Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78111.t1 | XP_024638673.1 | 87.6 | 493 | 59 | 1 | 1 | 491 | 1 | 493 | 4.90E-113 | 419.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78111.t1 | P93203 | 60.9 | 312 | 121 | 1 | 183 | 494 | 106 | 416 | 4.4e-14 | 81.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78111.t1 | G7JKW2 | 76.3 | 493 | 49 | 2 | 1 | 491 | 1 | 427 | 3.8e-75 | 292.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene78111 | 0.802318 | 5.94E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene78111 | 0.808805 | 2.59E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene78111 | 0.80781 | 4.21E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene78111 | 0.810625 | 1.05E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene78111 | 0.807274 | 5.48E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene78111 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene054486 | MS.gene78111 | 0.813049 | 3.12E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene78111 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene055486 | MS.gene78111 | 0.836083 | 1.15E-56 | -1.69E-46 |
| MS.gene055909 | MS.gene78111 | 0.832915 | 7.20E-56 | -1.69E-46 |
| MS.gene055911 | MS.gene78111 | 0.836827 | 7.45E-57 | -1.69E-46 |
| MS.gene05601 | MS.gene78111 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene78111 | 0.81705 | 4.03E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene78111 | 0.801359 | 9.35E-49 | -1.69E-46 |
| MS.gene056942 | MS.gene78111 | 0.805915 | 1.06E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene78111 | 0.803606 | 3.22E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene78111 | 0.809925 | 1.49E-50 | -1.69E-46 |
| MS.gene05883 | MS.gene78111 | 0.808525 | 2.97E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene78111 | 0.802731 | 4.88E-49 | -1.69E-46 |
| MS.gene059368 | MS.gene78111 | 0.810789 | 9.68E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene78111 | 0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene78111 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene059749 | MS.gene78111 | 0.802443 | 5.60E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene78111 | 0.800172 | 1.63E-48 | -1.69E-46 |
| MS.gene060835 | MS.gene78111 | 0.808621 | 2.83E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene78111 | 0.817197 | 3.74E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78111.t1 | MTR_4g054960 | 83.393 | 837 | 65 | 7 | 1 | 832 | 1 | 768 | 0.0 | 1271 |
| MS.gene78111.t1 | MTR_4g054960 | 95.346 | 709 | 33 | 0 | 124 | 832 | 1 | 709 | 0.0 | 1256 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78111.t1 | AT3G16000 | 47.295 | 573 | 302 | 0 | 183 | 755 | 125 | 697 | 2.19e-138 | 427 |
Find 132 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGATGGTTTCTCCATTTC+AGG | 0.199946 | 4.4:+48011894 | None:intergenic |
| CAAGAGAACGTTTCTGTTAA+TGG | 0.203507 | 4.4:-48014709 | MS.gene78111:CDS |
| TTCTTTGAACAACGATTTAC+AGG | 0.220730 | 4.4:-48010070 | MS.gene78111:CDS |
| AGAGAGCAGAGGGAAGAAAT+TGG | 0.259658 | 4.4:-48009770 | MS.gene78111:CDS |
| GGAGCTGCTTGGTGGTTCTA+TGG | 0.294399 | 4.4:+48014784 | None:intergenic |
| AGCATTGGATAATTCATCTT+TGG | 0.295929 | 4.4:+48010845 | None:intergenic |
| ATCATATCTTCTGGTCTGTT+GGG | 0.298617 | 4.4:-48011840 | MS.gene78111:CDS |
| CTTTGCCTTTCCAAGTAGTT+TGG | 0.308949 | 4.4:+48011199 | None:intergenic |
| TCTCTTCAGACTTCAACTTT+TGG | 0.316670 | 4.4:+48010658 | None:intergenic |
| TGCACTTACAACGACTTCTT+TGG | 0.317800 | 4.4:+48009507 | None:intergenic |
| AAGAAATGACTCTGCTGAAC+TGG | 0.330382 | 4.4:-48010412 | MS.gene78111:CDS |
| TTGCATTTCTTTGTTCTGTA+AGG | 0.330684 | 4.4:+48009866 | None:intergenic |
| CTTTCTTTGATTCATTATCT+AGG | 0.341810 | 4.4:+48010487 | None:intergenic |
| GTGCAAAGATCATGAGCTTC+AGG | 0.342422 | 4.4:-48010361 | MS.gene78111:CDS |
| TTGAAAGGATCACCGAATTT+CGG | 0.347217 | 4.4:+48009956 | None:intergenic |
| AACGTTCTCTTGTTGCATAT+TGG | 0.348683 | 4.4:+48014720 | None:intergenic |
| AAGAGAACGTTTCTGTTAAT+GGG | 0.356090 | 4.4:-48014708 | MS.gene78111:CDS |
| AAAGAAGAAGGGAAGAGAAA+TGG | 0.356422 | 4.4:+48014825 | None:intergenic |
| ATTAATTGAGATCTACAAAA+AGG | 0.357996 | 4.4:-48010139 | MS.gene78111:CDS |
| AAGAGTACTGTCACCAGTTT+GGG | 0.358487 | 4.4:-48011137 | MS.gene78111:CDS |
| GAAGAAATTGGAAGAGGAAT+TGG | 0.359838 | 4.4:-48009758 | MS.gene78111:CDS |
| GTTATTATTCTCAAGAGTTA+AGG | 0.365187 | 4.4:+48010722 | None:intergenic |
| ATCTGAGCTCGCCGAAGTTA+AGG | 0.367535 | 4.4:-48010325 | MS.gene78111:CDS |
| TGGATAATTCATCTTTGGTT+TGG | 0.368506 | 4.4:+48010850 | None:intergenic |
| TTCATCTTTGGTTTGGTCAT+AGG | 0.373004 | 4.4:+48010857 | None:intergenic |
| GTGTCTCTTCTGAATGGAAT+TGG | 0.373150 | 4.4:-48011864 | MS.gene78111:CDS |
| ACATCAGCATCCACAAATTC+AGG | 0.373385 | 4.4:-48013245 | MS.gene78111:intron |
| CAAGATTCTCTTGAGTAACT+TGG | 0.375297 | 4.4:+48010442 | None:intergenic |
| TCCTTTGTGTCTCTTCTGAA+TGG | 0.376856 | 4.4:-48011870 | MS.gene78111:CDS |
| AAAGAGTACTGTCACCAGTT+TGG | 0.379797 | 4.4:-48011138 | MS.gene78111:CDS |
| GTTCATTTCATCTAGTGATT+TGG | 0.384110 | 4.4:+48009978 | None:intergenic |
| AATCATATCTTCTGGTCTGT+TGG | 0.389869 | 4.4:-48011841 | MS.gene78111:CDS |
| CAACGATTTACAGGCTTTGA+AGG | 0.401530 | 4.4:-48010061 | MS.gene78111:CDS |
| GAATTCATCCCTTGCAGAAA+AGG | 0.404773 | 4.4:-48010907 | MS.gene78111:CDS |
| AAGAAGAAGGGAAGAGAAAT+GGG | 0.409357 | 4.4:+48014826 | None:intergenic |
| CTCTTGAGAATAATAACTTA+AGG | 0.424998 | 4.4:-48010716 | MS.gene78111:CDS |
| TGGACAGGCAGCACCTGAAA+TGG | 0.426569 | 4.4:-48011907 | MS.gene78111:intron |
| AATGCTCATTTGCATATTCA+AGG | 0.427901 | 4.4:-48010828 | MS.gene78111:CDS |
| AGATGAAATGAACCGAAATT+CGG | 0.435411 | 4.4:-48009968 | MS.gene78111:CDS |
| AATGTCTGAAAGGGAGATAT+CGG | 0.438022 | 4.4:+48013286 | None:intergenic |
| GGTACTTTGCAGCTCTTCTT+CGG | 0.439223 | 4.4:+48010212 | None:intergenic |
| TCTTTGTTCTGTAAGGTACT+TGG | 0.441168 | 4.4:+48009873 | None:intergenic |
| GTCTGAAGAGAAGGCCACTT+TGG | 0.441380 | 4.4:-48010646 | MS.gene78111:CDS |
| GGAATTGGAATCATATCTTC+TGG | 0.443046 | 4.4:-48011849 | MS.gene78111:CDS |
| CAAAGAGGTACCTGAATTTG+TGG | 0.443508 | 4.4:+48013235 | None:intergenic |
| GTCACGAAGAACTGTTGAAA+TGG | 0.446236 | 4.4:-48010016 | MS.gene78111:CDS |
| TAGCCTTGAAAATGAGAAAG+AGG | 0.448244 | 4.4:-48009902 | MS.gene78111:CDS |
| CGAGAGCAACATACCACAAC+GGG | 0.451068 | 4.4:+48014756 | None:intergenic |
| AAGGAGTGAATATGATGTAT+TGG | 0.464888 | 4.4:-48010697 | MS.gene78111:CDS |
| TTTGAAGGAGCAACTATTGA+AGG | 0.466101 | 4.4:-48010046 | MS.gene78111:CDS |
| CAACATGTTCTTTGTCCTTG+AGG | 0.467033 | 4.4:+48010940 | None:intergenic |
| CAACCGCAATATTTCACCCT+TGG | 0.468447 | 4.4:+48009729 | None:intergenic |
| GGCAGTGTTGAATTTGAGAA+AGG | 0.471651 | 4.4:+48014671 | None:intergenic |
| TCATATCTTCTGGTCTGTTG+GGG | 0.477091 | 4.4:-48011839 | MS.gene78111:CDS |
| GAGGAACAAGCCAAACTACT+TGG | 0.479307 | 4.4:-48011209 | MS.gene78111:CDS |
| AGAGACACAAAGGAAGTAGA+TGG | 0.480663 | 4.4:+48011879 | None:intergenic |
| GAAGGCCACTTTGGATGCTA+AGG | 0.485310 | 4.4:-48010637 | MS.gene78111:CDS |
| CGAACAGAGTCCCGAGAGGA+AGG | 0.485563 | 4.4:+48013380 | None:intergenic |
| TGAAAACAAATTGAAAGAAA+AGG | 0.486501 | 4.4:-48011012 | MS.gene78111:CDS |
| CAGAAAAGGAGTTGGAATTG+AGG | 0.492247 | 4.4:-48010893 | MS.gene78111:CDS |
| AATTGCTTCAACAGCGGCAT+CGG | 0.493404 | 4.4:+48014650 | None:intergenic |
| GAGAGAGTTTAGAGAGCAGA+GGG | 0.494703 | 4.4:-48009780 | MS.gene78111:CDS |
| ACAACGTTTCCCTTCCTCTC+GGG | 0.495837 | 4.4:-48013390 | MS.gene78111:CDS |
| CCTCTTCTAGTTCACTTGAA+AGG | 0.496177 | 4.4:+48009941 | None:intergenic |
| AAAAGCCAAGAGGAACTAGA+AGG | 0.496547 | 4.4:-48010786 | MS.gene78111:CDS |
| TTGAATATGCAAATGAGCAT+TGG | 0.496620 | 4.4:+48010830 | None:intergenic |
| CATAACCTCATTACTAGACT+TGG | 0.503381 | 4.4:-48009811 | MS.gene78111:CDS |
| ATCCCTTGCAGAAAAGGAGT+TGG | 0.505112 | 4.4:-48010901 | MS.gene78111:CDS |
| GAGCTGCTTGGTGGTTCTAT+GGG | 0.506268 | 4.4:+48014785 | None:intergenic |
| TGATGAGACAATGTCTGAAA+GGG | 0.511346 | 4.4:+48013277 | None:intergenic |
| GGGAGCACGGAGCTGCTTGG+TGG | 0.514022 | 4.4:+48014776 | None:intergenic |
| CTTTGCCAAGTCTAGTAATG+AGG | 0.519176 | 4.4:+48009806 | None:intergenic |
| AGGAAAACATTCCTTGGTGA+TGG | 0.522001 | 4.4:-48010766 | MS.gene78111:CDS |
| ACTAGAAGGAAAACATTCCT+TGG | 0.522446 | 4.4:-48010772 | MS.gene78111:CDS |
| CAGAGGGAAGAAATTGGAAG+AGG | 0.524169 | 4.4:-48009764 | MS.gene78111:CDS |
| AACGGGAGCACGGAGCTGCT+TGG | 0.532674 | 4.4:+48014773 | None:intergenic |
| CCTTTCAAGTGAACTAGAAG+AGG | 0.537070 | 4.4:-48009941 | MS.gene78111:CDS |
| ATGATGAGACAATGTCTGAA+AGG | 0.539953 | 4.4:+48013276 | None:intergenic |
| TACTGTCACCAGTTTGGGAA+AGG | 0.541631 | 4.4:-48011132 | MS.gene78111:CDS |
| GACAACGTTTCCCTTCCTCT+CGG | 0.542243 | 4.4:-48013391 | MS.gene78111:CDS |
| GCAGTGTTGAATTTGAGAAA+GGG | 0.546459 | 4.4:+48014672 | None:intergenic |
| TGAATATGATGTATTGGAGA+AGG | 0.547117 | 4.4:-48010691 | MS.gene78111:CDS |
| AGAGGAATTGGCTTCTGCCA+AGG | 0.547273 | 4.4:-48009746 | MS.gene78111:CDS |
| AACTGTTGAAATGGATCTCG+AGG | 0.549243 | 4.4:-48010007 | MS.gene78111:CDS |
| ATGCTCATTTGCATATTCAA+GGG | 0.550925 | 4.4:-48010827 | MS.gene78111:CDS |
| AGAGAGAGTTTAGAGAGCAG+AGG | 0.552368 | 4.4:-48009781 | MS.gene78111:CDS |
| AAGAGAAATGGGTATAGAAG+CGG | 0.554477 | 4.4:+48014837 | None:intergenic |
| AAAGTTGAAGTCTGAAGAGA+AGG | 0.558645 | 4.4:-48010655 | MS.gene78111:CDS |
| GCAGCTCCGTGCTCCCGTTG+TGG | 0.560542 | 4.4:-48014769 | MS.gene78111:CDS |
| ATGTCTGAAAGGGAGATATC+GGG | 0.568550 | 4.4:+48013287 | None:intergenic |
| AAGAGCAGGTCGTTTCGTTG+AGG | 0.574604 | 4.4:-48011265 | MS.gene78111:CDS |
| AACATACCACAACGGGAGCA+CGG | 0.575250 | 4.4:+48014763 | None:intergenic |
| GAGGAATTGGCTTCTGCCAA+GGG | 0.577429 | 4.4:-48009745 | MS.gene78111:CDS |
| AAATGAATCAAGCGAAAACC+AGG | 0.577858 | 4.4:-48010556 | MS.gene78111:CDS |
| CTGCCAAGGGTGAAATATTG+CGG | 0.583288 | 4.4:-48009732 | MS.gene78111:CDS |
| TAAGGAGCTGATAACAGTAA+AGG | 0.584606 | 4.4:-48010250 | MS.gene78111:CDS |
| GTTGAAGTTATCGAACGAGC+AGG | 0.586669 | 4.4:-48011231 | MS.gene78111:CDS |
| TCTGCTTAGTGAAGACCTCA+AGG | 0.589218 | 4.4:-48010955 | MS.gene78111:CDS |
| TTAAATCAGCGATGACAACC+TGG | 0.590178 | 4.4:+48010538 | None:intergenic |
| ACAAGCCAAACTACTTGGAA+AGG | 0.594982 | 4.4:-48011204 | MS.gene78111:CDS |
| TCTATGGGAACGACAAGAAG+AGG | 0.596751 | 4.4:+48014800 | None:intergenic |
| CATATCTTCTGGTCTGTTGG+GGG | 0.603076 | 4.4:-48011838 | MS.gene78111:CDS |
| AAGAAGTCGTTGTAAGTGCA+CGG | 0.605490 | 4.4:-48009504 | MS.gene78111:CDS |
| ATGGGTATAGAAGCGGAGAG+TGG | 0.608813 | 4.4:+48014844 | None:intergenic |
| ACAAAGAAATGCAAGCAAAG+AGG | 0.610417 | 4.4:-48009857 | MS.gene78111:CDS |
| GGAAACGTTGTCTACGAACA+CGG | 0.610673 | 4.4:+48013402 | None:intergenic |
| ACAGATGAGCAACAAACTGA+AGG | 0.617268 | 4.4:-48011294 | MS.gene78111:intron |
| GATTTAACCAAAGAACGAGA+AGG | 0.619090 | 4.4:-48010522 | MS.gene78111:CDS |
| GAAACGTTGTCTACGAACAC+GGG | 0.621331 | 4.4:+48013403 | None:intergenic |
| CAAACTACTTGGAAAGGCAA+AGG | 0.621802 | 4.4:-48011198 | MS.gene78111:CDS |
| CTGTAGCGAATCCTTAACTT+CGG | 0.622154 | 4.4:+48010314 | None:intergenic |
| TGAATTTAGTTCCATCACCA+AGG | 0.625407 | 4.4:+48010755 | None:intergenic |
| TCCATTCAGAAGAGACACAA+AGG | 0.626993 | 4.4:+48011869 | None:intergenic |
| GAACAGAGTCCCGAGAGGAA+GGG | 0.629936 | 4.4:+48013381 | None:intergenic |
| AGACGAGCTTCATCAGCTAA+CGG | 0.631119 | 4.4:-48010598 | MS.gene78111:CDS |
| TGTAGTCGTTAGTTCATGAG+AGG | 0.649860 | 4.4:+48010191 | None:intergenic |
| CAAAACCTTAGCATCCAAAG+TGG | 0.651075 | 4.4:+48010632 | None:intergenic |
| GAGATATCGGGACTAAAGAG+AGG | 0.658930 | 4.4:+48013299 | None:intergenic |
| GAAGTTATCGAACGAGCAGG+AGG | 0.659936 | 4.4:-48011228 | MS.gene78111:CDS |
| TCTCCTTACAGAAGAAAGTG+AGG | 0.661466 | 4.4:-48012050 | MS.gene78111:intron |
| AAAGGCTGAAGTCACATCAG+AGG | 0.661801 | 4.4:-48010121 | MS.gene78111:CDS |
| ACTTGAAATCGATCTTACAA+AGG | 0.662821 | 4.4:-48011057 | MS.gene78111:CDS |
| TGAAAGAATTGCTTCAACAG+CGG | 0.672363 | 4.4:+48014644 | None:intergenic |
| ACTACACTTGAAACCCGCGA+TGG | 0.675763 | 4.4:-48010174 | MS.gene78111:CDS |
| ACTTGATGATGCAAAACTCG+AGG | 0.683771 | 4.4:-48010286 | MS.gene78111:CDS |
| GGAGCAACTATTGAAGGACA+AGG | 0.687284 | 4.4:-48010040 | MS.gene78111:CDS |
| AAGTGAGGTGAAGATACCAG+AGG | 0.692163 | 4.4:-48012035 | MS.gene78111:CDS |
| TGAAATACTGAAAAGCCAAG+AGG | 0.694568 | 4.4:-48010796 | MS.gene78111:CDS |
| TGTTGAAATGGATCTCGAGG+AGG | 0.699159 | 4.4:-48010004 | MS.gene78111:CDS |
| TACGTCGTCTGCGAATAGAG+CGG | 0.702402 | 4.4:+48013345 | None:intergenic |
| ACGAGAGCAACATACCACAA+CGG | 0.704981 | 4.4:+48014755 | None:intergenic |
| ACTGCGAACAGAGTCCCGAG+AGG | 0.735572 | 4.4:+48013376 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATGATGATTTAAT+TGG | + | chr4.4:48009811-48009830 | None:intergenic | 10.0% |
| !! | AATATTTGAAAGTTTAATGA+AGG | - | chr4.4:48010340-48010359 | MS.gene78111:CDS | 15.0% |
| !! | ATTAAAATTATTCAGCTAAA+AGG | - | chr4.4:48011824-48011843 | MS.gene78111:CDS | 15.0% |
| !!! | CTTTAAAATACAGTTTTAAA+AGG | + | chr4.4:48010434-48010453 | None:intergenic | 15.0% |
| !!! | TCTATCTAGTTTTTTTTAAA+TGG | - | chr4.4:48012946-48012965 | MS.gene78111:intron | 15.0% |
| !!! | TGTGTTTTTAAAATATTTTG+CGG | - | chr4.4:48011267-48011286 | MS.gene78111:CDS | 15.0% |
| !!! | TTTAAATGGTTAGTTTTTAA+AGG | - | chr4.4:48012960-48012979 | MS.gene78111:intron | 15.0% |
| !!! | TTTGATAGTTAATTAACTAA+AGG | + | chr4.4:48012002-48012021 | None:intergenic | 15.0% |
| !! | ATTAATTGAGATCTACAAAA+AGG | - | chr4.4:48014214-48014233 | MS.gene78111:intron | 20.0% |
| !! | GAAAAAAAGATTGGAAAAAA+AGG | - | chr4.4:48011623-48011642 | MS.gene78111:intron | 20.0% |
| !! | TCTAGAAATAGAATATTATG+AGG | - | chr4.4:48011923-48011942 | MS.gene78111:intron | 20.0% |
| !! | TGAAAACAAATTGAAAGAAA+AGG | - | chr4.4:48013341-48013360 | MS.gene78111:CDS | 20.0% |
| !!! | ATTAATGTAGTTGATATTGT+TGG | + | chr4.4:48010248-48010267 | None:intergenic | 20.0% |
| !!! | CTATTTTGTAACACTTTTAA+AGG | + | chr4.4:48010786-48010805 | None:intergenic | 20.0% |
| !!! | TACTTTTGATTTTGAAGAAT+TGG | + | chr4.4:48014723-48014742 | None:intergenic | 20.0% |
| !!! | TCTCAATTAATTCTTTTTGT+AGG | + | chr4.4:48014205-48014224 | None:intergenic | 20.0% |
| !!! | TTAATGTTAAGGGTATATTT+GGG | - | chr4.4:48010537-48010556 | MS.gene78111:CDS | 20.0% |
| !!! | TTATGACATTATCTTGTTTT+TGG | - | chr4.4:48009835-48009854 | MS.gene78111:CDS | 20.0% |
| ! | AAAAAGATTGGAAAAAAAGG+TGG | - | chr4.4:48011626-48011645 | MS.gene78111:intron | 25.0% |
| ! | AACATTAACTATCGAGAAAA+GGG | + | chr4.4:48010525-48010544 | None:intergenic | 25.0% |
| ! | AATGCATGCATATACATATA+CGG | + | chr4.4:48012150-48012169 | None:intergenic | 25.0% |
| ! | AATGTAAAATTAGTGTACAC+CGG | - | chr4.4:48010488-48010507 | MS.gene78111:CDS | 25.0% |
| ! | ACATATATCTCACATTACAT+AGG | + | chr4.4:48010292-48010311 | None:intergenic | 25.0% |
| ! | AGAATGAAATGAGAAGAATA+TGG | - | chr4.4:48011778-48011797 | MS.gene78111:intron | 25.0% |
| ! | AGTAAAGTCGTAGTTTAAAA+AGG | - | chr4.4:48012861-48012880 | MS.gene78111:intron | 25.0% |
| ! | ATATATCTCACATTACATAG+GGG | + | chr4.4:48010290-48010309 | None:intergenic | 25.0% |
| ! | ATGAAAGAAACAAACATACT+TGG | + | chr4.4:48009738-48009757 | None:intergenic | 25.0% |
| ! | CAATAACAAAGTAGAAAATC+AGG | + | chr4.4:48012042-48012061 | None:intergenic | 25.0% |
| ! | CATATATCTCACATTACATA+GGG | + | chr4.4:48010291-48010310 | None:intergenic | 25.0% |
| ! | CTCTTGAGAATAATAACTTA+AGG | - | chr4.4:48013637-48013656 | MS.gene78111:intron | 25.0% |
| ! | CTTTCTTTGATTCATTATCT+AGG | + | chr4.4:48013869-48013888 | None:intergenic | 25.0% |
| ! | GTTATTATTCTCAAGAGTTA+AGG | + | chr4.4:48013634-48013653 | None:intergenic | 25.0% |
| ! | TAACATTAACTATCGAGAAA+AGG | + | chr4.4:48010526-48010545 | None:intergenic | 25.0% |
| ! | TAGAATACATAAACATCCAA+AGG | + | chr4.4:48012411-48012430 | None:intergenic | 25.0% |
| ! | TAGTTTAAAAAGGAAAGTGA+GGG | - | chr4.4:48012871-48012890 | MS.gene78111:intron | 25.0% |
| ! | TCTTCAAGTATGTAAATAAC+TGG | - | chr4.4:48011965-48011984 | MS.gene78111:intron | 25.0% |
| ! | TGATTCAAGAAAGGATAATT+TGG | + | chr4.4:48012124-48012143 | None:intergenic | 25.0% |
| ! | TGTAAAAATTAGCATTTGTG+TGG | - | chr4.4:48011244-48011263 | MS.gene78111:CDS | 25.0% |
| ! | TTCTAAACTTATTGCTTCTA+TGG | - | chr4.4:48012426-48012445 | MS.gene78111:intron | 25.0% |
| ! | TTCTCGATAGTTAATGTTAA+GGG | - | chr4.4:48010527-48010546 | MS.gene78111:CDS | 25.0% |
| ! | TTTCTCGATAGTTAATGTTA+AGG | - | chr4.4:48010526-48010545 | MS.gene78111:CDS | 25.0% |
| !! | AGAAATATGAGGTGTATTTT+TGG | - | chr4.4:48010060-48010079 | MS.gene78111:CDS | 25.0% |
| !! | ATCTCCTTTTGACATATTAA+TGG | + | chr4.4:48012099-48012118 | None:intergenic | 25.0% |
| !! | ATGTGTTAGTCATATTTTAC+TGG | - | chr4.4:48013000-48013019 | MS.gene78111:intron | 25.0% |
| !! | CTTTTCAATTTCTCAAATCT+TGG | - | chr4.4:48012782-48012801 | MS.gene78111:intron | 25.0% |
| !! | GTTAATGTTAAGGGTATATT+TGG | - | chr4.4:48010536-48010555 | MS.gene78111:CDS | 25.0% |
| !! | TAACTATGATTCTAGAAAAC+CGG | - | chr4.4:48012612-48012631 | MS.gene78111:intron | 25.0% |
| !! | TAATGTTAAGGGTATATTTG+GGG | - | chr4.4:48010538-48010557 | MS.gene78111:CDS | 25.0% |
| !!! | GACTTTTGATTTTGAAGAAT+TGG | + | chr4.4:48014786-48014805 | None:intergenic | 25.0% |
| !!! | TATCTTGTTTTTGGTAAAGT+GGG | - | chr4.4:48009844-48009863 | MS.gene78111:CDS | 25.0% |
| !!! | TATTTCTAGATACGAATAGA+AGG | + | chr4.4:48011913-48011932 | None:intergenic | 25.0% |
| !!! | TTATCTTGTTTTTGGTAAAG+TGG | - | chr4.4:48009843-48009862 | MS.gene78111:CDS | 25.0% |
| AAGAAAAGAAGAATACTCAG+AGG | + | chr4.4:48011890-48011909 | None:intergenic | 30.0% | |
| AAGAAGAGGAAAAAGAAGAA+GGG | + | chr4.4:48009542-48009561 | None:intergenic | 30.0% | |
| AAGAGAACGTTTCTGTTAAT+GGG | - | chr4.4:48009645-48009664 | MS.gene78111:CDS | 30.0% | |
| AAGGAGTGAATATGATGTAT+TGG | - | chr4.4:48013656-48013675 | MS.gene78111:intron | 30.0% | |
| AATGCTCATTTGCATATTCA+AGG | - | chr4.4:48013525-48013544 | MS.gene78111:intron | 30.0% | |
| AATTTCTCAAATCTTGGTCT+CGG | - | chr4.4:48012788-48012807 | MS.gene78111:intron | 30.0% | |
| ACACTTCAAAAACTCTTTCT+TGG | - | chr4.4:48010718-48010737 | MS.gene78111:CDS | 30.0% | |
| ACATTAACTATCGAGAAAAG+GGG | + | chr4.4:48010524-48010543 | None:intergenic | 30.0% | |
| ACCACTAATGTCCAATATAA+AGG | + | chr4.4:48011389-48011408 | None:intergenic | 30.0% | |
| ACTTGAAATCGATCTTACAA+AGG | - | chr4.4:48013296-48013315 | MS.gene78111:CDS | 30.0% | |
| AGAATCGAAATTGGGAAATT+GGG | + | chr4.4:48010878-48010897 | None:intergenic | 30.0% | |
| AGATGAAATGAACCGAAATT+CGG | - | chr4.4:48014385-48014404 | MS.gene78111:intron | 30.0% | |
| AGCTCCATTAATATGTCAAA+AGG | - | chr4.4:48012092-48012111 | MS.gene78111:intron | 30.0% | |
| ATCCAAAGGACAAAAACAAT+AGG | + | chr4.4:48012397-48012416 | None:intergenic | 30.0% | |
| ATGCTCATTTGCATATTCAA+GGG | - | chr4.4:48013526-48013545 | MS.gene78111:intron | 30.0% | |
| GAATCAAGTAACAACTAGTA+AGG | + | chr4.4:48011551-48011570 | None:intergenic | 30.0% | |
| GTAGTTTAAAAAGGAAAGTG+AGG | - | chr4.4:48012870-48012889 | MS.gene78111:intron | 30.0% | |
| GTTCATTTCATCTAGTGATT+TGG | + | chr4.4:48014378-48014397 | None:intergenic | 30.0% | |
| GTTCGTTGTAAAGAAATATG+AGG | - | chr4.4:48010049-48010068 | MS.gene78111:CDS | 30.0% | |
| GTTGATATTGTTGGAACTTA+GGG | + | chr4.4:48010239-48010258 | None:intergenic | 30.0% | |
| TAGTCCACATCACAAAATTA+AGG | + | chr4.4:48012207-48012226 | None:intergenic | 30.0% | |
| TATAAAAATCACCGAGATCA+AGG | + | chr4.4:48010595-48010614 | None:intergenic | 30.0% | |
| TCCTTTATATTGGACATTAG+TGG | - | chr4.4:48011385-48011404 | MS.gene78111:intron | 30.0% | |
| TGAATATGATGTATTGGAGA+AGG | - | chr4.4:48013662-48013681 | MS.gene78111:intron | 30.0% | |
| TGGATAATTCATCTTTGGTT+TGG | + | chr4.4:48013506-48013525 | None:intergenic | 30.0% | |
| TGTATATGCATGCATTGTTT+CGG | - | chr4.4:48012154-48012173 | MS.gene78111:intron | 30.0% | |
| TTAAATAAGCTCCTTGATCT+CGG | - | chr4.4:48010581-48010600 | MS.gene78111:CDS | 30.0% | |
| TTCTTTGAACAACGATTTAC+AGG | - | chr4.4:48014283-48014302 | MS.gene78111:intron | 30.0% | |
| TTGAATATGCAAATGAGCAT+TGG | + | chr4.4:48013526-48013545 | None:intergenic | 30.0% | |
| TTGATATTGTTGGAACTTAG+GGG | + | chr4.4:48010238-48010257 | None:intergenic | 30.0% | |
| TTGCAACAATAGAAACAGTA+AGG | - | chr4.4:48012577-48012596 | MS.gene78111:intron | 30.0% | |
| TTGCATTTCTTTGTTCTGTA+AGG | + | chr4.4:48014490-48014509 | None:intergenic | 30.0% | |
| ! | AGCATTGGATAATTCATCTT+TGG | + | chr4.4:48013511-48013530 | None:intergenic | 30.0% |
| ! | AGTTGATATTGTTGGAACTT+AGG | + | chr4.4:48010240-48010259 | None:intergenic | 30.0% |
| ! | GTTTTCGCTTGATTCATTTA+AGG | + | chr4.4:48013796-48013815 | None:intergenic | 30.0% |
| ! | TCCTCTAGAAACATCAAAAA+GGG | + | chr4.4:48012906-48012925 | None:intergenic | 30.0% |
| ! | TTCCTCTAGAAACATCAAAA+AGG | + | chr4.4:48012907-48012926 | None:intergenic | 30.0% |
| ! | TTTTAAACCTTCTCGTTCTT+TGG | + | chr4.4:48013841-48013860 | None:intergenic | 30.0% |
| ! | TTTTCCAATCTTTTTTTCCC+AGG | + | chr4.4:48011621-48011640 | None:intergenic | 30.0% |
| !! | AGTCATATTTTACTGGCTAA+TGG | - | chr4.4:48013035-48013054 | MS.gene78111:intron | 30.0% |
| !! | ATGAATGTTTTGTTCGATGA+CGG | - | chr4.4:48009877-48009896 | MS.gene78111:CDS | 30.0% |
| !! | GTTTAATGAAGGTGCATTTT+TGG | - | chr4.4:48010351-48010370 | MS.gene78111:CDS | 30.0% |
| !!! | ATCTTGTTTTTGGTAAAGTG+GGG | - | chr4.4:48009845-48009864 | MS.gene78111:CDS | 30.0% |
| AAACATTCGGATCATCACAT+TGG | + | chr4.4:48010208-48010227 | None:intergenic | 35.0% | |
| AAAGAAGAAGGGAAGAGAAA+TGG | + | chr4.4:48009531-48009550 | None:intergenic | 35.0% | |
| AAAGTTGAAGTCTGAAGAGA+AGG | - | chr4.4:48013698-48013717 | MS.gene78111:intron | 35.0% | |
| AAATGAATCAAGCGAAAACC+AGG | - | chr4.4:48013797-48013816 | MS.gene78111:intron | 35.0% | |
| AAATTGGATGAGATATGACC+TGG | - | chr4.4:48011600-48011619 | MS.gene78111:intron | 35.0% | |
| AACATTCGGATCATCACATT+GGG | + | chr4.4:48010207-48010226 | None:intergenic | 35.0% | |
| AACGTTCTCTTGTTGCATAT+TGG | + | chr4.4:48009636-48009655 | None:intergenic | 35.0% | |
| AACTTATTGCTTCTATGGAC+AGG | - | chr4.4:48012431-48012450 | MS.gene78111:intron | 35.0% | |
| AAGAAGAAGGGAAGAGAAAT+GGG | + | chr4.4:48009530-48009549 | None:intergenic | 35.0% | |
| AAGACTAGAATTTCTATGCG+CGG | + | chr4.4:48010834-48010853 | None:intergenic | 35.0% | |
| AAGAGAAATGGGTATAGAAG+CGG | + | chr4.4:48009519-48009538 | None:intergenic | 35.0% | |
| AATCATATCTTCTGGTCTGT+TGG | - | chr4.4:48012512-48012531 | MS.gene78111:intron | 35.0% | |
| AATGTCTGAAAGGGAGATAT+CGG | + | chr4.4:48011070-48011089 | None:intergenic | 35.0% | |
| AATTCAGGTACCTCTTTGAT+TGG | - | chr4.4:48011123-48011142 | MS.gene78111:CDS | 35.0% | |
| AATTGGATGAGATATGACCT+GGG | - | chr4.4:48011601-48011620 | MS.gene78111:intron | 35.0% | |
| ACAAAGAAATGCAAGCAAAG+AGG | - | chr4.4:48014496-48014515 | MS.gene78111:intron | 35.0% | |
| ACATCACAAAATTAAGGACG+TGG | + | chr4.4:48012201-48012220 | None:intergenic | 35.0% | |
| ACTAGAAGGAAAACATTCCT+TGG | - | chr4.4:48013581-48013600 | MS.gene78111:intron | 35.0% | |
| ACTCCTCTGATACTTTACTT+AGG | - | chr4.4:48010748-48010767 | MS.gene78111:CDS | 35.0% | |
| ACTTTCTTCTGTAAGGAGAA+TGG | + | chr4.4:48012302-48012321 | None:intergenic | 35.0% | |
| AGATTGGAAAAAAAGGTGGT+AGG | - | chr4.4:48011630-48011649 | MS.gene78111:intron | 35.0% | |
| ATACCAGAGGATAAAAAGCT+AGG | - | chr4.4:48012331-48012350 | MS.gene78111:intron | 35.0% | |
| ATACGGTCATGATTCAAGAA+AGG | + | chr4.4:48012133-48012152 | None:intergenic | 35.0% | |
| ATCATATCTTCTGGTCTGTT+GGG | - | chr4.4:48012513-48012532 | MS.gene78111:intron | 35.0% | |
| ATGACCTGGGAAAAAAAGAT+TGG | - | chr4.4:48011614-48011633 | MS.gene78111:intron | 35.0% | |
| ATGATGAGACAATGTCTGAA+AGG | + | chr4.4:48011080-48011099 | None:intergenic | 35.0% | |
| CAAGAAGAGGAAAAAGAAGA+AGG | + | chr4.4:48009543-48009562 | None:intergenic | 35.0% | |
| CAAGAGAACGTTTCTGTTAA+TGG | - | chr4.4:48009644-48009663 | MS.gene78111:CDS | 35.0% | |
| CAAGATTCTCTTGAGTAACT+TGG | + | chr4.4:48013914-48013933 | None:intergenic | 35.0% | |
| CAATTTCGATTCTCCATTTC+CGG | - | chr4.4:48010885-48010904 | MS.gene78111:CDS | 35.0% | |
| CATAACCTCATTACTAGACT+TGG | - | chr4.4:48014542-48014561 | MS.gene78111:intron | 35.0% | |
| CATCATGTAACCAATCAAAG+AGG | + | chr4.4:48011136-48011155 | None:intergenic | 35.0% | |
| CTAACCAAGTGTCATAAAAC+CGG | - | chr4.4:48009921-48009940 | MS.gene78111:CDS | 35.0% | |
| GAAGAAATTGGAAGAGGAAT+TGG | - | chr4.4:48014595-48014614 | MS.gene78111:intron | 35.0% | |
| GAAGATGAAGACTGAAAAAG+AGG | + | chr4.4:48010923-48010942 | None:intergenic | 35.0% | |
| GAGAATCGAAATTGGGAAAT+TGG | + | chr4.4:48010879-48010898 | None:intergenic | 35.0% | |
| GATTTAACCAAAGAACGAGA+AGG | - | chr4.4:48013831-48013850 | MS.gene78111:intron | 35.0% | |
| GCACAAACATTTCAGATTGA+CGG | - | chr4.4:48012682-48012701 | MS.gene78111:intron | 35.0% | |
| GGAAATGGAGAATCGAAATT+GGG | + | chr4.4:48010886-48010905 | None:intergenic | 35.0% | |
| GGAATTGGAATCATATCTTC+TGG | - | chr4.4:48012504-48012523 | MS.gene78111:intron | 35.0% | |
| GTGTGTAATGAGTCTCAAAT+TGG | - | chr4.4:48011584-48011603 | MS.gene78111:intron | 35.0% | |
| GTTTCCCTACCAATTCAAAA+CGG | - | chr4.4:48011857-48011876 | MS.gene78111:CDS | 35.0% | |
| TAAGGAGCTGATAACAGTAA+AGG | - | chr4.4:48014103-48014122 | MS.gene78111:intron | 35.0% | |
| TCAATCACCAACATAGAGTA+TGG | + | chr4.4:48011749-48011768 | None:intergenic | 35.0% | |
| TCCACTAGGAAAAATCCATT+GGG | + | chr4.4:48011484-48011503 | None:intergenic | 35.0% | |
| TGAAAGAATTGCTTCAACAG+CGG | + | chr4.4:48009712-48009731 | None:intergenic | 35.0% | |
| TGAAATACTGAAAAGCCAAG+AGG | - | chr4.4:48013557-48013576 | MS.gene78111:intron | 35.0% | |
| TGATGAGACAATGTCTGAAA+GGG | + | chr4.4:48011079-48011098 | None:intergenic | 35.0% | |
| TGTGTCAGTGTCCTTTATAT+TGG | - | chr4.4:48011375-48011394 | MS.gene78111:intron | 35.0% | |
| TTAACCACCATACTCTATGT+TGG | - | chr4.4:48011739-48011758 | MS.gene78111:intron | 35.0% | |
| TTCCACTAGGAAAAATCCAT+TGG | + | chr4.4:48011485-48011504 | None:intergenic | 35.0% | |
| TTGAAAGGATCACCGAATTT+CGG | + | chr4.4:48014400-48014419 | None:intergenic | 35.0% | |
| TTTCCCTACCAATTCAAAAC+GGG | - | chr4.4:48011858-48011877 | MS.gene78111:CDS | 35.0% | |
| TTTGAAGGAGCAACTATTGA+AGG | - | chr4.4:48014307-48014326 | MS.gene78111:intron | 35.0% | |
| TTTGGTCGCATTATAAGTGT+GGG | - | chr4.4:48010078-48010097 | MS.gene78111:CDS | 35.0% | |
| ! | AAACGTTCCATGTGATGTTT+TGG | - | chr4.4:48011709-48011728 | MS.gene78111:intron | 35.0% |
| ! | AATCCGGTTTTTGTAAGGTT+GGG | - | chr4.4:48011668-48011687 | MS.gene78111:intron | 35.0% |
| ! | ACGTCCTTAATTTTGTGATG+TGG | - | chr4.4:48012200-48012219 | MS.gene78111:intron | 35.0% |
| ! | ACTAGTTGTTACTTGATTCC+TGG | - | chr4.4:48011552-48011571 | MS.gene78111:intron | 35.0% |
| ! | ATGCCTAAGTAAAGTATCAG+AGG | + | chr4.4:48010754-48010773 | None:intergenic | 35.0% |
| ! | CTGTTTAGTGAAGTATCACT+TGG | - | chr4.4:48012247-48012266 | MS.gene78111:intron | 35.0% |
| ! | CTTACAATCCGGTTTTTGTA+AGG | - | chr4.4:48011663-48011682 | MS.gene78111:intron | 35.0% |
| ! | GAACCTCTTTCTCATTTTCA+AGG | + | chr4.4:48014457-48014476 | None:intergenic | 35.0% |
| ! | GCAGTGTTGAATTTGAGAAA+GGG | + | chr4.4:48009684-48009703 | None:intergenic | 35.0% |
| ! | GTGATGATCCGAATGTTTTA+AGG | - | chr4.4:48010210-48010229 | MS.gene78111:CDS | 35.0% |
| ! | TAGCCTTGAAAATGAGAAAG+AGG | - | chr4.4:48014451-48014470 | MS.gene78111:intron | 35.0% |
| ! | TCTCTTCAGACTTCAACTTT+TGG | + | chr4.4:48013698-48013717 | None:intergenic | 35.0% |
| ! | TCTTTGTTCTGTAAGGTACT+TGG | + | chr4.4:48014483-48014502 | None:intergenic | 35.0% |
| ! | TGAATTTAGTTCCATCACCA+AGG | + | chr4.4:48013601-48013620 | None:intergenic | 35.0% |
| ! | TTTTGGTCGCATTATAAGTG+TGG | - | chr4.4:48010077-48010096 | MS.gene78111:CDS | 35.0% |
| !! | AAACCCGTTTTGAATTGGTA+GGG | + | chr4.4:48011864-48011883 | None:intergenic | 35.0% |
| !! | TTCATCTTTGGTTTGGTCAT+AGG | + | chr4.4:48013499-48013518 | None:intergenic | 35.0% |
| !!! | TCCCTTTTTGATGTTTCTAG+AGG | - | chr4.4:48012902-48012921 | MS.gene78111:intron | 35.0% |
| !!! | TCTTGTTTTTGGTAAAGTGG+GGG | - | chr4.4:48009846-48009865 | MS.gene78111:CDS | 35.0% |
| !!! | TGCCTATTGTTTTTGTCCTT+TGG | - | chr4.4:48012392-48012411 | MS.gene78111:intron | 35.0% |
| AAAAGCCAAGAGGAACTAGA+AGG | - | chr4.4:48013567-48013586 | MS.gene78111:intron | 40.0% | |
| AAAGAGGCGAATTATGAGAC+CGG | + | chr4.4:48010907-48010926 | None:intergenic | 40.0% | |
| AAAGGCCATACATGTCTAAC+CGG | + | chr4.4:48012634-48012653 | None:intergenic | 40.0% | |
| AACTGTTGAAATGGATCTCG+AGG | - | chr4.4:48014346-48014365 | MS.gene78111:intron | 40.0% | |
| AAGAAATGACTCTGCTGAAC+TGG | - | chr4.4:48013941-48013960 | MS.gene78111:intron | 40.0% | |
| AAGAAGTCGTTGTAAGTGCA+CGG | - | chr4.4:48014849-48014868 | MS.gene78111:CDS | 40.0% | |
| AAGTGAAGAGATTGTGCACA+GGG | - | chr4.4:48011520-48011539 | MS.gene78111:intron | 40.0% | |
| ACAAGCCAAACTACTTGGAA+AGG | - | chr4.4:48013149-48013168 | MS.gene78111:intron | 40.0% | |
| ACAGATGAGCAACAAACTGA+AGG | - | chr4.4:48013059-48013078 | MS.gene78111:intron | 40.0% | |
| ACATCAGCATCCACAAATTC+AGG | - | chr4.4:48011108-48011127 | MS.gene78111:CDS | 40.0% | |
| ACGGTCTTAGAATTTGTGGT+TGG | - | chr4.4:48009896-48009915 | MS.gene78111:CDS | 40.0% | |
| ACTAAGTCATGTGTACCCAA+TGG | - | chr4.4:48011466-48011485 | MS.gene78111:intron | 40.0% | |
| ACTGAAGGAAAAAGAAGAGC+AGG | - | chr4.4:48013074-48013093 | MS.gene78111:intron | 40.0% | |
| AGAAGAGAGACATTCCTCAA+AGG | + | chr4.4:48012652-48012671 | None:intergenic | 40.0% | |
| AGACTAGAATTTCTATGCGC+GGG | + | chr4.4:48010833-48010852 | None:intergenic | 40.0% | |
| AGAGACACAAAGGAAGTAGA+TGG | + | chr4.4:48012477-48012496 | None:intergenic | 40.0% | |
| AGGAAAACATTCCTTGGTGA+TGG | - | chr4.4:48013587-48013606 | MS.gene78111:intron | 40.0% | |
| ATCACCAACATAGAGTATGG+TGG | + | chr4.4:48011746-48011765 | None:intergenic | 40.0% | |
| ATGTCTGAAAGGGAGATATC+GGG | + | chr4.4:48011069-48011088 | None:intergenic | 40.0% | |
| CAAAACCTTAGCATCCAAAG+TGG | + | chr4.4:48013724-48013743 | None:intergenic | 40.0% | |
| CAAACTACTTGGAAAGGCAA+AGG | - | chr4.4:48013155-48013174 | MS.gene78111:intron | 40.0% | |
| CAACATGTTCTTTGTCCTTG+AGG | + | chr4.4:48013416-48013435 | None:intergenic | 40.0% | |
| CAGAAAAGGAGTTGGAATTG+AGG | - | chr4.4:48013460-48013479 | MS.gene78111:intron | 40.0% | |
| CGAGGCAGAAAAATTGACTA+AGG | - | chr4.4:48014085-48014104 | MS.gene78111:intron | 40.0% | |
| CGGAAATGGAGAATCGAAAT+TGG | + | chr4.4:48010887-48010906 | None:intergenic | 40.0% | |
| CGGTCTTAGAATTTGTGGTT+GGG | - | chr4.4:48009897-48009916 | MS.gene78111:CDS | 40.0% | |
| CTATGAGTGTCATGCTTCTT+AGG | + | chr4.4:48010626-48010645 | None:intergenic | 40.0% | |
| CTGTAGCGAATCCTTAACTT+CGG | + | chr4.4:48014042-48014061 | None:intergenic | 40.0% | |
| CTTTGCCAAGTCTAGTAATG+AGG | + | chr4.4:48014550-48014569 | None:intergenic | 40.0% | |
| CTTTGCCTTTCCAAGTAGTT+TGG | + | chr4.4:48013157-48013176 | None:intergenic | 40.0% | |
| GAAAACCGGTTAGACATGTA+TGG | - | chr4.4:48012626-48012645 | MS.gene78111:intron | 40.0% | |
| GAACCCAACCTTACAAAAAC+CGG | + | chr4.4:48011674-48011693 | None:intergenic | 40.0% | |
| GAATTCATCCCTTGCAGAAA+AGG | - | chr4.4:48013446-48013465 | MS.gene78111:intron | 40.0% | |
| GAGTGACTCGTATACTTATG+TGG | - | chr4.4:48010151-48010170 | MS.gene78111:CDS | 40.0% | |
| GCTTCTCTCATCTTACAATC+CGG | - | chr4.4:48011652-48011671 | MS.gene78111:intron | 40.0% | |
| GGACACAACTAACAAAGCAA+GGG | + | chr4.4:48012180-48012199 | None:intergenic | 40.0% | |
| GTAGATGGTTTCTCCATTTC+AGG | + | chr4.4:48012462-48012481 | None:intergenic | 40.0% | |
| GTCACGAAGAACTGTTGAAA+TGG | - | chr4.4:48014337-48014356 | MS.gene78111:intron | 40.0% | |
| GTGTCTCTTCTGAATGGAAT+TGG | - | chr4.4:48012489-48012508 | MS.gene78111:intron | 40.0% | |
| TAGGGGAGCCTTAAAACATT+CGG | + | chr4.4:48010221-48010240 | None:intergenic | 40.0% | |
| TCACCTCACTTTCTTCTGTA+AGG | + | chr4.4:48012309-48012328 | None:intergenic | 40.0% | |
| TCATATCTTCTGGTCTGTTG+GGG | - | chr4.4:48012514-48012533 | MS.gene78111:intron | 40.0% | |
| TCCATTCAGAAGAGACACAA+AGG | + | chr4.4:48012487-48012506 | None:intergenic | 40.0% | |
| TCCTTTGTGTCTCTTCTGAA+TGG | - | chr4.4:48012483-48012502 | MS.gene78111:intron | 40.0% | |
| TCTCCTTACAGAAGAAAGTG+AGG | - | chr4.4:48012303-48012322 | MS.gene78111:intron | 40.0% | |
| TGACAGTGTCATACAAGTCT+CGG | + | chr4.4:48012738-48012757 | None:intergenic | 40.0% | |
| TGCACTTACAACGACTTCTT+TGG | + | chr4.4:48014849-48014868 | None:intergenic | 40.0% | |
| TGGACACAACTAACAAAGCA+AGG | + | chr4.4:48012181-48012200 | None:intergenic | 40.0% | |
| TGTAGTCGTTAGTTCATGAG+AGG | + | chr4.4:48014165-48014184 | None:intergenic | 40.0% | |
| TTAAATCAGCGATGACAACC+TGG | + | chr4.4:48013818-48013837 | None:intergenic | 40.0% | |
| TTAGACATGTATGGCCTTTG+AGG | - | chr4.4:48012635-48012654 | MS.gene78111:intron | 40.0% | |
| ! | AGTTGTTACTTGATTCCTGG+AGG | - | chr4.4:48011555-48011574 | MS.gene78111:intron | 40.0% |
| ! | ATTCCAACTCCTTTTCTGCA+AGG | + | chr4.4:48013458-48013477 | None:intergenic | 40.0% |
| ! | ATTCTTTTTGTAGGCCATCG+CGG | + | chr4.4:48014196-48014215 | None:intergenic | 40.0% |
| ! | CAACGATTTACAGGCTTTGA+AGG | - | chr4.4:48014292-48014311 | MS.gene78111:intron | 40.0% |
| ! | CAATCCGGTTTTTGTAAGGT+TGG | - | chr4.4:48011667-48011686 | MS.gene78111:intron | 40.0% |
| ! | CCTTTCAAGTGAACTAGAAG+AGG | - | chr4.4:48014412-48014431 | MS.gene78111:intron | 40.0% |
| ! | CTAAGAAGCATGACACTCAT+AGG | - | chr4.4:48010624-48010643 | MS.gene78111:CDS | 40.0% |
| ! | GATGACGGTCTTAGAATTTG+TGG | - | chr4.4:48009892-48009911 | MS.gene78111:CDS | 40.0% |
| ! | GGCAGTGTTGAATTTGAGAA+AGG | + | chr4.4:48009685-48009704 | None:intergenic | 40.0% |
| ! | GGTTTTTGTAAGGTTGGGTT+CGG | - | chr4.4:48011673-48011692 | MS.gene78111:intron | 40.0% |
| ! | TTCCAACTCCTTTTCTGCAA+GGG | + | chr4.4:48013457-48013476 | None:intergenic | 40.0% |
| !! | AAAGAGTACTGTCACCAGTT+TGG | - | chr4.4:48013215-48013234 | MS.gene78111:intron | 40.0% |
| !! | AAGAGTACTGTCACCAGTTT+GGG | - | chr4.4:48013216-48013235 | MS.gene78111:intron | 40.0% |
| !! | ACCCAATGGATTTTTCCTAG+TGG | - | chr4.4:48011480-48011499 | MS.gene78111:intron | 40.0% |
| !! | ACTTGATGATGCAAAACTCG+AGG | - | chr4.4:48014067-48014086 | MS.gene78111:intron | 40.0% |
| !! | AGTCACATCAGAGGTTTTGA+AGG | - | chr4.4:48014241-48014260 | MS.gene78111:intron | 40.0% |
| !! | CAAACCGGTTTTATGACACT+TGG | + | chr4.4:48009928-48009947 | None:intergenic | 40.0% |
| !! | CAAAGAGGTACCTGAATTTG+TGG | + | chr4.4:48011121-48011140 | None:intergenic | 40.0% |
| !! | CCTCTTCTAGTTCACTTGAA+AGG | + | chr4.4:48014415-48014434 | None:intergenic | 40.0% |
| !! | CGGTTTTATGACACTTGGTT+AGG | + | chr4.4:48009923-48009942 | None:intergenic | 40.0% |
| !! | GAAACCCGTTTTGAATTGGT+AGG | + | chr4.4:48011865-48011884 | None:intergenic | 40.0% |
| !! | GGTTGAAACCCGTTTTGAAT+TGG | + | chr4.4:48011869-48011888 | None:intergenic | 40.0% |
| !! | TAAAACCGGTTTGTGATGTG+AGG | - | chr4.4:48009935-48009954 | MS.gene78111:CDS | 40.0% |
| !!! | GTTTTCCTTCTAGTTCCTCT+TGG | + | chr4.4:48013575-48013594 | None:intergenic | 40.0% |
| !!! | TTTTAGCTCCTTTCCCAAAC+TGG | + | chr4.4:48013232-48013251 | None:intergenic | 40.0% |
| AAAGGCTGAAGTCACATCAG+AGG | - | chr4.4:48014232-48014251 | MS.gene78111:intron | 45.0% | |
| AAGCAACCACACATGTGAGT+TGG | + | chr4.4:48010180-48010199 | None:intergenic | 45.0% | |
| AAGTGAGGTGAAGATACCAG+AGG | - | chr4.4:48012318-48012337 | MS.gene78111:intron | 45.0% | |
| AATTGCTTCAACAGCGGCAT+CGG | + | chr4.4:48009706-48009725 | None:intergenic | 45.0% | |
| ACACCCCCTCTGTTAATAAG+TGG | + | chr4.4:48009968-48009987 | None:intergenic | 45.0% | |
| ACCCCCTCTGTTAATAAGTG+GGG | + | chr4.4:48009966-48009985 | None:intergenic | 45.0% | |
| ACGAGAGCAACATACCACAA+CGG | + | chr4.4:48009601-48009620 | None:intergenic | 45.0% | |
| AGAGAGAGTTTAGAGAGCAG+AGG | - | chr4.4:48014572-48014591 | MS.gene78111:intron | 45.0% | |
| AGAGAGCAGAGGGAAGAAAT+TGG | - | chr4.4:48014583-48014602 | MS.gene78111:intron | 45.0% | |
| AGAGGATAAAAAGCTAGGCG+AGG | - | chr4.4:48012336-48012355 | MS.gene78111:intron | 45.0% | |
| AGCATGACACTCATAGGTTC+AGG | - | chr4.4:48010630-48010649 | MS.gene78111:CDS | 45.0% | |
| ATCCCTTGCAGAAAAGGAGT+TGG | - | chr4.4:48013452-48013471 | MS.gene78111:intron | 45.0% | |
| CAACCGCAATATTTCACCCT+TGG | + | chr4.4:48014627-48014646 | None:intergenic | 45.0% | |
| CAAGTGAAGAGATTGTGCAC+AGG | - | chr4.4:48011519-48011538 | MS.gene78111:intron | 45.0% | |
| CACCCCCTCTGTTAATAAGT+GGG | + | chr4.4:48009967-48009986 | None:intergenic | 45.0% | |
| CAGAGGGAAGAAATTGGAAG+AGG | - | chr4.4:48014589-48014608 | MS.gene78111:intron | 45.0% | |
| CATATCTTCTGGTCTGTTGG+GGG | - | chr4.4:48012515-48012534 | MS.gene78111:intron | 45.0% | |
| CATGACACTCATAGGTTCAG+GGG | - | chr4.4:48010632-48010651 | MS.gene78111:CDS | 45.0% | |
| CCAATACATGCCAGACACTT+AGG | + | chr4.4:48012712-48012731 | None:intergenic | 45.0% | |
| CCTAAGTGTCTGGCATGTAT+TGG | - | chr4.4:48012709-48012728 | MS.gene78111:intron | 45.0% | |
| CTGCCAAGGGTGAAATATTG+CGG | - | chr4.4:48014621-48014640 | MS.gene78111:intron | 45.0% | |
| GAAACGTTGTCTACGAACAC+GGG | + | chr4.4:48010953-48010972 | None:intergenic | 45.0% | |
| GACAGTGTCATACAAGTCTC+GGG | + | chr4.4:48012737-48012756 | None:intergenic | 45.0% | |
| GAGAGAGTTTAGAGAGCAGA+GGG | - | chr4.4:48014573-48014592 | MS.gene78111:intron | 45.0% | |
| GAGATATCGGGACTAAAGAG+AGG | + | chr4.4:48011057-48011076 | None:intergenic | 45.0% | |
| GAGGAACAAGCCAAACTACT+TGG | - | chr4.4:48013144-48013163 | MS.gene78111:intron | 45.0% | |
| GCATGACACTCATAGGTTCA+GGG | - | chr4.4:48010631-48010650 | MS.gene78111:CDS | 45.0% | |
| GCGAATTATGAGACCGGAAA+TGG | + | chr4.4:48010901-48010920 | None:intergenic | 45.0% | |
| GCTGTGTCCAAAACATCACA+TGG | + | chr4.4:48011719-48011738 | None:intergenic | 45.0% | |
| GGAAACGTTGTCTACGAACA+CGG | + | chr4.4:48010954-48010973 | None:intergenic | 45.0% | |
| GGAGCAACTATTGAAGGACA+AGG | - | chr4.4:48014313-48014332 | MS.gene78111:intron | 45.0% | |
| GGTACTTTGCAGCTCTTCTT+CGG | + | chr4.4:48014144-48014163 | None:intergenic | 45.0% | |
| GTGCAAAGATCATGAGCTTC+AGG | - | chr4.4:48013992-48014011 | MS.gene78111:intron | 45.0% | |
| GTGCACAATCTCTTCACTTG+TGG | + | chr4.4:48011519-48011538 | None:intergenic | 45.0% | |
| GTTACTTGATTCCTGGAGGT+GGG | - | chr4.4:48011559-48011578 | MS.gene78111:intron | 45.0% | |
| GTTGAAGTTATCGAACGAGC+AGG | - | chr4.4:48013122-48013141 | MS.gene78111:intron | 45.0% | |
| TACTGTCACCAGTTTGGGAA+AGG | - | chr4.4:48013221-48013240 | MS.gene78111:intron | 45.0% | |
| TCTATGGGAACGACAAGAAG+AGG | + | chr4.4:48009556-48009575 | None:intergenic | 45.0% | |
| TCTGCTTAGTGAAGACCTCA+AGG | - | chr4.4:48013398-48013417 | MS.gene78111:CDS | 45.0% | |
| TGCCCCCACTTATTAACAGA+GGG | - | chr4.4:48009960-48009979 | MS.gene78111:CDS | 45.0% | |
| TGTTGAAATGGATCTCGAGG+AGG | - | chr4.4:48014349-48014368 | MS.gene78111:intron | 45.0% | |
| TTACTTGATTCCTGGAGGTG+GGG | - | chr4.4:48011560-48011579 | MS.gene78111:intron | 45.0% | |
| ! | GGGGTGTCTATCTCGTTATA+GGG | - | chr4.4:48009981-48010000 | MS.gene78111:CDS | 45.0% |
| ! | TCAAATCTTGGTCTCGGTGT+TGG | - | chr4.4:48012794-48012813 | MS.gene78111:intron | 45.0% |
| ! | TGTTACTTGATTCCTGGAGG+TGG | - | chr4.4:48011558-48011577 | MS.gene78111:intron | 45.0% |
| ! | TTCTTTTTGTAGGCCATCGC+GGG | + | chr4.4:48014195-48014214 | None:intergenic | 45.0% |
| !! | TCGCCTAGCTTTTTATCCTC+TGG | + | chr4.4:48012337-48012356 | None:intergenic | 45.0% |
| !!! | ATTGTTTTATTTTTTATTTA+TGG | - | chr4.4:48009784-48009803 | MS.gene78111:CDS | 5.0% |
| AACATACCACAACGGGAGCA+CGG | + | chr4.4:48009593-48009612 | None:intergenic | 50.0% | |
| AAGAGCAGGTCGTTTCGTTG+AGG | - | chr4.4:48013088-48013107 | MS.gene78111:intron | 50.0% | |
| ACAACGTTTCCCTTCCTCTC+GGG | - | chr4.4:48010963-48010982 | MS.gene78111:CDS | 50.0% | |
| ACTACACTTGAAACCCGCGA+TGG | - | chr4.4:48014179-48014198 | MS.gene78111:intron | 50.0% | |
| ATCTGAGCTCGCCGAAGTTA+AGG | - | chr4.4:48014028-48014047 | MS.gene78111:intron | 50.0% | |
| ATGGGTATAGAAGCGGAGAG+TGG | + | chr4.4:48009512-48009531 | None:intergenic | 50.0% | |
| CCCCCACTTATTAACAGAGG+GGG | - | chr4.4:48009962-48009981 | MS.gene78111:CDS | 50.0% | |
| CCCCCTCTGTTAATAAGTGG+GGG | + | chr4.4:48009965-48009984 | None:intergenic | 50.0% | |
| CGAGAGCAACATACCACAAC+GGG | + | chr4.4:48009600-48009619 | None:intergenic | 50.0% | |
| CTGCCCCCACTTATTAACAG+AGG | - | chr4.4:48009959-48009978 | MS.gene78111:CDS | 50.0% | |
| GAAAAGGGGATATGCACAGC+CGG | + | chr4.4:48010510-48010529 | None:intergenic | 50.0% | |
| GAAGTTATCGAACGAGCAGG+AGG | - | chr4.4:48013125-48013144 | MS.gene78111:intron | 50.0% | |
| GACAACGTTTCCCTTCCTCT+CGG | - | chr4.4:48010962-48010981 | MS.gene78111:CDS | 50.0% | |
| GCAGTCCTCACATCACAAAC+CGG | + | chr4.4:48009943-48009962 | None:intergenic | 50.0% | |
| GCCCCCACTTATTAACAGAG+GGG | - | chr4.4:48009961-48009980 | MS.gene78111:CDS | 50.0% | |
| GGACTTAGCATGCTTCCACT+AGG | + | chr4.4:48011498-48011517 | None:intergenic | 50.0% | |
| GTCTGAAGAGAAGGCCACTT+TGG | - | chr4.4:48013707-48013726 | MS.gene78111:intron | 50.0% | |
| TACGTCGTCTGCGAATAGAG+CGG | + | chr4.4:48011011-48011030 | None:intergenic | 50.0% | |
| TGGTGTCCAACTCACATGTG+TGG | - | chr4.4:48010171-48010190 | MS.gene78111:CDS | 50.0% | |
| ! | AGAGGAATTGGCTTCTGCCA+AGG | - | chr4.4:48014607-48014626 | MS.gene78111:intron | 50.0% |
| ! | ATGTCTGGCTTACGTTGGTG+TGG | - | chr4.4:48010662-48010681 | MS.gene78111:CDS | 50.0% |
| ! | GAAGGCCACTTTGGATGCTA+AGG | - | chr4.4:48013716-48013735 | MS.gene78111:intron | 50.0% |
| ! | GAGCTGCTTGGTGGTTCTAT+GGG | + | chr4.4:48009571-48009590 | None:intergenic | 50.0% |
| ! | GAGGAATTGGCTTCTGCCAA+GGG | - | chr4.4:48014608-48014627 | MS.gene78111:intron | 50.0% |
| ! | TGTCTGGCTTACGTTGGTGT+GGG | - | chr4.4:48010663-48010682 | MS.gene78111:CDS | 50.0% |
| !! | GGGGGTGTCTATCTCGTTAT+AGG | - | chr4.4:48009980-48009999 | MS.gene78111:CDS | 50.0% |
| !! | GTGGGCTAGAAGTCTTACGT+TGG | - | chr4.4:48010096-48010115 | MS.gene78111:CDS | 50.0% |
| ATTACACACTCCCCACCTCC+AGG | + | chr4.4:48011573-48011592 | None:intergenic | 55.0% | |
| CCAACGTAAGCCAGACATGC+AGG | + | chr4.4:48010660-48010679 | None:intergenic | 55.0% | |
| GAACAGAGTCCCGAGAGGAA+GGG | + | chr4.4:48010975-48010994 | None:intergenic | 55.0% | |
| GATCCGACACGAGACAGACA+CGG | + | chr4.4:48011416-48011435 | None:intergenic | 55.0% | |
| TCTCCGTGTCTGTCTCGTGT+CGG | - | chr4.4:48011410-48011429 | MS.gene78111:intron | 55.0% | |
| TGACGGTGTGCCTAAGTGTC+TGG | - | chr4.4:48012699-48012718 | MS.gene78111:intron | 55.0% | |
| TGGACAGGCAGCACCTGAAA+TGG | - | chr4.4:48012446-48012465 | MS.gene78111:intron | 55.0% | |
| TGGCTTACGTTGGTGTGGGT+TGG | - | chr4.4:48010667-48010686 | MS.gene78111:CDS | 55.0% | |
| ! | CCTGCATGTCTGGCTTACGT+TGG | - | chr4.4:48010657-48010676 | MS.gene78111:CDS | 55.0% |
| ! | GGAGCTGCTTGGTGGTTCTA+TGG | + | chr4.4:48009572-48009591 | None:intergenic | 55.0% |
| !! | CTCGGTGTTGGTGTCGTGTT+CGG | - | chr4.4:48012806-48012825 | MS.gene78111:intron | 55.0% |
| !! | TTCAGGGGTACCTGCATGTC+TGG | - | chr4.4:48010647-48010666 | MS.gene78111:CDS | 55.0% |
| ACTGCGAACAGAGTCCCGAG+AGG | + | chr4.4:48010980-48010999 | None:intergenic | 60.0% | |
| CGAACAGAGTCCCGAGAGGA+AGG | + | chr4.4:48010976-48010995 | None:intergenic | 60.0% | |
| ! | AACGGGAGCACGGAGCTGCT+TGG | + | chr4.4:48009583-48009602 | None:intergenic | 65.0% |
| GCAGCTCCGTGCTCCCGTTG+TGG | - | chr4.4:48009584-48009603 | MS.gene78111:CDS | 70.0% | |
| ! | GGGAGCACGGAGCTGCTTGG+TGG | + | chr4.4:48009580-48009599 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 48009468 | 48014907 | 48009468 | ID=MS.gene78111 |
| chr4.4 | mRNA | 48009468 | 48014907 | 48009468 | ID=MS.gene78111.t1;Parent=MS.gene78111 |
| chr4.4 | exon | 48014637 | 48014907 | 48014637 | ID=MS.gene78111.t1.exon1;Parent=MS.gene78111.t1 |
| chr4.4 | CDS | 48014637 | 48014907 | 48014637 | ID=cds.MS.gene78111.t1;Parent=MS.gene78111.t1 |
| chr4.4 | exon | 48013246 | 48013443 | 48013246 | ID=MS.gene78111.t1.exon2;Parent=MS.gene78111.t1 |
| chr4.4 | CDS | 48013246 | 48013443 | 48013246 | ID=cds.MS.gene78111.t1;Parent=MS.gene78111.t1 |
| chr4.4 | exon | 48012018 | 48012061 | 48012018 | ID=MS.gene78111.t1.exon3;Parent=MS.gene78111.t1 |
| chr4.4 | CDS | 48012018 | 48012061 | 48012018 | ID=cds.MS.gene78111.t1;Parent=MS.gene78111.t1 |
| chr4.4 | exon | 48011782 | 48011922 | 48011782 | ID=MS.gene78111.t1.exon4;Parent=MS.gene78111.t1 |
| chr4.4 | CDS | 48011782 | 48011922 | 48011782 | ID=cds.MS.gene78111.t1;Parent=MS.gene78111.t1 |
| chr4.4 | exon | 48009468 | 48011312 | 48009468 | ID=MS.gene78111.t1.exon5;Parent=MS.gene78111.t1 |
| chr4.4 | CDS | 48009468 | 48011312 | 48009468 | ID=cds.MS.gene78111.t1;Parent=MS.gene78111.t1 |
| Gene Sequence |
| Protein sequence |
