Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035723.t1 | XP_003610117.1 | 97.5 | 241 | 5 | 1 | 1 | 240 | 61 | 301 | 9.00E-129 | 469.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035723.t1 | Q8VZP1 | 76.1 | 238 | 56 | 1 | 1 | 237 | 1 | 238 | 2.5e-103 | 376.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035723.t1 | G7JVF5 | 97.5 | 241 | 5 | 1 | 1 | 240 | 61 | 301 | 6.5e-129 | 469.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85927 | MS.gene035723 | PPI |
MS.gene55353 | MS.gene035723 | PPI |
MS.gene53154 | MS.gene035723 | PPI |
MS.gene78610 | MS.gene035723 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035723.t1 | MTR_4g128090 | 97.510 | 241 | 5 | 1 | 1 | 240 | 61 | 301 | 1.41e-172 | 477 |
MS.gene035723.t1 | MTR_4g091060 | 37.719 | 228 | 135 | 4 | 10 | 237 | 5 | 225 | 5.02e-43 | 147 |
MS.gene035723.t1 | MTR_4g091060 | 37.719 | 228 | 135 | 4 | 10 | 237 | 5 | 225 | 7.10e-42 | 146 |
MS.gene035723.t1 | MTR_2g091220 | 37.118 | 229 | 129 | 7 | 13 | 237 | 11 | 228 | 6.47e-35 | 125 |
MS.gene035723.t1 | MTR_2g091220 | 37.118 | 229 | 129 | 7 | 13 | 237 | 11 | 228 | 6.59e-35 | 125 |
MS.gene035723.t1 | MTR_2g091220 | 37.118 | 229 | 129 | 7 | 13 | 237 | 11 | 228 | 7.93e-34 | 125 |
MS.gene035723.t1 | MTR_4g091060 | 40.123 | 162 | 92 | 3 | 76 | 237 | 10 | 166 | 9.44e-30 | 113 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035723.t1 | AT5G57440 | 76.050 | 238 | 56 | 1 | 1 | 237 | 1 | 238 | 4.18e-136 | 382 |
MS.gene035723.t1 | AT4G25840 | 76.190 | 231 | 55 | 0 | 10 | 240 | 68 | 298 | 3.07e-133 | 377 |
MS.gene035723.t1 | AT4G21470 | 35.345 | 232 | 143 | 4 | 6 | 237 | 4 | 228 | 8.02e-40 | 141 |
Find 47 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGATGCATCATGTTGTTCT+TGG | 0.193950 | 8.4:+6332139 | MS.gene035723:CDS |
CTTCTCTTTCAACAAGAAAT+TGG | 0.261291 | 8.4:-6329790 | None:intergenic |
GTTCCAATTGCCGTGGCAAC+TGG | 0.292460 | 8.4:+6331925 | MS.gene035723:CDS |
TACCCAGTTGCCACGGCAAT+TGG | 0.323593 | 8.4:-6331928 | None:intergenic |
GGTTTGCCTTGTTTAACTTC+AGG | 0.330793 | 8.4:-6332169 | None:intergenic |
GTGTTGTAGGTCTGTTGTTA+TGG | 0.365140 | 8.4:+6334056 | MS.gene035723:intron |
GTTTGCCTTGTTTAACTTCA+GGG | 0.369613 | 8.4:-6332168 | None:intergenic |
TTACCTCCGTTTGAAGATGA+TGG | 0.421278 | 8.4:+6334168 | MS.gene035723:CDS |
CCTGGCATGAGCTCGCTTGT+TGG | 0.428334 | 8.4:-6329833 | None:intergenic |
TGCTGCAGCCAGGAGATTTG+AGG | 0.448286 | 8.4:+6332210 | MS.gene035723:CDS |
GCCTCTCAAGGCAAAGATGA+TGG | 0.451010 | 8.4:+6329697 | MS.gene035723:CDS |
CAATTTCCATCATCTTCAAA+CGG | 0.457681 | 8.4:-6334174 | None:intergenic |
TGAAAAGATTTGTCCAGCCT+TGG | 0.458300 | 8.4:-6334087 | None:intergenic |
GACATCGACGGAGGAGGGAT+TGG | 0.464703 | 8.4:-6329459 | None:intergenic |
GATTTGTCCAGCCTTGGATC+AGG | 0.474667 | 8.4:-6334081 | None:intergenic |
CCCATCATCTTTGCCTTGAG+AGG | 0.490842 | 8.4:-6329698 | None:intergenic |
ATGTATTTCTTGCTGCAGCC+AGG | 0.492722 | 8.4:+6332200 | MS.gene035723:CDS |
CTCAAGCATCTACATGCAAA+AGG | 0.496114 | 8.4:+6331901 | MS.gene035723:CDS |
GTTCGTGCAGCTAAGAATGC+TGG | 0.496579 | 8.4:+6332473 | MS.gene035723:CDS |
CCAACAATGAGTTCAAAACT+TGG | 0.503574 | 8.4:-6334122 | None:intergenic |
CCAACAAGCGAGCTCATGCC+AGG | 0.507539 | 8.4:+6329833 | MS.gene035723:CDS |
GGAGGTAAACTCCACTCACT+AGG | 0.512625 | 8.4:-6334153 | None:intergenic |
TTGTTATGGTTCCTGATCCA+AGG | 0.516102 | 8.4:+6334070 | MS.gene035723:CDS |
TATATATACCTCAAATCTCC+TGG | 0.525175 | 8.4:-6332218 | None:intergenic |
GCTGCAGCAAGAAATACATC+TGG | 0.528849 | 8.4:-6332196 | None:intergenic |
AACTGAAAACGCAAAGACAC+GGG | 0.538812 | 8.4:+6332104 | MS.gene035723:CDS |
TTCCAATTGCCGTGGCAACT+GGG | 0.540048 | 8.4:+6331926 | MS.gene035723:CDS |
TATGGTTCCTGATCCAAGGC+TGG | 0.543162 | 8.4:+6334074 | MS.gene035723:CDS |
GAAAGCGATTGAAGCTGCTA+AGG | 0.553025 | 8.4:+6329724 | MS.gene035723:CDS |
GACATGGACGGTCTCTTGCT+AGG | 0.555282 | 8.4:+6329509 | MS.gene035723:CDS |
GAACTGAAAACGCAAAGACA+CGG | 0.557091 | 8.4:+6332103 | MS.gene035723:CDS |
CCTCTCAAGGCAAAGATGAT+GGG | 0.558033 | 8.4:+6329698 | MS.gene035723:CDS |
TTTCTGACATCGACGGAGGA+GGG | 0.565694 | 8.4:-6329464 | None:intergenic |
TGGATTTCAACCCTAGTGAG+TGG | 0.575322 | 8.4:+6334142 | MS.gene035723:CDS |
AGAATATTACTCGGATCCAC+TGG | 0.577509 | 8.4:-6332425 | None:intergenic |
TCTTTCAACAAGAAATTGGT+CGG | 0.578381 | 8.4:-6329786 | None:intergenic |
TGAAATTTACCCAGTTGCCA+CGG | 0.584481 | 8.4:-6331935 | None:intergenic |
GAGGTAAACTCCACTCACTA+GGG | 0.599003 | 8.4:-6334152 | None:intergenic |
GCAAGAAATACATCTGGTGA+TGG | 0.606339 | 8.4:-6332190 | None:intergenic |
TGATCAACAGGGTGGACCAG+TGG | 0.613544 | 8.4:+6332409 | MS.gene035723:intron |
CTTAGCTGCACGAACTCCAG+AGG | 0.618799 | 8.4:-6332465 | None:intergenic |
TTAGCTGCACGAACTCCAGA+GGG | 0.640809 | 8.4:-6332464 | None:intergenic |
TTTCCATCATCTTCAAACGG+AGG | 0.641636 | 8.4:-6334171 | None:intergenic |
AAAAGGAGTTCCAATTGCCG+TGG | 0.660340 | 8.4:+6331918 | MS.gene035723:CDS |
GATGACCCTGAAGTTAAACA+AGG | 0.674433 | 8.4:+6332163 | MS.gene035723:CDS |
TTGAAAGAGAAGATATGCTG+CGG | 0.688166 | 8.4:+6329801 | MS.gene035723:CDS |
ACTGAAAACGCAAAGACACG+GGG | 0.708609 | 8.4:+6332105 | MS.gene035723:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAACCAATAAAA+AGG | - | chr8.4:6330605-6330624 | None:intergenic | 10.0% |
!! | AAAAAAAAAACCAATAAAAA+GGG | - | chr8.4:6330604-6330623 | None:intergenic | 10.0% |
!!! | CTTTTACTTTTTTTTTTTTT+GGG | + | chr8.4:6331981-6332000 | MS.gene035723:intron | 10.0% |
!!! | TCTTTTACTTTTTTTTTTTT+TGG | + | chr8.4:6331980-6331999 | MS.gene035723:intron | 10.0% |
!!! | TTCTTAAACTTTAATATTTT+TGG | + | chr8.4:6330933-6330952 | MS.gene035723:intron | 10.0% |
!!! | TTTATTGGTTTTTTTTTTTT+TGG | + | chr8.4:6330606-6330625 | MS.gene035723:intron | 10.0% |
!!! | TTTTACTTTTTTTTTTTTTG+GGG | + | chr8.4:6331982-6332001 | MS.gene035723:intron | 10.0% |
!!! | TTTTATTGATTTGTATAAAT+TGG | + | chr8.4:6330104-6330123 | MS.gene035723:intron | 10.0% |
!! | AAAACATTTATATGTTTACT+GGG | + | chr8.4:6332997-6333016 | MS.gene035723:intron | 15.0% |
!! | AAAATCCAAAAAGAATATAA+AGG | - | chr8.4:6333559-6333578 | None:intergenic | 15.0% |
!! | AATAGTACATGATTAAAAAA+TGG | + | chr8.4:6330010-6330029 | MS.gene035723:intron | 15.0% |
!! | TGTATATTATTGATATTTAC+CGG | + | chr8.4:6331211-6331230 | MS.gene035723:intron | 15.0% |
!! | TTGTGAAAAGAATAAAAAAA+GGG | - | chr8.4:6330532-6330551 | None:intergenic | 15.0% |
!! | TTTATATGCTATGAATTATT+TGG | + | chr8.4:6333617-6333636 | MS.gene035723:intron | 15.0% |
!!! | ATAGTTTTCTTACTTTTTAA+TGG | + | chr8.4:6331266-6331285 | MS.gene035723:intron | 15.0% |
!!! | GTTTTTTAACTAAACATATA+TGG | + | chr8.4:6332537-6332556 | MS.gene035723:intron | 15.0% |
!!! | TTTACTTTTTTTTTTTTTGG+GGG | + | chr8.4:6331983-6332002 | MS.gene035723:intron | 15.0% |
!! | AAAATAAGTTAAAATAGCGT+TGG | - | chr8.4:6333171-6333190 | None:intergenic | 20.0% |
!! | AAATGTAATGAAATTGATCA+AGG | - | chr8.4:6333952-6333971 | None:intergenic | 20.0% |
!! | AATATAAGCAACATTTATAG+TGG | - | chr8.4:6331624-6331643 | None:intergenic | 20.0% |
!! | ATAGGTAACAAACATTATTA+TGG | - | chr8.4:6333354-6333373 | None:intergenic | 20.0% |
!! | ATATATAAGTGTTTATTGAG+AGG | - | chr8.4:6333598-6333617 | None:intergenic | 20.0% |
!! | ATCTCAATATGTAACTAATT+GGG | + | chr8.4:6331035-6331054 | MS.gene035723:intron | 20.0% |
!! | CAAAACATTTATATGTTTAC+TGG | + | chr8.4:6332996-6333015 | MS.gene035723:intron | 20.0% |
!! | GATAAGTATTTATGCTATAA+GGG | + | chr8.4:6333300-6333319 | MS.gene035723:intron | 20.0% |
!! | GTTGTGAAAAGAATAAAAAA+AGG | - | chr8.4:6330533-6330552 | None:intergenic | 20.0% |
!! | TAAATGTGAATGTTGATATA+GGG | + | chr8.4:6333054-6333073 | MS.gene035723:intron | 20.0% |
!! | TAGAATAAGTTTCATTCTTT+CGG | - | chr8.4:6330578-6330597 | None:intergenic | 20.0% |
!! | TAGGTAACAAACATTATTAT+GGG | - | chr8.4:6333353-6333372 | None:intergenic | 20.0% |
!! | TCAAAAACAAGAATATTACT+CGG | - | chr8.4:6332437-6332456 | None:intergenic | 20.0% |
!! | TGATAAGTATTTATGCTATA+AGG | + | chr8.4:6333299-6333318 | MS.gene035723:intron | 20.0% |
!!! | AAATTTTAACAAATCAGAAG+TGG | - | chr8.4:6330381-6330400 | None:intergenic | 20.0% |
!!! | CTTAACCTTTATATTCTTTT+TGG | + | chr8.4:6333551-6333570 | MS.gene035723:intron | 20.0% |
!!! | GATACAATAAAACTTTTGAA+TGG | + | chr8.4:6329675-6329694 | MS.gene035723:CDS | 20.0% |
!!! | TATTCTTTTCACAACTTATA+AGG | + | chr8.4:6330538-6330557 | MS.gene035723:intron | 20.0% |
! | AAATCACCAATATATCTTTC+TGG | - | chr8.4:6332911-6332930 | None:intergenic | 25.0% |
! | AAATGAGAATGAACAACTAT+TGG | - | chr8.4:6330352-6330371 | None:intergenic | 25.0% |
! | AACAACCTTTGTGTAAAAAT+AGG | + | chr8.4:6330427-6330446 | MS.gene035723:intron | 25.0% |
! | AAGTTGAAACATGCTAAATA+AGG | - | chr8.4:6331150-6331169 | None:intergenic | 25.0% |
! | AATGAACCAGAAAGATATAT+TGG | + | chr8.4:6332902-6332921 | MS.gene035723:intron | 25.0% |
! | ACAACCTTTGTGTAAAAATA+GGG | + | chr8.4:6330428-6330447 | MS.gene035723:intron | 25.0% |
! | ACATCAGCATATAAAAAAAG+TGG | - | chr8.4:6331839-6331858 | None:intergenic | 25.0% |
! | ATTCGTAATAAACAGCAAAA+AGG | - | chr8.4:6329592-6329611 | None:intergenic | 25.0% |
! | CATCTCAATATGTAACTAAT+TGG | + | chr8.4:6331034-6331053 | MS.gene035723:intron | 25.0% |
! | CTAAATGTGAATGTTGATAT+AGG | + | chr8.4:6333053-6333072 | MS.gene035723:intron | 25.0% |
! | GTAAATATTGAACTTTACTC+AGG | + | chr8.4:6331646-6331665 | MS.gene035723:intron | 25.0% |
! | TAAAACTTCTTCCTATGTAT+AGG | + | chr8.4:6331580-6331599 | MS.gene035723:intron | 25.0% |
! | TTATCCAATAGCTTAATTGA+GGG | - | chr8.4:6330837-6330856 | None:intergenic | 25.0% |
! | TTCATAACATAAATATACCG+TGG | + | chr8.4:6332795-6332814 | MS.gene035723:intron | 25.0% |
! | TTCGTAATAAACAGCAAAAA+GGG | - | chr8.4:6329591-6329610 | None:intergenic | 25.0% |
! | TTGTTAAATAGCAGTTATAG+TGG | - | chr8.4:6333834-6333853 | None:intergenic | 25.0% |
! | TTTATCCAATAGCTTAATTG+AGG | - | chr8.4:6330838-6330857 | None:intergenic | 25.0% |
!! | AAATGTTTTGCAGATGAAAT+CGG | - | chr8.4:6332986-6333005 | None:intergenic | 25.0% |
!! | AGAAAGATATATTGGTGATT+TGG | + | chr8.4:6332910-6332929 | MS.gene035723:intron | 25.0% |
!! | ATATGGTTTTCTGATTCTAT+TGG | - | chr8.4:6332689-6332708 | None:intergenic | 25.0% |
!! | ATATGTCTTATTGACTATCA+AGG | + | chr8.4:6330060-6330079 | MS.gene035723:intron | 25.0% |
!! | ATTAATGACTTTTGTGAACT+TGG | + | chr8.4:6332246-6332265 | MS.gene035723:intron | 25.0% |
!! | ATTTCTGCTATTTATTGTGA+AGG | - | chr8.4:6330771-6330790 | None:intergenic | 25.0% |
!!! | ATAATATACAGAGAAGTACT+AGG | - | chr8.4:6331201-6331220 | None:intergenic | 25.0% |
!!! | ATGTGTGTTTTGTTATATGT+AGG | + | chr8.4:6330269-6330288 | MS.gene035723:intron | 25.0% |
!!! | ATGTTCTGAAATGTTTATGT+TGG | + | chr8.4:6331301-6331320 | MS.gene035723:intron | 25.0% |
!!! | ATTTTCCTGGTTTGAATTTA+AGG | + | chr8.4:6332300-6332319 | MS.gene035723:intron | 25.0% |
!!! | CAACTTCTTTTTGAAGATAT+GGG | + | chr8.4:6331401-6331420 | MS.gene035723:intron | 25.0% |
!!! | CCAAACTAGTTTGTTTATTA+GGG | + | chr8.4:6331711-6331730 | MS.gene035723:intron | 25.0% |
!!! | TCCAAACTAGTTTGTTTATT+AGG | + | chr8.4:6331710-6331729 | MS.gene035723:intron | 25.0% |
!!! | TTTTGGCGTAATTTTTAAGA+AGG | + | chr8.4:6330623-6330642 | MS.gene035723:intron | 25.0% |
AAAATATGAATCTCAGAAGC+TGG | + | chr8.4:6333396-6333415 | MS.gene035723:intron | 30.0% | |
AAACAGATGATGTACAATCA+TGG | - | chr8.4:6332616-6332635 | None:intergenic | 30.0% | |
AAATATGAATCTCAGAAGCT+GGG | + | chr8.4:6333397-6333416 | MS.gene035723:intron | 30.0% | |
AACATTATTATGGGTCTGTT+TGG | - | chr8.4:6333344-6333363 | None:intergenic | 30.0% | |
ACCTATTACAAATGAAAAGC+AGG | - | chr8.4:6331869-6331888 | None:intergenic | 30.0% | |
ACTAGTGTGTGAATGTTATA+TGG | - | chr8.4:6332706-6332725 | None:intergenic | 30.0% | |
AGATATGTCTTCATATATGC+CGG | - | chr8.4:6331233-6331252 | None:intergenic | 30.0% | |
CAATTTCCATCATCTTCAAA+CGG | - | chr8.4:6334177-6334196 | None:intergenic | 30.0% | |
CCCTAATAAACAAACTAGTT+TGG | - | chr8.4:6331714-6331733 | None:intergenic | 30.0% | |
CTTCTCTTTCAACAAGAAAT+TGG | - | chr8.4:6329793-6329812 | None:intergenic | 30.0% | |
CTTTGTGTAAAAATAGGGTA+AGG | + | chr8.4:6330433-6330452 | MS.gene035723:intron | 30.0% | |
GCTGGTAAATATTATCAACT+GGG | - | chr8.4:6333494-6333513 | None:intergenic | 30.0% | |
GTGTATTAATTCCATTTACC+TGG | - | chr8.4:6329854-6329873 | None:intergenic | 30.0% | |
TAAATGTGCTTTCTATACCA+CGG | - | chr8.4:6332815-6332834 | None:intergenic | 30.0% | |
TAATGAAATTGATCAAGGTG+AGG | - | chr8.4:6333947-6333966 | None:intergenic | 30.0% | |
TATATATACCTCAAATCTCC+TGG | - | chr8.4:6332221-6332240 | None:intergenic | 30.0% | |
TATATGTTCATAACATGCTG+TGG | + | chr8.4:6332733-6332752 | MS.gene035723:intron | 30.0% | |
TATCCAATAGCTTAATTGAG+GGG | - | chr8.4:6330836-6330855 | None:intergenic | 30.0% | |
TCATATAAGTGCTTATGTCT+AGG | - | chr8.4:6333282-6333301 | None:intergenic | 30.0% | |
TCTTTCAACAAGAAATTGGT+CGG | - | chr8.4:6329789-6329808 | None:intergenic | 30.0% | |
TTGAATGTAACTACATGTGT+TGG | + | chr8.4:6329906-6329925 | MS.gene035723:intron | 30.0% | |
TTGTCAAATATCTGTTACAG+TGG | - | chr8.4:6333707-6333726 | None:intergenic | 30.0% | |
! | AGAAAGCACATTTAGTAGAA+TGG | + | chr8.4:6332821-6332840 | MS.gene035723:intron | 30.0% |
! | ATGCAAAACAATTTGAGATG+CGG | - | chr8.4:6331470-6331489 | None:intergenic | 30.0% |
! | CACTATAACTGCTATTTAAC+CGG | + | chr8.4:6333801-6333820 | MS.gene035723:intron | 30.0% |
! | GAAAGCACATTTAGTAGAAT+GGG | + | chr8.4:6332822-6332841 | MS.gene035723:intron | 30.0% |
! | GAAGTCTGATTCAATACTTT+TGG | + | chr8.4:6330967-6330986 | MS.gene035723:intron | 30.0% |
! | GGTTTGCTTGGTATATTTAA+TGG | + | chr8.4:6331322-6331341 | MS.gene035723:intron | 30.0% |
! | GTTTGTTACCTATGTATATG+AGG | + | chr8.4:6333361-6333380 | MS.gene035723:intron | 30.0% |
! | TATTCTAGCACCCTTTTTAT+TGG | + | chr8.4:6330591-6330610 | MS.gene035723:intron | 30.0% |
! | TCTAGTCGTATATTTTGTGT+AGG | + | chr8.4:6330742-6330761 | MS.gene035723:intron | 30.0% |
! | TGCATTTCACTGATTGTATT+TGG | - | chr8.4:6333516-6333535 | None:intergenic | 30.0% |
! | TTTTAACAAATCAGAAGTGG+AGG | - | chr8.4:6330378-6330397 | None:intergenic | 30.0% |
! | TTTTTACGCCTCATATACAT+AGG | - | chr8.4:6333372-6333391 | None:intergenic | 30.0% |
!! | AAAGAATTTGTTACGAGTAC+AGG | - | chr8.4:6332954-6332973 | None:intergenic | 30.0% |
!! | AATGTTTATGTTGGTTTGCT+TGG | + | chr8.4:6331310-6331329 | MS.gene035723:intron | 30.0% |
!! | GCAACTTCTTTTTGAAGATA+TGG | + | chr8.4:6331400-6331419 | MS.gene035723:intron | 30.0% |
!! | TTGGTTTGCTTGGTATATAT+TGG | + | chr8.4:6331376-6331395 | MS.gene035723:intron | 30.0% |
!!! | CTTACCCTATTTTTACACAA+AGG | - | chr8.4:6330435-6330454 | None:intergenic | 30.0% |
ACATTTAGTATACTCGAGAG+AGG | - | chr8.4:6333041-6333060 | None:intergenic | 35.0% | |
ACCAAAGAGAACCTATACAT+AGG | - | chr8.4:6331594-6331613 | None:intergenic | 35.0% | |
ACCCTGTATTACTACATGTT+CGG | + | chr8.4:6332878-6332897 | MS.gene035723:intron | 35.0% | |
ACCGAACATGTAGTAATACA+GGG | - | chr8.4:6332882-6332901 | None:intergenic | 35.0% | |
ACGCTGCATTATGATATTTG+TGG | + | chr8.4:6331081-6331100 | MS.gene035723:intron | 35.0% | |
ACTTATTTGAGCTTATCCAC+TGG | + | chr8.4:6333090-6333109 | MS.gene035723:intron | 35.0% | |
AGATGATGTACAATCATGGA+TGG | - | chr8.4:6332612-6332631 | None:intergenic | 35.0% | |
AGGAATGAGTGGTAAGAAAT+TGG | - | chr8.4:6333927-6333946 | None:intergenic | 35.0% | |
ATAACATAAAGACCGTGGAA+TGG | - | chr8.4:6333432-6333451 | None:intergenic | 35.0% | |
ATATTGAGCAGCTAGTATGT+TGG | - | chr8.4:6332772-6332791 | None:intergenic | 35.0% | |
ATCCAATAGCTTAATTGAGG+GGG | - | chr8.4:6330835-6330854 | None:intergenic | 35.0% | |
ATGTTGATATAGGGTCTGTT+TGG | + | chr8.4:6333063-6333082 | MS.gene035723:intron | 35.0% | |
CATTTAGTATACTCGAGAGA+GGG | - | chr8.4:6333040-6333059 | None:intergenic | 35.0% | |
CCAACAATGAGTTCAAAACT+TGG | - | chr8.4:6334125-6334144 | None:intergenic | 35.0% | |
CGGTTAAATAGCAGTTATAG+TGG | - | chr8.4:6333803-6333822 | None:intergenic | 35.0% | |
CGTATACAAATAGCGTATCA+CGG | + | chr8.4:6333730-6333749 | MS.gene035723:intron | 35.0% | |
GACAAAAAAGTAACACGAGA+TGG | - | chr8.4:6331962-6331981 | None:intergenic | 35.0% | |
GATCACAAACTCAACAAAGT+TGG | - | chr8.4:6332355-6332374 | None:intergenic | 35.0% | |
GATGATGTACAATCATGGAT+GGG | - | chr8.4:6332611-6332630 | None:intergenic | 35.0% | |
GGCTGGTAAATATTATCAAC+TGG | - | chr8.4:6333495-6333514 | None:intergenic | 35.0% | |
GGTATTGTAGACTCAAACTT+AGG | + | chr8.4:6331667-6331686 | MS.gene035723:intron | 35.0% | |
TAAGAAGGAACATGATCGAT+TGG | + | chr8.4:6330638-6330657 | MS.gene035723:intron | 35.0% | |
TACCGAACATGTAGTAATAC+AGG | - | chr8.4:6332883-6332902 | None:intergenic | 35.0% | |
TCAAAAACGACATGTGTGAT+TGG | - | chr8.4:6329491-6329510 | None:intergenic | 35.0% | |
TCCTATGTATAGGTTCTCTT+TGG | + | chr8.4:6331590-6331609 | MS.gene035723:intron | 35.0% | |
TGCAGATAAATTGAAAGCTC+TGG | + | chr8.4:6329986-6330005 | MS.gene035723:intron | 35.0% | |
TTAACAACACAGTTTGAGCT+AGG | + | chr8.4:6333847-6333866 | MS.gene035723:intron | 35.0% | |
TTCAAAAATTCCACGCAGAA+AGG | - | chr8.4:6331436-6331455 | None:intergenic | 35.0% | |
TTGAAAGAGAAGATATGCTG+CGG | + | chr8.4:6329801-6329820 | MS.gene035723:CDS | 35.0% | |
! | AAGGTTTTTGTTGAAGAGAC+TGG | + | chr8.4:6329743-6329762 | MS.gene035723:CDS | 35.0% |
! | ACGATACATTGATGATCAAC+AGG | + | chr8.4:6332397-6332416 | MS.gene035723:intron | 35.0% |
! | AGAACACAAATGCATTTTCC+TGG | + | chr8.4:6332287-6332306 | MS.gene035723:intron | 35.0% |
! | ATGATCTGCTGTTTGTAATG+GGG | + | chr8.4:6331512-6331531 | MS.gene035723:intron | 35.0% |
! | CACATACTAAAGTACTTGCA+TGG | - | chr8.4:6331782-6331801 | None:intergenic | 35.0% |
! | CGATACATTGATGATCAACA+GGG | + | chr8.4:6332398-6332417 | MS.gene035723:intron | 35.0% |
! | CTGTAATTCTTCTTTTGCTC+TGG | + | chr8.4:6330993-6331012 | MS.gene035723:intron | 35.0% |
! | GATGATCTGCTGTTTGTAAT+GGG | + | chr8.4:6331511-6331530 | MS.gene035723:intron | 35.0% |
! | GTCAGGTTTTCAAAATGTGT+CGG | - | chr8.4:6329941-6329960 | None:intergenic | 35.0% |
! | TGATGATCTGCTGTTTGTAA+TGG | + | chr8.4:6331510-6331529 | MS.gene035723:intron | 35.0% |
! | TTGTTTGTTACACGTGTTGT+AGG | + | chr8.4:6334043-6334062 | MS.gene035723:intron | 35.0% |
! | TTTACACAAAGGTTGTTTCC+AGG | - | chr8.4:6330424-6330443 | None:intergenic | 35.0% |
! | TTTCACTGATTGTATTTGGC+TGG | - | chr8.4:6333512-6333531 | None:intergenic | 35.0% |
!! | AAGTTTTAATCTTGCGCACT+TGG | - | chr8.4:6331568-6331587 | None:intergenic | 35.0% |
!! | AGCTCTAAGGTTTCAATTTG+AGG | - | chr8.4:6331109-6331128 | None:intergenic | 35.0% |
!! | ATATACAGAGAAGTACTAGG+TGG | - | chr8.4:6331198-6331217 | None:intergenic | 35.0% |
!! | CTTATTTTCATAAGCTCTCC+AGG | + | chr8.4:6333183-6333202 | MS.gene035723:intron | 35.0% |
!! | GCCTGCTTTTCATTTGTAAT+AGG | + | chr8.4:6331865-6331884 | MS.gene035723:intron | 35.0% |
!! | GTTTGCCTTGTTTAACTTCA+GGG | - | chr8.4:6332171-6332190 | None:intergenic | 35.0% |
!!! | ATGTTCATGTTTTCAAGTCC+TGG | + | chr8.4:6330403-6330422 | MS.gene035723:intron | 35.0% |
!!! | CCAAGTTTTGAACTCATTGT+TGG | + | chr8.4:6334122-6334141 | MS.gene035723:CDS | 35.0% |
AACACTTAGCGCATAGAAGA+TGG | - | chr8.4:6330175-6330194 | None:intergenic | 40.0% | |
AACTGAAAACGCAAAGACAC+GGG | + | chr8.4:6332104-6332123 | MS.gene035723:CDS | 40.0% | |
AAGCACATGCAAGACTGTTT+GGG | + | chr8.4:6333116-6333135 | MS.gene035723:intron | 40.0% | |
ACAGCTACATAACCGTTTGA+TGG | - | chr8.4:6330691-6330710 | None:intergenic | 40.0% | |
ACTACTGATAACCGCAACTA+AGG | + | chr8.4:6332661-6332680 | MS.gene035723:intron | 40.0% | |
AGAATATTACTCGGATCCAC+TGG | - | chr8.4:6332428-6332447 | None:intergenic | 40.0% | |
AGTTGCGGTTATCAGTAGTT+AGG | - | chr8.4:6332660-6332679 | None:intergenic | 40.0% | |
CAAATTCCACTACGCTATAG+CGG | + | chr8.4:6333770-6333789 | MS.gene035723:intron | 40.0% | |
CATCATAACCAAGTGTTCTG+AGG | - | chr8.4:6333891-6333910 | None:intergenic | 40.0% | |
CATCCATGTTCTCCATCAAA+CGG | + | chr8.4:6330676-6330695 | MS.gene035723:intron | 40.0% | |
CGTACAATACACCAAATGGT+GGG | + | chr8.4:6330459-6330478 | MS.gene035723:intron | 40.0% | |
CTCAAGCATCTACATGCAAA+AGG | + | chr8.4:6331901-6331920 | MS.gene035723:CDS | 40.0% | |
CTGATGCATCATGTTGTTCT+TGG | + | chr8.4:6332139-6332158 | MS.gene035723:CDS | 40.0% | |
GAACTGAAAACGCAAAGACA+CGG | + | chr8.4:6332103-6332122 | MS.gene035723:CDS | 40.0% | |
GATGACCCTGAAGTTAAACA+AGG | + | chr8.4:6332163-6332182 | MS.gene035723:CDS | 40.0% | |
GCAAGAAATACATCTGGTGA+TGG | - | chr8.4:6332193-6332212 | None:intergenic | 40.0% | |
GCTGTTCTCAAAAACTAACC+TGG | - | chr8.4:6333204-6333223 | None:intergenic | 40.0% | |
GCTTGTCACATTGAAAAGAC+AGG | + | chr8.4:6331744-6331763 | MS.gene035723:intron | 40.0% | |
GTGTTGTAGGTCTGTTGTTA+TGG | + | chr8.4:6334056-6334075 | MS.gene035723:intron | 40.0% | |
GTGTTGTCAATCACAGATAG+CGG | + | chr8.4:6333645-6333664 | MS.gene035723:intron | 40.0% | |
GTTGCGTACAATACACCAAA+TGG | + | chr8.4:6330455-6330474 | MS.gene035723:intron | 40.0% | |
TAACCGTTTGATGGAGAACA+TGG | - | chr8.4:6330682-6330701 | None:intergenic | 40.0% | |
TAAGCACATGCAAGACTGTT+TGG | + | chr8.4:6333115-6333134 | MS.gene035723:intron | 40.0% | |
TCCAATAGCTTAATTGAGGG+GGG | - | chr8.4:6330834-6330853 | None:intergenic | 40.0% | |
TGAAAAGATTTGTCCAGCCT+TGG | - | chr8.4:6334090-6334109 | None:intergenic | 40.0% | |
TGAAATTTACCCAGTTGCCA+CGG | - | chr8.4:6331938-6331957 | None:intergenic | 40.0% | |
TGACTTCAAAGCAAGCTCTA+AGG | - | chr8.4:6331122-6331141 | None:intergenic | 40.0% | |
TTACCTCCGTTTGAAGATGA+TGG | + | chr8.4:6334168-6334187 | MS.gene035723:CDS | 40.0% | |
TTGTTATGGTTCCTGATCCA+AGG | + | chr8.4:6334070-6334089 | MS.gene035723:CDS | 40.0% | |
TTTCCATCATCTTCAAACGG+AGG | - | chr8.4:6334174-6334193 | None:intergenic | 40.0% | |
! | AACTTTTGAATGGCCTCTCA+AGG | + | chr8.4:6329685-6329704 | MS.gene035723:CDS | 40.0% |
! | AAGGCTGGACAAATCTTTTC+AGG | + | chr8.4:6334089-6334108 | MS.gene035723:CDS | 40.0% |
! | CCAAAGTGTTCAACTCAACA+AGG | - | chr8.4:6330880-6330899 | None:intergenic | 40.0% |
! | CCTGGTTTGAATTTAAGGCT+GGG | + | chr8.4:6332305-6332324 | MS.gene035723:intron | 40.0% |
! | CTTTTGCTCTGGTGAAATCT+TGG | + | chr8.4:6331004-6331023 | MS.gene035723:intron | 40.0% |
! | TACATTGATGATCAACAGGG+TGG | + | chr8.4:6332401-6332420 | MS.gene035723:intron | 40.0% |
! | TCCTGGTTTGAATTTAAGGC+TGG | + | chr8.4:6332304-6332323 | MS.gene035723:intron | 40.0% |
! | TTCTATTGGTGCCTTAGTTG+CGG | - | chr8.4:6332675-6332694 | None:intergenic | 40.0% |
! | TTTTCAGTATGCCTTCTGCA+GGG | - | chr8.4:6330242-6330261 | None:intergenic | 40.0% |
!! | AGAATAAAAAAAGGGCACCC+CGG | - | chr8.4:6330524-6330543 | None:intergenic | 40.0% |
!! | CCTTGTTGAGTTGAACACTT+TGG | + | chr8.4:6330877-6330896 | MS.gene035723:intron | 40.0% |
!! | GGTTTGCCTTGTTTAACTTC+AGG | - | chr8.4:6332172-6332191 | None:intergenic | 40.0% |
!!! | CACACATGTCGTTTTTGACA+TGG | + | chr8.4:6329493-6329512 | MS.gene035723:CDS | 40.0% |
!!! | CATGTCGTTTTTGACATGGA+CGG | + | chr8.4:6329497-6329516 | MS.gene035723:CDS | 40.0% |
!!! | GATTGGTTTTCTGACATCGA+CGG | - | chr8.4:6329474-6329493 | None:intergenic | 40.0% |
AAAAGGAGTTCCAATTGCCG+TGG | + | chr8.4:6331918-6331937 | MS.gene035723:CDS | 45.0% | |
ACTGAAAACGCAAAGACACG+GGG | + | chr8.4:6332105-6332124 | MS.gene035723:CDS | 45.0% | |
ACTTGCGATCGAAGTTTGTC+AGG | - | chr8.4:6329958-6329977 | None:intergenic | 45.0% | |
AGCGTATCACGGAACAATAG+CGG | + | chr8.4:6333741-6333760 | MS.gene035723:intron | 45.0% | |
ATGTATTTCTTGCTGCAGCC+AGG | + | chr8.4:6332200-6332219 | MS.gene035723:CDS | 45.0% | |
CAAACTTCGATCGCAAGTGT+CGG | + | chr8.4:6329960-6329979 | MS.gene035723:intron | 45.0% | |
CAGTTATAGTGGCGCTATAC+CGG | - | chr8.4:6333792-6333811 | None:intergenic | 45.0% | |
CCCAGCCTTAAATTCAAACC+AGG | - | chr8.4:6332308-6332327 | None:intergenic | 45.0% | |
CCTCTCAAGGCAAAGATGAT+GGG | + | chr8.4:6329698-6329717 | MS.gene035723:CDS | 45.0% | |
CTTGCATGTGCTTATACCAG+TGG | - | chr8.4:6333109-6333128 | None:intergenic | 45.0% | |
GAAAGCGATTGAAGCTGCTA+AGG | + | chr8.4:6329724-6329743 | MS.gene035723:CDS | 45.0% | |
GAGGTAAACTCCACTCACTA+GGG | - | chr8.4:6334155-6334174 | None:intergenic | 45.0% | |
GCGTACAATACACCAAATGG+TGG | + | chr8.4:6330458-6330477 | MS.gene035723:intron | 45.0% | |
GCTGCAGCAAGAAATACATC+TGG | - | chr8.4:6332199-6332218 | None:intergenic | 45.0% | |
GTGTAGAATTCCTTTCTGCG+TGG | + | chr8.4:6331423-6331442 | MS.gene035723:intron | 45.0% | |
TCCCCCCTCAATTAAGCTAT+TGG | + | chr8.4:6330830-6330849 | MS.gene035723:intron | 45.0% | |
TGATCAAGGTGAGGAATGAG+TGG | - | chr8.4:6333938-6333957 | None:intergenic | 45.0% | |
TGGATTTCAACCCTAGTGAG+TGG | + | chr8.4:6334142-6334161 | MS.gene035723:CDS | 45.0% | |
! | AATGTCGCTTGTGAGAACTG+TGG | - | chr8.4:6332081-6332100 | None:intergenic | 45.0% |
! | ATGTCGCTTGTGAGAACTGT+GGG | - | chr8.4:6332080-6332099 | None:intergenic | 45.0% |
! | CTTTTCAGTATGCCTTCTGC+AGG | - | chr8.4:6330243-6330262 | None:intergenic | 45.0% |
!! | GTTTTTGAAGATGCACCCTC+TGG | + | chr8.4:6332449-6332468 | MS.gene035723:CDS | 45.0% |
!!! | TTTTTTTTTTTTTTTTTACA+TGG | + | chr8.4:6329552-6329571 | MS.gene035723:intron | 5.0% |
ACTAAAGCTTCCGCATACGC+AGG | - | chr8.4:6330498-6330517 | None:intergenic | 50.0% | |
CCCATCATCTTTGCCTTGAG+AGG | - | chr8.4:6329701-6329720 | None:intergenic | 50.0% | |
CTAAAGCTTCCGCATACGCA+GGG | - | chr8.4:6330497-6330516 | None:intergenic | 50.0% | |
GATTTGTCCAGCCTTGGATC+AGG | - | chr8.4:6334084-6334103 | None:intergenic | 50.0% | |
GCCTCTCAAGGCAAAGATGA+TGG | + | chr8.4:6329697-6329716 | MS.gene035723:CDS | 50.0% | |
GCTATACCGCTATAGCGTAG+TGG | - | chr8.4:6333779-6333798 | None:intergenic | 50.0% | |
GCTATAGCACTACTGCGTAG+TGG | - | chr8.4:6333683-6333702 | None:intergenic | 50.0% | |
GGAGGTAAACTCCACTCACT+AGG | - | chr8.4:6334156-6334175 | None:intergenic | 50.0% | |
GGGCTGTTGAATCCATTCCA+CGG | + | chr8.4:6333417-6333436 | MS.gene035723:intron | 50.0% | |
GTGTGTTGCCTCAGAACACT+TGG | + | chr8.4:6333880-6333899 | MS.gene035723:intron | 50.0% | |
GTTCGTGCAGCTAAGAATGC+TGG | + | chr8.4:6332473-6332492 | MS.gene035723:CDS | 50.0% | |
TATGGTTCCTGATCCAAGGC+TGG | + | chr8.4:6334074-6334093 | MS.gene035723:CDS | 50.0% | |
TGAGGGGGGAAATCAATGAC+TGG | - | chr8.4:6330820-6330839 | None:intergenic | 50.0% | |
TTAGCTGCACGAACTCCAGA+GGG | - | chr8.4:6332467-6332486 | None:intergenic | 50.0% | |
TTCCAATTGCCGTGGCAACT+GGG | + | chr8.4:6331926-6331945 | MS.gene035723:CDS | 50.0% | |
TTTCTGACATCGACGGAGGA+GGG | - | chr8.4:6329467-6329486 | None:intergenic | 50.0% | |
! | ATGCGGAAGCTTTAGTGCAC+CGG | + | chr8.4:6330502-6330521 | MS.gene035723:intron | 50.0% |
! | TGGTTTTCTGACATCGACGG+AGG | - | chr8.4:6329471-6329490 | None:intergenic | 50.0% |
! | TGTCGCTTGTGAGAACTGTG+GGG | - | chr8.4:6332079-6332098 | None:intergenic | 50.0% |
! | TTTTCTGACATCGACGGAGG+AGG | - | chr8.4:6329468-6329487 | None:intergenic | 50.0% |
!! | TGTCTTTGAGACCCTGCAGA+AGG | + | chr8.4:6330228-6330247 | MS.gene035723:intron | 50.0% |
CTTAGCTGCACGAACTCCAG+AGG | - | chr8.4:6332468-6332487 | None:intergenic | 55.0% | |
GACATGGACGGTCTCTTGCT+AGG | + | chr8.4:6329509-6329528 | MS.gene035723:CDS | 55.0% | |
GCGAGCTCATGCCAGGTAAA+TGG | + | chr8.4:6329840-6329859 | MS.gene035723:intron | 55.0% | |
GTTCCAATTGCCGTGGCAAC+TGG | + | chr8.4:6331925-6331944 | MS.gene035723:CDS | 55.0% | |
TACCCAGTTGCCACGGCAAT+TGG | - | chr8.4:6331931-6331950 | None:intergenic | 55.0% | |
TGATCAACAGGGTGGACCAG+TGG | + | chr8.4:6332409-6332428 | MS.gene035723:intron | 55.0% | |
TGCTGCAGCCAGGAGATTTG+AGG | + | chr8.4:6332210-6332229 | MS.gene035723:CDS | 55.0% | |
! | TGCGGAAGCTTTAGTGCACC+GGG | + | chr8.4:6330503-6330522 | MS.gene035723:intron | 55.0% |
CCAACAAGCGAGCTCATGCC+AGG | + | chr8.4:6329833-6329852 | MS.gene035723:CDS | 60.0% | |
CCTGGCATGAGCTCGCTTGT+TGG | - | chr8.4:6329836-6329855 | None:intergenic | 60.0% | |
GACATCGACGGAGGAGGGAT+TGG | - | chr8.4:6329462-6329481 | None:intergenic | 60.0% | |
! | CCAAATGGTGGGACCCCTTC+CGG | + | chr8.4:6330470-6330489 | MS.gene035723:intron | 60.0% |
! | GCGGAAGCTTTAGTGCACCG+GGG | + | chr8.4:6330504-6330523 | MS.gene035723:intron | 60.0% |
CCGGAAGGGGTCCCACCATT+TGG | - | chr8.4:6330473-6330492 | None:intergenic | 65.0% | |
CCTTCCGGACCCTGCGTATG+CGG | + | chr8.4:6330485-6330504 | MS.gene035723:intron | 65.0% | |
CGCATACGCAGGGTCCGGAA+GGG | - | chr8.4:6330487-6330506 | None:intergenic | 65.0% | |
GCATACGCAGGGTCCGGAAG+GGG | - | chr8.4:6330486-6330505 | None:intergenic | 65.0% | |
GCTTCCGCATACGCAGGGTC+CGG | - | chr8.4:6330492-6330511 | None:intergenic | 65.0% | |
CCGCATACGCAGGGTCCGGA+AGG | - | chr8.4:6330488-6330507 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 6329455 | 6334197 | 6329455 | ID=MS.gene035723 |
chr8.4 | mRNA | 6329455 | 6334197 | 6329455 | ID=MS.gene035723.t1;Parent=MS.gene035723 |
chr8.4 | exon | 6329455 | 6329530 | 6329455 | ID=MS.gene035723.t1.exon1;Parent=MS.gene035723.t1 |
chr8.4 | CDS | 6329455 | 6329530 | 6329455 | ID=cds.MS.gene035723.t1;Parent=MS.gene035723.t1 |
chr8.4 | exon | 6329630 | 6329854 | 6329630 | ID=MS.gene035723.t1.exon2;Parent=MS.gene035723.t1 |
chr8.4 | CDS | 6329630 | 6329854 | 6329630 | ID=cds.MS.gene035723.t1;Parent=MS.gene035723.t1 |
chr8.4 | exon | 6331887 | 6331947 | 6331887 | ID=MS.gene035723.t1.exon3;Parent=MS.gene035723.t1 |
chr8.4 | CDS | 6331887 | 6331947 | 6331887 | ID=cds.MS.gene035723.t1;Parent=MS.gene035723.t1 |
chr8.4 | exon | 6332084 | 6332231 | 6332084 | ID=MS.gene035723.t1.exon4;Parent=MS.gene035723.t1 |
chr8.4 | CDS | 6332084 | 6332231 | 6332084 | ID=cds.MS.gene035723.t1;Parent=MS.gene035723.t1 |
chr8.4 | exon | 6332419 | 6332498 | 6332419 | ID=MS.gene035723.t1.exon5;Parent=MS.gene035723.t1 |
chr8.4 | CDS | 6332419 | 6332498 | 6332419 | ID=cds.MS.gene035723.t1;Parent=MS.gene035723.t1 |
chr8.4 | exon | 6334065 | 6334197 | 6334065 | ID=MS.gene035723.t1.exon6;Parent=MS.gene035723.t1 |
chr8.4 | CDS | 6334065 | 6334197 | 6334065 | ID=cds.MS.gene035723.t1;Parent=MS.gene035723.t1 |
Gene Sequence |
Protein sequence |