AlfalfaGEDB | MS.gene035121

M. sativa cultivar XinJiangDaYe / MS.gene035121

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF01657.20 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035121.t1	XP_024625360.1	93.7	600	38	0	1	600	1	600	0.00E+00	1113.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035121.t1	Q9FNE1	57.1	595	239	7	1	585	61	649	2.5e-184	646.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035121.t1	A0A072TZ02	94.0	600	36	0	1	600	55	654	0.0e+00	1110.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene035121	MS.gene74963	PPI
MS.gene035121	MS.gene060422	PPI
MS.gene035121	MS.gene62577	PPI
MS.gene035121	MS.gene029315	PPI
MS.gene035121	MS.gene76218	PPI
MS.gene035121	MS.gene000889	PPI
MS.gene035121	MS.gene040288	PPI
MS.gene035121	MS.gene065046	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035121.t1	MTR_7g033135	94.833	600	31	0	1	600	55	654	0.0	1131
MS.gene035121.t1	MTR_4g105540	45.649	609	307	8	1	590	58	661	0.0	537
MS.gene035121.t1	MTR_5g033690	46.411	599	275	11	1	570	59	640	3.82e-177	516
MS.gene035121.t1	MTR_3g064110	40.250	559	298	12	24	553	86	637	2.93e-129	394
MS.gene035121.t1	MTR_3g064090	40.399	552	303	10	22	553	79	624	1.15e-128	392
MS.gene035121.t1	MTR_3g064080	38.584	565	322	10	5	549	58	617	2.32e-127	389
MS.gene035121.t1	MTR_1g104890	35.626	567	326	11	25	564	91	645	2.52e-115	358
MS.gene035121.t1	MTR_1g105655	38.051	544	310	11	28	545	89	631	8.03e-112	349
MS.gene035121.t1	MTR_8g041660	37.177	581	333	11	9	562	65	640	3.50e-110	344
MS.gene035121.t1	MTR_8g041910	36.833	562	318	12	15	544	81	637	2.13e-109	343

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035121.t1	AT5G40380	58.007	562	223	5	1	555	61	616	0.0	662
MS.gene035121.t1	AT5G40380	60.000	475	184	3	1	475	61	529	0.0	585
MS.gene035121.t1	AT1G70530	49.827	578	269	9	1	562	52	624	0.0	583
MS.gene035121.t1	AT5G40380	58.920	426	169	3	1	426	61	480	2.89e-178	513
MS.gene035121.t1	AT1G70520	46.737	567	284	6	1	551	59	623	2.26e-175	512
MS.gene035121.t1	AT1G70530	51.429	490	219	7	1	475	52	537	2.30e-175	508
MS.gene035121.t1	AT1G70530	49.887	441	202	7	1	426	52	488	4.66e-147	434
MS.gene035121.t1	AT4G28670	41.802	555	284	9	26	549	79	625	1.15e-140	422
MS.gene035121.t1	AT4G05200	35.638	564	322	11	26	552	82	641	1.45e-108	341
MS.gene035121.t1	AT4G05200	35.638	564	322	11	26	552	100	659	2.33e-108	341

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Find 110 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTACCTTCACTATT+TGG	0.196588	7.4:-69313656	None:intergenic
AAAATAGGGCAAGGAGGATC+AGG	0.447436	7.4:+69314605	MS.gene035121:CDS
AAAGCTGATGTCTATAGTTT+TGG	0.277604	7.4:+69315726	MS.gene035121:CDS
AAATGCTGTGAAGAAGGTTA+GGG	0.494496	7.4:+69313625	MS.gene035121:CDS
AAATTACTTTATCCCTCAAA+GGG	0.514048	7.4:-69313424	None:intergenic
AAATTCTCAATTGGAAGCAG+AGG	0.552125	7.4:+69315150	MS.gene035121:CDS
AAATTGGTCCAAACTCTTGT+TGG	0.438105	7.4:-69314822	None:intergenic
AACTATAATTATCGTAACGA+AGG	0.599965	7.4:-69313382	None:intergenic
AAGACTATCGATTCTAGCGT+GGG	0.593578	7.4:+69316179	MS.gene035121:CDS
AAGGAATAATGTCATCAGAG+AGG	0.718762	7.4:+69315779	MS.gene035121:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGCAGAGCTCAAAAA+TGG	-	chr7.4:69316353-69316372	None:intergenic	30.0%
AATGAAGTAGATTTGATCAG+TGG	+	chr7.4:69314719-69314738	MS.gene035121:CDS	30.0%
ACACATGAAACTATACTGAT+TGG	+	chr7.4:69315837-69315856	MS.gene035121:intron	30.0%
ACTACCCAAAATCAAGTAAA+AGG	-	chr7.4:69314047-69314066	None:intergenic	30.0%
ACTCAATCAGTAAATATCTC+AGG	+	chr7.4:69313218-69313237	MS.gene035121:CDS	30.0%
AGTTTGGACCAATTTATCTT+TGG	+	chr7.4:69314830-69314849	MS.gene035121:CDS	30.0%
CAAATTACTTTATCCCTCAA+AGG	-	chr7.4:69313428-69313447	None:intergenic	30.0%
CTTTCTTGATTCTGATATGT+TGG	+	chr7.4:69313768-69313787	MS.gene035121:intron	30.0%
GAAAGAGAGATTTCAAGAAT+TGG	-	chr7.4:69316100-69316119	None:intergenic	30.0%
GAGTACTAACAATACGATTT+AGG	+	chr7.4:69314951-69314970	MS.gene035121:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	69313176	69316526	69313176	ID=MS.gene035121
chr7.4	mRNA	69313176	69316526	69313176	ID=MS.gene035121.t1;Parent=MS.gene035121
chr7.4	exon	69313176	69313752	69313176	ID=MS.gene035121.t1.exon1;Parent=MS.gene035121.t1
chr7.4	CDS	69313176	69313752	69313176	ID=cds.MS.gene035121.t1;Parent=MS.gene035121.t1
chr7.4	exon	69314294	69314407	69314294	ID=MS.gene035121.t1.exon2;Parent=MS.gene035121.t1
chr7.4	CDS	69314294	69314407	69314294	ID=cds.MS.gene035121.t1;Parent=MS.gene035121.t1
chr7.4	exon	69314501	69314851	69314501	ID=MS.gene035121.t1.exon3;Parent=MS.gene035121.t1
chr7.4	CDS	69314501	69314851	69314501	ID=cds.MS.gene035121.t1;Parent=MS.gene035121.t1
chr7.4	exon	69315135	69315369	69315135	ID=MS.gene035121.t1.exon4;Parent=MS.gene035121.t1
chr7.4	CDS	69315135	69315369	69315135	ID=cds.MS.gene035121.t1;Parent=MS.gene035121.t1
chr7.4	exon	69315680	69315824	69315680	ID=MS.gene035121.t1.exon5;Parent=MS.gene035121.t1
chr7.4	CDS	69315680	69315824	69315680	ID=cds.MS.gene035121.t1;Parent=MS.gene035121.t1
chr7.4	exon	69316146	69316526	69316146	ID=MS.gene035121.t1.exon6;Parent=MS.gene035121.t1
chr7.4	CDS	69316146	69316526	69316146	ID=cds.MS.gene035121.t1;Parent=MS.gene035121.t1

Gene Sequence

>MS.gene035121

ATGGAGAATCTCTCACAGCTTGTGACTGATCATAATTGGGGAACTCAATCAGTAAATATCTCAGGATCTGTTACAATCTATGGCTTTGCACAATGTTTTCAAGATCTCTCTCATACTGATTGTCTTCTTTGCTATGCTGCAAGTCGGACTAAGCTCCCTCGTTGCCTTCCTTCGCTGTCTGCTCGCATCTATCTTGATGGTTGCTTCCTTCGTTACGATAATTATAGTTTTTACTCGGAGGAAACTGACCCTTTGAGGGATAAAGTAATTTGCACTTCTTCTGAGAGGTTGGAGGTGCAGATGGAAAGGAGTGTTGAAAGAGTGGTTGATGTTGTGGCGAAGGATGCTGGTGATGGTGGTGGATTTGCTGTTGGAGAAGTTGAGGGTGTTTATGCCTTAGCACAATGCTGGAAAACTCTTGGGATTGATGGGTGTAGAGATTGTTTAGGAAATGCTGTGAAGAAGGTTAGGGGGTGTTTGCCAAATAGTGAAGGTAGGGTTTTGAATGCTGGATGTTATTTGAGATACTCAACACACAAATTTTTCAATGAAGGAGGTGGAAAAGATGGTGGAAATGGTGAGAAACTGTGTTCTTTCTTGATTCTGATATGTTGGTTGTTTTCGAGTAGAACTGATTCTAGCCTCAAAAATTGATTCTACCTGAAGCTATGATTTGTAATTTTTCATTCTATAACTTTTACCTTAATATATCCAAACATAAATCAATTTTCTTCGGTGATAATTCAATTTTACAGAATCAATTCACTTAAAAAAACCAAACATACACAATGAACCTGAAAAACTAATGTTAGCTTATAATTTTGACTAGAGCGAGTATATAGGATCACGGAGTAGCTGCTGCAACTAACCTTTTACTTGATTTTGGGTAGTTTGTAATGAGTTAAAATGACAATTGGAATTGAAATTTGAAACATACCTTTGGATTTTTATGTATTTTGCTTTGATGTTATTCTTTCAAATTTGTTCCACTTTGAGAAGCAAGATTCTTTCATACTTTTACATTTTCCTAAATAGATCCTGTGATCTTATCTTAAACTAAATACAATACTTTGTCTTTAGCATTTATTGATTTCATTGCTTGTGTTTCATTATTTCAGCATCTTTAAGAAGAGGAGTTATAATAGCAGCAGTGTTAGCAATAGCTGCAATTATTATGCTTGTTCTCTCAGTCTCTTTTGCAGTCTACAAAAAATTGTCAAATCTGAAAAAAGGTTAACATTTCATATTGAAAACGAAATTATTCACACACTATAAATTGTTTGTATGTTAACTTTCTTTCGTTGTTTATCTTTTTCTTTATGCAGAAAAAAATAACCGGGATCAAATTTCATCGTCCATAACAAAATCAAGTTTGAATTACAAATACGAAACGCTTGAGAAGGCAACAGATTATTTCAACTCTTCAAGAAAAATAGGGCAAGGAGGATCAGGTTCAGTTTTCAAAGGTATTCTCCCTAACGGAAACGTTGTTGCAGTAAAGAGATTGGTATTCAATAATAGGCAATGGGTGGATGAGTTCTTCAATGAAGTAGATTTGATCAGTGGAATTGAACACAAAAACCTTGTCAAACTATTAGGCTGTAGCATTGAAGGACCTGAGAGCCTACTTGTATACGAGTACTTACCCAACAAGAGTTTGGACCAATTTATCTTTGGTAAGTTCTCTTACATCTGTTTATCTTAACACATACATTACATAGGTTCTAAAACATGTATCATCACAAGTGTTTATGTATGTAGTAGCGATGACACTCGAGTACTAACAATACGATTTAGGCGAGGAAAAAAGTTATAAAGAGATGATACATGTTCGTCGGAACATTTTGTTATTTTTGGTAACTAGATATATACCGACAGGTCAATATGTTAGCATATAGAGATGGGTAGATAGATAAAGTTTAGGGATTGTGGAAAATAAATCTTTGTTTTCCTTTTCAGAGAAGAGCAGAACTCAAATTCTCAATTGGAAGCAGAGGTTTAACATCATTCGCGGAACAGCAGAAGGGCTTGCTTATCTTCATCAAGGGTCTATCAAGAGAATCATCCATAGAGATATCAAAAGCAGCAATGTTCTTCTCGATGATAATCTCTCGCCTAAGATTGCAGATTTCGGCCTTGCGCGATGTTTTGCTACTGATAAAACACATTTGAGTACAGGAATTGCTGGAACACTGTAAGTCCTTGACTTTAGGTAGAATATATGATATTATGCATGTAACTAAAAAAATAATAATGTAGTCTGCATTATCAATCTTTGTTATATAATCAAAACCTATAAGTTTATTATCTTGAAGAAATAGGTCAAGAATGATGAGTAGTTATTTTTTGTATCAATAATTCTAGTAGAACCCTTCATGTGAAAAAGCATTCATTGCATTTTAAAAACCAATTTAAACAAATGTCTTAGGTGTTACTTAATGCCAGTACAGTGTAATATATTATTCAAAGTCCGATTAACAGTTGCATTTTCATTCTTGGAGCAGTGGTTACATGGCTCCGGAGTACCTAATTCGAGGACATCTTACAGATAAAGCTGATGTCTATAGTTTTGGAGTGCTTGTTCTCGAGATTGTATGTGGCAGAAGGAATAATGTCATCAGAGAGGACTCTGGATCACTTCTACAAACTGTAAGACTTTAAACACATGAAACTATACTGATTGGTTAATAATTATCCTTATAAAATTGAAAATATACTGATTTTTTCACTAAAACTTTCACTTTTTAGTCCAAATATATCTTATGGAATCAAAGCTTTATGCTTGTTATTCTCTTCGTTCCACAATATAAGTAACTTCAGAAAATAAAATTGTCGATTATATAAGTCGTCTTACACTCTCATCAGAGAAGTATTAAATTTGTATTCCGATTAAATACCTTGCTACTCATCACGCTCATTATCCAATTCTTGAAATCTCTCTTTCCCATATCATTGTCTTGTTGGCACCAGGTTTGGAAACATTACCGATCAAACACATTAGTCAAGACTATCGATTCTAGCGTGGGAGATGATATTCCTGAAGTTGAGGCATCAAGGGTGTTACACATTGGTTTGCTTTGCACACAAGCTTCTGCTTCCCTTAGACCATCCATGACTCAAGTTGTTAAAATGTTAAGTAATTCAGATTTAGATGTTCCTACACCAAATCAGCCACCATTTTTGAGCTCTGCAATTTTAGACTCAGAAAGTTCCATTAGATCTTATAGTACAAACAGCTTTGTATCCAATGCTTTAAAAACGATTGGAGTTTCATACAGCTATTCGGAGTCCTCTTGTTCTCGCAACTCAGACGAGCCATCAAGAAGTGAAGAACCAACTTTCCAAGCTTGA

Protein sequence

>MS.gene035121.t1

MENLSQLVTDHNWGTQSVNISGSVTIYGFAQCFQDLSHTDCLLCYAASRTKLPRCLPSLSARIYLDGCFLRYDNYSFYSEETDPLRDKVICTSSERLEVQMERSVERVVDVVAKDAGDGGGFAVGEVEGVYALAQCWKTLGIDGCRDCLGNAVKKVRGCLPNSEGRVLNAGCYLRYSTHKFFNEGGGKDGGNASLRRGVIIAAVLAIAAIIMLVLSVSFAVYKKLSNLKKEKNNRDQISSSITKSSLNYKYETLEKATDYFNSSRKIGQGGSGSVFKGILPNGNVVAVKRLVFNNRQWVDEFFNEVDLISGIEHKNLVKLLGCSIEGPESLLVYEYLPNKSLDQFIFEKSRTQILNWKQRFNIIRGTAEGLAYLHQGSIKRIIHRDIKSSNVLLDDNLSPKIADFGLARCFATDKTHLSTGIAGTLGYMAPEYLIRGHLTDKADVYSFGVLVLEIVCGRRNNVIREDSGSLLQTVWKHYRSNTLVKTIDSSVGDDIPEVEASRVLHIGLLCTQASASLRPSMTQVVKMLSNSDLDVPTPNQPPFLSSAILDSESSIRSYSTNSFVSNALKTIGVSYSYSESSCSRNSDEPSRSEEPTFQA