Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034926.t1 | XP_013468053.1 | 99.2 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 1.60E-201 | 711.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034926.t1 | Q9SJQ9 | 87.4 | 358 | 45 | 0 | 1 | 358 | 1 | 358 | 7.1e-179 | 627.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034926.t1 | A0A072VVG3 | 99.2 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 1.1e-201 | 711.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003645 | MS.gene034926 | PPI |
| MS.gene23350 | MS.gene034926 | PPI |
| MS.gene034926 | MS.gene062925 | PPI |
| MS.gene034926 | MS.gene50709 | PPI |
| MS.gene034926 | MS.gene062923 | PPI |
| MS.gene034926 | MS.gene23352 | PPI |
| MS.gene034926 | MS.gene003647 | PPI |
| MS.gene034926 | MS.gene50712 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034926.t1 | MTR_1g061050 | 99.162 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 0.0 | 730 |
| MS.gene034926.t1 | MTR_5g069055 | 85.754 | 358 | 51 | 0 | 1 | 358 | 1 | 358 | 0.0 | 637 |
| MS.gene034926.t1 | MTR_5g069050 | 79.330 | 358 | 59 | 1 | 1 | 358 | 42 | 384 | 0.0 | 576 |
| MS.gene034926.t1 | MTR_5g096670 | 76.257 | 358 | 84 | 1 | 1 | 358 | 1 | 357 | 0.0 | 558 |
| MS.gene034926.t1 | MTR_4g057670 | 55.682 | 352 | 151 | 4 | 8 | 358 | 53 | 400 | 2.40e-131 | 381 |
| MS.gene034926.t1 | MTR_4g071860 | 55.682 | 352 | 151 | 4 | 8 | 358 | 53 | 400 | 2.99e-131 | 381 |
| MS.gene034926.t1 | MTR_1g109200 | 53.090 | 356 | 162 | 4 | 4 | 358 | 40 | 391 | 8.14e-129 | 374 |
| MS.gene034926.t1 | MTR_4g071880 | 49.859 | 355 | 155 | 6 | 8 | 358 | 51 | 386 | 1.36e-109 | 325 |
| MS.gene034926.t1 | MTR_7g103920 | 69.792 | 96 | 4 | 1 | 112 | 207 | 11 | 81 | 3.98e-37 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034926.t1 | AT2G36460 | 87.430 | 358 | 45 | 0 | 1 | 358 | 1 | 358 | 0.0 | 647 |
| MS.gene034926.t1 | AT3G52930 | 86.872 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 0.0 | 640 |
| MS.gene034926.t1 | AT5G03690 | 86.351 | 359 | 48 | 1 | 1 | 358 | 1 | 359 | 0.0 | 614 |
| MS.gene034926.t1 | AT5G03690 | 86.819 | 349 | 45 | 1 | 11 | 358 | 45 | 393 | 0.0 | 600 |
| MS.gene034926.t1 | AT4G26530 | 78.212 | 358 | 78 | 0 | 1 | 358 | 1 | 358 | 0.0 | 575 |
| MS.gene034926.t1 | AT4G26530 | 78.212 | 358 | 78 | 0 | 1 | 358 | 1 | 358 | 0.0 | 575 |
| MS.gene034926.t1 | AT4G26530 | 78.212 | 358 | 78 | 0 | 1 | 358 | 1 | 358 | 0.0 | 575 |
| MS.gene034926.t1 | AT4G26520 | 73.464 | 358 | 95 | 0 | 1 | 358 | 1 | 358 | 0.0 | 535 |
| MS.gene034926.t1 | AT4G26520 | 73.596 | 356 | 94 | 0 | 1 | 356 | 1 | 356 | 0.0 | 530 |
| MS.gene034926.t1 | AT4G26520 | 73.352 | 349 | 93 | 0 | 10 | 358 | 7 | 355 | 0.0 | 520 |
| MS.gene034926.t1 | AT4G26520 | 73.352 | 349 | 93 | 0 | 10 | 358 | 7 | 355 | 0.0 | 520 |
| MS.gene034926.t1 | AT2G36460 | 88.390 | 267 | 31 | 0 | 92 | 358 | 1 | 267 | 3.19e-176 | 490 |
| MS.gene034926.t1 | AT2G36460 | 88.390 | 267 | 31 | 0 | 92 | 358 | 1 | 267 | 3.19e-176 | 490 |
| MS.gene034926.t1 | AT5G03690 | 87.640 | 267 | 32 | 1 | 93 | 358 | 1 | 267 | 3.77e-164 | 459 |
| MS.gene034926.t1 | AT5G03690 | 87.640 | 267 | 32 | 1 | 93 | 358 | 1 | 267 | 3.77e-164 | 459 |
| MS.gene034926.t1 | AT4G38970 | 55.650 | 354 | 152 | 4 | 6 | 358 | 49 | 398 | 1.01e-132 | 385 |
| MS.gene034926.t1 | AT2G21330 | 54.520 | 354 | 156 | 4 | 6 | 358 | 50 | 399 | 1.08e-129 | 377 |
| MS.gene034926.t1 | AT2G01140 | 55.114 | 352 | 153 | 4 | 8 | 358 | 44 | 391 | 3.37e-129 | 375 |
| MS.gene034926.t1 | AT2G21330 | 52.542 | 354 | 153 | 5 | 6 | 358 | 50 | 389 | 1.50e-120 | 353 |
| MS.gene034926.t1 | AT4G38970 | 55.598 | 259 | 113 | 2 | 6 | 263 | 49 | 306 | 9.25e-94 | 285 |
| MS.gene034926.t1 | AT2G21330 | 53.668 | 259 | 118 | 2 | 6 | 263 | 50 | 307 | 1.61e-91 | 276 |
Find 96 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCCAATGCTGCTTATAT+TGG | 0.273936 | 1.3:-44137182 | MS.gene034926:CDS |
| TGGACTCTTACATTCTCTTA+TGG | 0.280031 | 1.3:-44135740 | MS.gene034926:CDS |
| AGCAATGCAGCTTGAGCTTT+AGG | 0.286122 | 1.3:+44135662 | None:intergenic |
| CTCAAGCTGCATTGCTTGTT+AGG | 0.288958 | 1.3:-44135655 | MS.gene034926:CDS |
| GATCCTGGTGTAACCATATT+AGG | 0.309736 | 1.3:+44135932 | None:intergenic |
| GAAGAAAGCTGGAGTTCTTC+CGG | 0.325790 | 1.3:-44136329 | MS.gene034926:CDS |
| GACAAGGGAGATGGTTCATT+TGG | 0.333091 | 1.3:+44136157 | None:intergenic |
| AGCAGCAAGGATACCCTTTC+CGG | 0.352251 | 1.3:+44137154 | None:intergenic |
| TAATGCAATGAACAAACTTA+AGG | 0.360057 | 1.3:-44135774 | MS.gene034926:CDS |
| ATAACCTCAGGAGCAACTTT+AGG | 0.366412 | 1.3:+44135902 | None:intergenic |
| CCGGTGCAAGGTTCGCTAAA+TGG | 0.381985 | 1.3:-44136201 | MS.gene034926:CDS |
| TTCAGAGTCTCTTCATGTTA+AGG | 0.387381 | 1.3:-44135567 | MS.gene034926:CDS |
| GTTGAACTTGCCGGCACAAA+TGG | 0.411220 | 1.3:-44136283 | MS.gene034926:CDS |
| GATGAATCTACTGGCACAAT+TGG | 0.412825 | 1.3:-44137131 | MS.gene034926:CDS |
| GAACTCTTGTTCACTGCCCC+TGG | 0.414062 | 1.3:-44137050 | MS.gene034926:CDS |
| AAGAAAGCTGGAGTTCTTCC+GGG | 0.415915 | 1.3:-44136328 | MS.gene034926:CDS |
| AATGCAATGAACAAACTTAA+GGG | 0.427010 | 1.3:-44135773 | MS.gene034926:CDS |
| GACCATCATGTTCTTCTTGA+AGG | 0.430660 | 1.3:-44135968 | MS.gene034926:CDS |
| AGAATCTCAGGCTCTACAAT+TGG | 0.433301 | 1.3:+44136070 | None:intergenic |
| CAAAGCTCGGACTGTGTGTT+GGG | 0.435174 | 1.3:+44135877 | None:intergenic |
| AAGGGAACCGTTGAACTTGC+CGG | 0.435648 | 1.3:-44136292 | MS.gene034926:CDS |
| GCAGCAAGGATACCCTTTCC+GGG | 0.463973 | 1.3:+44137155 | None:intergenic |
| CCCTTGTCAACCTTGATACC+CGG | 0.464933 | 1.3:+44136310 | None:intergenic |
| GCTGCTTATATTGGCTCTCC+CGG | 0.465324 | 1.3:-44137173 | MS.gene034926:CDS |
| AGAAACCACAACTCAAGGTT+TGG | 0.472063 | 1.3:-44136260 | MS.gene034926:CDS |
| AACTTAAGGGAAAGAAGCCT+TGG | 0.474897 | 1.3:-44135760 | MS.gene034926:CDS |
| TGGAGTTCTTCCGGGTATCA+AGG | 0.478690 | 1.3:-44136320 | MS.gene034926:CDS |
| GATCCATCCACTAGAATCTC+AGG | 0.488146 | 1.3:+44136058 | None:intergenic |
| GCCGTCATATGCCAAGAGAA+TGG | 0.489726 | 1.3:-44136100 | MS.gene034926:CDS |
| TGTTCTTGCAGCATGTTACA+AGG | 0.495030 | 1.3:-44135999 | MS.gene034926:CDS |
| TTGGAACCAAACCATTCTCT+TGG | 0.499681 | 1.3:+44136089 | None:intergenic |
| ACTTCAGCAAAGTACTCTTA+AGG | 0.501897 | 1.3:-44135711 | MS.gene034926:CDS |
| TATATTGGCTCTCCCGGAAA+GGG | 0.502381 | 1.3:-44137167 | MS.gene034926:CDS |
| TTCTTCAACACATCCACAAA+GGG | 0.502730 | 1.3:+44136346 | None:intergenic |
| GCAAAGTACTCTTAAGGCAT+GGG | 0.512733 | 1.3:-44135705 | MS.gene034926:CDS |
| GTGTGTTGGGCTATAACCTC+AGG | 0.515555 | 1.3:+44135890 | None:intergenic |
| CTTGCTGCTGATGAATCTAC+TGG | 0.520412 | 1.3:-44137140 | MS.gene034926:CDS |
| TCGTGGATTGACAAGGGAGA+TGG | 0.521733 | 1.3:+44136148 | None:intergenic |
| ACAAAGCTCGGACTGTGTGT+TGG | 0.522609 | 1.3:+44135876 | None:intergenic |
| CTCTTACATTCTCTTATGGA+AGG | 0.525023 | 1.3:-44135736 | MS.gene034926:CDS |
| GTGGATGTGTTGAAGAAAGC+TGG | 0.525235 | 1.3:-44136340 | MS.gene034926:CDS |
| GTTGCGAACCGTTCCTGCTG+CGG | 0.527441 | 1.3:-44135855 | MS.gene034926:CDS |
| ACTATAGCAGGAACCGCAGC+AGG | 0.528273 | 1.3:+44135842 | None:intergenic |
| TGTGGTTTCTCCATTTGTGC+CGG | 0.528303 | 1.3:+44136273 | None:intergenic |
| CTGAGGCAGTCTAAACAACC+AGG | 0.529230 | 1.3:+44137032 | None:intergenic |
| AGCAAAGTACTCTTAAGGCA+TGG | 0.530894 | 1.3:-44135706 | MS.gene034926:CDS |
| ACATGCTGCAAGAACACGTT+CGG | 0.537011 | 1.3:+44136006 | None:intergenic |
| TAAGAGAATGTAAGAGTCCA+AGG | 0.537565 | 1.3:+44135743 | None:intergenic |
| CTCTCCTAAAGTTGCTCCTG+AGG | 0.537898 | 1.3:-44135906 | MS.gene034926:CDS |
| AGCAGGAACCGCAGCAGGAA+CGG | 0.540477 | 1.3:+44135847 | None:intergenic |
| GCAACTCTAGGAACTTATCA+AGG | 0.543212 | 1.3:-44135614 | MS.gene034926:CDS |
| TCAATCCACGAAAACGCCTA+CGG | 0.549910 | 1.3:-44136136 | MS.gene034926:CDS |
| ACTTTAGGAGAGTCTGATCC+TGG | 0.549951 | 1.3:+44135917 | None:intergenic |
| ATTTGTGCCGGCAAGTTCAA+CGG | 0.550481 | 1.3:+44136285 | None:intergenic |
| TTATATTGGCTCTCCCGGAA+AGG | 0.551511 | 1.3:-44137168 | MS.gene034926:CDS |
| AGAGCCAATATAAGCAGCAT+TGG | 0.554374 | 1.3:+44137178 | None:intergenic |
| CCAGACAAGAAAACTATAGC+AGG | 0.555235 | 1.3:+44135830 | None:intergenic |
| ACCATTCTCTTGGCATATGA+CGG | 0.555382 | 1.3:+44136099 | None:intergenic |
| GAGCCTGAGATTCTAGTGGA+TGG | 0.555574 | 1.3:-44136061 | MS.gene034926:CDS |
| CCATTTAGCGAACCTTGCAC+CGG | 0.555662 | 1.3:+44136201 | None:intergenic |
| TGCAAGAAGTACTATGAAGC+CGG | 0.557100 | 1.3:-44136220 | MS.gene034926:CDS |
| TCTTTCAAGAGCAAATATGA+AGG | 0.558115 | 1.3:-44138444 | MS.gene034926:intron |
| GAACGGTTCGCAACAAAGCT+CGG | 0.563519 | 1.3:+44135864 | None:intergenic |
| GCAAATTCAGAAGCAACTCT+AGG | 0.563691 | 1.3:-44135626 | MS.gene034926:CDS |
| GTGTATAGGAGTACCCTTTG+TGG | 0.565160 | 1.3:-44136359 | MS.gene034926:intron |
| TATCAAGGTAATGCTAACCT+TGG | 0.568421 | 1.3:-44135599 | MS.gene034926:CDS |
| TGGCGTGCCGTGCTAAAGAT+CGG | 0.577059 | 1.3:-44136181 | MS.gene034926:CDS |
| AATGGAGAAACCACAACTCA+AGG | 0.579845 | 1.3:-44136265 | MS.gene034926:CDS |
| CATATGCCAAGAGAATGGTT+TGG | 0.584136 | 1.3:-44136095 | MS.gene034926:CDS |
| GTCATCCAAACCTTGAGTTG+TGG | 0.586628 | 1.3:+44136255 | None:intergenic |
| AGTACTATGAAGCCGGTGCA+AGG | 0.593122 | 1.3:-44136213 | MS.gene034926:CDS |
| ACTCAAGGTTTGGATGACCT+TGG | 0.593476 | 1.3:-44136250 | MS.gene034926:CDS |
| TTCGCGAAGAGTACGTCTGT+TGG | 0.596179 | 1.3:+44137070 | None:intergenic |
| ACTTCTTGCACCTCTGACCA+AGG | 0.600417 | 1.3:+44136233 | None:intergenic |
| TCCGGGTATCAAGGTTGACA+AGG | 0.600493 | 1.3:-44136311 | MS.gene034926:CDS |
| GTTTGGATGACCTTGGTCAG+AGG | 0.601427 | 1.3:-44136243 | MS.gene034926:CDS |
| AGAATCCATACTACCTGCAG+CGG | 0.606136 | 1.3:+44136971 | None:intergenic |
| AAGCCTAATATGGTTACACC+AGG | 0.609198 | 1.3:-44135935 | MS.gene034926:CDS |
| TCTTACATTCTCTTATGGAA+GGG | 0.615325 | 1.3:-44135735 | MS.gene034926:CDS |
| ATTTGGACCGATCTTTAGCA+CGG | 0.615328 | 1.3:+44136174 | None:intergenic |
| TGTAGAGCCTGAGATTCTAG+TGG | 0.617102 | 1.3:-44136065 | MS.gene034926:CDS |
| CAGTAGATTCATCAGCAGCA+AGG | 0.619396 | 1.3:+44137141 | None:intergenic |
| TTTCTTCAACACATCCACAA+AGG | 0.625245 | 1.3:+44136345 | None:intergenic |
| GTCTGGTGGACAAAGTGAAG+AGG | 0.625664 | 1.3:-44135813 | MS.gene034926:CDS |
| AGTACTCTTAAGGCATGGGG+TGG | 0.629413 | 1.3:-44135701 | MS.gene034926:CDS |
| GGTTGTTTAGACTGCCTCAG+TGG | 0.642712 | 1.3:-44137029 | MS.gene034926:CDS |
| TACCTTCAAGAAGAACATGA+TGG | 0.642921 | 1.3:+44135966 | None:intergenic |
| CAAAGTACTCTTAAGGCATG+GGG | 0.654273 | 1.3:-44135704 | MS.gene034926:CDS |
| GGTAATGCTAACCTTGGTGA+TGG | 0.655737 | 1.3:-44135593 | MS.gene034926:CDS |
| CCGGGTATCAAGGTTGACAA+GGG | 0.663397 | 1.3:-44136310 | MS.gene034926:CDS |
| TGAGGCAGTCTAAACAACCA+GGG | 0.687038 | 1.3:+44137033 | None:intergenic |
| GCGATTCGCTAGCATCAATG+TGG | 0.695493 | 1.3:-44137105 | MS.gene034926:CDS |
| GAGGCAGTCTAAACAACCAG+GGG | 0.707381 | 1.3:+44137034 | None:intergenic |
| ACTCTGAAGCACCATCACCA+AGG | 0.713624 | 1.3:+44135582 | None:intergenic |
| GGCATAACGAGCTAAACCGT+AGG | 0.727129 | 1.3:+44136120 | None:intergenic |
| CGAACAAGATAACACCACTG+AGG | 0.795503 | 1.3:+44137015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATAAAAATCAAA+AGG | + | chr1.3:44136023-44136042 | None:intergenic | 10.0% |
| !! | TTAAATAAGTAAATCCAAAA+AGG | + | chr1.3:44137196-44137215 | None:intergenic | 15.0% |
| !!! | ACTTATTTAAAGTAATCTAT+TGG | - | chr1.3:44137206-44137225 | MS.gene034926:intron | 15.0% |
| !!! | ATCTTCTTTATGAAATATTT+TGG | - | chr1.3:44136670-44136689 | MS.gene034926:intron | 15.0% |
| !!! | TTTTTATCTTTCATAGATAT+CGG | - | chr1.3:44137162-44137181 | MS.gene034926:CDS | 15.0% |
| !!! | TTTTTTTCTTTTCGTTTTAT+AGG | - | chr1.3:44135622-44135641 | MS.gene034926:CDS | 15.0% |
| !! | AATAAACTTAAAACAGCTTA+AGG | + | chr1.3:44137278-44137297 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAAGAAAAGACA+TGG | + | chr1.3:44137462-44137481 | None:intergenic | 20.0% |
| !!! | AATGTTTATTTTGAATTAGC+AGG | - | chr1.3:44137109-44137128 | MS.gene034926:CDS | 20.0% |
| !!! | TACTTTGTTTGACAAAATTA+CGG | - | chr1.3:44136243-44136262 | MS.gene034926:CDS | 20.0% |
| !!! | TCTCAGATTAAATTTTCATA+TGG | + | chr1.3:44136419-44136438 | None:intergenic | 20.0% |
| !!! | TTCTAAAAGTAGTAAAAAAG+AGG | - | chr1.3:44135944-44135963 | MS.gene034926:CDS | 20.0% |
| ! | AATGCAATGAACAAACTTAA+GGG | - | chr1.3:44138230-44138249 | MS.gene034926:intron | 25.0% |
| ! | AATTAAGATGTTTGACTCTT+TGG | + | chr1.3:44136477-44136496 | None:intergenic | 25.0% |
| ! | AGTAGTAAAAAAGAGGAAAA+AGG | - | chr1.3:44135951-44135970 | MS.gene034926:CDS | 25.0% |
| ! | GAAACATACACTAAGAAATA+AGG | - | chr1.3:44136355-44136374 | MS.gene034926:intron | 25.0% |
| ! | GTTCGATTCATAAAACTAAA+GGG | - | chr1.3:44136377-44136396 | MS.gene034926:intron | 25.0% |
| ! | TAATGCAATGAACAAACTTA+AGG | - | chr1.3:44138229-44138248 | MS.gene034926:intron | 25.0% |
| ! | TCAAGTAAAAATATGTCATG+TGG | - | chr1.3:44135870-44135889 | MS.gene034926:CDS | 25.0% |
| ! | TTCTTAGTGTATGTTTCAAT+TGG | + | chr1.3:44136352-44136371 | None:intergenic | 25.0% |
| !! | AATTTTGTACTTACTTCTTG+TGG | - | chr1.3:44136715-44136734 | MS.gene034926:intron | 25.0% |
| !! | ATATAAGCTATAAACCGTTT+TGG | + | chr1.3:44137326-44137345 | None:intergenic | 25.0% |
| !! | TCTATTTGTTGAAGTTTCTA+AGG | - | chr1.3:44136772-44136791 | MS.gene034926:intron | 25.0% |
| !! | TGAAAAGCTTAACTCAATTT+TGG | - | chr1.3:44136628-44136647 | MS.gene034926:intron | 25.0% |
| !!! | TATTTTGGAAAAAAGTTGCT+AGG | - | chr1.3:44136685-44136704 | MS.gene034926:intron | 25.0% |
| AATCGTTGACATCTAAATCT+AGG | + | chr1.3:44137143-44137162 | None:intergenic | 30.0% | |
| ACAGTTGAGAAAAAAGTTAG+AGG | + | chr1.3:44137626-44137645 | None:intergenic | 30.0% | |
| CATGAATGATCAAGAAACAA+AGG | + | chr1.3:44135657-44135676 | None:intergenic | 30.0% | |
| GGTTCGATTCATAAAACTAA+AGG | - | chr1.3:44136376-44136395 | MS.gene034926:intron | 30.0% | |
| TAAACACTTACGAGACTATT+TGG | - | chr1.3:44137231-44137250 | MS.gene034926:intron | 30.0% | |
| TAAATAAGCGCTTCTCATAT+AGG | + | chr1.3:44137406-44137425 | None:intergenic | 30.0% | |
| TCTTACATTCTCTTATGGAA+GGG | - | chr1.3:44138268-44138287 | MS.gene034926:intron | 30.0% | |
| TCTTTCAAGAGCAAATATGA+AGG | - | chr1.3:44135559-44135578 | MS.gene034926:CDS | 30.0% | |
| TGAAAGAAAAGACATGGAAA+AGG | + | chr1.3:44137456-44137475 | None:intergenic | 30.0% | |
| TTATTTCCATATGTTCTCCA+GGG | - | chr1.3:44137293-44137312 | MS.gene034926:intron | 30.0% | |
| TTTATTTCCATATGTTCTCC+AGG | - | chr1.3:44137292-44137311 | MS.gene034926:intron | 30.0% | |
| ! | ATGTTACACTAGCTTCATTT+AGG | - | chr1.3:44135674-44135693 | MS.gene034926:CDS | 30.0% |
| ! | ATTTTTGCCAAAAATTACCG+TGG | - | chr1.3:44136299-44136318 | MS.gene034926:CDS | 30.0% |
| ! | CAGAACTAGTTGAGTATTTT+GGG | - | chr1.3:44135845-44135864 | MS.gene034926:CDS | 30.0% |
| ! | CTATTTACCACGGTAATTTT+TGG | + | chr1.3:44136309-44136328 | None:intergenic | 30.0% |
| ! | TTCATCATCTAGTGTGTTTT+TGG | - | chr1.3:44135592-44135611 | MS.gene034926:CDS | 30.0% |
| !! | TTTCATAGATATCGGCTTTA+AGG | - | chr1.3:44137170-44137189 | MS.gene034926:CDS | 30.0% |
| !!! | CTTTTTTCTCAACTGTGTAT+AGG | - | chr1.3:44137630-44137649 | MS.gene034926:intron | 30.0% |
| !!! | TACTCTTTTGAAGCCTAATA+TGG | - | chr1.3:44138058-44138077 | MS.gene034926:intron | 30.0% |
| AACCACATTCTATTAGCTAG+TGG | + | chr1.3:44136186-44136205 | None:intergenic | 35.0% | |
| ACACTCTTCTCTATTCATCT+AGG | + | chr1.3:44135767-44135786 | None:intergenic | 35.0% | |
| ATTGAGATGCAAATGCATCA+CGG | + | chr1.3:44137558-44137577 | None:intergenic | 35.0% | |
| CTAATAATCCGTGCAACAAA+CGG | - | chr1.3:44136567-44136586 | MS.gene034926:intron | 35.0% | |
| CTCTTACATTCTCTTATGGA+AGG | - | chr1.3:44138267-44138286 | MS.gene034926:intron | 35.0% | |
| GTTGACATCTAAATCTAGGA+TGG | + | chr1.3:44137139-44137158 | None:intergenic | 35.0% | |
| TAAGAGAATGTAAGAGTCCA+AGG | + | chr1.3:44138263-44138282 | None:intergenic | 35.0% | |
| TACCTTCAAGAAGAACATGA+TGG | + | chr1.3:44138040-44138059 | None:intergenic | 35.0% | |
| TATCAAGGTAATGCTAACCT+TGG | - | chr1.3:44138404-44138423 | MS.gene034926:intron | 35.0% | |
| TGGACTCTTACATTCTCTTA+TGG | - | chr1.3:44138263-44138282 | MS.gene034926:intron | 35.0% | |
| TTCAGAGTCTCTTCATGTTA+AGG | - | chr1.3:44138436-44138455 | MS.gene034926:intron | 35.0% | |
| TTCTATTAGCAACTAGCAGT+TGG | - | chr1.3:44136204-44136223 | MS.gene034926:CDS | 35.0% | |
| TTCTTCAACACATCCACAAA+GGG | + | chr1.3:44137660-44137679 | None:intergenic | 35.0% | |
| TTTAACAAATTCTCGTCGTG+TGG | - | chr1.3:44137480-44137499 | MS.gene034926:intron | 35.0% | |
| TTTCTTCAACACATCCACAA+AGG | + | chr1.3:44137661-44137680 | None:intergenic | 35.0% | |
| ! | ACTTCAGCAAAGTACTCTTA+AGG | - | chr1.3:44138292-44138311 | MS.gene034926:intron | 35.0% |
| ! | ATTGCCAATGCTGCTTATAT+TGG | - | chr1.3:44136821-44136840 | MS.gene034926:intron | 35.0% |
| ! | CACTAGCTTCATTTAGGTAT+CGG | - | chr1.3:44135680-44135699 | MS.gene034926:CDS | 35.0% |
| ! | GACTGCAAACTTTTATACTG+CGG | - | chr1.3:44135902-44135921 | MS.gene034926:CDS | 35.0% |
| ! | GCAGAACTAGTTGAGTATTT+TGG | - | chr1.3:44135844-44135863 | MS.gene034926:CDS | 35.0% |
| AACTTAAGGGAAAGAAGCCT+TGG | - | chr1.3:44138243-44138262 | MS.gene034926:intron | 40.0% | |
| AAGCCTAATATGGTTACACC+AGG | - | chr1.3:44138068-44138087 | MS.gene034926:intron | 40.0% | |
| AATGGAGAAACCACAACTCA+AGG | - | chr1.3:44137738-44137757 | MS.gene034926:intron | 40.0% | |
| ACCATTCTCTTGGCATATGA+CGG | + | chr1.3:44137907-44137926 | None:intergenic | 40.0% | |
| AGAAACCACAACTCAAGGTT+TGG | - | chr1.3:44137743-44137762 | MS.gene034926:intron | 40.0% | |
| AGAATCTCAGGCTCTACAAT+TGG | + | chr1.3:44137936-44137955 | None:intergenic | 40.0% | |
| AGAGCCAATATAAGCAGCAT+TGG | + | chr1.3:44136828-44136847 | None:intergenic | 40.0% | |
| ATAACCTCAGGAGCAACTTT+AGG | + | chr1.3:44138104-44138123 | None:intergenic | 40.0% | |
| ATTTGGACCGATCTTTAGCA+CGG | + | chr1.3:44137832-44137851 | None:intergenic | 40.0% | |
| CACCACTAGCTAATAGAATG+TGG | - | chr1.3:44136181-44136200 | MS.gene034926:CDS | 40.0% | |
| CATATGCCAAGAGAATGGTT+TGG | - | chr1.3:44137908-44137927 | MS.gene034926:intron | 40.0% | |
| CCAGACAAGAAAACTATAGC+AGG | + | chr1.3:44138176-44138195 | None:intergenic | 40.0% | |
| CTATATCAAAAAACCGCTGC+AGG | - | chr1.3:44137019-44137038 | MS.gene034926:CDS | 40.0% | |
| GACAAAATTACGGTCGAATG+TGG | - | chr1.3:44136253-44136272 | MS.gene034926:CDS | 40.0% | |
| GACCATCATGTTCTTCTTGA+AGG | - | chr1.3:44138035-44138054 | MS.gene034926:intron | 40.0% | |
| GATCCTGGTGTAACCATATT+AGG | + | chr1.3:44138074-44138093 | None:intergenic | 40.0% | |
| GATGAATCTACTGGCACAAT+TGG | - | chr1.3:44136872-44136891 | MS.gene034926:intron | 40.0% | |
| GCAAATTCAGAAGCAACTCT+AGG | - | chr1.3:44138377-44138396 | MS.gene034926:intron | 40.0% | |
| GGCAGAATCACTATTTACCA+CGG | + | chr1.3:44136319-44136338 | None:intergenic | 40.0% | |
| GTTTCAATTGGCAGCGATTA+TGG | + | chr1.3:44136340-44136359 | None:intergenic | 40.0% | |
| TGAGAGTAGATTGCAATCTC+TGG | - | chr1.3:44136434-44136453 | MS.gene034926:intron | 40.0% | |
| TGTTCTTGCAGCATGTTACA+AGG | - | chr1.3:44138004-44138023 | MS.gene034926:intron | 40.0% | |
| TTGAGATGCAAATGCATCAC+GGG | + | chr1.3:44137557-44137576 | None:intergenic | 40.0% | |
| TTGGAACCAAACCATTCTCT+TGG | + | chr1.3:44137917-44137936 | None:intergenic | 40.0% | |
| ! | AGCAAAGTACTCTTAAGGCA+TGG | - | chr1.3:44138297-44138316 | MS.gene034926:intron | 40.0% |
| ! | ATTTATCGCCGTTTGTTGCA+CGG | + | chr1.3:44136578-44136597 | None:intergenic | 40.0% |
| ! | CAAAGTACTCTTAAGGCATG+GGG | - | chr1.3:44138299-44138318 | MS.gene034926:intron | 40.0% |
| ! | CCTGCTATAGTTTTCTTGTC+TGG | - | chr1.3:44138173-44138192 | MS.gene034926:intron | 40.0% |
| ! | GATGAATAGAGAAGAGTGTG+TGG | - | chr1.3:44135768-44135787 | MS.gene034926:CDS | 40.0% |
| ! | GCAAAGTACTCTTAAGGCAT+GGG | - | chr1.3:44138298-44138317 | MS.gene034926:intron | 40.0% |
| ! | GCAACTCTAGGAACTTATCA+AGG | - | chr1.3:44138389-44138408 | MS.gene034926:intron | 40.0% |
| ! | GCTATAGTTTTCTTGTCTGG+TGG | - | chr1.3:44138176-44138195 | MS.gene034926:intron | 40.0% |
| !! | AGCAAGATTCTAGTCTTGCT+TGG | - | chr1.3:44136149-44136168 | MS.gene034926:CDS | 40.0% |
| !! | ATTCTAGTCTTGCTTGGGAT+TGG | - | chr1.3:44136155-44136174 | MS.gene034926:CDS | 40.0% |
| !! | GCAAGATTCTAGTCTTGCTT+GGG | - | chr1.3:44136150-44136169 | MS.gene034926:CDS | 40.0% |
| !! | TGCAAGAAGTACTATGAAGC+CGG | - | chr1.3:44137783-44137802 | MS.gene034926:intron | 40.0% |
| !!! | TATCGGCTTTAAGGCCTTTT+TGG | - | chr1.3:44137179-44137198 | MS.gene034926:CDS | 40.0% |
| AAAAACCGCTGCAGGTAGTA+TGG | - | chr1.3:44137027-44137046 | MS.gene034926:CDS | 45.0% | |
| AAGAAAGCTGGAGTTCTTCC+GGG | - | chr1.3:44137675-44137694 | MS.gene034926:intron | 45.0% | |
| ACATGCTGCAAGAACACGTT+CGG | + | chr1.3:44138000-44138019 | None:intergenic | 45.0% | |
| ACTCAAGGTTTGGATGACCT+TGG | - | chr1.3:44137753-44137772 | MS.gene034926:intron | 45.0% | |
| AGAATCCATACTACCTGCAG+CGG | + | chr1.3:44137035-44137054 | None:intergenic | 45.0% | |
| AGCAATGCAGCTTGAGCTTT+AGG | + | chr1.3:44138344-44138363 | None:intergenic | 45.0% | |
| ATGCTACCCTGGAGAACATA+TGG | + | chr1.3:44137302-44137321 | None:intergenic | 45.0% | |
| CAGTAGATTCATCAGCAGCA+AGG | + | chr1.3:44136865-44136884 | None:intergenic | 45.0% | |
| CGAACAAGATAACACCACTG+AGG | + | chr1.3:44136991-44137010 | None:intergenic | 45.0% | |
| CGTGTGGTAGATGATTGATG+AGG | - | chr1.3:44137496-44137515 | MS.gene034926:intron | 45.0% | |
| CTCAAGCTGCATTGCTTGTT+AGG | - | chr1.3:44138348-44138367 | MS.gene034926:intron | 45.0% | |
| CTTGCTGCTGATGAATCTAC+TGG | - | chr1.3:44136863-44136882 | MS.gene034926:intron | 45.0% | |
| GAAGAAAGCTGGAGTTCTTC+CGG | - | chr1.3:44137674-44137693 | MS.gene034926:intron | 45.0% | |
| GACAAGGGAGATGGTTCATT+TGG | + | chr1.3:44137849-44137868 | None:intergenic | 45.0% | |
| GATCCATCCACTAGAATCTC+AGG | + | chr1.3:44137948-44137967 | None:intergenic | 45.0% | |
| GCAATCTCTGGTGATACTTG+AGG | - | chr1.3:44136446-44136465 | MS.gene034926:intron | 45.0% | |
| GGTAATGCTAACCTTGGTGA+TGG | - | chr1.3:44138410-44138429 | MS.gene034926:intron | 45.0% | |
| GTGGATGTGTTGAAGAAAGC+TGG | - | chr1.3:44137663-44137682 | MS.gene034926:intron | 45.0% | |
| TAGATGATTGATGAGGTCCG+AGG | - | chr1.3:44137503-44137522 | MS.gene034926:intron | 45.0% | |
| TCAATCCACGAAAACGCCTA+CGG | - | chr1.3:44137867-44137886 | MS.gene034926:intron | 45.0% | |
| TCCAGGGTAGCATACCAAAA+CGG | - | chr1.3:44137309-44137328 | MS.gene034926:intron | 45.0% | |
| TGAGGCAGTCTAAACAACCA+GGG | + | chr1.3:44136973-44136992 | None:intergenic | 45.0% | |
| TGTAGAGCCTGAGATTCTAG+TGG | - | chr1.3:44137938-44137957 | MS.gene034926:intron | 45.0% | |
| TGTGGTTTCTCCATTTGTGC+CGG | + | chr1.3:44137733-44137752 | None:intergenic | 45.0% | |
| ! | ACTTTAGGAGAGTCTGATCC+TGG | + | chr1.3:44138089-44138108 | None:intergenic | 45.0% |
| ! | ATTTGTGCCGGCAAGTTCAA+CGG | + | chr1.3:44137721-44137740 | None:intergenic | 45.0% |
| ! | GTCATCCAAACCTTGAGTTG+TGG | + | chr1.3:44137751-44137770 | None:intergenic | 45.0% |
| ! | TTCCAACTAAGTTGACGCCT+CGG | + | chr1.3:44137523-44137542 | None:intergenic | 45.0% |
| !! | GCGTTTTCGTGGATTGACAA+GGG | + | chr1.3:44137864-44137883 | None:intergenic | 45.0% |
| !! | GTGTATAGGAGTACCCTTTG+TGG | - | chr1.3:44137644-44137663 | MS.gene034926:intron | 45.0% |
| !! | TATATTGGCTCTCCCGGAAA+GGG | - | chr1.3:44136836-44136855 | MS.gene034926:intron | 45.0% |
| !! | TTATATTGGCTCTCCCGGAA+AGG | - | chr1.3:44136835-44136854 | MS.gene034926:intron | 45.0% |
| AAGGGAACCGTTGAACTTGC+CGG | - | chr1.3:44137711-44137730 | MS.gene034926:intron | 50.0% | |
| ACAAAGCTCGGACTGTGTGT+TGG | + | chr1.3:44138130-44138149 | None:intergenic | 50.0% | |
| ACTTCTTGCACCTCTGACCA+AGG | + | chr1.3:44137773-44137792 | None:intergenic | 50.0% | |
| AGCAGCAAGGATACCCTTTC+CGG | + | chr1.3:44136852-44136871 | None:intergenic | 50.0% | |
| AGTACTATGAAGCCGGTGCA+AGG | - | chr1.3:44137790-44137809 | MS.gene034926:intron | 50.0% | |
| AGTACTCTTAAGGCATGGGG+TGG | - | chr1.3:44138302-44138321 | MS.gene034926:intron | 50.0% | |
| CAAAGCTCGGACTGTGTGTT+GGG | + | chr1.3:44138129-44138148 | None:intergenic | 50.0% | |
| CCATTTAGCGAACCTTGCAC+CGG | + | chr1.3:44137805-44137824 | None:intergenic | 50.0% | |
| CCCTTGTCAACCTTGATACC+CGG | + | chr1.3:44137696-44137715 | None:intergenic | 50.0% | |
| CCGGGTATCAAGGTTGACAA+GGG | - | chr1.3:44137693-44137712 | MS.gene034926:intron | 50.0% | |
| CTCTCCTAAAGTTGCTCCTG+AGG | - | chr1.3:44138097-44138116 | MS.gene034926:intron | 50.0% | |
| CTGAGGCAGTCTAAACAACC+AGG | + | chr1.3:44136974-44136993 | None:intergenic | 50.0% | |
| GAACGGTTCGCAACAAAGCT+CGG | + | chr1.3:44138142-44138161 | None:intergenic | 50.0% | |
| GAGCCTGAGATTCTAGTGGA+TGG | - | chr1.3:44137942-44137961 | MS.gene034926:intron | 50.0% | |
| GAGGCAGTCTAAACAACCAG+GGG | + | chr1.3:44136972-44136991 | None:intergenic | 50.0% | |
| GATGCAAATGCATCACGGGA+AGG | + | chr1.3:44137553-44137572 | None:intergenic | 50.0% | |
| GCCGTCATATGCCAAGAGAA+TGG | - | chr1.3:44137903-44137922 | MS.gene034926:intron | 50.0% | |
| GCGATTCGCTAGCATCAATG+TGG | - | chr1.3:44136898-44136917 | MS.gene034926:intron | 50.0% | |
| GGCATAACGAGCTAAACCGT+AGG | + | chr1.3:44137886-44137905 | None:intergenic | 50.0% | |
| GGTTGTTTAGACTGCCTCAG+TGG | - | chr1.3:44136974-44136993 | MS.gene034926:intron | 50.0% | |
| GTGTGTTGGGCTATAACCTC+AGG | + | chr1.3:44138116-44138135 | None:intergenic | 50.0% | |
| GTTGAACTTGCCGGCACAAA+TGG | - | chr1.3:44137720-44137739 | MS.gene034926:intron | 50.0% | |
| GTTTGGATGACCTTGGTCAG+AGG | - | chr1.3:44137760-44137779 | MS.gene034926:intron | 50.0% | |
| TCCGGGTATCAAGGTTGACA+AGG | - | chr1.3:44137692-44137711 | MS.gene034926:intron | 50.0% | |
| TGGAGTTCTTCCGGGTATCA+AGG | - | chr1.3:44137683-44137702 | MS.gene034926:intron | 50.0% | |
| ! | CTAAACCGTAGGCGTTTTCG+TGG | + | chr1.3:44137875-44137894 | None:intergenic | 50.0% |
| ! | GTCTGGTGGACAAAGTGAAG+AGG | - | chr1.3:44138190-44138209 | MS.gene034926:intron | 50.0% |
| ! | TCGTGGATTGACAAGGGAGA+TGG | + | chr1.3:44137858-44137877 | None:intergenic | 50.0% |
| ! | TTCGCGAAGAGTACGTCTGT+TGG | + | chr1.3:44136936-44136955 | None:intergenic | 50.0% |
| !! | ACCGTTTTGGTATGCTACCC+TGG | + | chr1.3:44137313-44137332 | None:intergenic | 50.0% |
| !! | ACTCTGAAGCACCATCACCA+AGG | + | chr1.3:44138424-44138443 | None:intergenic | 50.0% |
| !! | GCTGCTTATATTGGCTCTCC+CGG | - | chr1.3:44136830-44136849 | MS.gene034926:intron | 50.0% |
| !! | GGCGTTTTCGTGGATTGACA+AGG | + | chr1.3:44137865-44137884 | None:intergenic | 50.0% |
| ACTATAGCAGGAACCGCAGC+AGG | + | chr1.3:44138164-44138183 | None:intergenic | 55.0% | |
| CCGGTGCAAGGTTCGCTAAA+TGG | - | chr1.3:44137802-44137821 | MS.gene034926:intron | 55.0% | |
| GAACTCTTGTTCACTGCCCC+TGG | - | chr1.3:44136953-44136972 | MS.gene034926:intron | 55.0% | |
| GCAGCAAGGATACCCTTTCC+GGG | + | chr1.3:44136851-44136870 | None:intergenic | 55.0% | |
| TGGCGTGCCGTGCTAAAGAT+CGG | - | chr1.3:44137822-44137841 | MS.gene034926:intron | 55.0% | |
| ! | GTCCGAGGCGTCAACTTAGT+TGG | - | chr1.3:44137518-44137537 | MS.gene034926:intron | 55.0% |
| AGCAGGAACCGCAGCAGGAA+CGG | + | chr1.3:44138159-44138178 | None:intergenic | 60.0% | |
| GTTGCGAACCGTTCCTGCTG+CGG | - | chr1.3:44138148-44138167 | MS.gene034926:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 44135553 | 44138472 | 44135553 | ID=MS.gene034926 |
| chr1.3 | mRNA | 44135553 | 44138472 | 44135553 | ID=MS.gene034926.t1;Parent=MS.gene034926 |
| chr1.3 | exon | 44138445 | 44138472 | 44138445 | ID=MS.gene034926.t1.exon1;Parent=MS.gene034926.t1 |
| chr1.3 | CDS | 44138445 | 44138472 | 44138445 | ID=cds.MS.gene034926.t1;Parent=MS.gene034926.t1 |
| chr1.3 | exon | 44136985 | 44137212 | 44136985 | ID=MS.gene034926.t1.exon2;Parent=MS.gene034926.t1 |
| chr1.3 | CDS | 44136985 | 44137212 | 44136985 | ID=cds.MS.gene034926.t1;Parent=MS.gene034926.t1 |
| chr1.3 | exon | 44135553 | 44136373 | 44135553 | ID=MS.gene034926.t1.exon3;Parent=MS.gene034926.t1 |
| chr1.3 | CDS | 44135553 | 44136373 | 44135553 | ID=cds.MS.gene034926.t1;Parent=MS.gene034926.t1 |
| Gene Sequence |
| Protein sequence |
