Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66800.t1 | XP_003606225.1 | 93 | 315 | 22 | 0 | 1 | 315 | 112 | 426 | 8.70E-49 | 205.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66800.t1 | P93203 | 61.2 | 312 | 120 | 1 | 8 | 319 | 106 | 416 | 9.2e-15 | 83.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66800.t1 | G7JKW2 | 93.0 | 315 | 22 | 0 | 1 | 315 | 112 | 426 | 6.3e-49 | 205.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene66800 | 0.847166 | 1.37E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene66800 | 0.859113 | 5.18E-63 | -1.69E-46 |
| MS.gene050971 | MS.gene66800 | 0.820641 | 6.16E-53 | -1.69E-46 |
| MS.gene051255 | MS.gene66800 | 0.805742 | 1.15E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene66800 | 0.810359 | 1.20E-50 | -1.69E-46 |
| MS.gene052777 | MS.gene66800 | -0.829598 | 4.71E-55 | -1.69E-46 |
| MS.gene053449 | MS.gene66800 | 0.816819 | 4.54E-52 | -1.69E-46 |
| MS.gene053813 | MS.gene66800 | 0.817262 | 3.61E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene66800 | 0.809323 | 2.00E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene66800 | 0.810687 | 1.02E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene66800 | 0.821555 | 3.79E-53 | -1.69E-46 |
| MS.gene056410 | MS.gene66800 | 0.807586 | 4.70E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene66800 | 0.822309 | 2.54E-53 | -1.69E-46 |
| MS.gene057668 | MS.gene66800 | 0.82555 | 4.41E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene66800 | 0.813003 | 3.19E-51 | -1.69E-46 |
| MS.gene058075 | MS.gene66800 | 0.802788 | 4.75E-49 | -1.69E-46 |
| MS.gene058459 | MS.gene66800 | 0.832906 | 7.23E-56 | -1.69E-46 |
| MS.gene059674 | MS.gene66800 | 0.823413 | 1.40E-53 | -1.69E-46 |
| MS.gene059711 | MS.gene66800 | 0.88383 | 3.22E-71 | -1.69E-46 |
| MS.gene059807 | MS.gene66800 | 0.837006 | 6.71E-57 | -1.69E-46 |
| MS.gene059974 | MS.gene66800 | 0.80641 | 8.34E-50 | -1.69E-46 |
| MS.gene060569 | MS.gene66800 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene060666 | MS.gene66800 | 0.836653 | 8.25E-57 | -1.69E-46 |
| MS.gene060804 | MS.gene66800 | 0.806754 | 7.06E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene66800 | 0.810253 | 1.26E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene66800 | 0.847813 | 9.12E-60 | -1.69E-46 |
| MS.gene061041 | MS.gene66800 | 0.802095 | 6.60E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66800.t1 | MTR_4g054960 | 95.129 | 657 | 32 | 0 | 1 | 657 | 53 | 709 | 0.0 | 1185 |
| MS.gene66800.t1 | MTR_4g054960 | 95.129 | 657 | 32 | 0 | 1 | 657 | 112 | 768 | 0.0 | 1185 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66800.t1 | AT3G16000 | 47.561 | 574 | 301 | 0 | 7 | 580 | 124 | 697 | 4.57e-142 | 431 |
Find 93 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGAACAACGATTTAC+AGG | 0.220730 | 4.3:-46238809 | MS.gene66800:CDS |
| AGAGAGCAGAGGGAAGAAAT+TGG | 0.259658 | 4.3:-46238509 | MS.gene66800:CDS |
| AGCATTGGATAATTCATCTT+TGG | 0.295929 | 4.3:+46239584 | None:intergenic |
| ATCATATCTTCTGGTCTGTT+GGG | 0.298617 | 4.3:-46240553 | MS.gene66800:CDS |
| CTTTGCCTTTCCAAGTAGTT+TGG | 0.309873 | 4.3:+46239938 | None:intergenic |
| GTGCAAAGATCTTGAGCTTC+AGG | 0.312959 | 4.3:-46239100 | MS.gene66800:CDS |
| TCTCTTCAGACTTCAACTTT+TGG | 0.316670 | 4.3:+46239397 | None:intergenic |
| TGCACTTACAACGACTTCTT+TGG | 0.317800 | 4.3:+46238246 | None:intergenic |
| TACAACGACTTCTTTGGTTT+CGG | 0.328405 | 4.3:+46238252 | None:intergenic |
| TTGCATTTCTTTGTTCTGTA+AGG | 0.330684 | 4.3:+46238605 | None:intergenic |
| CTTTCTTCAATTCATTATCT+AGG | 0.331709 | 4.3:+46239226 | None:intergenic |
| CTTCTTCGGCTTTCTTCAAA+TGG | 0.349786 | 4.3:+46238965 | None:intergenic |
| ATTAATTGAGATCTACAAAA+AGG | 0.357996 | 4.3:-46238878 | MS.gene66800:CDS |
| AAGAGTACTGTCACCAGTTT+GGG | 0.358487 | 4.3:-46239876 | MS.gene66800:CDS |
| GAAGAAATTGGAAGAGGAAT+TGG | 0.359838 | 4.3:-46238497 | MS.gene66800:CDS |
| TAGAAAGGATCACCGAATTT+CGG | 0.364977 | 4.3:+46238695 | None:intergenic |
| GTTATTATTCTCAAGAGTTA+AGG | 0.365187 | 4.3:+46239461 | None:intergenic |
| ATCTGAGCTCGCCGAAGTTA+AGG | 0.367535 | 4.3:-46239064 | MS.gene66800:CDS |
| TGGATAATTCATCTTTGGTT+TGG | 0.368506 | 4.3:+46239589 | None:intergenic |
| GTGTCTCTTCTGAATGGAAT+TGG | 0.373150 | 4.3:-46240577 | MS.gene66800:CDS |
| CAAGATTCTCTTGAGTAACT+TGG | 0.375297 | 4.3:+46239181 | None:intergenic |
| TCCTTTGTGTCTCTTCTGAA+TGG | 0.376856 | 4.3:-46240583 | MS.gene66800:CDS |
| TTCATCTTTGGTTTGGTCAT+AGG | 0.377065 | 4.3:+46239596 | None:intergenic |
| AAAGAGTACTGTCACCAGTT+TGG | 0.379797 | 4.3:-46239877 | MS.gene66800:CDS |
| GTTCATTTCATCTAGTGATT+TGG | 0.384110 | 4.3:+46238717 | None:intergenic |
| AATCATATCTTCTGGTCTGT+TGG | 0.389869 | 4.3:-46240554 | MS.gene66800:CDS |
| CAACGATTTACAGGCTTTGA+AGG | 0.401530 | 4.3:-46238800 | MS.gene66800:CDS |
| GAATTCATCCCTTGCAGAAA+AGG | 0.404773 | 4.3:-46239646 | MS.gene66800:CDS |
| AAGAAATGACTCTACTGAAC+TGG | 0.411333 | 4.3:-46239151 | MS.gene66800:CDS |
| AGATGAAATGAACCGAAATT+CGG | 0.435411 | 4.3:-46238707 | MS.gene66800:CDS |
| GGTACTTTGCAGCTCTTCTT+CGG | 0.439223 | 4.3:+46238951 | None:intergenic |
| TCTTTGTTCTGTAAGGTACT+TGG | 0.441168 | 4.3:+46238612 | None:intergenic |
| GTCTGAAGAGAAGGCCACTT+TGG | 0.441380 | 4.3:-46239385 | MS.gene66800:CDS |
| GGAATTGGAATCATATCTTC+TGG | 0.443046 | 4.3:-46240562 | MS.gene66800:CDS |
| GTCACGAAGAACTGTTGAAA+TGG | 0.446236 | 4.3:-46238755 | MS.gene66800:CDS |
| TAGCCTTGAAAATGAGAAAG+AGG | 0.448244 | 4.3:-46238641 | MS.gene66800:CDS |
| AAGAAGTGAATATGATGTAT+TGG | 0.464888 | 4.3:-46239436 | MS.gene66800:CDS |
| CCTCTTCTAATTCACTAGAA+AGG | 0.465124 | 4.3:+46238680 | None:intergenic |
| TGAATTTAGTTCCATCATCA+AGG | 0.466531 | 4.3:+46239494 | None:intergenic |
| CAACATGTTCTTTGTCCTTG+AGG | 0.467033 | 4.3:+46239679 | None:intergenic |
| CAACCGCAATATTTCACCCT+TGG | 0.468447 | 4.3:+46238468 | None:intergenic |
| AGGAAAAGATTCCTTGATGA+TGG | 0.472629 | 4.3:-46239505 | MS.gene66800:CDS |
| TCATATCTTCTGGTCTGTTG+GGG | 0.477091 | 4.3:-46240552 | MS.gene66800:CDS |
| CGATCTTACAAAGGCTGATA+CGG | 0.477419 | 4.3:-46239787 | MS.gene66800:CDS |
| AGAGACACAAAGGAAGTAGA+TGG | 0.480663 | 4.3:+46240592 | None:intergenic |
| GAAGGCCACTTTGGATGCTA+AGG | 0.485310 | 4.3:-46239376 | MS.gene66800:CDS |
| TGAAAACAAATTGAAAGAAA+AGG | 0.486501 | 4.3:-46239751 | MS.gene66800:CDS |
| TTTGAAGGAGCAAGTATTGA+AGG | 0.492700 | 4.3:-46238785 | MS.gene66800:CDS |
| GAGAGAGTTTAGAGAGCAGA+GGG | 0.494703 | 4.3:-46238519 | MS.gene66800:CDS |
| AAAAGCCAAGAGGAACTAGA+AGG | 0.496547 | 4.3:-46239525 | MS.gene66800:CDS |
| CATAACCTCATTACTAGACT+TGG | 0.503381 | 4.3:-46238550 | MS.gene66800:CDS |
| ATCCCTTGCAGAAAAGGAGT+TGG | 0.505112 | 4.3:-46239640 | MS.gene66800:CDS |
| TTGAATATGAAAATGAGCAT+TGG | 0.513802 | 4.3:+46239569 | None:intergenic |
| GAGGAACAAACCAAACTACT+TGG | 0.517707 | 4.3:-46239948 | MS.gene66800:CDS |
| CTTTGCCAAGTCTAGTAATG+AGG | 0.519176 | 4.3:+46238545 | None:intergenic |
| CAGAGGGAAGAAATTGGAAG+AGG | 0.524169 | 4.3:-46238503 | MS.gene66800:CDS |
| AGTTGTTAACAATGAGCAGC+AGG | 0.529237 | 4.3:-46238290 | MS.gene66800:CDS |
| TGAATATGATGTATTGGAGA+AGG | 0.538059 | 4.3:-46239430 | MS.gene66800:CDS |
| TACTGTCACCAGTTTGGGAA+AGG | 0.541631 | 4.3:-46239871 | MS.gene66800:CDS |
| AGAGGAATTGGCTTCTGCCA+AGG | 0.547273 | 4.3:-46238485 | MS.gene66800:CDS |
| AACTGTTGAAATGGATCTCG+AGG | 0.549243 | 4.3:-46238746 | MS.gene66800:CDS |
| AGAGAGAGTTTAGAGAGCAG+AGG | 0.552368 | 4.3:-46238520 | MS.gene66800:CDS |
| AAAGTTGAAGTCTGAAGAGA+AGG | 0.558645 | 4.3:-46239394 | MS.gene66800:CDS |
| CCTTTCTAGTGAATTAGAAG+AGG | 0.560312 | 4.3:-46238680 | MS.gene66800:CDS |
| GTTGAAGTTATCGAATGAGC+AGG | 0.566234 | 4.3:-46239970 | MS.gene66800:CDS |
| AAGAGCAGGTCGTTTCGTTG+AGG | 0.574604 | 4.3:-46240004 | MS.gene66800:CDS |
| GAGGAATTGGCTTCTGCCAA+GGG | 0.577429 | 4.3:-46238484 | MS.gene66800:CDS |
| AAATGAATCAAGCGAAAACC+AGG | 0.577858 | 4.3:-46239295 | MS.gene66800:CDS |
| CTGCCAAGGGTGAAATATTG+CGG | 0.583288 | 4.3:-46238471 | MS.gene66800:CDS |
| TCTGCTTAGTGAAGACCTCA+AGG | 0.589218 | 4.3:-46239694 | MS.gene66800:CDS |
| TTAAATCAGCGATGACAACC+TGG | 0.590178 | 4.3:+46239277 | None:intergenic |
| TAAGGAGCTGATAACAGTAA+AGG | 0.591426 | 4.3:-46238989 | MS.gene66800:CDS |
| ACAAACCAAACTACTTGGAA+AGG | 0.594982 | 4.3:-46239943 | MS.gene66800:CDS |
| ACAAAGAAATGCAAGCAAAG+AGG | 0.598046 | 4.3:-46238596 | MS.gene66800:CDS |
| CATATCTTCTGGTCTGTTGG+GGG | 0.603076 | 4.3:-46240551 | MS.gene66800:CDS |
| AAGAAGTCGTTGTAAGTGCA+CGG | 0.605490 | 4.3:-46238243 | MS.gene66800:CDS |
| GATTTAACCAAAGAACGAGA+AGG | 0.619090 | 4.3:-46239261 | MS.gene66800:CDS |
| CTGTAGCGAATCCTTAACTT+CGG | 0.622154 | 4.3:+46239053 | None:intergenic |
| TCCATTCAGAAGAGACACAA+AGG | 0.626993 | 4.3:+46240582 | None:intergenic |
| CAAACTACTTGGAAAGGCAA+AGG | 0.627372 | 4.3:-46239937 | MS.gene66800:CDS |
| AGACGAGCTTCATCAGCTAA+CGG | 0.631119 | 4.3:-46239337 | MS.gene66800:CDS |
| ACAGATGAGCAACAAACTGA+AGG | 0.633690 | 4.3:-46240033 | MS.gene66800:intron |
| TGTAGTCGTTAGTTCATGAG+AGG | 0.649860 | 4.3:+46238930 | None:intergenic |
| CAAAACCTTAGCATCCAAAG+TGG | 0.651075 | 4.3:+46239371 | None:intergenic |
| GAAGTTATCGAATGAGCAGG+AGG | 0.659221 | 4.3:-46239967 | MS.gene66800:CDS |
| AAAGGCTGAAGTCACATCAG+AGG | 0.661801 | 4.3:-46238860 | MS.gene66800:CDS |
| ACTACACTTGAAACCCGCGA+TGG | 0.675763 | 4.3:-46238913 | MS.gene66800:CDS |
| TGATGATGCAAAACTCGAGG+CGG | 0.676692 | 4.3:-46239022 | MS.gene66800:CDS |
| ACTTGATGATGCAAAACTCG+AGG | 0.683771 | 4.3:-46239025 | MS.gene66800:CDS |
| GGAGCAAGTATTGAAGGACA+AGG | 0.687727 | 4.3:-46238779 | MS.gene66800:CDS |
| ACTTGAAGTCGATCTTACAA+AGG | 0.692206 | 4.3:-46239796 | MS.gene66800:CDS |
| TGAAATACTGAAAAGCCAAG+AGG | 0.694568 | 4.3:-46239535 | MS.gene66800:CDS |
| TGTTGAAATGGATCTCGAGG+AGG | 0.699159 | 4.3:-46238743 | MS.gene66800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAATGGTTAATTTTTAA+AGG | - | chr4.3:46238703-46238722 | MS.gene66800:CDS | 10.0% |
| !!! | TCTATCTAGTTTTTTTAAAA+TGG | - | chr4.3:46238689-46238708 | MS.gene66800:CDS | 15.0% |
| !! | AGTAAAGTTATAGTTTAAAG+AGG | - | chr4.3:46238605-46238624 | MS.gene66800:CDS | 20.0% |
| !! | ATTAATTGAGATCTACAAAA+AGG | - | chr4.3:46239930-46239949 | MS.gene66800:CDS | 20.0% |
| !! | TGAAAACAAATTGAAAGAAA+AGG | - | chr4.3:46239057-46239076 | MS.gene66800:CDS | 20.0% |
| !!! | AACTTTTGATTTTGAAGAAT+TGG | + | chr4.3:46240376-46240395 | None:intergenic | 20.0% |
| !!! | TACTTTTGATTTTGAAGAAT+TGG | + | chr4.3:46240439-46240458 | None:intergenic | 20.0% |
| !!! | TCTCAATTAATTCTTTTTGT+AGG | + | chr4.3:46239921-46239940 | None:intergenic | 20.0% |
| ! | AAGAAGTGAATATGATGTAT+TGG | - | chr4.3:46239372-46239391 | MS.gene66800:CDS | 25.0% |
| ! | CTTTCTTCAATTCATTATCT+AGG | + | chr4.3:46239585-46239604 | None:intergenic | 25.0% |
| ! | GTTATTATTCTCAAGAGTTA+AGG | + | chr4.3:46239350-46239369 | None:intergenic | 25.0% |
| ! | TTGAATATGAAAATGAGCAT+TGG | + | chr4.3:46239242-46239261 | None:intergenic | 25.0% |
| !! | AATGCTCATTTTCATATTCA+AGG | - | chr4.3:46239241-46239260 | MS.gene66800:CDS | 25.0% |
| !! | ATGCTCATTTTCATATTCAA+GGG | - | chr4.3:46239242-46239261 | MS.gene66800:CDS | 25.0% |
| !! | ATGTGTTAGTCATATTTTAC+TGG | - | chr4.3:46238743-46238762 | MS.gene66800:CDS | 25.0% |
| !! | CTTTTCAATTTCTCAAATCT+TGG | - | chr4.3:46238524-46238543 | MS.gene66800:CDS | 25.0% |
| AATTTCTCAAATCTTGGTCT+CGG | - | chr4.3:46238530-46238549 | MS.gene66800:CDS | 30.0% | |
| AGATGAAATGAACCGAAATT+CGG | - | chr4.3:46240101-46240120 | MS.gene66800:intron | 30.0% | |
| ATAGTTTAAAGAGGAAGTGA+GGG | - | chr4.3:46238614-46238633 | MS.gene66800:CDS | 30.0% | |
| GTTCATTTCATCTAGTGATT+TGG | + | chr4.3:46240094-46240113 | None:intergenic | 30.0% | |
| TATAGTTTAAAGAGGAAGTG+AGG | - | chr4.3:46238613-46238632 | MS.gene66800:CDS | 30.0% | |
| TGAATATGATGTATTGGAGA+AGG | - | chr4.3:46239378-46239397 | MS.gene66800:CDS | 30.0% | |
| TGGATAATTCATCTTTGGTT+TGG | + | chr4.3:46239222-46239241 | None:intergenic | 30.0% | |
| TTCTTTGAACAACGATTTAC+AGG | - | chr4.3:46239999-46240018 | MS.gene66800:CDS | 30.0% | |
| TTGCAACAATAGAAACAGTA+AGG | - | chr4.3:46238319-46238338 | MS.gene66800:CDS | 30.0% | |
| TTGCATTTCTTTGTTCTGTA+AGG | + | chr4.3:46240206-46240225 | None:intergenic | 30.0% | |
| ! | AGCATCTTCAATGTTTTCTT+GGG | + | chr4.3:46240238-46240257 | None:intergenic | 30.0% |
| ! | AGCATTGGATAATTCATCTT+TGG | + | chr4.3:46239227-46239246 | None:intergenic | 30.0% |
| ! | GTTTTCGCTTGATTCATTTA+AGG | + | chr4.3:46239512-46239531 | None:intergenic | 30.0% |
| ! | TCCTCTAGAAACATCAAAAA+GGG | + | chr4.3:46238649-46238668 | None:intergenic | 30.0% |
| ! | TGAATTTAGTTCCATCATCA+AGG | + | chr4.3:46239317-46239336 | None:intergenic | 30.0% |
| ! | TTCCTCTAGAAACATCAAAA+AGG | + | chr4.3:46238650-46238669 | None:intergenic | 30.0% |
| ! | TTTTAAACCTTCTCGTTCTT+TGG | + | chr4.3:46239557-46239576 | None:intergenic | 30.0% |
| AAAGTTGAAGTCTGAAGAGA+AGG | - | chr4.3:46239414-46239433 | MS.gene66800:CDS | 35.0% | |
| AAATGAATCAAGCGAAAACC+AGG | - | chr4.3:46239513-46239532 | MS.gene66800:CDS | 35.0% | |
| AAGAAATGACTCTACTGAAC+TGG | - | chr4.3:46239657-46239676 | MS.gene66800:CDS | 35.0% | |
| AATCATATCTTCTGGTCTGT+TGG | - | chr4.3:46238254-46238273 | MS.gene66800:CDS | 35.0% | |
| ACAAACCAAACTACTTGGAA+AGG | - | chr4.3:46238865-46238884 | MS.gene66800:CDS | 35.0% | |
| ACAAAGAAATGCAAGCAAAG+AGG | - | chr4.3:46240212-46240231 | MS.gene66800:intron | 35.0% | |
| ACTTGAAGTCGATCTTACAA+AGG | - | chr4.3:46239012-46239031 | MS.gene66800:CDS | 35.0% | |
| AGGAAAAGATTCCTTGATGA+TGG | - | chr4.3:46239303-46239322 | MS.gene66800:CDS | 35.0% | |
| ATCATATCTTCTGGTCTGTT+GGG | - | chr4.3:46238255-46238274 | MS.gene66800:CDS | 35.0% | |
| CAAGATTCTCTTGAGTAACT+TGG | + | chr4.3:46239630-46239649 | None:intergenic | 35.0% | |
| CATAACCTCATTACTAGACT+TGG | - | chr4.3:46240258-46240277 | MS.gene66800:intron | 35.0% | |
| CCTCTTCTAATTCACTAGAA+AGG | + | chr4.3:46240131-46240150 | None:intergenic | 35.0% | |
| GAAAACCAGTAAGACATGTA+TGG | - | chr4.3:46238368-46238387 | MS.gene66800:CDS | 35.0% | |
| GAAGAAATTGGAAGAGGAAT+TGG | - | chr4.3:46240311-46240330 | MS.gene66800:intron | 35.0% | |
| GATTTAACCAAAGAACGAGA+AGG | - | chr4.3:46239547-46239566 | MS.gene66800:CDS | 35.0% | |
| GCACAAACATTTCAGATTGA+CGG | - | chr4.3:46238424-46238443 | MS.gene66800:CDS | 35.0% | |
| GCTAAAAAGCGAGAAAAGTT+TGG | - | chr4.3:46238961-46238980 | MS.gene66800:CDS | 35.0% | |
| GGAATTGGAATCATATCTTC+TGG | - | chr4.3:46238246-46238265 | MS.gene66800:CDS | 35.0% | |
| TAAGGAGCTGATAACAGTAA+AGG | - | chr4.3:46239819-46239838 | MS.gene66800:CDS | 35.0% | |
| TAGAAAGGATCACCGAATTT+CGG | + | chr4.3:46240116-46240135 | None:intergenic | 35.0% | |
| TGAAATACTGAAAAGCCAAG+AGG | - | chr4.3:46239273-46239292 | MS.gene66800:CDS | 35.0% | |
| ! | CCTTTCTAGTGAATTAGAAG+AGG | - | chr4.3:46240128-46240147 | MS.gene66800:intron | 35.0% |
| ! | GAACCTCTTTCTCATTTTCA+AGG | + | chr4.3:46240173-46240192 | None:intergenic | 35.0% |
| ! | GAGCATCTTCAATGTTTTCT+TGG | + | chr4.3:46240239-46240258 | None:intergenic | 35.0% |
| ! | TACAACGACTTCTTTGGTTT+CGG | + | chr4.3:46240559-46240578 | None:intergenic | 35.0% |
| ! | TAGCCTTGAAAATGAGAAAG+AGG | - | chr4.3:46240167-46240186 | MS.gene66800:intron | 35.0% |
| ! | TCTCTTCAGACTTCAACTTT+TGG | + | chr4.3:46239414-46239433 | None:intergenic | 35.0% |
| ! | TCTTTGTTCTGTAAGGTACT+TGG | + | chr4.3:46240199-46240218 | None:intergenic | 35.0% |
| !! | TTCATCTTTGGTTTGGTCAT+AGG | + | chr4.3:46239215-46239234 | None:intergenic | 35.0% |
| !! | TTTGAAGGAGCAAGTATTGA+AGG | - | chr4.3:46240023-46240042 | MS.gene66800:CDS | 35.0% |
| !!! | TCCCTTTTTGATGTTTCTAG+AGG | - | chr4.3:46238645-46238664 | MS.gene66800:CDS | 35.0% |
| AAAAGCCAAGAGGAACTAGA+AGG | - | chr4.3:46239283-46239302 | MS.gene66800:CDS | 40.0% | |
| AAAGGCCATACATGTCTTAC+TGG | + | chr4.3:46238376-46238395 | None:intergenic | 40.0% | |
| AACTGTTGAAATGGATCTCG+AGG | - | chr4.3:46240062-46240081 | MS.gene66800:intron | 40.0% | |
| AAGAAGTCGTTGTAAGTGCA+CGG | - | chr4.3:46240565-46240584 | MS.gene66800:CDS | 40.0% | |
| ACAGATGAGCAACAAACTGA+AGG | - | chr4.3:46238775-46238794 | MS.gene66800:CDS | 40.0% | |
| ACTGAAGGAAAAAGAAGAGC+AGG | - | chr4.3:46238790-46238809 | MS.gene66800:CDS | 40.0% | |
| AGAAGAGAGACATTCCTCAA+AGG | + | chr4.3:46238394-46238413 | None:intergenic | 40.0% | |
| AGAGACACAAAGGAAGTAGA+TGG | + | chr4.3:46238219-46238238 | None:intergenic | 40.0% | |
| AGTTGTTAACAATGAGCAGC+AGG | - | chr4.3:46240518-46240537 | MS.gene66800:CDS | 40.0% | |
| CAAAACCTTAGCATCCAAAG+TGG | + | chr4.3:46239440-46239459 | None:intergenic | 40.0% | |
| CAAACTACTTGGAAAGGCAA+AGG | - | chr4.3:46238871-46238890 | MS.gene66800:CDS | 40.0% | |
| CAACATGTTCTTTGTCCTTG+AGG | + | chr4.3:46239132-46239151 | None:intergenic | 40.0% | |
| CGATCTTACAAAGGCTGATA+CGG | - | chr4.3:46239021-46239040 | MS.gene66800:CDS | 40.0% | |
| CTGTAGCGAATCCTTAACTT+CGG | + | chr4.3:46239758-46239777 | None:intergenic | 40.0% | |
| CTTCTTCGGCTTTCTTCAAA+TGG | + | chr4.3:46239846-46239865 | None:intergenic | 40.0% | |
| CTTTGCCAAGTCTAGTAATG+AGG | + | chr4.3:46240266-46240285 | None:intergenic | 40.0% | |
| CTTTGCCTTTCCAAGTAGTT+TGG | + | chr4.3:46238873-46238892 | None:intergenic | 40.0% | |
| GAATTCATCCCTTGCAGAAA+AGG | - | chr4.3:46239162-46239181 | MS.gene66800:CDS | 40.0% | |
| GAGGAACAAACCAAACTACT+TGG | - | chr4.3:46238860-46238879 | MS.gene66800:CDS | 40.0% | |
| GTCACGAAGAACTGTTGAAA+TGG | - | chr4.3:46240053-46240072 | MS.gene66800:intron | 40.0% | |
| GTGTCTCTTCTGAATGGAAT+TGG | - | chr4.3:46238231-46238250 | MS.gene66800:CDS | 40.0% | |
| GTTGAAGTTATCGAATGAGC+AGG | - | chr4.3:46238838-46238857 | MS.gene66800:CDS | 40.0% | |
| TAAGACATGTATGGCCTTTG+AGG | - | chr4.3:46238377-46238396 | MS.gene66800:CDS | 40.0% | |
| TCATATCTTCTGGTCTGTTG+GGG | - | chr4.3:46238256-46238275 | MS.gene66800:CDS | 40.0% | |
| TCCATTCAGAAGAGACACAA+AGG | + | chr4.3:46238229-46238248 | None:intergenic | 40.0% | |
| TCCTTTGTGTCTCTTCTGAA+TGG | - | chr4.3:46238225-46238244 | MS.gene66800:CDS | 40.0% | |
| TGCACTTACAACGACTTCTT+TGG | + | chr4.3:46240565-46240584 | None:intergenic | 40.0% | |
| TGTAGTCGTTAGTTCATGAG+AGG | + | chr4.3:46239881-46239900 | None:intergenic | 40.0% | |
| TGTCAGTGTCATACAAGTCT+CGG | + | chr4.3:46238480-46238499 | None:intergenic | 40.0% | |
| TTAAATCAGCGATGACAACC+TGG | + | chr4.3:46239534-46239553 | None:intergenic | 40.0% | |
| ! | ATTCCAACTCCTTTTCTGCA+AGG | + | chr4.3:46239174-46239193 | None:intergenic | 40.0% |
| ! | ATTCTTTTTGTAGGCCATCG+CGG | + | chr4.3:46239912-46239931 | None:intergenic | 40.0% |
| ! | CAACGATTTACAGGCTTTGA+AGG | - | chr4.3:46240008-46240027 | MS.gene66800:CDS | 40.0% |
| ! | TTCCAACTCCTTTTCTGCAA+GGG | + | chr4.3:46239173-46239192 | None:intergenic | 40.0% |
| !! | AAAGAGTACTGTCACCAGTT+TGG | - | chr4.3:46238931-46238950 | MS.gene66800:CDS | 40.0% |
| !! | AAGAGTACTGTCACCAGTTT+GGG | - | chr4.3:46238932-46238951 | MS.gene66800:CDS | 40.0% |
| !! | ACTTGATGATGCAAAACTCG+AGG | - | chr4.3:46239783-46239802 | MS.gene66800:CDS | 40.0% |
| !! | AGTCACATCAGAGGTTTTGA+AGG | - | chr4.3:46239957-46239976 | MS.gene66800:CDS | 40.0% |
| !!! | CTTTTCCTTCTAGTTCCTCT+TGG | + | chr4.3:46239291-46239310 | None:intergenic | 40.0% |
| !!! | TTTTAGCTCCTTTCCCAAAC+TGG | + | chr4.3:46238948-46238967 | None:intergenic | 40.0% |
| AAAGGCTGAAGTCACATCAG+AGG | - | chr4.3:46239948-46239967 | MS.gene66800:CDS | 45.0% | |
| AGACGAGCTTCATCAGCTAA+CGG | - | chr4.3:46239471-46239490 | MS.gene66800:CDS | 45.0% | |
| AGAGAGAGTTTAGAGAGCAG+AGG | - | chr4.3:46240288-46240307 | MS.gene66800:intron | 45.0% | |
| AGAGAGCAGAGGGAAGAAAT+TGG | - | chr4.3:46240299-46240318 | MS.gene66800:intron | 45.0% | |
| ATCCCTTGCAGAAAAGGAGT+TGG | - | chr4.3:46239168-46239187 | MS.gene66800:CDS | 45.0% | |
| CAACCGCAATATTTCACCCT+TGG | + | chr4.3:46240343-46240362 | None:intergenic | 45.0% | |
| CAGAGGGAAGAAATTGGAAG+AGG | - | chr4.3:46240305-46240324 | MS.gene66800:intron | 45.0% | |
| CATATCTTCTGGTCTGTTGG+GGG | - | chr4.3:46238257-46238276 | MS.gene66800:CDS | 45.0% | |
| CGAGGCGGAAAAATTGACTA+AGG | - | chr4.3:46239801-46239820 | MS.gene66800:CDS | 45.0% | |
| CTGCCAAGGGTGAAATATTG+CGG | - | chr4.3:46240337-46240356 | MS.gene66800:intron | 45.0% | |
| GAAGTTATCGAATGAGCAGG+AGG | - | chr4.3:46238841-46238860 | MS.gene66800:CDS | 45.0% | |
| GAGAGAGTTTAGAGAGCAGA+GGG | - | chr4.3:46240289-46240308 | MS.gene66800:intron | 45.0% | |
| GGTACTTTGCAGCTCTTCTT+CGG | + | chr4.3:46239860-46239879 | None:intergenic | 45.0% | |
| GTCAGTGTCATACAAGTCTC+GGG | + | chr4.3:46238479-46238498 | None:intergenic | 45.0% | |
| GTGCAAAGATCTTGAGCTTC+AGG | - | chr4.3:46239708-46239727 | MS.gene66800:CDS | 45.0% | |
| TACTGTCACCAGTTTGGGAA+AGG | - | chr4.3:46238937-46238956 | MS.gene66800:CDS | 45.0% | |
| TCTGCTTAGTGAAGACCTCA+AGG | - | chr4.3:46239114-46239133 | MS.gene66800:CDS | 45.0% | |
| TGTTGAAATGGATCTCGAGG+AGG | - | chr4.3:46240065-46240084 | MS.gene66800:intron | 45.0% | |
| ! | TCAAATCTTGGTCTCGGTGT+TGG | - | chr4.3:46238536-46238555 | MS.gene66800:CDS | 45.0% |
| ! | TGATGATGCAAAACTCGAGG+CGG | - | chr4.3:46239786-46239805 | MS.gene66800:CDS | 45.0% |
| ! | TTCTTTTTGTAGGCCATCGC+GGG | + | chr4.3:46239911-46239930 | None:intergenic | 45.0% |
| !! | GGAGCAAGTATTGAAGGACA+AGG | - | chr4.3:46240029-46240048 | MS.gene66800:CDS | 45.0% |
| AAGAGCAGGTCGTTTCGTTG+AGG | - | chr4.3:46238804-46238823 | MS.gene66800:CDS | 50.0% | |
| ACTACACTTGAAACCCGCGA+TGG | - | chr4.3:46239895-46239914 | MS.gene66800:CDS | 50.0% | |
| ATCTGAGCTCGCCGAAGTTA+AGG | - | chr4.3:46239744-46239763 | MS.gene66800:CDS | 50.0% | |
| GTCTGAAGAGAAGGCCACTT+TGG | - | chr4.3:46239423-46239442 | MS.gene66800:CDS | 50.0% | |
| ! | AGAGGAATTGGCTTCTGCCA+AGG | - | chr4.3:46240323-46240342 | MS.gene66800:intron | 50.0% |
| ! | GAAGGCCACTTTGGATGCTA+AGG | - | chr4.3:46239432-46239451 | MS.gene66800:CDS | 50.0% |
| ! | GAGGAATTGGCTTCTGCCAA+GGG | - | chr4.3:46240324-46240343 | MS.gene66800:intron | 50.0% |
| CCAATACATGCCGGACACTC+AGG | + | chr4.3:46238454-46238473 | None:intergenic | 55.0% | |
| CCTGAGTGTCCGGCATGTAT+TGG | - | chr4.3:46238451-46238470 | MS.gene66800:CDS | 55.0% | |
| TCTCGGGCACCAATACATGC+CGG | + | chr4.3:46238463-46238482 | None:intergenic | 55.0% | |
| !! | CTCGGTGTTGGTGTCGTGTT+CGG | - | chr4.3:46238548-46238567 | MS.gene66800:CDS | 55.0% |
| TGACGGTGTGCCTGAGTGTC+CGG | - | chr4.3:46238441-46238460 | MS.gene66800:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 46238207 | 46240623 | 46238207 | ID=MS.gene66800 |
| chr4.3 | mRNA | 46238207 | 46240623 | 46238207 | ID=MS.gene66800.t1;Parent=MS.gene66800 |
| chr4.3 | exon | 46240495 | 46240623 | 46240495 | ID=MS.gene66800.t1.exon1;Parent=MS.gene66800.t1 |
| chr4.3 | CDS | 46240495 | 46240623 | 46240495 | ID=cds.MS.gene66800.t1;Parent=MS.gene66800.t1 |
| chr4.3 | exon | 46238207 | 46240051 | 46238207 | ID=MS.gene66800.t1.exon2;Parent=MS.gene66800.t1 |
| chr4.3 | CDS | 46238207 | 46240051 | 46238207 | ID=cds.MS.gene66800.t1;Parent=MS.gene66800.t1 |
| Gene Sequence |
| Protein sequence |
