AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035654

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035654.t1 MTR_4g129335 95.109 184 6 3 1 183 1 182 1.03e-97 280
MS.gene035654.t1 MTR_4g129370 95.109 184 6 3 1 183 1 182 1.03e-97 280
MS.gene035654.t1 MTR_3g078120 32.394 142 83 4 29 159 1 140 5.76e-16 71.6
MS.gene035654.t1 MTR_6g007680 31.757 148 88 6 31 177 1 136 2.25e-13 64.7
MS.gene035654.t1 MTR_3g114500 37.607 117 64 5 33 147 5 114 3.92e-13 63.5
MS.gene035654.t1 MTR_7g076250 34.667 75 48 1 81 154 66 140 1.77e-12 63.2
MS.gene035654.t1 MTR_2g055790 35.772 123 68 4 36 153 33 149 2.22e-12 63.2
MS.gene035654.t1 MTR_4g063070 40.000 65 37 1 84 146 314 378 2.82e-12 64.3
MS.gene035654.t1 MTR_5g064980 30.469 128 72 3 31 146 57 179 4.57e-12 63.9
MS.gene035654.t1 MTR_8g009190 33.577 137 73 4 26 149 19 150 4.66e-12 63.5
MS.gene035654.t1 MTR_2g041200 30.328 122 74 3 39 149 33 154 5.63e-12 61.6
MS.gene035654.t1 MTR_3g078470 40.845 71 40 1 84 152 82 152 9.23e-12 61.6
MS.gene035654.t1 MTR_5g064990 28.369 141 88 3 31 163 67 202 1.23e-11 62.4
MS.gene035654.t1 MTR_6g007670 40.278 72 42 1 83 153 150 221 1.27e-11 61.6
MS.gene035654.t1 MTR_4g108830 42.424 66 37 1 84 149 155 219 1.58e-11 61.2
MS.gene035654.t1 MTR_4g108830 39.506 81 47 2 69 149 113 191 1.92e-11 60.5
MS.gene035654.t1 MTR_3g110190 29.371 143 70 4 27 152 12 140 1.96e-11 62.0
MS.gene035654.t1 MTR_7g116200 34.568 81 52 1 84 164 74 153 2.03e-11 60.1
MS.gene035654.t1 MTR_8g066740 31.206 141 84 5 29 159 22 159 2.24e-11 61.6
MS.gene035654.t1 MTR_1g026070 33.043 115 70 3 33 146 5 113 2.26e-11 58.9
MS.gene035654.t1 MTR_7g073200 35.065 77 50 0 82 158 85 161 2.52e-11 59.7
MS.gene035654.t1 MTR_8g073120 30.579 121 78 3 34 148 22 142 2.84e-11 60.1
MS.gene035654.t1 MTR_1g492830 26.241 141 100 1 21 157 1 141 3.19e-11 60.5
MS.gene035654.t1 MTR_7g096690 29.932 147 83 5 22 154 10 150 4.51e-11 60.8
MS.gene035654.t1 MTR_4g120270 41.772 79 42 2 84 162 86 160 4.89e-11 60.5
MS.gene035654.t1 MTR_8g066780 31.288 163 75 8 11 153 47 192 4.98e-11 60.8
MS.gene035654.t1 MTR_4g106680 30.573 157 92 5 26 165 40 196 4.99e-11 60.5
MS.gene035654.t1 MTR_2g436100 35.833 120 73 3 64 179 78 197 5.45e-11 60.5
MS.gene035654.t1 MTR_4g030070 34.940 83 54 0 74 156 80 162 5.90e-11 59.7
MS.gene035654.t1 MTR_2g090905 36.585 82 46 1 81 156 42 123 7.33e-11 57.4
MS.gene035654.t1 MTR_7g116220 38.806 67 38 1 84 147 76 142 7.52e-11 58.5
MS.gene035654.t1 MTR_8g089880 36.250 80 51 0 84 163 133 212 7.84e-11 59.7
MS.gene035654.t1 MTR_5g092750 46.939 49 26 0 101 149 182 230 8.14e-11 59.3
MS.gene035654.t1 MTR_2g035800 40.000 80 48 0 82 161 80 159 8.56e-11 58.2
MS.gene035654.t1 MTR_5g022920 30.702 114 58 2 54 146 118 231 9.09e-11 59.3
MS.gene035654.t1 MTR_3g464780 40.278 72 42 1 99 170 127 197 9.17e-11 59.3
MS.gene035654.t1 MTR_3g099650 31.746 126 69 5 30 146 61 178 9.48e-11 60.1
MS.gene035654.t1 MTR_6g087150 30.645 124 77 2 42 156 48 171 9.56e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035654.t1 AT2G18670 40.881 159 81 3 16 173 24 170 1.92e-32 115
MS.gene035654.t1 AT4G30370 40.000 130 77 1 20 149 32 160 9.27e-26 97.8
MS.gene035654.t1 AT2G42360 33.553 152 90 5 17 160 20 168 6.28e-15 70.5
MS.gene035654.t1 AT2G17450 30.872 149 84 6 15 152 13 153 5.07e-14 67.4
MS.gene035654.t1 AT3G10910 26.437 174 110 3 4 165 7 174 6.78e-14 67.0
MS.gene035654.t1 AT4G09100 30.894 123 66 4 39 149 15 130 5.04e-13 63.5
MS.gene035654.t1 AT3G20395 41.096 73 41 1 84 156 153 223 6.23e-13 65.1
MS.gene035654.t1 AT2G27940 40.625 64 37 1 84 147 121 183 1.46e-12 64.3
MS.gene035654.t1 AT4G10150 27.152 151 98 2 8 146 3 153 2.01e-12 63.9
MS.gene035654.t1 AT3G62690 41.333 75 43 1 81 155 90 163 2.43e-12 63.9
MS.gene035654.t1 AT3G61460 31.915 141 82 3 39 178 34 161 6.69e-12 61.2
MS.gene035654.t1 AT5G01880 40.909 66 39 0 81 146 82 147 6.82e-12 60.8
MS.gene035654.t1 AT5G42200 30.303 132 77 3 29 152 28 152 6.97e-12 61.2
MS.gene035654.t1 AT5G05280 44.828 58 32 0 102 159 111 168 1.05e-11 60.8
MS.gene035654.t1 AT4G10160 35.443 79 51 0 68 146 61 139 1.75e-11 61.2
MS.gene035654.t1 AT3G05200 28.485 165 100 5 6 162 30 184 2.61e-11 61.6
MS.gene035654.t1 AT1G63840 34.884 129 67 6 32 147 10 134 4.90e-11 58.9
MS.gene035654.t1 AT5G27420 27.439 164 105 4 9 164 26 183 6.42e-11 60.5
MS.gene035654.t1 AT5G57750 30.939 181 92 9 25 182 31 201 7.02e-11 59.3
MS.gene035654.t1 AT5G66070 33.036 112 54 2 54 146 109 218 9.01e-11 58.9
MS.gene035654.t1 AT5G66070 33.036 112 54 2 54 146 109 218 9.01e-11 58.9
MS.gene035654.t1 AT2G17730 31.818 132 65 3 43 149 110 241 9.20e-11 59.3

Find 78 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAGGTTCTTCACGATTT+TGG 0.131959 8.1:+3509309 MS.gene035654:CDS
GGAAAAGGGAGAGGAGATTA+GGG 0.247255 8.1:-3508872 None:intergenic
AGGAAAAGGGAGAGGAGATT+AGG 0.279449 8.1:-3508873 None:intergenic
AGGAGATTAGGGTTTGGTTT+TGG 0.298382 8.1:-3508861 None:intergenic
TTCAGGATCGCCATGGTGTT+GGG 0.309331 8.1:-3508832 None:intergenic
TTCTCGTTGTGCTGTTTGTT+TGG 0.334977 8.1:+3509121 MS.gene035654:CDS
TCCCTCTTCTTTCTCTTCCT+CGG 0.367925 8.1:+3508924 MS.gene035654:CDS
CGCTCAACCTTCACAAGGTT+CGG 0.370509 8.1:+3509274 MS.gene035654:CDS
TATTGATACGTGGCTTCTTA+AGG 0.375191 8.1:+3509211 MS.gene035654:CDS
CCTTTGGTGATCCGGAAGTT+GGG 0.379531 8.1:-3509080 None:intergenic
TGATGATGGGTTTGAGGAAA+AGG 0.391533 8.1:-3508887 None:intergenic
TCACAAGCTATTATTACAAA+AGG 0.402643 8.1:-3509361 None:intergenic
TCAACAACCTCCCCAACTTC+CGG 0.405396 8.1:+3509069 MS.gene035654:CDS
ACAAACAGCACAACGAGAAT+CGG 0.409644 8.1:-3509117 None:intergenic
AGGGAGAGGAGATTAGGGTT+TGG 0.413011 8.1:-3508867 None:intergenic
GACGGAAACGGAGGCGGTGG+AGG 0.416739 8.1:-3508992 None:intergenic
ACCTTTGGTGATCCGGAAGT+TGG 0.426029 8.1:-3509081 None:intergenic
AAACGGAACCTTTGGTGATC+CGG 0.428137 8.1:-3509088 None:intergenic
TAGGACGGAAACGGAGGCGG+TGG 0.438475 8.1:-3508995 None:intergenic
CGTTGTGCTGTTTGTTTGGA+CGG 0.442179 8.1:+3509125 MS.gene035654:CDS
GAAGAGGTTGAGGAGGAGAA+AGG 0.454979 8.1:-3508955 None:intergenic
GGGTTCAGAAACGGAACCTT+TGG 0.469591 8.1:-3509096 None:intergenic
ACGGAGGCGGTGGAGGGCGC+CGG 0.472988 8.1:-3508985 None:intergenic
CGGCTAAGAGGAAGAGGTTG+AGG 0.481229 8.1:-3508965 None:intergenic
ACGAGAATCGGGTTCAGAAA+CGG 0.482086 8.1:-3509105 None:intergenic
GTTCAGGATCGCCATGGTGT+TGG 0.482441 8.1:-3508833 None:intergenic
GAAGCATGATGATGGGTTTG+AGG 0.492199 8.1:-3508893 None:intergenic
ACCTTGTGAAGGTTGAGCGT+TGG 0.493031 8.1:-3509270 None:intergenic
TGTGAGGAGAAGCATGATGA+TGG 0.495135 8.1:-3508901 None:intergenic
CAAACAGCACAACGAGAATC+GGG 0.497987 8.1:-3509116 None:intergenic
GGTGGAGGGCGCCGGCTAAG+AGG 0.499890 8.1:-3508977 None:intergenic
GGTTGAGCGTTGGACCGAAC+CGG 0.501540 8.1:-3509260 None:intergenic
CTCAACCTCTTCCTCTTAGC+CGG 0.507892 8.1:+3508966 MS.gene035654:CDS
AGGGATTGAAGACGGTGGGT+TGG 0.508720 8.1:-3509020 None:intergenic
GATGATGGGTTTGAGGAAAA+GGG 0.516706 8.1:-3508886 None:intergenic
AGAGAAAGAAGAGGGATGTG+AGG 0.517778 8.1:-3508917 None:intergenic
CACAAGCTATTATTACAAAA+GGG 0.519132 8.1:-3509360 None:intergenic
ACGGAAACGGAGGCGGTGGA+GGG 0.523526 8.1:-3508991 None:intergenic
TGGGTTTGAGGAAAAGGGAG+AGG 0.528031 8.1:-3508881 None:intergenic
CTTTGGTGATCCGGAAGTTG+GGG 0.528986 8.1:-3509079 None:intergenic
CTACTTGCCGTACACCGGTT+CGG 0.530310 8.1:+3509246 MS.gene035654:CDS
GAGTAGGACGGAAACGGAGG+CGG 0.531377 8.1:-3508998 None:intergenic
GGGCGCCGGCTAAGAGGAAG+AGG 0.535078 8.1:-3508971 None:intergenic
GGAGAAAGGCGGCGAAACCG+AGG 0.539177 8.1:-3508941 None:intergenic
CGTTGGACCGAACCGGTGTA+CGG 0.546340 8.1:-3509253 None:intergenic
GGGAGGTTGTTGATTTCGCG+AGG 0.564332 8.1:-3509059 None:intergenic
AGGGAGGAAAGCGTCGGTGA+GGG 0.565102 8.1:-3509039 None:intergenic
CCATGGTGTTGGGGATGAGA+AGG 0.567157 8.1:-3508822 None:intergenic
TCGGTTGTAGAACAAGATGA+AGG 0.570752 8.1:+3509293 MS.gene035654:CDS
GGGTTGGAGTAGGACGGAAA+CGG 0.573008 8.1:-3509004 None:intergenic
CGAACCGGTGTACGGCAAGT+AGG 0.574174 8.1:-3509245 None:intergenic
TGAAGACGGTGGGTTGGAGT+AGG 0.581713 8.1:-3509014 None:intergenic
CCCAACTTCCGGATCACCAA+AGG 0.581918 8.1:+3509080 MS.gene035654:CDS
GGTGAGGGATTGAAGACGGT+GGG 0.588631 8.1:-3509024 None:intergenic
TGGTGATCCGGAAGTTGGGG+AGG 0.590502 8.1:-3509076 None:intergenic
GGTTGTTGATTTCGCGAGGG+AGG 0.591963 8.1:-3509055 None:intergenic
CTAAGAGGAAGAGGTTGAGG+AGG 0.593800 8.1:-3508962 None:intergenic
GTGTCCTACTTGCCGTACAC+CGG 0.602666 8.1:+3509241 MS.gene035654:CDS
GTTGTTGTTCAGGATCGCCA+TGG 0.605538 8.1:-3508839 None:intergenic
GTGAGGAGAAGCATGATGAT+GGG 0.607789 8.1:-3508900 None:intergenic
ACCGAGGAAGAGAAAGAAGA+GGG 0.608693 8.1:-3508925 None:intergenic
AACCGAGGAAGAGAAAGAAG+AGG 0.612058 8.1:-3508926 None:intergenic
CGGTGAGGGATTGAAGACGG+TGG 0.613281 8.1:-3509025 None:intergenic
TCAGGATCGCCATGGTGTTG+GGG 0.615546 8.1:-3508831 None:intergenic
GACGGTGGGTTGGAGTAGGA+CGG 0.619003 8.1:-3509010 None:intergenic
ATCGGAGATGTATTGATACG+TGG 0.623163 8.1:+3509201 MS.gene035654:CDS
GTGTTGGGGATGAGAAGGCA+TGG 0.640252 8.1:-3508817 None:intergenic
GAGGGAGGAAAGCGTCGGTG+AGG 0.640961 8.1:-3509040 None:intergenic
TTGGAGTAGGACGGAAACGG+AGG 0.643565 8.1:-3509001 None:intergenic
TCTACAACCGAACCTTGTGA+AGG 0.648198 8.1:-3509281 None:intergenic
CGTCGGTGAGGGATTGAAGA+CGG 0.649526 8.1:-3509028 None:intergenic
GAGGTTGAGGAGGAGAAAGG+CGG 0.653553 8.1:-3508952 None:intergenic
CCTTCTCATCCCCAACACCA+TGG 0.654904 8.1:+3508822 MS.gene035654:CDS
GGAGGTTGTTGATTTCGCGA+GGG 0.655842 8.1:-3509058 None:intergenic
TTCGCGAGGGAGGAAAGCGT+CGG 0.671242 8.1:-3509045 None:intergenic
TGTAGAAATCTCGCTGCCTG+TGG 0.675543 8.1:+3509167 MS.gene035654:CDS
TCCAACGCTCAACCTTCACA+AGG 0.693145 8.1:+3509269 MS.gene035654:CDS
TGTACGGCAAGTAGGACACG+TGG 0.730422 8.1:-3509237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TATTGATACGTGGCTTCTTA+AGG + chr8.1:3509211-3509230 MS.gene035654:CDS 35.0%
! ATGAAGGTTCTTCACGATTT+TGG + chr8.1:3509309-3509328 MS.gene035654:CDS 35.0%
!!! TTTGGTTTTGGTTGTTGTTC+AGG - chr8.1:3508852-3508871 None:intergenic 35.0%
ACAAACAGCACAACGAGAAT+CGG - chr8.1:3509120-3509139 None:intergenic 40.0%
TCGGTTGTAGAACAAGATGA+AGG + chr8.1:3509293-3509312 MS.gene035654:CDS 40.0%
! ACGGTTTTCGTAATGGTCAA+TGG + chr8.1:3509144-3509163 MS.gene035654:CDS 40.0%
! ATCGGAGATGTATTGATACG+TGG + chr8.1:3509201-3509220 MS.gene035654:CDS 40.0%
! CCTGTGGTCATGTTTTTCAT+CGG + chr8.1:3509183-3509202 MS.gene035654:CDS 40.0%
! TGTTTGGACGGTTTTCGTAA+TGG + chr8.1:3509137-3509156 MS.gene035654:CDS 40.0%
!! AGGAGATTAGGGTTTGGTTT+TGG - chr8.1:3508864-3508883 None:intergenic 40.0%
!! GATGATGGGTTTGAGGAAAA+GGG - chr8.1:3508889-3508908 None:intergenic 40.0%
!! TGATGATGGGTTTGAGGAAA+AGG - chr8.1:3508890-3508909 None:intergenic 40.0%
!! TTCTCGTTGTGCTGTTTGTT+TGG + chr8.1:3509121-3509140 MS.gene035654:CDS 40.0%
AACCGAGGAAGAGAAAGAAG+AGG - chr8.1:3508929-3508948 None:intergenic 45.0%
ACCGAGGAAGAGAAAGAAGA+GGG - chr8.1:3508928-3508947 None:intergenic 45.0%
ACGAGAATCGGGTTCAGAAA+CGG - chr8.1:3509108-3509127 None:intergenic 45.0%
AGAGAAAGAAGAGGGATGTG+AGG - chr8.1:3508920-3508939 None:intergenic 45.0%
AGGAAAAGGGAGAGGAGATT+AGG - chr8.1:3508876-3508895 None:intergenic 45.0%
CAAACAGCACAACGAGAATC+GGG - chr8.1:3509119-3509138 None:intergenic 45.0%
CCGATGAAAAACATGACCAC+AGG - chr8.1:3509186-3509205 None:intergenic 45.0%
GGAAAAGGGAGAGGAGATTA+GGG - chr8.1:3508875-3508894 None:intergenic 45.0%
TCCCTCTTCTTTCTCTTCCT+CGG + chr8.1:3508924-3508943 MS.gene035654:CDS 45.0%
TCTACAACCGAACCTTGTGA+AGG - chr8.1:3509284-3509303 None:intergenic 45.0%
! AAACGGAACCTTTGGTGATC+CGG - chr8.1:3509091-3509110 None:intergenic 45.0%
! GTGAGGAGAAGCATGATGAT+GGG - chr8.1:3508903-3508922 None:intergenic 45.0%
! TGTGAGGAGAAGCATGATGA+TGG - chr8.1:3508904-3508923 None:intergenic 45.0%
!! CGTTGTGCTGTTTGTTTGGA+CGG + chr8.1:3509125-3509144 MS.gene035654:CDS 45.0%
!! GAAGCATGATGATGGGTTTG+AGG - chr8.1:3508896-3508915 None:intergenic 45.0%
ACCTTGTGAAGGTTGAGCGT+TGG - chr8.1:3509273-3509292 None:intergenic 50.0%
AGGGAGAGGAGATTAGGGTT+TGG - chr8.1:3508870-3508889 None:intergenic 50.0%
CGCTCAACCTTCACAAGGTT+CGG + chr8.1:3509274-3509293 MS.gene035654:CDS 50.0%
CTAAGAGGAAGAGGTTGAGG+AGG - chr8.1:3508965-3508984 None:intergenic 50.0%
CTCAACCTCTTCCTCTTAGC+CGG + chr8.1:3508966-3508985 MS.gene035654:CDS 50.0%
GAAGAGGTTGAGGAGGAGAA+AGG - chr8.1:3508958-3508977 None:intergenic 50.0%
GGGTTCAGAAACGGAACCTT+TGG - chr8.1:3509099-3509118 None:intergenic 50.0%
TCAACAACCTCCCCAACTTC+CGG + chr8.1:3509069-3509088 MS.gene035654:CDS 50.0%
TCCAACGCTCAACCTTCACA+AGG + chr8.1:3509269-3509288 MS.gene035654:CDS 50.0%
TGGGTTTGAGGAAAAGGGAG+AGG - chr8.1:3508884-3508903 None:intergenic 50.0%
TGTAGAAATCTCGCTGCCTG+TGG + chr8.1:3509167-3509186 MS.gene035654:CDS 50.0%
TTCAGGATCGCCATGGTGTT+GGG - chr8.1:3508835-3508854 None:intergenic 50.0%
! ACCTTTGGTGATCCGGAAGT+TGG - chr8.1:3509084-3509103 None:intergenic 50.0%
! CCTTTGGTGATCCGGAAGTT+GGG - chr8.1:3509083-3509102 None:intergenic 50.0%
! CTTTGGTGATCCGGAAGTTG+GGG - chr8.1:3509082-3509101 None:intergenic 50.0%
! GTTGTTGTTCAGGATCGCCA+TGG - chr8.1:3508842-3508861 None:intergenic 50.0%
!! GGAGGTTGTTGATTTCGCGA+GGG - chr8.1:3509061-3509080 None:intergenic 50.0%
AGGGATTGAAGACGGTGGGT+TGG - chr8.1:3509023-3509042 None:intergenic 55.0%
CCCAACTTCCGGATCACCAA+AGG + chr8.1:3509080-3509099 MS.gene035654:CDS 55.0%
CCTTCTCATCCCCAACACCA+TGG + chr8.1:3508822-3508841 MS.gene035654:CDS 55.0%
CGGCTAAGAGGAAGAGGTTG+AGG - chr8.1:3508968-3508987 None:intergenic 55.0%
CGTCGGTGAGGGATTGAAGA+CGG - chr8.1:3509031-3509050 None:intergenic 55.0%
GAGGTTGAGGAGGAGAAAGG+CGG - chr8.1:3508955-3508974 None:intergenic 55.0%
GGGTTGGAGTAGGACGGAAA+CGG - chr8.1:3509007-3509026 None:intergenic 55.0%
GGTGAGGGATTGAAGACGGT+GGG - chr8.1:3509027-3509046 None:intergenic 55.0%
GTGTCCTACTTGCCGTACAC+CGG + chr8.1:3509241-3509260 MS.gene035654:CDS 55.0%
GTTCAGGATCGCCATGGTGT+TGG - chr8.1:3508836-3508855 None:intergenic 55.0%
TGTACGGCAAGTAGGACACG+TGG - chr8.1:3509240-3509259 None:intergenic 55.0%
TTGGAGTAGGACGGAAACGG+AGG - chr8.1:3509004-3509023 None:intergenic 55.0%
! CCATGGTGTTGGGGATGAGA+AGG - chr8.1:3508825-3508844 None:intergenic 55.0%
! CTACTTGCCGTACACCGGTT+CGG + chr8.1:3509246-3509265 MS.gene035654:CDS 55.0%
! TCAGGATCGCCATGGTGTTG+GGG - chr8.1:3508834-3508853 None:intergenic 55.0%
!! GGGAGGTTGTTGATTTCGCG+AGG - chr8.1:3509062-3509081 None:intergenic 55.0%
!! GGTTGTTGATTTCGCGAGGG+AGG - chr8.1:3509058-3509077 None:intergenic 55.0%
!! TGAAGACGGTGGGTTGGAGT+AGG - chr8.1:3509017-3509036 None:intergenic 55.0%
CGAACCGGTGTACGGCAAGT+AGG - chr8.1:3509248-3509267 None:intergenic 60.0%
CGGTGAGGGATTGAAGACGG+TGG - chr8.1:3509028-3509047 None:intergenic 60.0%
CGTTGGACCGAACCGGTGTA+CGG - chr8.1:3509256-3509275 None:intergenic 60.0%
GAGTAGGACGGAAACGGAGG+CGG - chr8.1:3509001-3509020 None:intergenic 60.0%
TGGTGATCCGGAAGTTGGGG+AGG - chr8.1:3509079-3509098 None:intergenic 60.0%
! TTCGCGAGGGAGGAAAGCGT+CGG - chr8.1:3509048-3509067 None:intergenic 60.0%
!! AGGGAGGAAAGCGTCGGTGA+GGG - chr8.1:3509042-3509061 None:intergenic 60.0%
!! GACGGTGGGTTGGAGTAGGA+CGG - chr8.1:3509013-3509032 None:intergenic 60.0%
!! GGTTGAGCGTTGGACCGAAC+CGG - chr8.1:3509263-3509282 None:intergenic 60.0%
ACGGAAACGGAGGCGGTGGA+GGG - chr8.1:3508994-3509013 None:intergenic 65.0%
GGAGAAAGGCGGCGAAACCG+AGG - chr8.1:3508944-3508963 None:intergenic 65.0%
TAGGACGGAAACGGAGGCGG+TGG - chr8.1:3508998-3509017 None:intergenic 65.0%
!! GAGGGAGGAAAGCGTCGGTG+AGG - chr8.1:3509043-3509062 None:intergenic 65.0%
GACGGAAACGGAGGCGGTGG+AGG - chr8.1:3508995-3509014 None:intergenic 70.0%
!! GGGCGCCGGCTAAGAGGAAG+AGG - chr8.1:3508974-3508993 None:intergenic 70.0%
!! GGTGGAGGGCGCCGGCTAAG+AGG - chr8.1:3508980-3508999 None:intergenic 75.0%
!! ACGGAGGCGGTGGAGGGCGC+CGG - chr8.1:3508988-3509007 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 3508819 3509370 3508819 ID=MS.gene035654
chr8.1 mRNA 3508819 3509370 3508819 ID=MS.gene035654.t1;Parent=MS.gene035654
chr8.1 exon 3508819 3509370 3508819 ID=MS.gene035654.t1.exon1;Parent=MS.gene035654.t1
chr8.1 CDS 3508819 3509370 3508819 ID=cds.MS.gene035654.t1;Parent=MS.gene035654.t1
Gene Sequence

>MS.gene035654

ATGCCTTCTCATCCCCAACACCATGGCGATCCTGAACAACAACCAAAACCAAACCCTAATCTCCTCTCCCTTTTCCTCAAACCCATCATCATGCTTCTCCTCACATCCCTCTTCTTTCTCTTCCTCGGTTTCGCCGCCTTTCTCCTCCTCAACCTCTTCCTCTTAGCCGGCGCCCTCCACCGCCTCCGTTTCCGTCCTACTCCAACCCACCGTCTTCAATCCCTCACCGACGCTTTCCTCCCTCGCGAAATCAACAACCTCCCCAACTTCCGGATCACCAAAGGTTCCGTTTCTGAACCCGATTCTCGTTGTGCTGTTTGTTTGGACGGTTTTCGTAATGGTCAATGGTGTAGAAATCTCGCTGCCTGTGGTCATGTTTTTCATCGGAGATGTATTGATACGTGGCTTCTTAAGGTTGCCACGTGTCCTACTTGCCGTACACCGGTTCGGTCCAACGCTCAACCTTCACAAGGTTCGGTTGTAGAACAAGATGAAGGTTCTTCACGATTTTGGAATTGCTCTAATAACAACAATCGTTTCACCCTTTTGTAA
Protein sequence

>MS.gene035654.t1

MPSHPQHHGDPEQQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPTHRLQSLTDAFLPREINNLPNFRITKGSVSEPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSNAQPSQGSVVEQDEGSSRFWNCSNNNNRFTLL