Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61602.t1 | XP_013455676.1 | 99.2 | 243 | 2 | 0 | 1 | 243 | 34 | 276 | 5.90E-136 | 493.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61602.t1 | P46209 | 31.6 | 225 | 129 | 7 | 28 | 242 | 22 | 231 | 1.4e-21 | 104.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61602.t1 | A0A072UJ41 | 99.2 | 243 | 2 | 0 | 1 | 243 | 34 | 276 | 4.3e-136 | 493.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene036601 | MS.gene61602 | PPI |
MS.gene041454 | MS.gene61602 | PPI |
MS.gene57720 | MS.gene61602 | PPI |
MS.gene58725 | MS.gene61602 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61602.t1 | MTR_4g049830 | 99.177 | 243 | 2 | 0 | 1 | 243 | 34 | 276 | 1.43e-180 | 496 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61602.t1 | AT2G32520 | 84.298 | 242 | 35 | 2 | 1 | 242 | 39 | 277 | 1.53e-150 | 421 |
MS.gene61602.t1 | AT2G32520 | 84.298 | 242 | 35 | 2 | 1 | 242 | 1 | 239 | 3.08e-150 | 418 |
MS.gene61602.t1 | AT2G32520 | 84.298 | 242 | 35 | 2 | 1 | 242 | 79 | 317 | 3.75e-150 | 421 |
MS.gene61602.t1 | AT2G32520 | 85.202 | 223 | 33 | 0 | 20 | 242 | 3 | 225 | 2.59e-143 | 400 |
Find 68 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATGCTGTTGTAGCTTTCTA+TGG | 0.249743 | 4.1:+48044264 | MS.gene61602:CDS |
TGTTATCATCTCTTTGAATC+TGG | 0.273020 | 4.1:-48041351 | None:intergenic |
CATGCAGGCTGCCAAGGCTT+TGG | 0.317707 | 4.1:+48045014 | MS.gene61602:intron |
TCAAGCCAAGGCTCCTGTTC+AGG | 0.338295 | 4.1:+48044317 | MS.gene61602:CDS |
GAGGAGAAGTTGAAGGCATC+TGG | 0.384697 | 4.1:+48045036 | MS.gene61602:CDS |
ACATTTGATGCGTACGTCAT+TGG | 0.386143 | 4.1:+48042339 | MS.gene61602:CDS |
TGCAATTGCAAGCTCTGTCT+TGG | 0.389315 | 4.1:+48044230 | MS.gene61602:CDS |
TGCAGAAGCACAGCATTTGA+TGG | 0.390572 | 4.1:+48042610 | MS.gene61602:CDS |
TGGTGTAACTGGATTCTGTA+TGG | 0.391719 | 4.1:+48044197 | MS.gene61602:CDS |
TCCTGGAGCACTACAATTCC+AGG | 0.402054 | 4.1:-48042375 | None:intergenic |
AATCCACACCCCACCACTCC+TGG | 0.411434 | 4.1:-48042392 | None:intergenic |
ACATTCATGCTTCAGTTGAC+TGG | 0.413380 | 4.1:+48042663 | MS.gene61602:CDS |
TCTCCAAAGTGAGCCTGAAC+AGG | 0.427638 | 4.1:-48044330 | None:intergenic |
GTATAGAGGAAAGGTTGGTC+TGG | 0.438275 | 4.1:+48042583 | MS.gene61602:CDS |
ACAGGAGCCTTGGCTTGAGC+AGG | 0.438480 | 4.1:-48044312 | None:intergenic |
ATTGGCAAGCACGATGCTCC+TGG | 0.439582 | 4.1:+48042357 | MS.gene61602:CDS |
GCTCCAGGAGTGGTGGGGTG+TGG | 0.440846 | 4.1:+48042389 | MS.gene61602:CDS |
GGTGTAACTGGATTCTGTAT+GGG | 0.448505 | 4.1:+48044198 | MS.gene61602:CDS |
GTTGACTGGCTTAAAGCAAA+TGG | 0.453966 | 4.1:+48042677 | MS.gene61602:CDS |
ACAGTCATGCATTCATGAAC+AGG | 0.454518 | 4.1:+48045091 | MS.gene61602:CDS |
TAAAGCAAATGGTTCAAAGA+AGG | 0.456452 | 4.1:+48042688 | MS.gene61602:CDS |
TCAGGCTCACTTTGGAGAGC+TGG | 0.461699 | 4.1:+48044335 | MS.gene61602:CDS |
ATTTGATGGATGGTCTTGAT+TGG | 0.463655 | 4.1:+48042624 | MS.gene61602:CDS |
GTGTAACTGGATTCTGTATG+GGG | 0.468243 | 4.1:+48044199 | MS.gene61602:CDS |
GCAGGCTGCCAAGGCTTTGG+AGG | 0.468360 | 4.1:+48045017 | MS.gene61602:intron |
ATGTCTCATGCAGGCTGCCA+AGG | 0.474747 | 4.1:+48045008 | MS.gene61602:intron |
TCCTGGAATTGTAGTGCTCC+AGG | 0.475207 | 4.1:+48042374 | MS.gene61602:CDS |
GGTCAACTGAAGGAATCAAT+AGG | 0.478292 | 4.1:+48045112 | MS.gene61602:CDS |
TTGTAGTGCTCCAGGAGTGG+TGG | 0.482110 | 4.1:+48042382 | MS.gene61602:CDS |
GCTCCTGTTCAGGCTCACTT+TGG | 0.484552 | 4.1:+48044327 | MS.gene61602:CDS |
ACTGAAGCTTCATCTTCATC+AGG | 0.490861 | 4.1:-48045153 | None:intergenic |
CAACTTCTCCTCCAAAGCCT+TGG | 0.502223 | 4.1:-48045025 | None:intergenic |
GGCTTTGGAGGAGAAGTTGA+AGG | 0.512111 | 4.1:+48045029 | MS.gene61602:CDS |
CTAGTAATAAATTACCTAGC+TGG | 0.513168 | 4.1:-48045223 | None:intergenic |
GTGAGCCTGAACAGGAGCCT+TGG | 0.516240 | 4.1:-48044322 | None:intergenic |
TGTAGTGCTCCAGGAGTGGT+GGG | 0.520604 | 4.1:+48042383 | MS.gene61602:CDS |
ATGAATGCATGACTGTTGCC+AGG | 0.525116 | 4.1:-48045084 | None:intergenic |
CAGTTCAGCTCGCATGGTCG+CGG | 0.528504 | 4.1:+48045172 | MS.gene61602:CDS |
AAGCTTCAGTTCAGCTCGCA+TGG | 0.544132 | 4.1:+48045166 | MS.gene61602:CDS |
CCGCAGTCTGTATAGAGGAA+AGG | 0.544545 | 4.1:+48042574 | MS.gene61602:intron |
ATGATTTCTCAACTTGGCCG+TGG | 0.545015 | 4.1:+48042438 | MS.gene61602:CDS |
TGAATGTCCTTCACAGCACC+TGG | 0.545370 | 4.1:-48042647 | None:intergenic |
CATGGTCGCGGTTCCAATCG+TGG | 0.545374 | 4.1:+48045184 | MS.gene61602:CDS |
AATCAATAGGAGGAAGAACA+TGG | 0.545686 | 4.1:+48045125 | MS.gene61602:CDS |
GGGTCTGCAAGTTCAGAAGA+AGG | 0.545874 | 4.1:-48044291 | None:intergenic |
ATGGATGGTCTTGATTGGCC+AGG | 0.549534 | 4.1:+48042629 | MS.gene61602:CDS |
TGCAGACCCTGCTCAAGCCA+AGG | 0.561123 | 4.1:+48044305 | MS.gene61602:CDS |
GAAGCACAGCATTTGATGGA+TGG | 0.575526 | 4.1:+48042614 | MS.gene61602:CDS |
TGATTGGCCAGGTGCTGTGA+AGG | 0.587429 | 4.1:+48042640 | MS.gene61602:CDS |
GGATAAGAGCTTTAAATCCA+CGG | 0.597090 | 4.1:-48042455 | None:intergenic |
GGGTATATGTGTACCTCATG+TGG | 0.597791 | 4.1:-48045063 | None:intergenic |
AGTACTGTGTCATCCACGAT+TGG | 0.602092 | 4.1:-48045197 | None:intergenic |
CAGGAGCCTTGGCTTGAGCA+GGG | 0.602268 | 4.1:-48044311 | None:intergenic |
GCTGCTATGATTTCTCAACT+TGG | 0.611149 | 4.1:+48042432 | MS.gene61602:CDS |
TTCATGAACAGGTCAACTGA+AGG | 0.617778 | 4.1:+48045102 | MS.gene61602:CDS |
AGTCTGTATAGAGGAAAGGT+TGG | 0.617998 | 4.1:+48042578 | MS.gene61602:intron |
CAACTGAAGGAATCAATAGG+AGG | 0.618505 | 4.1:+48045115 | MS.gene61602:CDS |
GTAACTGGATTCTGTATGGG+GGG | 0.624606 | 4.1:+48044201 | MS.gene61602:CDS |
TGTAACTGGATTCTGTATGG+GGG | 0.630703 | 4.1:+48044200 | MS.gene61602:CDS |
AGGGGCAGCAGAGTGAGCCA+TGG | 0.635296 | 4.1:-48041317 | None:intergenic |
GAATTGTAGTGCTCCAGGAG+TGG | 0.651111 | 4.1:+48042379 | MS.gene61602:CDS |
ATCAATAGGAGGAAGAACAT+GGG | 0.656787 | 4.1:+48045126 | MS.gene61602:CDS |
GCTACAACAGCATCAACATG+TGG | 0.662195 | 4.1:-48044255 | None:intergenic |
GTAGTGCTCCAGGAGTGGTG+GGG | 0.672015 | 4.1:+48042384 | MS.gene61602:CDS |
GACACAGTACTTGTCCAGCT+AGG | 0.679629 | 4.1:+48045209 | MS.gene61602:CDS |
TGAATGCATGACTGTTGCCA+GGG | 0.681441 | 4.1:-48045083 | None:intergenic |
GGCATCTGGAATTCCACATG+AGG | 0.693376 | 4.1:+48045050 | MS.gene61602:CDS |
CATGAGGTACACATATACCC+TGG | 0.700589 | 4.1:+48045066 | MS.gene61602:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAATTTTAAAAAAAGTAGA+TGG | + | chr4.1:48041881-48041900 | MS.gene61602:intron | 10.0% |
!!! | TCAATTTTTTTCATTTTAAA+GGG | + | chr4.1:48041439-48041458 | MS.gene61602:intron | 10.0% |
!!! | TTCAATTTTTTTCATTTTAA+AGG | + | chr4.1:48041438-48041457 | MS.gene61602:intron | 10.0% |
!!! | TTTAATATTGTTTTTGTAAT+TGG | + | chr4.1:48041617-48041636 | MS.gene61602:intron | 10.0% |
!! | AAAGTGAATGAAATAAATAA+TGG | - | chr4.1:48043253-48043272 | None:intergenic | 15.0% |
!! | AAGTGAATGAAATAAATAAT+GGG | - | chr4.1:48043252-48043271 | None:intergenic | 15.0% |
!! | ATTGCTAAATATATAATTCT+TGG | - | chr4.1:48042894-48042913 | None:intergenic | 15.0% |
!!! | ACAAATTTTGTAAAAGAAAA+CGG | + | chr4.1:48042157-48042176 | MS.gene61602:intron | 15.0% |
!!! | CAATTTTTTTCATTTTAAAG+GGG | + | chr4.1:48041440-48041459 | MS.gene61602:intron | 15.0% |
!!! | TTTTTTAGTTTTTGGAAATT+TGG | + | chr4.1:48041465-48041484 | MS.gene61602:intron | 15.0% |
!! | AACAGAGATTAAATATTTCT+AGG | - | chr4.1:48042502-48042521 | None:intergenic | 20.0% |
!! | AGATGAAAGAATAAAAATGA+TGG | - | chr4.1:48044512-48044531 | None:intergenic | 20.0% |
!! | CAATCTGTTTATTCAATTAT+TGG | + | chr4.1:48044069-48044088 | MS.gene61602:intron | 20.0% |
!! | CCACATAAGTTAATAAAAAA+AGG | - | chr4.1:48043738-48043757 | None:intergenic | 20.0% |
!! | CCTCTAATTAAAACAAAATT+AGG | - | chr4.1:48044128-48044147 | None:intergenic | 20.0% |
!! | TCAAAATACATTCTCTAATA+TGG | + | chr4.1:48043161-48043180 | MS.gene61602:intron | 20.0% |
!! | TTTAATTAGAGGTAAATCAT+TGG | + | chr4.1:48044136-48044155 | MS.gene61602:intron | 20.0% |
!!! | AACTTCTAGAAATTAAATAC+TGG | - | chr4.1:48043838-48043857 | None:intergenic | 20.0% |
!!! | ACTTTTCTATTATTCTTGTA+AGG | - | chr4.1:48043767-48043786 | None:intergenic | 20.0% |
!!! | ATCAATATTTTGTTCTCTAA+TGG | + | chr4.1:48043565-48043584 | MS.gene61602:intron | 20.0% |
!!! | ATGATAATGAATAATCATCA+GGG | + | chr4.1:48041577-48041596 | MS.gene61602:intron | 20.0% |
!!! | ATTTTCCATTGATCTAAAAA+TGG | + | chr4.1:48044730-48044749 | MS.gene61602:intron | 20.0% |
!!! | CATAAAGTTTTGATTTAGAT+TGG | + | chr4.1:48041754-48041773 | MS.gene61602:intron | 20.0% |
!!! | CCTAATTTTGTTTTAATTAG+AGG | + | chr4.1:48044125-48044144 | MS.gene61602:intron | 20.0% |
!!! | CCTTTTTTTATTAACTTATG+TGG | + | chr4.1:48043735-48043754 | MS.gene61602:intron | 20.0% |
!!! | TAATAGAGTTTATTGACTTA+AGG | + | chr4.1:48043966-48043985 | MS.gene61602:intron | 20.0% |
!!! | TAATTCCATTTTTAGATCAA+TGG | - | chr4.1:48044738-48044757 | None:intergenic | 20.0% |
!!! | TATGATAATGAATAATCATC+AGG | + | chr4.1:48041576-48041595 | MS.gene61602:intron | 20.0% |
!!! | TATTTAATTTCTAGAAGTTG+TGG | + | chr4.1:48043839-48043858 | MS.gene61602:intron | 20.0% |
!!! | TTAAAACCTTATCTTTTCAA+TGG | - | chr4.1:48044774-48044793 | None:intergenic | 20.0% |
!!! | TTCAATTATTGGTTTATGTT+TGG | + | chr4.1:48044080-48044099 | MS.gene61602:intron | 20.0% |
!!! | TTGATTTTTGATAGTGATAT+AGG | + | chr4.1:48041683-48041702 | MS.gene61602:intron | 20.0% |
!!! | TTTTTAGATCAATGGAAAAT+AGG | - | chr4.1:48044730-48044749 | None:intergenic | 20.0% |
! | AATCATCAAAGAGTTTACTT+AGG | - | chr4.1:48044959-48044978 | None:intergenic | 25.0% |
! | AATGTTCCATTGAAAAGATA+AGG | + | chr4.1:48044765-48044784 | MS.gene61602:intron | 25.0% |
! | ACAATTACAAAGCATGTATT+AGG | - | chr4.1:48042850-48042869 | None:intergenic | 25.0% |
! | ATTAGTAAGTTTGAAAGTTG+TGG | - | chr4.1:48043796-48043815 | None:intergenic | 25.0% |
! | GCAATGTTTATAAATGAAGT+TGG | + | chr4.1:48043939-48043958 | MS.gene61602:intron | 25.0% |
! | TAAATGCAGAAATGTAATCT+TGG | - | chr4.1:48044825-48044844 | None:intergenic | 25.0% |
! | TCAATGGAAAATAGGATTAT+AGG | - | chr4.1:48044722-48044741 | None:intergenic | 25.0% |
! | TCTAACTGTATTAAAGTTGT+AGG | + | chr4.1:48042977-48042996 | MS.gene61602:intron | 25.0% |
! | TGACTTAAGGTAATTATTGT+CGG | + | chr4.1:48043979-48043998 | MS.gene61602:intron | 25.0% |
! | TTAGTAAGTTTGAAAGTTGT+GGG | - | chr4.1:48043795-48043814 | None:intergenic | 25.0% |
! | TTCAAATCACTAACAATGTA+AGG | + | chr4.1:48043866-48043885 | MS.gene61602:intron | 25.0% |
!! | AACCAATTTGATGTTGTTTA+AGG | - | chr4.1:48043282-48043301 | None:intergenic | 25.0% |
!! | ACCAATTTGATGTTGTTTAA+GGG | - | chr4.1:48043281-48043300 | None:intergenic | 25.0% |
!!! | AACTTATCTTTCATTTTGAC+AGG | + | chr4.1:48044173-48044192 | MS.gene61602:intron | 25.0% |
!!! | AAGGGGATTTTTTTAGTTTT+TGG | + | chr4.1:48041457-48041476 | MS.gene61602:intron | 25.0% |
!!! | ATTGATTTGAATAGTTCATG+AGG | - | chr4.1:48043047-48043066 | None:intergenic | 25.0% |
!!! | ATTTGGTTTTGACTTTGATT+TGG | + | chr4.1:48041482-48041501 | MS.gene61602:intron | 25.0% |
!!! | GTTTTAATTTGAGAGTATGT+AGG | + | chr4.1:48042770-48042789 | MS.gene61602:intron | 25.0% |
!!! | TCTGTTGATTTGTTCTTAAA+GGG | + | chr4.1:48042717-48042736 | MS.gene61602:intron | 25.0% |
!!! | TTCTGTTGATTTGTTCTTAA+AGG | + | chr4.1:48042716-48042735 | MS.gene61602:intron | 25.0% |
!!! | TTTGGTTTTGACTTTGATTT+GGG | + | chr4.1:48041483-48041502 | MS.gene61602:intron | 25.0% |
ACAACAATGATTGTGATAGA+GGG | + | chr4.1:48042081-48042100 | MS.gene61602:intron | 30.0% | |
ACAATAACTCCAAAATTTCG+TGG | + | chr4.1:48043351-48043370 | MS.gene61602:intron | 30.0% | |
AGAAAGGTTAAAGCTTATTG+AGG | - | chr4.1:48044693-48044712 | None:intergenic | 30.0% | |
AGAGAACAGAAAACAAAACA+CGG | - | chr4.1:48044931-48044950 | None:intergenic | 30.0% | |
ATATGGTATAAGTGTCTTCT+AGG | + | chr4.1:48043178-48043197 | MS.gene61602:intron | 30.0% | |
ATATTTGGATGATGTGTGAT+TGG | + | chr4.1:48042539-48042558 | MS.gene61602:intron | 30.0% | |
ATCAAGGCTTCAAATTCATT+AGG | - | chr4.1:48043640-48043659 | None:intergenic | 30.0% | |
ATCAGAAACATGAAGTAATC+AGG | + | chr4.1:48042238-48042257 | MS.gene61602:intron | 30.0% | |
CAAATTTCTGAGTCATAAGT+AGG | + | chr4.1:48041799-48041818 | MS.gene61602:intron | 30.0% | |
CATTAATCTATGAGGAATTG+AGG | - | chr4.1:48044043-48044062 | None:intergenic | 30.0% | |
CTATCAAAAATCAATCAGAG+TGG | - | chr4.1:48041677-48041696 | None:intergenic | 30.0% | |
GGATTATAGGAATGATAGAA+AGG | - | chr4.1:48044709-48044728 | None:intergenic | 30.0% | |
TAAAGCAAATGGTTCAAAGA+AGG | + | chr4.1:48042688-48042707 | MS.gene61602:CDS | 30.0% | |
TAATGTGAAGATGAACTAAG+AGG | + | chr4.1:48043812-48043831 | MS.gene61602:intron | 30.0% | |
TATTTGAGTGGTAAAACTCT+AGG | - | chr4.1:48044663-48044682 | None:intergenic | 30.0% | |
TCGTTGTAGATAATTAGACA+TGG | - | chr4.1:48043533-48043552 | None:intergenic | 30.0% | |
TGTAGTCAATAATTGTGATG+TGG | + | chr4.1:48041912-48041931 | MS.gene61602:intron | 30.0% | |
TGTTATCATCTCTTTGAATC+TGG | - | chr4.1:48041354-48041373 | None:intergenic | 30.0% | |
TTTCATATCTTGTGCTCTTA+GGG | + | chr4.1:48044846-48044865 | MS.gene61602:intron | 30.0% | |
! | AAAGCAACTGACTTAAATTC+AGG | - | chr4.1:48044888-48044907 | None:intergenic | 30.0% |
! | AAGATTTAGCCACGAAATTT+TGG | - | chr4.1:48043363-48043382 | None:intergenic | 30.0% |
! | AAGCAACTGACTTAAATTCA+GGG | - | chr4.1:48044887-48044906 | None:intergenic | 30.0% |
! | CCAATTTGATGTTGTTTAAG+GGG | - | chr4.1:48043280-48043299 | None:intergenic | 30.0% |
! | GTGAATTTGAGTTTGAACTT+AGG | + | chr4.1:48041646-48041665 | MS.gene61602:intron | 30.0% |
! | TTCATTTTCGCTTCAACTAA+TGG | - | chr4.1:48042216-48042235 | None:intergenic | 30.0% |
!! | AAAAATGATGGATGAACGAA+AGG | - | chr4.1:48044500-48044519 | None:intergenic | 30.0% |
!!! | TGTATTTTGATGAGAATGTG+CGG | - | chr4.1:48043151-48043170 | None:intergenic | 30.0% |
AAACATGAAGTAATCAGGCA+TGG | + | chr4.1:48042243-48042262 | MS.gene61602:intron | 35.0% | |
AAGGTAATTATTGTCGGTAG+AGG | + | chr4.1:48043985-48044004 | MS.gene61602:intron | 35.0% | |
AATCAATAGGAGGAAGAACA+TGG | + | chr4.1:48045125-48045144 | MS.gene61602:CDS | 35.0% | |
AATCCTTCGCAAATTAGCTA+TGG | - | chr4.1:48041985-48042004 | None:intergenic | 35.0% | |
ACAATCATTGTTGTCGATAG+CGG | - | chr4.1:48042075-48042094 | None:intergenic | 35.0% | |
ACATGAGCTGTCTCTTAAAA+GGG | + | chr4.1:48044591-48044610 | MS.gene61602:intron | 35.0% | |
AGAAAACAAAACACGGTTAG+AGG | - | chr4.1:48044924-48044943 | None:intergenic | 35.0% | |
AGAGAAGTCACACAAACAAT+AGG | - | chr4.1:48043470-48043489 | None:intergenic | 35.0% | |
AGGCTTCAAATTCATTAGGT+AGG | - | chr4.1:48043636-48043655 | None:intergenic | 35.0% | |
AGGTAATTATTGTCGGTAGA+GGG | + | chr4.1:48043986-48044005 | MS.gene61602:intron | 35.0% | |
ATCAATAGGAGGAAGAACAT+GGG | + | chr4.1:48045126-48045145 | MS.gene61602:CDS | 35.0% | |
ATTTGCATGCAGCTTAAATG+TGG | + | chr4.1:48041717-48041736 | MS.gene61602:intron | 35.0% | |
CATTGCTGTAAATGTATTGC+TGG | - | chr4.1:48043925-48043944 | None:intergenic | 35.0% | |
CCCCTTAAACAACATCAAAT+TGG | + | chr4.1:48043277-48043296 | MS.gene61602:intron | 35.0% | |
CTTATCCCAGAGTAAGAAAA+TGG | + | chr4.1:48042471-48042490 | MS.gene61602:intron | 35.0% | |
GACAACAATGATTGTGATAG+AGG | + | chr4.1:48042080-48042099 | MS.gene61602:intron | 35.0% | |
GCAGTGACATATGCTATATT+TGG | + | chr4.1:48042524-48042543 | MS.gene61602:intron | 35.0% | |
GTTGAGAAAACCTATTTCCA+TGG | + | chr4.1:48043299-48043318 | MS.gene61602:intron | 35.0% | |
GTTTCATATCTTGTGCTCTT+AGG | + | chr4.1:48044845-48044864 | MS.gene61602:intron | 35.0% | |
TCCATGGAGAATGTAGAATA+GGG | + | chr4.1:48043315-48043334 | MS.gene61602:intron | 35.0% | |
TCTACATTCTCCATGGAAAT+AGG | - | chr4.1:48043312-48043331 | None:intergenic | 35.0% | |
TCTCTGTTAATGAAGCTAGT+AGG | + | chr4.1:48043681-48043700 | MS.gene61602:intron | 35.0% | |
TGAGTGCACATTAATCTATG+AGG | - | chr4.1:48044051-48044070 | None:intergenic | 35.0% | |
TTCAGAGAAAGGATTGTTGA+AGG | - | chr4.1:48043221-48043240 | None:intergenic | 35.0% | |
TTCCATGGAGAATGTAGAAT+AGG | + | chr4.1:48043314-48043333 | MS.gene61602:intron | 35.0% | |
! | AATCTGGATTTTGCTGAAAG+GGG | - | chr4.1:48041338-48041357 | None:intergenic | 35.0% |
! | ATTTGATGGATGGTCTTGAT+TGG | + | chr4.1:48042624-48042643 | MS.gene61602:CDS | 35.0% |
! | GAATCTGGATTTTGCTGAAA+GGG | - | chr4.1:48041339-48041358 | None:intergenic | 35.0% |
! | GGGAATCAATTTTCAGAGAA+AGG | - | chr4.1:48043232-48043251 | None:intergenic | 35.0% |
! | TAGCACCATTTTCTTACTCT+GGG | - | chr4.1:48042479-48042498 | None:intergenic | 35.0% |
! | TATGTTTTGCTTGGTAAGGA+GGG | - | chr4.1:48044547-48044566 | None:intergenic | 35.0% |
! | TGAATCTGGATTTTGCTGAA+AGG | - | chr4.1:48041340-48041359 | None:intergenic | 35.0% |
! | TGAGGTTTTGCTTATTTGAG+TGG | - | chr4.1:48044675-48044694 | None:intergenic | 35.0% |
! | TGTGTTTATATGGCGGAATA+TGG | + | chr4.1:48042036-48042055 | MS.gene61602:intron | 35.0% |
!! | AGCTTTGAGATGATCACAAA+AGG | - | chr4.1:48043602-48043621 | None:intergenic | 35.0% |
!! | CATATTTTGAGTGACAACAC+AGG | + | chr4.1:48043440-48043459 | MS.gene61602:intron | 35.0% |
!! | GGATAAGAGCTTTAAATCCA+CGG | - | chr4.1:48042458-48042477 | None:intergenic | 35.0% |
!! | TATCTTTCATTTTGACAGGC+TGG | + | chr4.1:48044177-48044196 | MS.gene61602:intron | 35.0% |
!! | TGATGTGGAGTGTTGTTAAA+TGG | + | chr4.1:48041927-48041946 | MS.gene61602:intron | 35.0% |
!! | TTTTAAGAGACAGCTCATGT+CGG | - | chr4.1:48044591-48044610 | None:intergenic | 35.0% |
!!! | GTATTTTGATGAGAATGTGC+GGG | - | chr4.1:48043150-48043169 | None:intergenic | 35.0% |
!!! | GTTTTGACTTTGATTTGGGA+TGG | + | chr4.1:48041487-48041506 | MS.gene61602:intron | 35.0% |
!!! | TGTTGGCTTTTCAGATGTTA+CGG | + | chr4.1:48044365-48044384 | MS.gene61602:CDS | 35.0% |
AAAACTCTAGGCATTCAAGG+TGG | - | chr4.1:48044651-48044670 | None:intergenic | 40.0% | |
AAACTCTAGGCATTCAAGGT+GGG | - | chr4.1:48044650-48044669 | None:intergenic | 40.0% | |
ACAGTCATGCATTCATGAAC+AGG | + | chr4.1:48045091-48045110 | MS.gene61602:CDS | 40.0% | |
ACATTCATGCTTCAGTTGAC+TGG | + | chr4.1:48042663-48042682 | MS.gene61602:CDS | 40.0% | |
ACATTTGATGCGTACGTCAT+TGG | + | chr4.1:48042339-48042358 | MS.gene61602:CDS | 40.0% | |
ACTGAAGCTTCATCTTCATC+AGG | - | chr4.1:48045156-48045175 | None:intergenic | 40.0% | |
AGATGATCACAAAAGGAGAC+TGG | - | chr4.1:48043595-48043614 | None:intergenic | 40.0% | |
AGGATTGTTGAAGGTTGTCA+AGG | - | chr4.1:48043212-48043231 | None:intergenic | 40.0% | |
AGTCTGTATAGAGGAAAGGT+TGG | + | chr4.1:48042578-48042597 | MS.gene61602:intron | 40.0% | |
ATGGCGGTTGTCAAAAAATC+TGG | - | chr4.1:48041966-48041985 | None:intergenic | 40.0% | |
CAACTGAAGGAATCAATAGG+AGG | + | chr4.1:48045115-48045134 | MS.gene61602:CDS | 40.0% | |
CATCTCAAAGCTGTACACAA+TGG | + | chr4.1:48043610-48043629 | MS.gene61602:intron | 40.0% | |
CGTGGCTAAATCTTCAAACA+CGG | + | chr4.1:48043369-48043388 | MS.gene61602:intron | 40.0% | |
CTCTGCTTCTTTCATCATCA+TGG | + | chr4.1:48041382-48041401 | MS.gene61602:intron | 40.0% | |
GAAAACGGTGTGCGAAATAT+TGG | + | chr4.1:48042172-48042191 | MS.gene61602:intron | 40.0% | |
GAAGTCACACAAACAATAGG+AGG | - | chr4.1:48043467-48043486 | None:intergenic | 40.0% | |
GACATGAGCTGTCTCTTAAA+AGG | + | chr4.1:48044590-48044609 | MS.gene61602:intron | 40.0% | |
GATCACAATCCTCTTCAGAA+AGG | - | chr4.1:48043402-48043421 | None:intergenic | 40.0% | |
GATGCTGTTGTAGCTTTCTA+TGG | + | chr4.1:48044264-48044283 | MS.gene61602:CDS | 40.0% | |
GATTCTGAGCAAAGTGATCA+AGG | - | chr4.1:48043656-48043675 | None:intergenic | 40.0% | |
GCTGCTATGATTTCTCAACT+TGG | + | chr4.1:48042432-48042451 | MS.gene61602:CDS | 40.0% | |
GGTAAAACTCTAGGCATTCA+AGG | - | chr4.1:48044654-48044673 | None:intergenic | 40.0% | |
GGTCAACTGAAGGAATCAAT+AGG | + | chr4.1:48045112-48045131 | MS.gene61602:CDS | 40.0% | |
GGTGTAACTGGATTCTGTAT+GGG | + | chr4.1:48044198-48044217 | MS.gene61602:CDS | 40.0% | |
GTGTAACTGGATTCTGTATG+GGG | + | chr4.1:48044199-48044218 | MS.gene61602:CDS | 40.0% | |
TAAACACACCAATGCAGCTA+TGG | - | chr4.1:48042024-48042043 | None:intergenic | 40.0% | |
TCCATTGCAGGTAGAAAACA+TGG | - | chr4.1:48042272-48042291 | None:intergenic | 40.0% | |
TCCCTATTCTACATTCTCCA+TGG | - | chr4.1:48043319-48043338 | None:intergenic | 40.0% | |
TCTATACAGACTGCGGAAAA+TGG | - | chr4.1:48042570-48042589 | None:intergenic | 40.0% | |
TGGTGTAACTGGATTCTGTA+TGG | + | chr4.1:48044197-48044216 | MS.gene61602:CDS | 40.0% | |
TGTAACTGGATTCTGTATGG+GGG | + | chr4.1:48044200-48044219 | MS.gene61602:CDS | 40.0% | |
TTCATGAACAGGTCAACTGA+AGG | + | chr4.1:48045102-48045121 | MS.gene61602:CDS | 40.0% | |
TTGAAGGTTGTCAAGGTAAC+AGG | - | chr4.1:48043205-48043224 | None:intergenic | 40.0% | |
TTTAAGAGACAGCTCATGTC+GGG | - | chr4.1:48044590-48044609 | None:intergenic | 40.0% | |
! | ATGTTTTGCTTGGTAAGGAG+GGG | - | chr4.1:48044546-48044565 | None:intergenic | 40.0% |
! | ATTTTCCGCAGTCTGTATAG+AGG | + | chr4.1:48042569-48042588 | MS.gene61602:intron | 40.0% |
! | CATTGATTGATGTCTCATGC+AGG | + | chr4.1:48044999-48045018 | MS.gene61602:intron | 40.0% |
! | GCATTGGTGTGTTTATATGG+CGG | + | chr4.1:48042029-48042048 | MS.gene61602:intron | 40.0% |
! | GCTGCATTGGTGTGTTTATA+TGG | + | chr4.1:48042026-48042045 | MS.gene61602:intron | 40.0% |
! | GTAGCACCATTTTCTTACTC+TGG | - | chr4.1:48042480-48042499 | None:intergenic | 40.0% |
! | GTATGTTTTGCTTGGTAAGG+AGG | - | chr4.1:48044548-48044567 | None:intergenic | 40.0% |
! | TCCATGTTTTCTACCTGCAA+TGG | + | chr4.1:48042268-48042287 | MS.gene61602:intron | 40.0% |
!! | GTTGACTGGCTTAAAGCAAA+TGG | + | chr4.1:48042677-48042696 | MS.gene61602:CDS | 40.0% |
!! | TGTGGAGTGTTGTTAAATGG+CGG | + | chr4.1:48041930-48041949 | MS.gene61602:intron | 40.0% |
AAAGGGAACGTGCACACATT+CGG | + | chr4.1:48044608-48044627 | MS.gene61602:intron | 45.0% | |
AACTCTAGGCATTCAAGGTG+GGG | - | chr4.1:48044649-48044668 | None:intergenic | 45.0% | |
AGACATGGTCTGTAAACCCT+TGG | - | chr4.1:48043518-48043537 | None:intergenic | 45.0% | |
AGTACTGTGTCATCCACGAT+TGG | - | chr4.1:48045200-48045219 | None:intergenic | 45.0% | |
ATGAATGCATGACTGTTGCC+AGG | - | chr4.1:48045087-48045106 | None:intergenic | 45.0% | |
ATGATTTCTCAACTTGGCCG+TGG | + | chr4.1:48042438-48042457 | MS.gene61602:CDS | 45.0% | |
ATTATTGTCGGTAGAGGGCA+TGG | + | chr4.1:48043991-48044010 | MS.gene61602:intron | 45.0% | |
CAGCAATGAAGTTCCATTGC+AGG | - | chr4.1:48042284-48042303 | None:intergenic | 45.0% | |
CATGAGGTACACATATACCC+TGG | + | chr4.1:48045066-48045085 | MS.gene61602:CDS | 45.0% | |
CCTTCGCAAATTAGCTATGG+CGG | - | chr4.1:48041982-48042001 | None:intergenic | 45.0% | |
CCTTTCCTCTATACAGACTG+CGG | - | chr4.1:48042577-48042596 | None:intergenic | 45.0% | |
CGGGAAACTGGAATTGTCTT+GGG | - | chr4.1:48044571-48044590 | None:intergenic | 45.0% | |
GAAGCACAGCATTTGATGGA+TGG | + | chr4.1:48042614-48042633 | MS.gene61602:CDS | 45.0% | |
GAGAGGCTTCGAATCTAAGA+GGG | - | chr4.1:48043496-48043515 | None:intergenic | 45.0% | |
GCTACAACAGCATCAACATG+TGG | - | chr4.1:48044258-48044277 | None:intergenic | 45.0% | |
GGGAAACTGGAATTGTCTTG+GGG | - | chr4.1:48044570-48044589 | None:intergenic | 45.0% | |
GGGTATATGTGTACCTCATG+TGG | - | chr4.1:48045066-48045085 | None:intergenic | 45.0% | |
GTAACTGGATTCTGTATGGG+GGG | + | chr4.1:48044201-48044220 | MS.gene61602:CDS | 45.0% | |
TAGATTCGAAGCCTCTCCAA+GGG | + | chr4.1:48043499-48043518 | MS.gene61602:intron | 45.0% | |
TCGGGAAACTGGAATTGTCT+TGG | - | chr4.1:48044572-48044591 | None:intergenic | 45.0% | |
TGAATGCATGACTGTTGCCA+GGG | - | chr4.1:48045086-48045105 | None:intergenic | 45.0% | |
TGCAATTGCAAGCTCTGTCT+TGG | + | chr4.1:48044230-48044249 | MS.gene61602:CDS | 45.0% | |
TTAGATTCGAAGCCTCTCCA+AGG | + | chr4.1:48043498-48043517 | MS.gene61602:intron | 45.0% | |
! | GGAGAGCTGGACAATTTTGT+TGG | + | chr4.1:48044348-48044367 | MS.gene61602:CDS | 45.0% |
! | GGCACATTTCCTTTCTGAAG+AGG | + | chr4.1:48043390-48043409 | MS.gene61602:intron | 45.0% |
! | GGGGTATGTTTTGCTTGGTA+AGG | - | chr4.1:48044551-48044570 | None:intergenic | 45.0% |
! | GTATAGAGGAAAGGTTGGTC+TGG | + | chr4.1:48042583-48042602 | MS.gene61602:CDS | 45.0% |
! | GTCTTGGGGTATGTTTTGCT+TGG | - | chr4.1:48044556-48044575 | None:intergenic | 45.0% |
! | GTGTTGTTAAATGGCGGTCA+TGG | + | chr4.1:48041936-48041955 | MS.gene61602:intron | 45.0% |
! | TGCAGAAGCACAGCATTTGA+TGG | + | chr4.1:48042610-48042629 | MS.gene61602:CDS | 45.0% |
! | TGTTTTGCTTGGTAAGGAGG+GGG | - | chr4.1:48044545-48044564 | None:intergenic | 45.0% |
! | TTATTGTCGGTAGAGGGCAT+GGG | + | chr4.1:48043992-48044011 | MS.gene61602:intron | 45.0% |
! | TTTTGACAGGCTGGTGTAAC+TGG | + | chr4.1:48044186-48044205 | MS.gene61602:intron | 45.0% |
!! | TCGATAGCGGACTATGGAAA+AGG | - | chr4.1:48042062-48042081 | None:intergenic | 45.0% |
!! | TTGTTGTCGATAGCGGACTA+TGG | - | chr4.1:48042068-48042087 | None:intergenic | 45.0% |
AAGCTTCAGTTCAGCTCGCA+TGG | + | chr4.1:48045166-48045185 | MS.gene61602:CDS | 50.0% | |
AAGGGAACGTGCACACATTC+GGG | + | chr4.1:48044609-48044628 | MS.gene61602:intron | 50.0% | |
CAACTTCTCCTCCAAAGCCT+TGG | - | chr4.1:48045028-48045047 | None:intergenic | 50.0% | |
CCGCAGTCTGTATAGAGGAA+AGG | + | chr4.1:48042574-48042593 | MS.gene61602:intron | 50.0% | |
GAATTGTAGTGCTCCAGGAG+TGG | + | chr4.1:48042379-48042398 | MS.gene61602:CDS | 50.0% | |
GGAGAGGCTTCGAATCTAAG+AGG | - | chr4.1:48043497-48043516 | None:intergenic | 50.0% | |
GGGTCTGCAAGTTCAGAAGA+AGG | - | chr4.1:48044294-48044313 | None:intergenic | 50.0% | |
TCCTGGAATTGTAGTGCTCC+AGG | + | chr4.1:48042374-48042393 | MS.gene61602:CDS | 50.0% | |
TCTCCAAAGTGAGCCTGAAC+AGG | - | chr4.1:48044333-48044352 | None:intergenic | 50.0% | |
TGAATGTCCTTCACAGCACC+TGG | - | chr4.1:48042650-48042669 | None:intergenic | 50.0% | |
TGGTCTGTAAACCCTTGGAG+AGG | - | chr4.1:48043513-48043532 | None:intergenic | 50.0% | |
! | ATGGATGGTCTTGATTGGCC+AGG | + | chr4.1:48042629-48042648 | MS.gene61602:CDS | 50.0% |
! | CCGCCATAGCTAATTTGCGA+AGG | + | chr4.1:48041979-48041998 | MS.gene61602:intron | 50.0% |
! | GGCATCTGGAATTCCACATG+AGG | + | chr4.1:48045050-48045069 | MS.gene61602:CDS | 50.0% |
! | TCCTGGAGCACTACAATTCC+AGG | - | chr4.1:48042378-48042397 | None:intergenic | 50.0% |
! | TGCGTTCTAGATCGTTCTCG+TGG | + | chr4.1:48042915-48042934 | MS.gene61602:intron | 50.0% |
!! | GAGGAGAAGTTGAAGGCATC+TGG | + | chr4.1:48045036-48045055 | MS.gene61602:CDS | 50.0% |
!! | GGCTTTGGAGGAGAAGTTGA+AGG | + | chr4.1:48045029-48045048 | MS.gene61602:CDS | 50.0% |
AACGTGCACACATTCGGGGA+GGG | + | chr4.1:48044614-48044633 | MS.gene61602:intron | 55.0% | |
AGGGAACGTGCACACATTCG+GGG | + | chr4.1:48044610-48044629 | MS.gene61602:intron | 55.0% | |
ATGTCTCATGCAGGCTGCCA+AGG | + | chr4.1:48045008-48045027 | MS.gene61602:intron | 55.0% | |
ATTGGCAAGCACGATGCTCC+TGG | + | chr4.1:48042357-48042376 | MS.gene61602:CDS | 55.0% | |
GACAGCTCATGTCGGGAAAC+TGG | - | chr4.1:48044583-48044602 | None:intergenic | 55.0% | |
GCTCCTGTTCAGGCTCACTT+TGG | + | chr4.1:48044327-48044346 | MS.gene61602:CDS | 55.0% | |
TCAAGCCAAGGCTCCTGTTC+AGG | + | chr4.1:48044317-48044336 | MS.gene61602:CDS | 55.0% | |
TGTAGTGCTCCAGGAGTGGT+GGG | + | chr4.1:48042383-48042402 | MS.gene61602:CDS | 55.0% | |
TTGCGAAGGATTGCCGACCA+TGG | + | chr4.1:48041993-48042012 | MS.gene61602:intron | 55.0% | |
TTGTAGTGCTCCAGGAGTGG+TGG | + | chr4.1:48042382-48042401 | MS.gene61602:CDS | 55.0% | |
! | TCAGGCTCACTTTGGAGAGC+TGG | + | chr4.1:48044335-48044354 | MS.gene61602:CDS | 55.0% |
! | TGATTGGCCAGGTGCTGTGA+AGG | + | chr4.1:48042640-48042659 | MS.gene61602:CDS | 55.0% |
AATCCACACCCCACCACTCC+TGG | - | chr4.1:48042395-48042414 | None:intergenic | 60.0% | |
CAGTTCAGCTCGCATGGTCG+CGG | + | chr4.1:48045172-48045191 | MS.gene61602:CDS | 60.0% | |
CATGCAGGCTGCCAAGGCTT+TGG | + | chr4.1:48045014-48045033 | MS.gene61602:intron | 60.0% | |
CATGGTCGCGGTTCCAATCG+TGG | + | chr4.1:48045184-48045203 | MS.gene61602:CDS | 60.0% | |
CGAAGGATTGCCGACCATGG+CGG | + | chr4.1:48041996-48042015 | MS.gene61602:intron | 60.0% | |
GAACGTGCACACATTCGGGG+AGG | + | chr4.1:48044613-48044632 | MS.gene61602:intron | 60.0% | |
GTAGTGCTCCAGGAGTGGTG+GGG | + | chr4.1:48042384-48042403 | MS.gene61602:CDS | 60.0% | |
GTGAGCCTGAACAGGAGCCT+TGG | - | chr4.1:48044325-48044344 | None:intergenic | 60.0% | |
TGCAGACCCTGCTCAAGCCA+AGG | + | chr4.1:48044305-48044324 | MS.gene61602:CDS | 60.0% | |
TGGCGGCACCATAGCTGCAT+TGG | + | chr4.1:48042013-48042032 | MS.gene61602:intron | 60.0% | |
! | ACAGGAGCCTTGGCTTGAGC+AGG | - | chr4.1:48044315-48044334 | None:intergenic | 60.0% |
! | CAGGAGCCTTGGCTTGAGCA+GGG | - | chr4.1:48044314-48044333 | None:intergenic | 60.0% |
!! | AGCTATGGTGCCGCCATGGT+CGG | - | chr4.1:48042009-48042028 | None:intergenic | 60.0% |
!! | ATGCAGCTATGGTGCCGCCA+TGG | - | chr4.1:48042013-48042032 | None:intergenic | 60.0% |
! | GCAGGCTGCCAAGGCTTTGG+AGG | + | chr4.1:48045017-48045036 | MS.gene61602:intron | 65.0% |
! | GCTCCAGGAGTGGTGGGGTG+TGG | + | chr4.1:48042389-48042408 | MS.gene61602:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 48041319 | 48045230 | 48041319 | ID=MS.gene61602 |
chr4.1 | mRNA | 48041319 | 48045230 | 48041319 | ID=MS.gene61602.t1;Parent=MS.gene61602 |
chr4.1 | exon | 48041319 | 48041375 | 48041319 | ID=MS.gene61602.t1.exon1;Parent=MS.gene61602.t1 |
chr4.1 | CDS | 48041319 | 48041375 | 48041319 | ID=cds.MS.gene61602.t1;Parent=MS.gene61602.t1 |
chr4.1 | exon | 48042339 | 48042481 | 48042339 | ID=MS.gene61602.t1.exon2;Parent=MS.gene61602.t1 |
chr4.1 | CDS | 48042339 | 48042481 | 48042339 | ID=cds.MS.gene61602.t1;Parent=MS.gene61602.t1 |
chr4.1 | exon | 48042580 | 48042709 | 48042580 | ID=MS.gene61602.t1.exon3;Parent=MS.gene61602.t1 |
chr4.1 | CDS | 48042580 | 48042709 | 48042580 | ID=cds.MS.gene61602.t1;Parent=MS.gene61602.t1 |
chr4.1 | exon | 48044195 | 48044386 | 48044195 | ID=MS.gene61602.t1.exon4;Parent=MS.gene61602.t1 |
chr4.1 | CDS | 48044195 | 48044386 | 48044195 | ID=cds.MS.gene61602.t1;Parent=MS.gene61602.t1 |
chr4.1 | exon | 48045021 | 48045230 | 48045021 | ID=MS.gene61602.t1.exon5;Parent=MS.gene61602.t1 |
chr4.1 | CDS | 48045021 | 48045230 | 48045021 | ID=cds.MS.gene61602.t1;Parent=MS.gene61602.t1 |
Gene Sequence |
Protein sequence |