTGTAATTTTATGGAC+AGG | + | chr1.4:48706510-48706529 | MS.gene034845:intron | 20.0% |
| !!! | AATTTTCTTTTTCTAAGTCA+AGG | + | chr1.4:48703628-48703647 | MS.gene034845:CDS | 20.0% |
| !!! | ATGTTAGTGATTAATTTGTT+AGG | + | chr1.4:48705495-48705514 | MS.gene034845:intron | 20.0% |
| !!! | GTCAATTTTCATTCATATTA+TGG | + | chr1.4:48703953-48703972 | MS.gene034845:intron | 20.0% |
| ! | ACTTACTATAAGATATAAGC+GGG | - | chr1.4:48704266-48704285 | None:intergenic | 25.0% |
| ! | AGTACTTAAAGATATTGGTA+TGG | - | chr1.4:48704513-48704532 | None:intergenic | 25.0% |
| ! | ATACTTAATAAGGGTAACAA+AGG | - | chr1.4:48704966-48704985 | None:intergenic | 25.0% |
| ! | CAAAATTTAAACTTTGCAAC+TGG | + | chr1.4:48703746-48703765 | MS.gene034845:intron | 25.0% |
| ! | CACTATGTTAAGTTTAAATC+TGG | + | chr1.4:48704986-48705005 | MS.gene034845:intron | 25.0% |
| ! | CTTAGAAAAAGAAAATTGGT+TGG | - | chr1.4:48703625-48703644 | None:intergenic | 25.0% |
| ! | GTAAATAAATGTGAGTGAAT+AGG | - | chr1.4:48705937-48705956 | None:intergenic | 25.0% |
| ! | TAAGACAATAAAATTACCGT+CGG | - | chr1.4:48704847-48704866 | None:intergenic | 25.0% |
| ! | TCTTCAGTACTTAAAGATAT+TGG | - | chr1.4:48704518-48704537 | None:intergenic | 25.0% |
| ! | TTTGAACATTAATCCGATTT+CGG | + | chr1.4:48706572-48706591 | MS.gene034845:CDS | 25.0% |
| !! | ATCTTTTAATCATTTGCTCT+TGG | - | chr1.4:48705331-48705350 | None:intergenic | 25.0% |
| !! | CAATTCTAGAAAGAATAGAA+AGG | - | chr1.4:48706479-48706498 | None:intergenic | 25.0% |
| !! | GTCTTATCATTTAAGATGAA+AGG | - | chr1.4:48705180-48705199 | None:intergenic | 25.0% |
| !! | GTTTTCATGTAACTTATAAG+CGG | + | chr1.4:48704088-48704107 | MS.gene034845:intron | 25.0% |
| !! | TTTGAAATGAATGTAGATCA+TGG | - | chr1.4:48706038-48706057 | None:intergenic | 25.0% |
| !!! | ACAATTTTGAGAATGGATAA+AGG | + | chr1.4:48705198-48705217 | MS.gene034845:intron | 25.0% |
| !!! | CAATTTTGAGAATGGATAAA+GGG | + | chr1.4:48705199-48705218 | MS.gene034845:intron | 25.0% |
| !!! | GTCATATGTGTTTTTTGTTT+AGG | + | chr1.4:48706746-48706765 | MS.gene034845:intron | 25.0% |
| !!! | TGATAAGACAATTTTGAGAA+TGG | + | chr1.4:48705191-48705210 | MS.gene034845:intron | 25.0% |
| AATCAGTAGCAAACTATAGT+AGG | - | chr1.4:48705095-48705114 | None:intergenic | 30.0% | |
| AATCTTTCTTCTTATGGAAG+AGG | + | chr1.4:48703897-48703916 | MS.gene034845:CDS | 30.0% | |
| AGGAACTTTGTAAAATGAGA+GGG | + | chr1.4:48705408-48705427 | MS.gene034845:intron | 30.0% | |
| CCAATAGCTTAATCAAAACA+AGG | - | chr1.4:48704471-48704490 | None:intergenic | 30.0% | |
| GAGGAAATGTAATGTTATGA+GGG | - | chr1.4:48705756-48705775 | None:intergenic | 30.0% | |
| GGAAATGTAATGTAATGTTG+AGG | - | chr1.4:48705775-48705794 | None:intergenic | 30.0% | |
| TAAAGTGAGAATTAAACCCA+AGG | - | chr1.4:48705039-48705058 | None:intergenic | 30.0% | |
| TACGAGACCACTTAAATTAA+AGG | - | chr1.4:48705959-48705978 | None:intergenic | 30.0% | |
| TAGGAACTTTGTAAAATGAG+AGG | + | chr1.4:48705407-48705426 | MS.gene034845:intron | 30.0% | |
| TCTGCAATAATTGTATTTGG+CGG | + | chr1.4:48704811-48704830 | MS.gene034845:CDS | 30.0% | |
| TGACTAATGAGAAATGAGTA+TGG | + | chr1.4:48704306-48704325 | MS.gene034845:intron | 30.0% | |
| TGAGGAAATGTAATGTTATG+AGG | - | chr1.4:48705757-48705776 | None:intergenic | 30.0% | |
| TGTTAAGTTTAAATCTGGCT+TGG | + | chr1.4:48704991-48705010 | MS.gene034845:intron | 30.0% | |
| TTAATCATTTGCTCTTGGAA+AGG | - | chr1.4:48705326-48705345 | None:intergenic | 30.0% | |
| TTCGATAGATGAGAAACAAA+AGG | - | chr1.4:48704668-48704687 | None:intergenic | 30.0% | |
| TTTAAAAGGGGCAAAGAAAA+TGG | - | chr1.4:48703595-48703614 | None:intergenic | 30.0% | |
| ! | AATTTTATGGACAGGTTACT+TGG | + | chr1.4:48706518-48706537 | MS.gene034845:intron | 30.0% |
| ! | AGAGAAATTTAGAGTGTGTT+TGG | + | chr1.4:48705664-48705683 | MS.gene034845:intron | 30.0% |
| ! | AGCAACTTTTGCATTATTGA+AGG | + | chr1.4:48703799-48703818 | MS.gene034845:intron | 30.0% |
| ! | ATTTTCTTTGCCCCTTTTAA+AGG | + | chr1.4:48703594-48703613 | MS.gene034845:CDS | 30.0% |
| ! | GATAAAAGTATGAGTCAACA+TGG | - | chr1.4:48705062-48705081 | None:intergenic | 30.0% |
| ! | GCAACTTTTGCATTATTGAA+GGG | + | chr1.4:48703800-48703819 | MS.gene034845:intron | 30.0% |
| ! | TAACTTTGGTGTGATTTCAT+TGG | - | chr1.4:48703688-48703707 | None:intergenic | 30.0% |
| ! | TTAACTAATTCCGTGCTTTT+CGG | + | chr1.4:48704730-48704749 | MS.gene034845:intron | 30.0% |
| !! | AAAGAATTTGTTAGCACAGT+AGG | + | chr1.4:48705523-48705542 | MS.gene034845:intron | 30.0% |
| !! | AAGAATTTGTTAGCACAGTA+GGG | + | chr1.4:48705524-48705543 | MS.gene034845:intron | 30.0% |
| !! | ACTCTAAAGGAGTATTAAGA+AGG | - | chr1.4:48705567-48705586 | None:intergenic | 30.0% |
| !! | CTTATTTTCATAAGTACTCC+AGG | - | chr1.4:48704128-48704147 | None:intergenic | 30.0% |
| !! | TTCAGTACTGATGTTAATTG+AGG | + | chr1.4:48706342-48706361 | MS.gene034845:CDS | 30.0% |
| !!! | CCTTGTTTTGATTAAGCTAT+TGG | + | chr1.4:48704468-48704487 | MS.gene034845:intron | 30.0% |
| !!! | GGTTGGTTTTACCTTTAAAA+GGG | - | chr1.4:48703608-48703627 | None:intergenic | 30.0% |
| !!! | GTTGGTTTTACCTTTAAAAG+GGG | - | chr1.4:48703607-48703626 | None:intergenic | 30.0% |
| !!! | TGGTTGGTTTTACCTTTAAA+AGG | - | chr1.4:48703609-48703628 | None:intergenic | 30.0% |
| !!! | TTTAAATCTGGCTTGGATTT+TGG | + | chr1.4:48704998-48705017 | MS.gene034845:intron | 30.0% |
| AACAGACACCCAAGTAATTT+AGG | - | chr1.4:48704899-48704918 | None:intergenic | 35.0% | |
| AACTTTGTAAAATGAGAGGG+TGG | + | chr1.4:48705411-48705430 | MS.gene034845:intron | 35.0% | |
| AGTCAAATGGATCAATTCTC+AGG | - | chr1.4:48706824-48706843 | None:intergenic | 35.0% | |
| ATAGAGCTTCTTCAAAGTGT+TGG | - | chr1.4:48704770-48704789 | None:intergenic | 35.0% | |
| ATAGCATACCTTAGTTGCAA+AGG | - | chr1.4:48706149-48706168 | None:intergenic | 35.0% | |
| CTGCAATAATTGTATTTGGC+GGG | + | chr1.4:48704812-48704831 | MS.gene034845:CDS | 35.0% | |
| GAACCAAACAAATTGTGATC+AGG | - | chr1.4:48706261-48706280 | None:intergenic | 35.0% | |
| GAATTCCATTGTTTGGATGA+GGG | - | chr1.4:48705816-48705835 | None:intergenic | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | - | chr1.4:48705858-48705877 | None:intergenic | 35.0% | |
| GAGGGAATTCAAATACTTAG+AGG | - | chr1.4:48705738-48705757 | None:intergenic | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | - | chr1.4:48705840-48705859 | None:intergenic | 35.0% | |
| GCATATATCGGCAAGAATTA+GGG | - | chr1.4:48706680-48706699 | None:intergenic | 35.0% | |
| GCATTTCACTATTGATCCTT+GGG | + | chr1.4:48705020-48705039 | MS.gene034845:intron | 35.0% | |
| GGAAGAAAAGGAATAGATGA+TGG | - | chr1.4:48704428-48704447 | None:intergenic | 35.0% | |
| GGGAATGTAATGTAATGTTG+AGG | - | chr1.4:48705796-48705815 | None:intergenic | 35.0% | |
| TAATGAGAAATGAGTATGGC+AGG | + | chr1.4:48704310-48704329 | MS.gene034845:intron | 35.0% | |
| TGAATTCCATTGTTTGGATG+AGG | - | chr1.4:48705817-48705836 | None:intergenic | 35.0% | |
| TGAGGGAATGTAATGTTATG+AGG | - | chr1.4:48705859-48705878 | None:intergenic | 35.0% | |
| TGCATATATCGGCAAGAATT+AGG | - | chr1.4:48706681-48706700 | None:intergenic | 35.0% | |
| TGTGTTTGGATGAGGTAATT+TGG | + | chr1.4:48705678-48705697 | MS.gene034845:intron | 35.0% | |
| TTGAAGAAGCTCTATCTAAC+AGG | + | chr1.4:48704775-48704794 | MS.gene034845:CDS | 35.0% | |
| TTGAGCAACAAGAGAAAACA+AGG | + | chr1.4:48706374-48706393 | MS.gene034845:CDS | 35.0% | |
| TTGAGGTGAATTCCATTGTT+TGG | - | chr1.4:48705823-48705842 | None:intergenic | 35.0% | |
| TTTCTACACTGAAGTTGAAC+TGG | + | chr1.4:48706424-48706443 | MS.gene034845:intron | 35.0% | |
| ! | ACAAAGAGCTTTTAGTGAAG+AGG | + | chr1.4:48704370-48704389 | MS.gene034845:CDS | 35.0% |
| ! | ATGCCTGATCACAATTTGTT+TGG | + | chr1.4:48706255-48706274 | MS.gene034845:intron | 35.0% |
| ! | ATTTAGAGTGTGTTTGGATG+AGG | + | chr1.4:48705670-48705689 | MS.gene034845:intron | 35.0% |
| ! | CAAAGAGCTTTTAGTGAAGA+GGG | + | chr1.4:48704371-48704390 | MS.gene034845:CDS | 35.0% |
| ! | GGCAAAGAAAATGGAGTTTT+TGG | - | chr1.4:48703586-48703605 | None:intergenic | 35.0% |
| ! | TAGAGCTTCTTCAAAGTGTT+GGG | - | chr1.4:48704769-48704788 | None:intergenic | 35.0% |
| ! | TATTCCTTTTCTTCCTCATG+TGG | + | chr1.4:48704433-48704452 | MS.gene034845:CDS | 35.0% |
| !! | AGAATTTGTTAGCACAGTAG+GGG | + | chr1.4:48705525-48705544 | MS.gene034845:intron | 35.0% |
| !! | ATGGAGTTTTTGGAAAGTGA+AGG | - | chr1.4:48703576-48703595 | None:intergenic | 35.0% |
| !! | CTAAAGGAGTATTAAGAAGG+AGG | - | chr1.4:48705564-48705583 | None:intergenic | 35.0% |
| !! | GGAATAGATGATGGAATTTC+CGG | - | chr1.4:48704419-48704438 | None:intergenic | 35.0% |
| !! | GTATTCGAAATGAGAGCATT+TGG | + | chr1.4:48704696-48704715 | MS.gene034845:intron | 35.0% |
| !! | TGGAGTTTTTGGAAAGTGAA+GGG | - | chr1.4:48703575-48703594 | None:intergenic | 35.0% |
| !! | TTTTTGGAAAGTGAAGGGTA+AGG | - | chr1.4:48703570-48703589 | None:intergenic | 35.0% |
| !!! | ATCCTTATTTTAATGGCAGC+TGG | + | chr1.4:48706064-48706083 | MS.gene034845:intron | 35.0% |
| !!! | GTTTTAAAACTCACCACATG+AGG | - | chr1.4:48704449-48704468 | None:intergenic | 35.0% |
| ACATTCCCTCATCCAAACAA+TGG | + | chr1.4:48705808-48705827 | MS.gene034845:intron | 40.0% | |
| AGAAATGAGTATGGCAGGTT+AGG | + | chr1.4:48704315-48704334 | MS.gene034845:intron | 40.0% | |
| ATCATTTGCTCTTGGAAAGG+AGG | - | chr1.4:48705323-48705342 | None:intergenic | 40.0% | |
| ATTAATCCGATTTCGGCATC+TGG | + | chr1.4:48706579-48706598 | MS.gene034845:CDS | 40.0% | |
| CTACTTCAATCCGAAAAGCA+CGG | - | chr1.4:48704743-48704762 | None:intergenic | 40.0% | |
| CTCCAGCTGCCATTAAAATA+AGG | - | chr1.4:48706069-48706088 | None:intergenic | 40.0% | |
| GGCATTTCACTATTGATCCT+TGG | + | chr1.4:48705019-48705038 | MS.gene034845:intron | 40.0% | |
| GTAGAAACATACCAGTTCCA+AGG | - | chr1.4:48706411-48706430 | None:intergenic | 40.0% | |
| GTTCAAACATACACCACTTG+TGG | - | chr1.4:48706559-48706578 | None:intergenic | 40.0% | |
| TAAGGTAGAATTGTGGAGGA+AGG | - | chr1.4:48703552-48703571 | None:intergenic | 40.0% | |
| TATAGGTGGTACGTCATATG+AGG | + | chr1.4:48706100-48706119 | MS.gene034845:CDS | 40.0% | |
| TGAAGGGTAAGGTAGAATTG+TGG | - | chr1.4:48703559-48703578 | None:intergenic | 40.0% | |
| TGCATTTGCCTTTGCAACTA+AGG | + | chr1.4:48706138-48706157 | MS.gene034845:CDS | 40.0% | |
| TTTCATAAATCAGACCCCGA+AGG | - | chr1.4:48705614-48705633 | None:intergenic | 40.0% | |
| ! | TCAGGATTTTGTTCAGATGC+AGG | + | chr1.4:48703834-48703853 | MS.gene034845:CDS | 40.0% |
| ! | TGGGGTGCAAGTTTAGTTTA+AGG | + | chr1.4:48705260-48705279 | MS.gene034845:intron | 40.0% |
| ACAAAATCCTGAACCGTCTC+TGG | - | chr1.4:48703826-48703845 | None:intergenic | 45.0% | |
| AGGGTAAGGTAGAATTGTGG+AGG | - | chr1.4:48703556-48703575 | None:intergenic | 45.0% | |
| AGTATTAAGAAGGAGGACCC+AGG | - | chr1.4:48705557-48705576 | None:intergenic | 45.0% | |
| ATGCTTCACCCTAGTGTGTT+TGG | - | chr1.4:48705896-48705915 | None:intergenic | 45.0% | |
| CACAATTGGGTCAACTTGAC+TGG | - | chr1.4:48706290-48706309 | None:intergenic | 45.0% | |
| CATTATTGAAGGGCCAGAGA+CGG | + | chr1.4:48703810-48703829 | MS.gene034845:CDS | 45.0% | |
| CCGAAAAGGATGCCACAATT+GGG | - | chr1.4:48706303-48706322 | None:intergenic | 45.0% | |
| CTCACCACATGAGGAAGAAA+AGG | - | chr1.4:48704440-48704459 | None:intergenic | 45.0% | |
| CTGGAGCTGAAATTGGGTAT+AGG | + | chr1.4:48706083-48706102 | MS.gene034845:CDS | 45.0% | |
| GAGCTGAAATTGGGTATAGG+TGG | + | chr1.4:48706086-48706105 | MS.gene034845:CDS | 45.0% | |
| GGAAGATGCAAATGAGATGC+CGG | + | chr1.4:48704397-48704416 | MS.gene034845:CDS | 45.0% | |
| TCACCCTAGTGTGTTTGGAT+GGG | - | chr1.4:48705891-48705910 | None:intergenic | 45.0% | |
| TTCACCCTAGTGTGTTTGGA+TGG | - | chr1.4:48705892-48705911 | None:intergenic | 45.0% | |
| TTTCCAGCACCAGAGCAATT+TGG | - | chr1.4:48706648-48706667 | None:intergenic | 45.0% | |
| TTTGGACACCTTGTCGTTGT+AGG | - | chr1.4:48706630-48706649 | None:intergenic | 45.0% | |
| ! | AAATTGCTCTGGTGCTGGAA+AGG | + | chr1.4:48706647-48706666 | MS.gene034845:CDS | 45.0% |
| ! | ACAAGGTGCAAGTATTGCCT+TGG | + | chr1.4:48706391-48706410 | MS.gene034845:CDS | 45.0% |
| ! | ACAAGGTGTCCAAATTGCTC+TGG | + | chr1.4:48706636-48706655 | MS.gene034845:CDS | 45.0% |
| ! | AGCTTTTAGTGAAGAGGGAG+AGG | + | chr1.4:48704376-48704395 | MS.gene034845:CDS | 45.0% |
| ! | CCAATTGTGGCATCCTTTTC+GGG | + | chr1.4:48706301-48706320 | MS.gene034845:CDS | 45.0% |
| ! | CCCAATTGTGGCATCCTTTT+CGG | + | chr1.4:48706300-48706319 | MS.gene034845:CDS | 45.0% |
| ! | GAAGTACCAGATGCCGAAAT+CGG | - | chr1.4:48706588-48706607 | None:intergenic | 45.0% |
| ! | TGCAAGTATTGCCTTGGAAC+TGG | + | chr1.4:48706397-48706416 | MS.gene034845:CDS | 45.0% |
| ! | TTGGATGGGGGAATGTTTTG+AGG | - | chr1.4:48705877-48705896 | None:intergenic | 45.0% |
| ! | TTTTGTTCAGATGCAGGTGC+AGG | + | chr1.4:48703840-48703859 | MS.gene034845:CDS | 45.0% |
| !! | CAGTCAAGTTGACCCAATTG+TGG | + | chr1.4:48706288-48706307 | MS.gene034845:intron | 45.0% |
| !! | TGGATGGGGGAATGTTTTGA+GGG | - | chr1.4:48705876-48705895 | None:intergenic | 45.0% |
| !!! | AAAACTTTTTATTTTTTTAT+AGG | + | chr1.4:48705469-48705488 | MS.gene034845:intron | 5.0% |
| !!! | TTATAAAATTTGTAATTTTA+TGG | + | chr1.4:48706505-48706524 | MS.gene034845:intron | 5.0% |
| AATTGCGTGCTCTTCTCCAC+AGG | + | chr1.4:48703653-48703672 | MS.gene034845:CDS | 50.0% | |
| ACCCTAGTGTGTTTGGATGG+GGG | - | chr1.4:48705889-48705908 | None:intergenic | 50.0% | |
| ATGGCAGCTGGAGCTGAAAT+TGG | + | chr1.4:48706076-48706095 | MS.gene034845:intron | 50.0% | |
| CACAGTAGGGGTCAAAACCT+GGG | + | chr1.4:48705537-48705556 | MS.gene034845:intron | 50.0% | |
| CACCCTAGTGTGTTTGGATG+GGG | - | chr1.4:48705890-48705909 | None:intergenic | 50.0% | |
| CCATCTTCATCCCAGTGCAA+AGG | - | chr1.4:48706788-48706807 | None:intergenic | 50.0% | |
| CCCGAAAAGGATGCCACAAT+TGG | - | chr1.4:48706304-48706323 | None:intergenic | 50.0% | |
| CCTTTGCACTGGGATGAAGA+TGG | + | chr1.4:48706785-48706804 | MS.gene034845:CDS | 50.0% | |
| TACTTCTGTTAGACCCCTGC+AGG | + | chr1.4:48706602-48706621 | MS.gene034845:CDS | 50.0% | |
| TCCCCCATCCAAACACACTA+GGG | + | chr1.4:48705885-48705904 | MS.gene034845:intron | 50.0% | |
| TGCAGGTTCCTACAACGACA+AGG | + | chr1.4:48706619-48706638 | MS.gene034845:CDS | 50.0% | |
| TGGCAGCTGGAGCTGAAATT+GGG | + | chr1.4:48706077-48706096 | MS.gene034845:intron | 50.0% | |
| TGTCCAAATTGCTCTGGTGC+TGG | + | chr1.4:48706642-48706661 | MS.gene034845:CDS | 50.0% | |
| TGTCGTTGTAGGAACCTGCA+GGG | - | chr1.4:48706619-48706638 | None:intergenic | 50.0% | |
| TTCCCCCATCCAAACACACT+AGG | + | chr1.4:48705884-48705903 | MS.gene034845:intron | 50.0% | |
| TTGTCGTTGTAGGAACCTGC+AGG | - | chr1.4:48706620-48706639 | None:intergenic | 50.0% | |
| ! | GCGGTTTTCGTAAGCTATCC+TGG | + | chr1.4:48704107-48704126 | MS.gene034845:intron | 50.0% |
| !! | ATTGTGGCATCCTTTTCGGG+TGG | + | chr1.4:48706304-48706323 | MS.gene034845:CDS | 50.0% |
| !! | GGTATCGGTTGGGACTCTAA+AGG | - | chr1.4:48705580-48705599 | None:intergenic | 50.0% |
| AAGGTGTACCCCAGCGGTAT+CGG | - | chr1.4:48705595-48705614 | None:intergenic | 55.0% | |
| ATACCGCTGGGGTACACCTT+CGG | + | chr1.4:48705595-48705614 | MS.gene034845:intron | 55.0% | |
| ATCCCAGTGCAAAGGCAGGT+TGG | - | chr1.4:48706780-48706799 | None:intergenic | 55.0% | |
| CTTCATCCCAGTGCAAAGGC+AGG | - | chr1.4:48706784-48706803 | None:intergenic | 55.0% | |
| GCACAGTAGGGGTCAAAACC+TGG | + | chr1.4:48705536-48705555 | MS.gene034845:intron | 55.0% | |
| GTCCAACCTGCCTTTGCACT+GGG | + | chr1.4:48706775-48706794 | MS.gene034845:CDS | 55.0% | |
| GTCGTTGTAGGAACCTGCAG+GGG | - | chr1.4:48706618-48706637 | None:intergenic | 55.0% | |
| TCATTGGAGCCTGCATCCTG+TGG | - | chr1.4:48703672-48703691 | None:intergenic | 55.0% | |
| TGCTCTTCTCCACAGGATGC+AGG | + | chr1.4:48703660-48703679 | MS.gene034845:CDS | 55.0% | |
| TGTCCAACCTGCCTTTGCAC+TGG | + | chr1.4:48706774-48706793 | MS.gene034845:CDS | 55.0% | |
| !! | CAGGTTACTTGGCTTGCGCT+CGG | + | chr1.4:48706529-48706548 | MS.gene034845:intron | 55.0% |
| !!! | TCCTTTTCGGGTGGAGCAGT+TGG | + | chr1.4:48706313-48706332 | MS.gene034845:CDS | 55.0% |
| AGAGTCCCAACCGATACCGC+TGG | + | chr1.4:48705582-48705601 | MS.gene034845:intron | 60.0% | |
| AGTCCCAACCGATACCGCTG+GGG | + | chr1.4:48705584-48705603 | MS.gene034845:intron | 60.0% | |
| GAGTCCCAACCGATACCGCT+GGG | + | chr1.4:48705583-48705602 | MS.gene034845:intron | 60.0% | |
| GCCAACTGCTCCACCCGAAA+AGG | - | chr1.4:48706317-48706336 | None:intergenic | 60.0% | |
| GGAGATTGCGTGTGCAGCAG+CGG | + | chr1.4:48704336-48704355 | MS.gene034845:CDS | 60.0% | |
| TACCGCTGGGGTACACCTTC+GGG | + | chr1.4:48705596-48705615 | MS.gene034845:intron | 60.0% | |
| TGAAGGGCCAGAGACGGTTC+AGG | + | chr1.4:48703816-48703835 | MS.gene034845:CDS | 60.0% | |
| !! | GTACCCCAGCGGTATCGGTT+GGG | - | chr1.4:48705590-48705609 | None:intergenic | 60.0% |
| !! | TGCGCTCGGTGTTCCACAAG+TGG | + | chr1.4:48706543-48706562 | MS.gene034845:CDS | 60.0% |
| !! | TGGCGGGCTTATTGCACCGA+CGG | + | chr1.4:48704828-48704847 | MS.gene034845:CDS | 60.0% |
| !! | TGTACCCCAGCGGTATCGGT+TGG | - | chr1.4:48705591-48705610 | None:intergenic | 60.0% |
| ACCGCTGGGGTACACCTTCG+GGG | + | chr1.4:48705597-48705616 | MS.gene034845:intron | 65.0% | |
| ! | ACCCCGAAGGTGTACCCCAG+CGG | - | chr1.4:48705601-48705620 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 48703534 | 48706845 | 48703534 | ID=MS.gene034845 |
| chr1.4 | mRNA | 48703534 | 48706845 | 48703534 | ID=MS.gene034845.t1;Parent=MS.gene034845 |
| chr1.4 | exon | 48703534 | 48703703 | 48703534 | ID=MS.gene034845.t1.exon1;Parent=MS.gene034845.t1 |
| chr1.4 | CDS | 48703534 | 48703703 | 48703534 | ID=cds.MS.gene034845.t1;Parent=MS.gene034845.t1 |
| chr1.4 | exon | 48703801 | 48703918 | 48703801 | ID=MS.gene034845.t1.exon2;Parent=MS.gene034845.t1 |
| chr1.4 | CDS | 48703801 | 48703918 | 48703801 | ID=cds.MS.gene034845.t1;Parent=MS.gene034845.t1 |
| chr1.4 | exon | 48704332 | 48704454 | 48704332 | ID=MS.gene034845.t1.exon3;Parent=MS.gene034845.t1 |
| chr1.4 | CDS | 48704332 | 48704454 | 48704332 | ID=cds.MS.gene034845.t1;Parent=MS.gene034845.t1 |
| chr1.4 | exon | 48704763 | 48704849 | 48704763 | ID=MS.gene034845.t1.exon4;Parent=MS.gene034845.t1 |
| chr1.4 | CDS | 48704763 | 48704849 | 48704763 | ID=cds.MS.gene034845.t1;Parent=MS.gene034845.t1 |
| chr1.4 | exon | 48706083 | 48706159 | 48706083 | ID=MS.gene034845.t1.exon5;Parent=MS.gene034845.t1 |
| chr1.4 | CDS | 48706083 | 48706159 | 48706083 | ID=cds.MS.gene034845.t1;Parent=MS.gene034845.t1 |
| chr1.4 | exon | 48706291 | 48706418 | 48706291 | ID=MS.gene034845.t1.exon6;Parent=MS.gene034845.t1 |
| chr1.4 | CDS | 48706291 | 48706418 | 48706291 | ID=cds.MS.gene034845.t1;Parent=MS.gene034845.t1 |
| chr1.4 | exon | 48706532 | 48706668 | 48706532 | ID=MS.gene034845.t1.exon7;Parent=MS.gene034845.t1 |
| chr1.4 | CDS | 48706532 | 48706668 | 48706532 | ID=cds.MS.gene034845.t1;Parent=MS.gene034845.t1 |
| chr1.4 | exon | 48706768 | 48706845 | 48706768 | ID=MS.gene034845.t1.exon8;Parent=MS.gene034845.t1 |
| chr1.4 | CDS | 48706768 | 48706845 | 48706768 | ID=cds.MS.gene034845.t1;Parent=MS.gene034845.t1 |
| Gene Sequence |
| Protein sequence |
