Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036601.t1 | XP_013458178.1 | 95.4 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 9.90E-128 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036601.t1 | Q9ZT66 | 39.1 | 225 | 122 | 5 | 4 | 218 | 27 | 246 | 6.5e-35 | 149.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036601.t1 | A0A072UQU5 | 95.4 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 7.1e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036601 | MS.gene61602 | PPI |
| MS.gene061318 | MS.gene036601 | PPI |
| MS.gene070774 | MS.gene036601 | PPI |
| MS.gene66599 | MS.gene036601 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036601.t1 | MTR_4g117380 | 95.378 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 8.08e-160 | 442 |
| MS.gene036601.t1 | MTR_4g117400 | 66.527 | 239 | 79 | 1 | 1 | 238 | 55 | 293 | 7.54e-121 | 345 |
| MS.gene036601.t1 | MTR_4g117450 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 5.55e-117 | 334 |
| MS.gene036601.t1 | MTR_4g117450 | 61.600 | 250 | 84 | 2 | 1 | 238 | 1 | 250 | 9.07e-114 | 326 |
| MS.gene036601.t1 | MTR_4g117390 | 63.598 | 239 | 76 | 2 | 1 | 238 | 1 | 229 | 5.60e-109 | 313 |
| MS.gene036601.t1 | MTR_4g117450 | 67.403 | 181 | 58 | 1 | 59 | 238 | 2 | 182 | 2.58e-90 | 264 |
| MS.gene036601.t1 | MTR_2g021340 | 54.357 | 241 | 107 | 3 | 1 | 238 | 1 | 241 | 4.83e-86 | 255 |
| MS.gene036601.t1 | MTR_2g021340 | 55.157 | 223 | 98 | 2 | 18 | 238 | 22 | 244 | 1.24e-80 | 242 |
| MS.gene036601.t1 | MTR_3g005060 | 27.536 | 207 | 141 | 4 | 37 | 237 | 115 | 318 | 4.12e-15 | 73.6 |
| MS.gene036601.t1 | MTR_3g005060 | 27.536 | 207 | 141 | 4 | 37 | 237 | 129 | 332 | 4.93e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036601.t1 | AT3G23600 | 68.619 | 239 | 74 | 1 | 1 | 238 | 1 | 239 | 1.06e-125 | 356 |
| MS.gene036601.t1 | AT3G23600 | 67.364 | 239 | 74 | 2 | 1 | 238 | 1 | 236 | 1.59e-121 | 345 |
| MS.gene036601.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
| MS.gene036601.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
| MS.gene036601.t1 | AT3G23570 | 64.435 | 239 | 84 | 1 | 1 | 238 | 1 | 239 | 6.07e-117 | 333 |
| MS.gene036601.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 70 | 273 | 4.60e-18 | 81.3 |
| MS.gene036601.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 111 | 314 | 5.01e-18 | 81.6 |
| MS.gene036601.t1 | AT1G35420 | 27.751 | 209 | 138 | 6 | 37 | 237 | 106 | 309 | 6.48e-18 | 81.3 |
Find 59 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGTCTCTGATGTTTA+TGG | 0.109227 | 8.4:-13141053 | MS.gene036601:intron |
| CTGATAGGCCCTTGCCTATT+TGG | 0.125625 | 8.4:-13139475 | MS.gene036601:CDS |
| AGAACAGCGGATTTGGAATT+AGG | 0.193141 | 8.4:+13141074 | None:intergenic |
| CAAATAGGCAAGGGCCTATC+AGG | 0.225941 | 8.4:+13139476 | None:intergenic |
| AATTAGCTATACCTTAAATT+TGG | 0.243468 | 8.4:+13140119 | None:intergenic |
| GATATGAAGCGCCAAATTTA+AGG | 0.244805 | 8.4:-13140130 | MS.gene036601:intron |
| TTCACAGCTTCTGCATCTTC+CGG | 0.247248 | 8.4:+13137115 | None:intergenic |
| GACAAGAAGAACAGCGGATT+TGG | 0.260945 | 8.4:+13141067 | None:intergenic |
| TCACAGCTTCTGCATCTTCC+GGG | 0.308736 | 8.4:+13137116 | None:intergenic |
| TCAGCTCCAAGTATAGAAAA+TGG | 0.312128 | 8.4:+13137545 | None:intergenic |
| GTTTCATCTGTCGGGGCTGC+TGG | 0.315874 | 8.4:-13139074 | MS.gene036601:CDS |
| TGTTTCTGTGGACGACATAA+AGG | 0.316271 | 8.4:-13138778 | MS.gene036601:CDS |
| TGAGGCACATCAAGACTTAC+TGG | 0.332421 | 8.4:-13137083 | MS.gene036601:CDS |
| GATTGTAGGGTTCACCATTA+AGG | 0.341648 | 8.4:+13139507 | None:intergenic |
| GTTGTTCCCGACTTCCTTAA+TGG | 0.344085 | 8.4:-13139521 | MS.gene036601:CDS |
| TTCCTAAAGTTTCCCATGGC+TGG | 0.359638 | 8.4:-13137153 | MS.gene036601:CDS |
| TCAAACTGTTTCACAAGCTC+TGG | 0.361384 | 8.4:+13137503 | None:intergenic |
| ATCAGGGTTCTCGGGATTGT+AGG | 0.369856 | 8.4:+13139493 | None:intergenic |
| GTCCAGCCATGGGAAACTTT+AGG | 0.383013 | 8.4:+13137151 | None:intergenic |
| GTAAAGGTGTTTCATCTGTC+GGG | 0.417259 | 8.4:-13139082 | MS.gene036601:CDS |
| CAAGGGCCTATCAGGGTTCT+CGG | 0.443980 | 8.4:+13139484 | None:intergenic |
| GCAGACAAAGTTGCAGCTGC+TGG | 0.444923 | 8.4:-13139554 | MS.gene036601:CDS |
| CACCGCAGCTTGGATAAGTC+TGG | 0.448910 | 8.4:+13138818 | None:intergenic |
| ACAATCCCGAGAACCCTGAT+AGG | 0.450787 | 8.4:-13139490 | MS.gene036601:CDS |
| CCTATTTGGATAAAAGATCA+TGG | 0.453160 | 8.4:-13139461 | MS.gene036601:CDS |
| CTGAATCCGAATGCAGGATC+TGG | 0.456933 | 8.4:-13141143 | MS.gene036601:CDS |
| CATTCGGATTCAGTGTTGGT+GGG | 0.459033 | 8.4:+13141153 | None:intergenic |
| GTTTCTGTGGACGACATAAA+GGG | 0.461542 | 8.4:-13138777 | MS.gene036601:intron |
| ACGTGACCAGATCCTGCATT+CGG | 0.496584 | 8.4:+13141137 | None:intergenic |
| TCAGGGTTCTCGGGATTGTA+GGG | 0.497761 | 8.4:+13139494 | None:intergenic |
| AAGGGCCTATCAGGGTTCTC+GGG | 0.511101 | 8.4:+13139485 | None:intergenic |
| GCATTCGGATTCAGTGTTGG+TGG | 0.513869 | 8.4:+13141152 | None:intergenic |
| GGTTCACCATTAAGGAAGTC+GGG | 0.517776 | 8.4:+13139515 | None:intergenic |
| AGTAAAGGTGTTTCATCTGT+CGG | 0.519087 | 8.4:-13139083 | MS.gene036601:CDS |
| AACTGTTTCACAAGCTCTGG+AGG | 0.526203 | 8.4:+13137506 | None:intergenic |
| GATGCAACAGCACCGCAGCT+TGG | 0.538985 | 8.4:+13138808 | None:intergenic |
| TGTATCTCACAGTCCAGCCA+TGG | 0.544793 | 8.4:+13137140 | None:intergenic |
| GCATCCATCATTTGTTTCTG+TGG | 0.547944 | 8.4:-13138790 | MS.gene036601:CDS |
| TCGTCCACAGAAACAAATGA+TGG | 0.552834 | 8.4:+13138786 | None:intergenic |
| GCTCTCAATGCCTACATCGT+CGG | 0.557731 | 8.4:-13141101 | MS.gene036601:CDS |
| CTGGACTGTGAGATACAGCC+CGG | 0.557853 | 8.4:-13137134 | MS.gene036601:CDS |
| TCTGGTCACGTTGAAAAGCT+TGG | 0.558124 | 8.4:-13141125 | MS.gene036601:CDS |
| GGGTTCACCATTAAGGAAGT+CGG | 0.562199 | 8.4:+13139514 | None:intergenic |
| AGCTGTGAAAACTGCAGATG+AGG | 0.562425 | 8.4:-13137101 | MS.gene036601:CDS |
| ATTAGGAGAACCGACGATGT+AGG | 0.563292 | 8.4:+13141091 | None:intergenic |
| TGACCGCAGATTTAGCACTA+AGG | 0.564771 | 8.4:+13137474 | None:intergenic |
| TGCAGCTGCTGGTTATTATG+TGG | 0.565842 | 8.4:-13139543 | MS.gene036601:CDS |
| ATATTTCCTAAAGTTTCCCA+TGG | 0.570812 | 8.4:-13137157 | MS.gene036601:CDS |
| CCTGCATTCGGATTCAGTGT+TGG | 0.576766 | 8.4:+13141149 | None:intergenic |
| CCAACACTGAATCCGAATGC+AGG | 0.579836 | 8.4:-13141149 | MS.gene036601:CDS |
| CACATCAAGACTTACTGGAC+TGG | 0.583292 | 8.4:-13137078 | MS.gene036601:CDS |
| GTATCTCACAGTCCAGCCAT+GGG | 0.606707 | 8.4:+13137141 | None:intergenic |
| TTATTATATTAACAGGACAA+AGG | 0.624184 | 8.4:-13139143 | MS.gene036601:intron |
| AAATAGGCAAGGGCCTATCA+GGG | 0.626194 | 8.4:+13139477 | None:intergenic |
| ATCCAGACTTATCCAAGCTG+CGG | 0.640963 | 8.4:-13138820 | MS.gene036601:CDS |
| TAAAGGTGTTTCATCTGTCG+GGG | 0.641381 | 8.4:-13139081 | MS.gene036601:CDS |
| TTGGATAAAAGATCATGGAA+CGG | 0.646563 | 8.4:-13139456 | MS.gene036601:intron |
| AATCCTTAGTGCTAAATCTG+CGG | 0.663773 | 8.4:-13137477 | MS.gene036601:intron |
| ATCAGAGACAAGAAGAACAG+CGG | 0.690019 | 8.4:+13141061 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTGTAATTTATAAAGT+CGG | - | chr8.4:13138381-13138400 | MS.gene036601:intron | 10.0% |
| !! | TAATTAAGCAAAAAAAAAAA+AGG | + | chr8.4:13137255-13137274 | None:intergenic | 10.0% |
| !! | AAAAAAAAGGTGAATAAAAA+TGG | + | chr8.4:13137242-13137261 | None:intergenic | 15.0% |
| !! | AGTTAATAAAGTAAAATGAA+TGG | + | chr8.4:13137340-13137359 | None:intergenic | 15.0% |
| !! | ATACCTATTATTATATTAAC+AGG | - | chr8.4:13139086-13139105 | MS.gene036601:CDS | 15.0% |
| !! | TAAGAAAAATGTATAAATGA+AGG | + | chr8.4:13139990-13140009 | None:intergenic | 15.0% |
| !! | TCTTAAAGACTTAAAAATTA+TGG | - | chr8.4:13137406-13137425 | MS.gene036601:intron | 15.0% |
| !!! | ATTCTAATCTTATCTTTTTT+TGG | - | chr8.4:13140829-13140848 | MS.gene036601:intron | 15.0% |
| !!! | ATTTTCTTAAAAAAACTAGA+AGG | - | chr8.4:13138353-13138372 | MS.gene036601:intron | 15.0% |
| !!! | TACAATTAAATGCATATTTT+TGG | + | chr8.4:13140192-13140211 | None:intergenic | 15.0% |
| !!! | TGACTAGATTTTTAATTTAT+AGG | - | chr8.4:13138450-13138469 | MS.gene036601:intron | 15.0% |
| !!! | TTTTCTTAAAAAAACTAGAA+GGG | - | chr8.4:13138354-13138373 | MS.gene036601:intron | 15.0% |
| !!! | TTTTTAATTTGTACTTTTTG+TGG | - | chr8.4:13137985-13138004 | MS.gene036601:intron | 15.0% |
| !! | AAAAAATTAGTCAATCCAAA+GGG | + | chr8.4:13137754-13137773 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | + | chr8.4:13139903-13139922 | None:intergenic | 20.0% |
| !! | AAATTGATTGTAATTACAAC+TGG | + | chr8.4:13139598-13139617 | None:intergenic | 20.0% |
| !! | AAGATTAGAATATCAAAAGA+TGG | + | chr8.4:13140820-13140839 | None:intergenic | 20.0% |
| !! | AATAAATATAACCAATCATG+AGG | + | chr8.4:13140286-13140305 | None:intergenic | 20.0% |
| !! | AATTAGCTATACCTTAAATT+TGG | + | chr8.4:13138120-13138139 | None:intergenic | 20.0% |
| !! | ATCATTTAGTAATGAGAAAT+TGG | + | chr8.4:13138328-13138347 | None:intergenic | 20.0% |
| !! | CTTAAAAATTATGGTTAACT+AGG | - | chr8.4:13137415-13137434 | MS.gene036601:intron | 20.0% |
| !! | GATAATGATAATATGATACA+GGG | - | chr8.4:13137727-13137746 | MS.gene036601:intron | 20.0% |
| !! | GTTAATTATTGTTCTTATTC+AGG | - | chr8.4:13140658-13140677 | MS.gene036601:intron | 20.0% |
| !! | TAAAAAATTAGTCAATCCAA+AGG | + | chr8.4:13137755-13137774 | None:intergenic | 20.0% |
| !! | TATATACTAGTGCAAAAATT+AGG | - | chr8.4:13140333-13140352 | MS.gene036601:intron | 20.0% |
| !! | TGTCCTGTTAATATAATAAT+AGG | + | chr8.4:13139092-13139111 | None:intergenic | 20.0% |
| !! | TTATTATATTAACAGGACAA+AGG | - | chr8.4:13139093-13139112 | MS.gene036601:CDS | 20.0% |
| !!! | ACTTACTGAAACTTTAATTT+TGG | - | chr8.4:13138910-13138929 | MS.gene036601:intron | 20.0% |
| !!! | AGTTCTTATTTAACAATTCT+TGG | - | chr8.4:13138805-13138824 | MS.gene036601:CDS | 20.0% |
| !!! | ATTTTTTGTACAACCAAATT+TGG | + | chr8.4:13137673-13137692 | None:intergenic | 20.0% |
| !!! | GTATCAAATTTAGTCATTTT+TGG | - | chr8.4:13138156-13138175 | MS.gene036601:intron | 20.0% |
| !!! | TGATAATGATAATATGATAC+AGG | - | chr8.4:13137726-13137745 | MS.gene036601:intron | 20.0% |
| !!! | TTTTCTCTTTTACTTATCAA+AGG | + | chr8.4:13138848-13138867 | None:intergenic | 20.0% |
| !!! | TTTTTTTACTTTTTCCTGTT+AGG | - | chr8.4:13138232-13138251 | MS.gene036601:intron | 20.0% |
| ! | AAGAATATAAATGCAGTATG+AGG | + | chr8.4:13137956-13137975 | None:intergenic | 25.0% |
| ! | AAGTAACAAAAATCAGCATT+TGG | - | chr8.4:13138031-13138050 | MS.gene036601:intron | 25.0% |
| ! | AATTCATATGTTCTCACTAA+CGG | + | chr8.4:13137864-13137883 | None:intergenic | 25.0% |
| ! | ACAGTTTATCTAACTTATGT+CGG | - | chr8.4:13140498-13140517 | MS.gene036601:intron | 25.0% |
| ! | AGAATATAAATGCAGTATGA+GGG | + | chr8.4:13137955-13137974 | None:intergenic | 25.0% |
| ! | AGGTGATTAATTACTTTAAG+TGG | + | chr8.4:13137606-13137625 | None:intergenic | 25.0% |
| ! | AGTAACAAAAATCAGCATTT+GGG | - | chr8.4:13138032-13138051 | MS.gene036601:intron | 25.0% |
| ! | ATATGTGTGAAATGAGTAAA+TGG | - | chr8.4:13140010-13140029 | MS.gene036601:intron | 25.0% |
| ! | ATGAAACATGTAGATTGTAT+TGG | + | chr8.4:13138574-13138593 | None:intergenic | 25.0% |
| ! | ATGAGAAATTATAAGCGAAA+AGG | + | chr8.4:13138520-13138539 | None:intergenic | 25.0% |
| ! | ATTATCATTATCAACTCTAG+TGG | + | chr8.4:13137719-13137738 | None:intergenic | 25.0% |
| ! | ATTGAAGCCATAAAAAGTAA+AGG | - | chr8.4:13139138-13139157 | MS.gene036601:intron | 25.0% |
| ! | ATTTGAACACGTTAAAATTG+TGG | + | chr8.4:13137383-13137402 | None:intergenic | 25.0% |
| ! | CAAAGTGGAATATATTGAAT+TGG | + | chr8.4:13139904-13139923 | None:intergenic | 25.0% |
| ! | CTTATAATTTCTCATGTTGT+TGG | - | chr8.4:13138525-13138544 | MS.gene036601:intron | 25.0% |
| ! | GATTAATTACTTTAAGTGGA+TGG | + | chr8.4:13137602-13137621 | None:intergenic | 25.0% |
| ! | GTGTTTAACAAGATTCAAAT+AGG | + | chr8.4:13137626-13137645 | None:intergenic | 25.0% |
| ! | GTTGTATTGAAAAGTGAAAT+GGG | + | chr8.4:13139855-13139874 | None:intergenic | 25.0% |
| ! | TAATGCCAATAGAATATGTA+AGG | + | chr8.4:13139768-13139787 | None:intergenic | 25.0% |
| ! | TAGTACCTTACATATTCTAT+TGG | - | chr8.4:13139760-13139779 | MS.gene036601:intron | 25.0% |
| ! | TAGTGTTTAAAAAGGTGAAA+AGG | + | chr8.4:13141014-13141033 | None:intergenic | 25.0% |
| ! | TGAGTTACTAGTGTTTAAAA+AGG | + | chr8.4:13141022-13141041 | None:intergenic | 25.0% |
| ! | TGTTGTATTGAAAAGTGAAA+TGG | + | chr8.4:13139856-13139875 | None:intergenic | 25.0% |
| ! | TTCAGTAAGTATACAAAAAC+TGG | + | chr8.4:13138900-13138919 | None:intergenic | 25.0% |
| ! | TTGTATAAGATGCAGTTTAA+TGG | - | chr8.4:13140373-13140392 | MS.gene036601:intron | 25.0% |
| !! | AAGGTACTAGTACAAATAAT+AGG | + | chr8.4:13139749-13139768 | None:intergenic | 25.0% |
| !! | ACTTTTTATGGCTTCAATTA+TGG | + | chr8.4:13139136-13139155 | None:intergenic | 25.0% |
| !! | ATGAGAAAATATGATCGTTT+TGG | + | chr8.4:13139706-13139725 | None:intergenic | 25.0% |
| !! | CAAATATTTTCGTACAGAAA+AGG | + | chr8.4:13139270-13139289 | None:intergenic | 25.0% |
| !! | CGTAGAATTATTTGGTTTAT+TGG | - | chr8.4:13138485-13138504 | MS.gene036601:intron | 25.0% |
| !! | CTTTTTATGGCTTCAATTAT+GGG | + | chr8.4:13139135-13139154 | None:intergenic | 25.0% |
| !! | GGAAATATTTTCACAAAACT+TGG | + | chr8.4:13141067-13141086 | None:intergenic | 25.0% |
| !! | TAATTTGCGTATTGTTTGTA+TGG | - | chr8.4:13139499-13139518 | MS.gene036601:CDS | 25.0% |
| !! | TGTAGATTGTATTGGTAATT+TGG | + | chr8.4:13138566-13138585 | None:intergenic | 25.0% |
| !! | TTAATGTTTGAAATGCAACT+AGG | - | chr8.4:13139321-13139340 | MS.gene036601:intron | 25.0% |
| !! | TTAATTTTCTCTTTCGTTTG+TGG | - | chr8.4:13140787-13140806 | MS.gene036601:intron | 25.0% |
| !!! | CTTGTATGTTTTCAAGTAAT+AGG | - | chr8.4:13139632-13139651 | MS.gene036601:intron | 25.0% |
| !!! | GGACAATATTTTTTTGCAAA+TGG | + | chr8.4:13139820-13139839 | None:intergenic | 25.0% |
| !!! | TGAAACACCTTTACTTTTTA+TGG | + | chr8.4:13139148-13139167 | None:intergenic | 25.0% |
| !!! | TTTACTTTTTGTATCAGCTA+AGG | - | chr8.4:13139374-13139393 | MS.gene036601:intron | 25.0% |
| AAAAATAAGCCAATCCAAAC+AGG | - | chr8.4:13137929-13137948 | MS.gene036601:intron | 30.0% | |
| AAAATATTTGAGCTCGTCAT+AGG | - | chr8.4:13139280-13139299 | MS.gene036601:intron | 30.0% | |
| ATAAGAAATAAGTAGAGGTG+TGG | + | chr8.4:13139237-13139256 | None:intergenic | 30.0% | |
| ATATTTCCTAAAGTTTCCCA+TGG | - | chr8.4:13141079-13141098 | MS.gene036601:CDS | 30.0% | |
| ATCATGTGAACACATTACAA+TGG | + | chr8.4:13138625-13138644 | None:intergenic | 30.0% | |
| ATTTATCCCTTGCAATAACA+AGG | + | chr8.4:13138198-13138217 | None:intergenic | 30.0% | |
| CCTATTTGGATAAAAGATCA+TGG | - | chr8.4:13138775-13138794 | MS.gene036601:intron | 30.0% | |
| CTACTATAATAAGTGCAAAG+TGG | + | chr8.4:13139919-13139938 | None:intergenic | 30.0% | |
| CTCGGTATTAATTGATTACT+TGG | - | chr8.4:13140524-13140543 | MS.gene036601:intron | 30.0% | |
| CTGTTAGAATATGAACATCT+CGG | + | chr8.4:13140639-13140658 | None:intergenic | 30.0% | |
| GACGATAAATATGGTCATTA+AGG | + | chr8.4:13139670-13139689 | None:intergenic | 30.0% | |
| GATGCATAAGAAATAAGTAG+AGG | + | chr8.4:13139214-13139233 | None:intergenic | 30.0% | |
| GCATTTGTCGTAGAATTATT+TGG | - | chr8.4:13138477-13138496 | MS.gene036601:intron | 30.0% | |
| GTACAAATAATAGGCAACTA+TGG | + | chr8.4:13139740-13139759 | None:intergenic | 30.0% | |
| TAAGTGCTCTTGTTAAGTAT+TGG | + | chr8.4:13139950-13139969 | None:intergenic | 30.0% | |
| TAATGACCATATTTATCGTC+AGG | - | chr8.4:13139670-13139689 | MS.gene036601:intron | 30.0% | |
| TACTATTCATAAGCTTGTCA+AGG | - | chr8.4:13137802-13137821 | MS.gene036601:intron | 30.0% | |
| TAGAATTCAAGAAACCTAAC+AGG | + | chr8.4:13138249-13138268 | None:intergenic | 30.0% | |
| TTAATTGTAACATACAGCAG+AGG | - | chr8.4:13140203-13140222 | MS.gene036601:intron | 30.0% | |
| TTGGATAAAAGATCATGGAA+CGG | - | chr8.4:13138780-13138799 | MS.gene036601:CDS | 30.0% | |
| ! | AAATTGGATTAGAGAGAACA+TGG | + | chr8.4:13138312-13138331 | None:intergenic | 30.0% |
| ! | ATCTTTTATCCAAATAGGCA+AGG | + | chr8.4:13138773-13138792 | None:intergenic | 30.0% |
| ! | CATTTAACTTATGCTTCTAG+AGG | - | chr8.4:13140402-13140421 | MS.gene036601:intron | 30.0% |
| ! | CCATGATCTTTTATCCAAAT+AGG | + | chr8.4:13138778-13138797 | None:intergenic | 30.0% |
| ! | GACATTCCATTTTCTATACT+TGG | - | chr8.4:13140685-13140704 | MS.gene036601:intron | 30.0% |
| ! | TAAGAAATAAGTAGAGGTGT+GGG | + | chr8.4:13139236-13139255 | None:intergenic | 30.0% |
| ! | TCTTTTATCCAAATAGGCAA+GGG | + | chr8.4:13138772-13138791 | None:intergenic | 30.0% |
| ! | TTGTTATTGCAAGGGATAAA+TGG | - | chr8.4:13138197-13138216 | MS.gene036601:intron | 30.0% |
| !! | ATATGCTTAATTTGTCTTGC+AGG | - | chr8.4:13138084-13138103 | MS.gene036601:intron | 30.0% |
| !!! | TGAAATGGGTCAACTTTTTT+GGG | + | chr8.4:13139841-13139860 | None:intergenic | 30.0% |
| AACAAAAGACGCAAAGACAA+TGG | + | chr8.4:13140478-13140497 | None:intergenic | 35.0% | |
| AAGCATATGCAGTTAGTAGA+AGG | + | chr8.4:13138072-13138091 | None:intergenic | 35.0% | |
| AATAGGTATGCATCAGAGAA+TGG | + | chr8.4:13139075-13139094 | None:intergenic | 35.0% | |
| AATCCTTAGTGCTAAATCTG+CGG | - | chr8.4:13140759-13140778 | MS.gene036601:intron | 35.0% | |
| ACAAAAGACGCAAAGACAAT+GGG | + | chr8.4:13140477-13140496 | None:intergenic | 35.0% | |
| AGGCTAATTACATGCTACAT+AGG | - | chr8.4:13140422-13140441 | MS.gene036601:intron | 35.0% | |
| ATCAAAACCACCAATAAAGG+TGG | + | chr8.4:13139003-13139022 | None:intergenic | 35.0% | |
| ATCATTATCAACTCTAGTGG+TGG | + | chr8.4:13137716-13137735 | None:intergenic | 35.0% | |
| CAACCAAATTTGGAGAACTT+TGG | + | chr8.4:13137663-13137682 | None:intergenic | 35.0% | |
| CACGTTAAAATTGTGGTTGA+TGG | + | chr8.4:13137376-13137395 | None:intergenic | 35.0% | |
| CTTCTTGTCTCTGATGTTTA+TGG | - | chr8.4:13137183-13137202 | MS.gene036601:intron | 35.0% | |
| GCAAATGGCTCAGTTATTAT+GGG | + | chr8.4:13139805-13139824 | None:intergenic | 35.0% | |
| TCAAAACCACCAATAAAGGT+GGG | + | chr8.4:13139002-13139021 | None:intergenic | 35.0% | |
| TCAGCTCCAAGTATAGAAAA+TGG | + | chr8.4:13140694-13140713 | None:intergenic | 35.0% | |
| TCTAACTTATGTCGGTAACT+CGG | - | chr8.4:13140506-13140525 | MS.gene036601:intron | 35.0% | |
| TGCAAATGGCTCAGTTATTA+TGG | + | chr8.4:13139806-13139825 | None:intergenic | 35.0% | |
| TGCATGTGTTTCATAGTTCA+TGG | - | chr8.4:13137539-13137558 | MS.gene036601:CDS | 35.0% | |
| TGTGAAATGAGTAAATGGCT+CGG | - | chr8.4:13140015-13140034 | MS.gene036601:intron | 35.0% | |
| TTGCCAAAGTTCTCCAAATT+TGG | - | chr8.4:13137657-13137676 | MS.gene036601:intron | 35.0% | |
| TTGTTTGTTCACTGCTTTGA+AGG | - | chr8.4:13138653-13138672 | MS.gene036601:intron | 35.0% | |
| ! | ATGCAGTTAGTAGAAGGTTT+TGG | + | chr8.4:13138066-13138085 | None:intergenic | 35.0% |
| ! | ATTTTCGTACAGAAAAGGTG+TGG | + | chr8.4:13139265-13139284 | None:intergenic | 35.0% |
| ! | CATTAGCCTGACGATAAATA+TGG | + | chr8.4:13139679-13139698 | None:intergenic | 35.0% |
| ! | GATATGAAGCGCCAAATTTA+AGG | - | chr8.4:13138106-13138125 | MS.gene036601:intron | 35.0% |
| ! | TAAGATGCAGTTTAATGGAC+TGG | - | chr8.4:13140378-13140397 | MS.gene036601:intron | 35.0% |
| !! | AAGATGCAGTTTAATGGACT+GGG | - | chr8.4:13140379-13140398 | MS.gene036601:intron | 35.0% |
| !! | AGTAAAGGTGTTTCATCTGT+CGG | - | chr8.4:13139153-13139172 | MS.gene036601:intron | 35.0% |
| !! | CAGAGGTATTTCAAACACAA+TGG | - | chr8.4:13140220-13140239 | MS.gene036601:intron | 35.0% |
| !! | CATGTACCTTGTTATTGCAA+GGG | - | chr8.4:13138189-13138208 | MS.gene036601:intron | 35.0% |
| !! | TTTTCGTACAGAAAAGGTGT+GGG | + | chr8.4:13139264-13139283 | None:intergenic | 35.0% |
| !!! | CCTTTATTGGTGGTTTTGAT+CGG | - | chr8.4:13139003-13139022 | MS.gene036601:intron | 35.0% |
| !!! | GTGAAATGGGTCAACTTTTT+TGG | + | chr8.4:13139842-13139861 | None:intergenic | 35.0% |
| AAGCTAAACACACGCATTGT+TGG | - | chr8.4:13140950-13140969 | MS.gene036601:intron | 40.0% | |
| AATATGATACAGGGTCCCTT+TGG | - | chr8.4:13137736-13137755 | MS.gene036601:intron | 40.0% | |
| AGAGAAGAGAAGAGAAGAGA+AGG | + | chr8.4:13137211-13137230 | None:intergenic | 40.0% | |
| ATCAGAGACAAGAAGAACAG+CGG | + | chr8.4:13137178-13137197 | None:intergenic | 40.0% | |
| ATGGCTCAGTTATTATGGGA+CGG | + | chr8.4:13139801-13139820 | None:intergenic | 40.0% | |
| CCGATCAAAACCACCAATAA+AGG | + | chr8.4:13139006-13139025 | None:intergenic | 40.0% | |
| GATTGTAGGGTTCACCATTA+AGG | + | chr8.4:13138732-13138751 | None:intergenic | 40.0% | |
| GTTTCTGTGGACGACATAAA+GGG | - | chr8.4:13139459-13139478 | MS.gene036601:CDS | 40.0% | |
| TATGAAACACATGCACTCCT+CGG | + | chr8.4:13137534-13137553 | None:intergenic | 40.0% | |
| TCAAACTGTTTCACAAGCTC+TGG | + | chr8.4:13140736-13140755 | None:intergenic | 40.0% | |
| TCGTCCACAGAAACAAATGA+TGG | + | chr8.4:13139453-13139472 | None:intergenic | 40.0% | |
| ! | AGAACAGCGGATTTGGAATT+AGG | + | chr8.4:13137165-13137184 | None:intergenic | 40.0% |
| ! | TCCTAGTGTTTTACATGCGT+CGG | + | chr8.4:13137501-13137520 | None:intergenic | 40.0% |
| ! | TGTTTCTGTGGACGACATAA+AGG | - | chr8.4:13139458-13139477 | MS.gene036601:CDS | 40.0% |
| !! | ATGGCTCGGTTAATCTAGAA+CGG | - | chr8.4:13140029-13140048 | MS.gene036601:intron | 40.0% |
| !! | GCATCCATCATTTGTTTCTG+TGG | - | chr8.4:13139446-13139465 | MS.gene036601:intron | 40.0% |
| !! | GCATGTACCTTGTTATTGCA+AGG | - | chr8.4:13138188-13138207 | MS.gene036601:intron | 40.0% |
| !! | GTAAAGGTGTTTCATCTGTC+GGG | - | chr8.4:13139154-13139173 | MS.gene036601:intron | 40.0% |
| !! | TAAAGGTGTTTCATCTGTCG+GGG | - | chr8.4:13139155-13139174 | MS.gene036601:intron | 40.0% |
| AAACCACCAATAAAGGTGGG+AGG | + | chr8.4:13138999-13139018 | None:intergenic | 45.0% | |
| AAAGCAGTGCTCACATAAGC+AGG | + | chr8.4:13138275-13138294 | None:intergenic | 45.0% | |
| AAATAGGCAAGGGCCTATCA+GGG | + | chr8.4:13138762-13138781 | None:intergenic | 45.0% | |
| ACTAGGACACAGTTAATCCG+AGG | - | chr8.4:13137514-13137533 | MS.gene036601:CDS | 45.0% | |
| AGCTGTGAAAACTGCAGATG+AGG | - | chr8.4:13141135-13141154 | MS.gene036601:CDS | 45.0% | |
| AGTTCGTGGTCTATGAAGCA+CGG | - | chr8.4:13137442-13137461 | MS.gene036601:intron | 45.0% | |
| ATCCAGACTTATCCAAGCTG+CGG | - | chr8.4:13139416-13139435 | MS.gene036601:intron | 45.0% | |
| ATTAGGAGAACCGACGATGT+AGG | + | chr8.4:13137148-13137167 | None:intergenic | 45.0% | |
| CAATAAAGGTGGGAGGACAA+TGG | + | chr8.4:13138992-13139011 | None:intergenic | 45.0% | |
| CACATCAAGACTTACTGGAC+TGG | - | chr8.4:13141158-13141177 | MS.gene036601:CDS | 45.0% | |
| CATTGTCCTCCCACCTTTAT+TGG | - | chr8.4:13138990-13139009 | MS.gene036601:intron | 45.0% | |
| CTCAGTTATTATGGGACGGA+GGG | + | chr8.4:13139797-13139816 | None:intergenic | 45.0% | |
| GACGCAAAGACAATGGGAAA+AGG | + | chr8.4:13140471-13140490 | None:intergenic | 45.0% | |
| GGGTTCACCATTAAGGAAGT+CGG | + | chr8.4:13138725-13138744 | None:intergenic | 45.0% | |
| GGTTCACCATTAAGGAAGTC+GGG | + | chr8.4:13138724-13138743 | None:intergenic | 45.0% | |
| GTACTTAGCTGCCTCATGAT+TGG | - | chr8.4:13140272-13140291 | MS.gene036601:intron | 45.0% | |
| GTTAACTAGGTCCAAGTTCG+TGG | - | chr8.4:13137428-13137447 | MS.gene036601:intron | 45.0% | |
| GTTGTTCCCGACTTCCTTAA+TGG | - | chr8.4:13138715-13138734 | MS.gene036601:intron | 45.0% | |
| TCTGGTCACGTTGAAAAGCT+TGG | - | chr8.4:13137111-13137130 | MS.gene036601:CDS | 45.0% | |
| TGACCGCAGATTTAGCACTA+AGG | + | chr8.4:13140765-13140784 | None:intergenic | 45.0% | |
| TGAGGCACATCAAGACTTAC+TGG | - | chr8.4:13141153-13141172 | MS.gene036601:CDS | 45.0% | |
| TGCTTCATAGACCACGAACT+TGG | + | chr8.4:13137442-13137461 | None:intergenic | 45.0% | |
| TTCACAGCTTCTGCATCTTC+CGG | + | chr8.4:13141124-13141143 | None:intergenic | 45.0% | |
| TTCCTAAAGTTTCCCATGGC+TGG | - | chr8.4:13141083-13141102 | MS.gene036601:CDS | 45.0% | |
| ! | AACTGTTTCACAAGCTCTGG+AGG | + | chr8.4:13140733-13140752 | None:intergenic | 45.0% |
| ! | CTCGGTTAATCTAGAACGGA+GGG | - | chr8.4:13140033-13140052 | MS.gene036601:intron | 45.0% |
| ! | GACAAGAAGAACAGCGGATT+TGG | + | chr8.4:13137172-13137191 | None:intergenic | 45.0% |
| ! | TGCAGCTGCTGGTTATTATG+TGG | - | chr8.4:13138693-13138712 | MS.gene036601:intron | 45.0% |
| !! | CATTCGGATTCAGTGTTGGT+GGG | + | chr8.4:13137086-13137105 | None:intergenic | 45.0% |
| !!! | ACATATTTTTTTTTTTTTTT+TGG | - | chr8.4:13140924-13140943 | MS.gene036601:intron | 5.0% |
| ACAATCCCGAGAACCCTGAT+AGG | - | chr8.4:13138746-13138765 | MS.gene036601:intron | 50.0% | |
| ACGTGACCAGATCCTGCATT+CGG | + | chr8.4:13137102-13137121 | None:intergenic | 50.0% | |
| ATCAGGGTTCTCGGGATTGT+AGG | + | chr8.4:13138746-13138765 | None:intergenic | 50.0% | |
| ATGCAGTATGAGGGCCTGTT+TGG | + | chr8.4:13137946-13137965 | None:intergenic | 50.0% | |
| CAAATAGGCAAGGGCCTATC+AGG | + | chr8.4:13138763-13138782 | None:intergenic | 50.0% | |
| CCAACACTGAATCCGAATGC+AGG | - | chr8.4:13137087-13137106 | MS.gene036601:CDS | 50.0% | |
| CCTGCATTCGGATTCAGTGT+TGG | + | chr8.4:13137090-13137109 | None:intergenic | 50.0% | |
| CTGAATCCGAATGCAGGATC+TGG | - | chr8.4:13137093-13137112 | MS.gene036601:CDS | 50.0% | |
| CTGATAGGCCCTTGCCTATT+TGG | - | chr8.4:13138761-13138780 | MS.gene036601:intron | 50.0% | |
| GCCGACGCATGTAAAACACT+AGG | - | chr8.4:13137497-13137516 | MS.gene036601:CDS | 50.0% | |
| GCTCAGTTATTATGGGACGG+AGG | + | chr8.4:13139798-13139817 | None:intergenic | 50.0% | |
| GCTCTCAATGCCTACATCGT+CGG | - | chr8.4:13137135-13137154 | MS.gene036601:CDS | 50.0% | |
| GTATCTCACAGTCCAGCCAT+GGG | + | chr8.4:13141098-13141117 | None:intergenic | 50.0% | |
| GTATGAGGGCCTGTTTGGAT+TGG | + | chr8.4:13137941-13137960 | None:intergenic | 50.0% | |
| GTCCAGCCATGGGAAACTTT+AGG | + | chr8.4:13141088-13141107 | None:intergenic | 50.0% | |
| TCACAGCTTCTGCATCTTCC+GGG | + | chr8.4:13141123-13141142 | None:intergenic | 50.0% | |
| TCAGGGTTCTCGGGATTGTA+GGG | + | chr8.4:13138745-13138764 | None:intergenic | 50.0% | |
| TGTATCTCACAGTCCAGCCA+TGG | + | chr8.4:13141099-13141118 | None:intergenic | 50.0% | |
| TGTCCTCCCACCTTTATTGG+TGG | - | chr8.4:13138993-13139012 | MS.gene036601:intron | 50.0% | |
| ! | GCATTCGGATTCAGTGTTGG+TGG | + | chr8.4:13137087-13137106 | None:intergenic | 50.0% |
| ! | GCTCGGTTAATCTAGAACGG+AGG | - | chr8.4:13140032-13140051 | MS.gene036601:intron | 50.0% |
| AAGGGCCTATCAGGGTTCTC+GGG | + | chr8.4:13138754-13138773 | None:intergenic | 55.0% | |
| CAAGGGCCTATCAGGGTTCT+CGG | + | chr8.4:13138755-13138774 | None:intergenic | 55.0% | |
| CACCGCAGCTTGGATAAGTC+TGG | + | chr8.4:13139421-13139440 | None:intergenic | 55.0% | |
| CTGGACTGTGAGATACAGCC+CGG | - | chr8.4:13141102-13141121 | MS.gene036601:CDS | 55.0% | |
| GCAGACAAAGTTGCAGCTGC+TGG | - | chr8.4:13138682-13138701 | MS.gene036601:intron | 55.0% | |
| GGTCTATGAAGCACGGACAC+CGG | - | chr8.4:13137449-13137468 | MS.gene036601:intron | 55.0% | |
| ! | CGGGGCTGCTGGATTTTGTT+GGG | - | chr8.4:13139173-13139192 | MS.gene036601:intron | 55.0% |
| ! | GCTGCTGGATTTTGTTGGGG+TGG | - | chr8.4:13139177-13139196 | MS.gene036601:intron | 55.0% |
| ! | GGGGCTGCTGGATTTTGTTG+GGG | - | chr8.4:13139174-13139193 | MS.gene036601:intron | 55.0% |
| ! | TCGGGGCTGCTGGATTTTGT+TGG | - | chr8.4:13139172-13139191 | MS.gene036601:intron | 55.0% |
| !! | GTTTTACATGCGTCGGCGTC+CGG | + | chr8.4:13137494-13137513 | None:intergenic | 55.0% |
| ACACCACACACCGACGACAC+CGG | - | chr8.4:13137472-13137491 | MS.gene036601:intron | 60.0% | |
| GATGCAACAGCACCGCAGCT+TGG | + | chr8.4:13139431-13139450 | None:intergenic | 60.0% | |
| GTTTCATCTGTCGGGGCTGC+TGG | - | chr8.4:13139162-13139181 | MS.gene036601:intron | 60.0% | |
| TGTCGTCGGTGTGTGGTGTC+CGG | + | chr8.4:13137471-13137490 | None:intergenic | 60.0% | |
| !! | CGTCCGGTGTCGTCGGTGTG+TGG | + | chr8.4:13137478-13137497 | None:intergenic | 70.0% |
| !! | GCGTCGGCGTCCGGTGTCGT+CGG | + | chr8.4:13137485-13137504 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 13137057 | 13141201 | 13137057 | ID=MS.gene036601 |
| chr8.4 | mRNA | 13137057 | 13141201 | 13137057 | ID=MS.gene036601.t1;Parent=MS.gene036601 |
| chr8.4 | exon | 13141054 | 13141201 | 13141054 | ID=MS.gene036601.t1.exon1;Parent=MS.gene036601.t1 |
| chr8.4 | CDS | 13141054 | 13141201 | 13141054 | ID=cds.MS.gene036601.t1;Parent=MS.gene036601.t1 |
| chr8.4 | exon | 13140131 | 13140152 | 13140131 | ID=MS.gene036601.t1.exon2;Parent=MS.gene036601.t1 |
| chr8.4 | CDS | 13140131 | 13140152 | 13140131 | ID=cds.MS.gene036601.t1;Parent=MS.gene036601.t1 |
| chr8.4 | exon | 13139457 | 13139583 | 13139457 | ID=MS.gene036601.t1.exon3;Parent=MS.gene036601.t1 |
| chr8.4 | CDS | 13139457 | 13139583 | 13139457 | ID=cds.MS.gene036601.t1;Parent=MS.gene036601.t1 |
| chr8.4 | exon | 13139060 | 13139150 | 13139060 | ID=MS.gene036601.t1.exon4;Parent=MS.gene036601.t1 |
| chr8.4 | CDS | 13139060 | 13139150 | 13139060 | ID=cds.MS.gene036601.t1;Parent=MS.gene036601.t1 |
| chr8.4 | exon | 13138778 | 13138867 | 13138778 | ID=MS.gene036601.t1.exon5;Parent=MS.gene036601.t1 |
| chr8.4 | CDS | 13138778 | 13138867 | 13138778 | ID=cds.MS.gene036601.t1;Parent=MS.gene036601.t1 |
| chr8.4 | exon | 13137478 | 13137578 | 13137478 | ID=MS.gene036601.t1.exon6;Parent=MS.gene036601.t1 |
| chr8.4 | CDS | 13137478 | 13137578 | 13137478 | ID=cds.MS.gene036601.t1;Parent=MS.gene036601.t1 |
| chr8.4 | exon | 13137057 | 13137194 | 13137057 | ID=MS.gene036601.t1.exon7;Parent=MS.gene036601.t1 |
| chr8.4 | CDS | 13137057 | 13137194 | 13137057 | ID=cds.MS.gene036601.t1;Parent=MS.gene036601.t1 |
| Gene Sequence |
| Protein sequence |
