Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037710.t1 | XP_013454961.1 | 98.3 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.00E+00 | 1431.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037710.t1 | O04015 | 79.5 | 709 | 145 | 0 | 44 | 752 | 4 | 712 | 0.0e+00 | 1097.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037710.t1 | G8IJI0 | 98.3 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.0e+00 | 1431.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene037710 | MS.gene73119 | PPI |
| MS.gene037710 | MS.gene99360 | PPI |
| MS.gene037710 | MS.gene66800 | PPI |
| MS.gene037710 | MS.gene03802 | PPI |
| MS.gene037710 | MS.gene035805 | PPI |
| MS.gene037710 | MS.gene064542 | PPI |
| MS.gene037710 | MS.gene78111 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037710.t1 | MTR_4g020110 | 98.283 | 757 | 12 | 1 | 1 | 757 | 1 | 756 | 0.0 | 1514 |
| MS.gene037710.t1 | MTR_4g020110 | 97.766 | 761 | 12 | 2 | 1 | 757 | 1 | 760 | 0.0 | 1508 |
| MS.gene037710.t1 | MTR_4g020110 | 98.100 | 737 | 11 | 2 | 1 | 737 | 1 | 734 | 0.0 | 1464 |
| MS.gene037710.t1 | MTR_4g020110 | 97.759 | 714 | 15 | 1 | 44 | 757 | 1 | 713 | 0.0 | 1421 |
| MS.gene037710.t1 | MTR_4g020110 | 98.487 | 661 | 9 | 1 | 1 | 661 | 1 | 660 | 0.0 | 1320 |
| MS.gene037710.t1 | MTR_7g063650 | 84.314 | 714 | 112 | 0 | 44 | 757 | 1 | 714 | 0.0 | 1226 |
| MS.gene037710.t1 | MTR_3g069080 | 75.983 | 712 | 171 | 0 | 41 | 752 | 1 | 712 | 0.0 | 1093 |
| MS.gene037710.t1 | MTR_4g095062 | 57.426 | 101 | 38 | 3 | 606 | 704 | 233 | 330 | 1.27e-25 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037710.t1 | AT3G55610 | 74.719 | 712 | 180 | 0 | 41 | 752 | 1 | 712 | 0.0 | 1083 |
| MS.gene037710.t1 | AT2G39800 | 75.035 | 717 | 179 | 0 | 41 | 757 | 1 | 717 | 0.0 | 1079 |
| MS.gene037710.t1 | AT2G39800 | 75.035 | 717 | 179 | 0 | 41 | 757 | 1 | 717 | 0.0 | 1079 |
| MS.gene037710.t1 | AT2G39800 | 74.616 | 717 | 179 | 1 | 41 | 757 | 1 | 714 | 0.0 | 1066 |
| MS.gene037710.t1 | AT2G39800 | 74.756 | 614 | 155 | 0 | 144 | 757 | 1 | 614 | 0.0 | 920 |
| MS.gene037710.t1 | AT3G55610 | 73.269 | 621 | 166 | 0 | 41 | 661 | 1 | 621 | 0.0 | 919 |
Find 171 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAGCATAATCGTATTT+TGG | 0.184262 | 4.3:+78260461 | None:intergenic |
| GGGAATGGCTTATTACTTAA+AGG | 0.220041 | 4.3:-78259351 | MS.gene037710:CDS |
| TTCTTGCCTTCTCAGGCTTC+AGG | 0.229467 | 4.3:+78260374 | None:intergenic |
| GCTAATTACCATTGCATTGC+AGG | 0.236335 | 4.3:+78258747 | None:intergenic |
| CATCAAAGAGAAATTACTTT+TGG | 0.238637 | 4.3:-78261626 | MS.gene037710:CDS |
| TTTGGTGATGGTGGCAAATT+TGG | 0.260202 | 4.3:+78269425 | None:intergenic |
| ACAGTCAGTGGCAAACTTAT+TGG | 0.261768 | 4.3:-78259157 | MS.gene037710:CDS |
| TACGATTATGCTTGAAAATC+AGG | 0.302996 | 4.3:-78260455 | MS.gene037710:CDS |
| GGAGAAAATATCATGTCCTT+TGG | 0.320472 | 4.3:-78259640 | MS.gene037710:CDS |
| TCAAGGCTATGAAGTTATAT+TGG | 0.328978 | 4.3:-78263129 | MS.gene037710:CDS |
| CAGTCAGTGGCAAACTTATT+GGG | 0.332216 | 4.3:-78259156 | MS.gene037710:CDS |
| TTTAGCACGGCACTAGCTTT+TGG | 0.332476 | 4.3:+78258243 | None:intergenic |
| ACTTCAGGTGCTGTTGGTCT+TGG | 0.332977 | 4.3:-78263104 | MS.gene037710:CDS |
| GCTAGCTGATGAACTCGTTT+TGG | 0.333385 | 4.3:-78259661 | MS.gene037710:CDS |
| AGATGGCAAAGCAGATAGTT+AGG | 0.336883 | 4.3:-78258795 | MS.gene037710:CDS |
| ATATTTACCTTTAGTAGATC+TGG | 0.342433 | 4.3:+78259109 | None:intergenic |
| GTAAGACCGCATTTGATCTT+CGG | 0.344839 | 4.3:+78259316 | None:intergenic |
| GCTGTTTGTGCTGCTCATGC+TGG | 0.345250 | 4.3:-78261554 | MS.gene037710:CDS |
| CACTGCCTGCAGGATTCTTC+TGG | 0.349022 | 4.3:-78261800 | MS.gene037710:intron |
| TAAGACCGCATTTGATCTTC+GGG | 0.350517 | 4.3:+78259317 | None:intergenic |
| AGTTTGCCACTGACTGTATC+TGG | 0.350718 | 4.3:+78259163 | None:intergenic |
| GAAGTTATATTGGTGACTTC+AGG | 0.351606 | 4.3:-78263119 | MS.gene037710:CDS |
| CTCTTCAAAATCTGACCAAT+TGG | 0.353373 | 4.3:+78260145 | None:intergenic |
| TTAGTAAGGGGTACCTCAAT+AGG | 0.354075 | 4.3:+78269402 | None:intergenic |
| GTGCTTCAAGGGGAGAAAAT+AGG | 0.364668 | 4.3:-78260989 | MS.gene037710:CDS |
| GCCTTCCATGTTTATTTATG+TGG | 0.369341 | 4.3:+78258133 | None:intergenic |
| AAGACTTCGATACCGCAAAT+TGG | 0.377344 | 4.3:-78263075 | MS.gene037710:CDS |
| TCGCAGCACGTAACAGTTCC+AGG | 0.377443 | 4.3:-78260898 | MS.gene037710:CDS |
| GAGAAAATATCATGTCCTTT+GGG | 0.383223 | 4.3:-78259639 | MS.gene037710:CDS |
| ACCTGCTATTTGCCAATTTG+CGG | 0.383241 | 4.3:+78263063 | None:intergenic |
| TTCATAGAGATGCACATCTA+TGG | 0.384701 | 4.3:-78260958 | MS.gene037710:CDS |
| GATGGAGCACGCTTTGGACT+AGG | 0.385831 | 4.3:-78256922 | MS.gene037710:CDS |
| AAAGGTCAGCTTTAAGTTCA+AGG | 0.387629 | 4.3:+78261738 | None:intergenic |
| CTTGCAGGTGTTCAAATATA+TGG | 0.392654 | 4.3:-78258270 | MS.gene037710:intron |
| ATTTAAGTTCTTGCCTTCTC+AGG | 0.397732 | 4.3:+78260367 | None:intergenic |
| CATCACTTAATAAAACTAAA+AGG | 0.399701 | 4.3:+78261720 | None:intergenic |
| AAATACCTAGTTATAACAAC+AGG | 0.400007 | 4.3:+78261527 | None:intergenic |
| TCGACCTGATGCTCTTGTTC+AGG | 0.404694 | 4.3:-78259592 | MS.gene037710:intron |
| TTATTCCATTACCATTAGTA+AGG | 0.405027 | 4.3:+78269388 | None:intergenic |
| TGTGCGTGTGCTGGCAGATA+TGG | 0.405412 | 4.3:-78260173 | MS.gene037710:CDS |
| GTTGCTGATGCTGTGGCAGC+TGG | 0.405518 | 4.3:-78260427 | MS.gene037710:CDS |
| AACCTTCACGTTGGAGTTCA+AGG | 0.410020 | 4.3:+78258533 | None:intergenic |
| GGTTAAGCGTTTGATTGTTA+AGG | 0.411046 | 4.3:-78269292 | MS.gene037710:intron |
| TCTTGCCTTCTCAGGCTTCA+GGG | 0.415137 | 4.3:+78260375 | None:intergenic |
| TGTTGGGCAGAGTAGTCTTA+TGG | 0.415769 | 4.3:-78262502 | MS.gene037710:CDS |
| CTTAAAGAACTAAACCTTCA+AGG | 0.416020 | 4.3:-78263146 | MS.gene037710:CDS |
| TGCAAAGTCTGTGCGTGTGC+TGG | 0.419836 | 4.3:-78260182 | MS.gene037710:CDS |
| TCAACAAGAATCCCTGTTCT+TGG | 0.420756 | 4.3:-78258950 | MS.gene037710:CDS |
| CACTTGGAGGACCACTATAA+AGG | 0.426951 | 4.3:+78261690 | None:intergenic |
| TAACAGTTCCAGGAGACTTC+AGG | 0.432633 | 4.3:-78260888 | MS.gene037710:intron |
| ATATAACTTCATAGCCTTGA+AGG | 0.434655 | 4.3:+78263132 | None:intergenic |
| CAGTTTCAGTAATCAAGTTA+AGG | 0.435092 | 4.3:+78269358 | None:intergenic |
| AAGCCACAAGGTGACCTTGA+TGG | 0.435398 | 4.3:-78262540 | MS.gene037710:CDS |
| ATGTTTATTTATGTGGTCAA+TGG | 0.439253 | 4.3:+78258140 | None:intergenic |
| TCACAACTTCTAGTGAATGA+TGG | 0.439982 | 4.3:-78262343 | MS.gene037710:CDS |
| ACCATTGCATTGCAGGCTGC+AGG | 0.440216 | 4.3:+78258754 | None:intergenic |
| TAAGCTTGTTTCTCAAATCA+AGG | 0.441036 | 4.3:-78258975 | MS.gene037710:CDS |
| AGATTAGCACTGGGCAGACT+TGG | 0.441937 | 4.3:-78263506 | MS.gene037710:CDS |
| GTCGAGACTCAAATATAATC+AGG | 0.443464 | 4.3:+78259610 | None:intergenic |
| TGGGACAATGACAGTTTGGC+TGG | 0.444164 | 4.3:-78261770 | MS.gene037710:CDS |
| TTGTTGACAAAGGCTCTTGA+AGG | 0.450746 | 4.3:+78269315 | None:intergenic |
| AAGCCCTAGAATACCTCATA+TGG | 0.455473 | 4.3:+78262205 | None:intergenic |
| AGAAAGGAGGAAAATATTGC+TGG | 0.458916 | 4.3:-78260509 | MS.gene037710:CDS |
| TAACTTGATTACTGAAACTG+AGG | 0.463346 | 4.3:-78269355 | MS.gene037710:CDS |
| AACAATCCCTCGACTCCTAC+AGG | 0.466514 | 4.3:+78256766 | None:intergenic |
| TTACCAGCATGACCAAGAAC+AGG | 0.466579 | 4.3:+78258938 | None:intergenic |
| AACATTATACGAGTGCTTCA+AGG | 0.470573 | 4.3:-78261001 | MS.gene037710:CDS |
| GGAAGAGAGTGCGCATGAAA+TGG | 0.473708 | 4.3:-78260924 | MS.gene037710:CDS |
| TACTAGGAAGGCACCATATG+AGG | 0.477182 | 4.3:-78262218 | MS.gene037710:intron |
| ATCCCTGTTCTTGGTCATGC+TGG | 0.477939 | 4.3:-78258941 | MS.gene037710:intron |
| AATACCTGAACAAGAGCATC+AGG | 0.478922 | 4.3:+78259588 | None:intergenic |
| TTTGGAGACAAATCAAGATT+GGG | 0.481455 | 4.3:-78261608 | MS.gene037710:CDS |
| TTATATAATGCAGGATATTG+AGG | 0.481462 | 4.3:-78256412 | MS.gene037710:intron |
| GTACCCCTTACTAATGGTAA+TGG | 0.482989 | 4.3:-78269393 | MS.gene037710:CDS |
| TTTGAGTTTGGGTCACTTGG+AGG | 0.483545 | 4.3:+78261677 | None:intergenic |
| GACAAATCAAGATTGGGCAG+AGG | 0.488517 | 4.3:-78261602 | MS.gene037710:CDS |
| CATTCTTATCTCAAGTTGAC+AGG | 0.490759 | 4.3:-78257965 | MS.gene037710:intron |
| GCCACTGACTGTATCTGGTA+TGG | 0.493767 | 4.3:+78259168 | None:intergenic |
| ATGGAGCACGCTTTGGACTA+GGG | 0.494430 | 4.3:-78256921 | MS.gene037710:CDS |
| CAAGCTTATTACTGCCTCTA+GGG | 0.494703 | 4.3:+78258990 | None:intergenic |
| AAGGGGTACCTCAATAGGTT+TGG | 0.495921 | 4.3:+78269407 | None:intergenic |
| ACCGCAAATTGGCAAATAGC+AGG | 0.496549 | 4.3:-78263064 | MS.gene037710:intron |
| ATTGAGGTACCCCTTACTAA+TGG | 0.501029 | 4.3:-78269399 | MS.gene037710:CDS |
| ACATTATACGAGTGCTTCAA+GGG | 0.504792 | 4.3:-78261000 | MS.gene037710:CDS |
| CACAACTTCTAGTGAATGAT+GGG | 0.506906 | 4.3:-78262342 | MS.gene037710:CDS |
| CACCATCACCAAACCTATTG+AGG | 0.509868 | 4.3:-78269415 | MS.gene037710:CDS |
| TATATAATGCAGGATATTGA+GGG | 0.510276 | 4.3:-78256411 | MS.gene037710:intron |
| CTCAATAGGTTTGGTGATGG+TGG | 0.515987 | 4.3:+78269416 | None:intergenic |
| TTCAAGAGCCTTTGTCAACA+AGG | 0.516226 | 4.3:-78269313 | MS.gene037710:CDS |
| TTGGCAATTCGAAGTGGGAA+TGG | 0.517957 | 4.3:-78259366 | MS.gene037710:CDS |
| AAAATGATGCTGTTAGTACT+AGG | 0.518973 | 4.3:-78262234 | MS.gene037710:CDS |
| AAGTGATGGAAGATTAGCAC+TGG | 0.519612 | 4.3:-78263516 | MS.gene037710:CDS |
| TTGGTGACTTCAGGTGCTGT+TGG | 0.521178 | 4.3:-78263110 | MS.gene037710:CDS |
| AGGGATTGTTGACAAACAAA+TGG | 0.525711 | 4.3:-78256753 | MS.gene037710:intron |
| AAGGTCAGCTTTAAGTTCAA+GGG | 0.526790 | 4.3:+78261739 | None:intergenic |
| GAAAAGCATGTGCAGCTGTT+GGG | 0.530069 | 4.3:-78262518 | MS.gene037710:CDS |
| ACAAATCAAGATTGGGCAGA+GGG | 0.530530 | 4.3:-78261601 | MS.gene037710:CDS |
| TACCTCGTTATTAGAATCGA+AGG | 0.531369 | 4.3:-78262275 | MS.gene037710:CDS |
| CTTATTACTTAAAGGAGGAA+AGG | 0.531505 | 4.3:-78259343 | MS.gene037710:CDS |
| TAATTAATAGATAGCAGCAT+TGG | 0.535006 | 4.3:-78259385 | MS.gene037710:intron |
| GATGGCAAAGCAGATAGTTA+GGG | 0.536329 | 4.3:-78258794 | MS.gene037710:CDS |
| GCTGGCAGTGGCTGATGCAT+TGG | 0.538131 | 4.3:-78260491 | MS.gene037710:CDS |
| GTATGATACTATGTTTAGCC+AGG | 0.539999 | 4.3:-78262475 | MS.gene037710:intron |
| GCAGATATGGAAGAACCAAT+TGG | 0.540903 | 4.3:-78260160 | MS.gene037710:CDS |
| ACAAGCTTATTACTGCCTCT+AGG | 0.542070 | 4.3:+78258989 | None:intergenic |
| GGCTGATGTTGCTGATGCTG+TGG | 0.549604 | 4.3:-78260434 | MS.gene037710:CDS |
| ACTTGGAGCTCTATGTGAGC+AGG | 0.551750 | 4.3:-78263489 | MS.gene037710:intron |
| TGAAATTCCAGATCTACTAA+AGG | 0.553352 | 4.3:-78259116 | MS.gene037710:intron |
| AGGCCCTAAAATCTGAAGAA+AGG | 0.554155 | 4.3:-78260525 | MS.gene037710:CDS |
| TACCTCAATAGGTTTGGTGA+TGG | 0.556432 | 4.3:+78269413 | None:intergenic |
| GCTGTTGTCACTCGAAGTGA+TGG | 0.559453 | 4.3:-78263530 | MS.gene037710:CDS |
| TATTCCATTACCATTAGTAA+GGG | 0.560138 | 4.3:+78269389 | None:intergenic |
| CGCTTCAGAAATATTTAGCA+CGG | 0.560251 | 4.3:+78258230 | None:intergenic |
| CGAGGTCCTGTAGGAGTCGA+GGG | 0.562132 | 4.3:-78256772 | MS.gene037710:CDS |
| ATCCTTGAACTCCAACGTGA+AGG | 0.565086 | 4.3:-78258535 | MS.gene037710:intron |
| GATGTTGAGGGCCTTTATAG+TGG | 0.565435 | 4.3:-78261701 | MS.gene037710:CDS |
| TTTATTTATGTGGTCAATGG+CGG | 0.570819 | 4.3:+78258143 | None:intergenic |
| TCCTGCAGCCTGCAATGCAA+TGG | 0.571728 | 4.3:-78258755 | MS.gene037710:intron |
| GCATCCCTGTTGTTATAACT+AGG | 0.572085 | 4.3:-78261532 | MS.gene037710:intron |
| GGAAAAGCATGTGCAGCTGT+TGG | 0.572419 | 4.3:-78262519 | MS.gene037710:CDS |
| CAAGTCTGCTAATATTGAGA+TGG | 0.580213 | 4.3:-78258812 | MS.gene037710:CDS |
| AACTGAGGATTTGAGCAACA+TGG | 0.583563 | 4.3:-78269340 | MS.gene037710:CDS |
| CACAAGGATCTGTCATGTAA+TGG | 0.583937 | 4.3:-78258574 | MS.gene037710:CDS |
| GGGAGTGGACAGGTAGTCGA+TGG | 0.585290 | 4.3:-78256389 | MS.gene037710:CDS |
| ATCAAATGCGGTCTTACACA+AGG | 0.591057 | 4.3:-78259310 | MS.gene037710:intron |
| AATGGCTTATTACTTAAAGG+AGG | 0.594695 | 4.3:-78259348 | MS.gene037710:CDS |
| TGATGCTGTTAGTACTAGGA+AGG | 0.595492 | 4.3:-78262230 | MS.gene037710:CDS |
| ACGCTTTGGACTAGGGGCAG+AGG | 0.595772 | 4.3:-78256914 | MS.gene037710:intron |
| TAATAACGAGGTAATTGTGT+CGG | 0.596135 | 4.3:+78262285 | None:intergenic |
| TTGCACAATTGAAATTGTAG+AGG | 0.596507 | 4.3:-78258175 | MS.gene037710:CDS |
| ACCACATAAATAAACATGGA+AGG | 0.597773 | 4.3:-78258134 | MS.gene037710:intron |
| ATTCATGCTCGAGGTCCTGT+AGG | 0.597900 | 4.3:-78256781 | MS.gene037710:CDS |
| GGAACTGTTACGTGCTGCGA+CGG | 0.598676 | 4.3:+78260901 | None:intergenic |
| AAATCAAGATTGGGCAGAGG+GGG | 0.599491 | 4.3:-78261599 | MS.gene037710:CDS |
| ACGCTTAACCTTGTTGACAA+AGG | 0.602740 | 4.3:+78269305 | None:intergenic |
| TCTGATCTTCAAAAGCCACA+AGG | 0.604032 | 4.3:-78262552 | MS.gene037710:CDS |
| TCGAGGTCCTGTAGGAGTCG+AGG | 0.610355 | 4.3:-78256773 | MS.gene037710:CDS |
| GAGGAAAATATTGCTGGCAG+TGG | 0.612236 | 4.3:-78260503 | MS.gene037710:CDS |
| TTTAACCCTGAAGCCTGAGA+AGG | 0.613809 | 4.3:-78260380 | MS.gene037710:intron |
| TGTCACAGAAGACTCTGAAG+TGG | 0.614012 | 4.3:-78257994 | MS.gene037710:CDS |
| CAGCATTGGCAATTCGAAGT+GGG | 0.617966 | 4.3:-78259371 | MS.gene037710:CDS |
| CACTCGTATAATGTTGTCTG+TGG | 0.619043 | 4.3:+78261009 | None:intergenic |
| CCCTAAAATCTGAAGAAAGG+AGG | 0.621678 | 4.3:-78260522 | MS.gene037710:CDS |
| TGGAGCACGCTTTGGACTAG+GGG | 0.622951 | 4.3:-78256920 | MS.gene037710:CDS |
| AAAACCGTGTACTTGCATTG+TGG | 0.623084 | 4.3:+78256947 | None:intergenic |
| CAGGTAGTCGATGGTGATCG+AGG | 0.623515 | 4.3:-78256380 | MS.gene037710:CDS |
| TGATGATGTGATAGATCTTG+TGG | 0.625953 | 4.3:-78259014 | MS.gene037710:CDS |
| ATTCCATTACCATTAGTAAG+GGG | 0.626101 | 4.3:+78269390 | None:intergenic |
| GGAGACTCTTCTTGTACACA+AGG | 0.627269 | 4.3:-78258590 | MS.gene037710:CDS |
| TTTCCATCAAGGTCACCTTG+TGG | 0.633965 | 4.3:+78262537 | None:intergenic |
| ATCATTCACTAGAAGTTGTG+AGG | 0.636467 | 4.3:+78262345 | None:intergenic |
| ATAGATCTTGTGGTCCCTAG+AGG | 0.639977 | 4.3:-78259004 | MS.gene037710:CDS |
| GCAGGTGTTCAAATATATGG+TGG | 0.640152 | 4.3:-78258267 | MS.gene037710:intron |
| TACCAGCATGACCAAGAACA+GGG | 0.642362 | 4.3:+78258939 | None:intergenic |
| TATTCCACAATGCAAGTACA+CGG | 0.643532 | 4.3:-78256951 | MS.gene037710:CDS |
| GCAGCATTGGCAATTCGAAG+TGG | 0.644064 | 4.3:-78259372 | MS.gene037710:CDS |
| ATTGACCACATAAATAAACA+TGG | 0.655940 | 4.3:-78258138 | MS.gene037710:CDS |
| ATATAATGCAGGATATTGAG+GGG | 0.656221 | 4.3:-78256410 | MS.gene037710:intron |
| ATAATCAGGAGGACACCCAA+AGG | 0.660018 | 4.3:+78259624 | None:intergenic |
| AAGGATCTGTCATGTAATGG+TGG | 0.660536 | 4.3:-78258571 | MS.gene037710:CDS |
| GCCATACCAGATACAGTCAG+TGG | 0.663367 | 4.3:-78259169 | MS.gene037710:CDS |
| ACAAGTCGAATTCATGCTCG+AGG | 0.666973 | 4.3:-78256790 | MS.gene037710:CDS |
| TATAATGCAGGATATTGAGG+GGG | 0.674210 | 4.3:-78256409 | MS.gene037710:intron |
| CAAATCAAGATTGGGCAGAG+GGG | 0.679854 | 4.3:-78261600 | MS.gene037710:CDS |
| GAGACTCAAATATAATCAGG+AGG | 0.682200 | 4.3:+78259613 | None:intergenic |
| AGTGATGGAAGATTAGCACT+GGG | 0.686494 | 4.3:-78263515 | MS.gene037710:CDS |
| CATTATACGAGTGCTTCAAG+GGG | 0.688933 | 4.3:-78260999 | MS.gene037710:CDS |
| GACCTTCGATTCTAATAACG+AGG | 0.691237 | 4.3:+78262273 | None:intergenic |
| GGAAGCCCGAAGATCAAATG+CGG | 0.703388 | 4.3:-78259322 | MS.gene037710:CDS |
| GTAAGGCCAAACCTTCACGT+TGG | 0.709134 | 4.3:+78258524 | None:intergenic |
| AATACCTAGTTATAACAACA+GGG | 0.742953 | 4.3:+78261528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 78256340 | 78269472 | 78256340 | ID=MS.gene037710 |
| chr4.3 | mRNA | 78256340 | 78269472 | 78256340 | ID=MS.gene037710.t1;Parent=MS.gene037710 |
| chr4.3 | exon | 78269293 | 78269472 | 78269293 | ID=MS.gene037710.t1.exon1;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78269293 | 78269472 | 78269293 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78263490 | 78263561 | 78263490 | ID=MS.gene037710.t1.exon2;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78263490 | 78263561 | 78263490 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78263065 | 78263168 | 78263065 | ID=MS.gene037710.t1.exon3;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78263065 | 78263168 | 78263065 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78262476 | 78262578 | 78262476 | ID=MS.gene037710.t1.exon4;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78262476 | 78262578 | 78262476 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78262219 | 78262380 | 78262219 | ID=MS.gene037710.t1.exon5;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78262219 | 78262380 | 78262219 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78261533 | 78261810 | 78261533 | ID=MS.gene037710.t1.exon6;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78261533 | 78261810 | 78261533 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78260889 | 78261039 | 78260889 | ID=MS.gene037710.t1.exon7;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78260889 | 78261039 | 78260889 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78260381 | 78260545 | 78260381 | ID=MS.gene037710.t1.exon8;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78260381 | 78260545 | 78260381 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78260138 | 78260215 | 78260138 | ID=MS.gene037710.t1.exon9;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78260138 | 78260215 | 78260138 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78259593 | 78259682 | 78259593 | ID=MS.gene037710.t1.exon10;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78259593 | 78259682 | 78259593 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78259311 | 78259397 | 78259311 | ID=MS.gene037710.t1.exon11;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78259311 | 78259397 | 78259311 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78259117 | 78259203 | 78259117 | ID=MS.gene037710.t1.exon12;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78259117 | 78259203 | 78259117 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78258942 | 78259038 | 78258942 | ID=MS.gene037710.t1.exon13;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78258942 | 78259038 | 78258942 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78258756 | 78258859 | 78258756 | ID=MS.gene037710.t1.exon14;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78258756 | 78258859 | 78258756 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78258536 | 78258611 | 78258536 | ID=MS.gene037710.t1.exon15;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78258536 | 78258611 | 78258536 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78258135 | 78258285 | 78258135 | ID=MS.gene037710.t1.exon16;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78258135 | 78258285 | 78258135 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78257966 | 78258034 | 78257966 | ID=MS.gene037710.t1.exon17;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78257966 | 78258034 | 78257966 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78256915 | 78256981 | 78256915 | ID=MS.gene037710.t1.exon18;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78256915 | 78256981 | 78256915 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78256754 | 78256824 | 78256754 | ID=MS.gene037710.t1.exon19;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78256754 | 78256824 | 78256754 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| chr4.3 | exon | 78256340 | 78256421 | 78256340 | ID=MS.gene037710.t1.exon20;Parent=MS.gene037710.t1 |
| chr4.3 | CDS | 78256340 | 78256421 | 78256340 | ID=cds.MS.gene037710.t1;Parent=MS.gene037710.t1 |
| Gene Sequence |
| Protein sequence |
