Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038254.t1 | XP_003617340.1 | 100 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 9.30E-146 | 526.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038254.t1 | Q6PGS5 | 30.1 | 219 | 139 | 7 | 61 | 273 | 38 | 248 | 2.2e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038254.t1 | G7K374 | 100.0 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 6.7e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55688 | MS.gene038254 | PPI |
| MS.gene05093 | MS.gene038254 | PPI |
| MS.gene049621 | MS.gene038254 | PPI |
| MS.gene008402 | MS.gene038254 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038254.t1 | MTR_5g090550 | 100.000 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 0.0 | 561 |
| MS.gene038254.t1 | MTR_3g450410 | 82.117 | 274 | 49 | 0 | 1 | 274 | 1 | 274 | 3.50e-173 | 479 |
| MS.gene038254.t1 | MTR_3g063070 | 49.583 | 240 | 121 | 0 | 35 | 274 | 22 | 261 | 1.98e-81 | 246 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038254.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene038254.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene038254.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene038254.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene038254.t1 | AT4G19645 | 70.522 | 268 | 78 | 1 | 8 | 274 | 1 | 268 | 1.59e-142 | 401 |
| MS.gene038254.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene038254.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene038254.t1 | AT1G31300 | 65.799 | 269 | 92 | 0 | 5 | 273 | 7 | 275 | 1.48e-131 | 374 |
| MS.gene038254.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
| MS.gene038254.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
| MS.gene038254.t1 | AT4G10360 | 48.163 | 245 | 127 | 0 | 30 | 274 | 15 | 259 | 9.85e-86 | 257 |
Find 56 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATATACTTCCATTAT+TGG | 0.162120 | 5.4:-71528089 | MS.gene038254:CDS |
| CTGACCTGGGGATGATATTT+TGG | 0.191833 | 5.4:-71526348 | MS.gene038254:CDS |
| TGCGTTGTCTACGTTTGCTC+TGG | 0.295133 | 5.4:-71527592 | MS.gene038254:CDS |
| GGTTTCTGTTGGTTACTTCA+TGG | 0.300633 | 5.4:-71526371 | MS.gene038254:CDS |
| CCACCAATAATGGAAGTATA+TGG | 0.336930 | 5.4:+71528086 | None:intergenic |
| CAAACAAATTAGCCTGGTTC+TGG | 0.356158 | 5.4:+71528141 | None:intergenic |
| TTCAGCAGATGCACCCCTTT+GGG | 0.368570 | 5.4:-71524818 | MS.gene038254:CDS |
| GTACACGAACAAAAGTATTC+TGG | 0.379427 | 5.4:+71525785 | None:intergenic |
| GTTCAGCAGATGCACCCCTT+TGG | 0.395777 | 5.4:-71524819 | MS.gene038254:CDS |
| CAAAAGCTTATCTCATCAAT+GGG | 0.403192 | 5.4:-71525936 | MS.gene038254:CDS |
| TGTCAGTTATGAACTTGATT+TGG | 0.405632 | 5.4:-71524764 | MS.gene038254:CDS |
| AACAACTATGTCTTTGTACT+TGG | 0.408867 | 5.4:-71527676 | MS.gene038254:CDS |
| TCAAAAGCTTATCTCATCAA+TGG | 0.412137 | 5.4:-71525937 | MS.gene038254:CDS |
| TGCTTACTTGCACTTTGATC+AGG | 0.414301 | 5.4:-71525751 | MS.gene038254:intron |
| TGGTTACTTCATGGCTGACC+TGG | 0.414342 | 5.4:-71526362 | MS.gene038254:CDS |
| GGCTGGAATAGCTCTTAAAA+TGG | 0.414912 | 5.4:+71527851 | None:intergenic |
| GCGTTGTCTACGTTTGCTCT+GGG | 0.417870 | 5.4:-71527591 | MS.gene038254:CDS |
| TACCATCTCAAATTGATTCC+AGG | 0.421230 | 5.4:+71526069 | None:intergenic |
| CTCGCTATCAGAATATAGAT+TGG | 0.432922 | 5.4:+71527644 | None:intergenic |
| ATCTCTGAGACAACAACTCC+TGG | 0.443341 | 5.4:-71526087 | MS.gene038254:CDS |
| AACGTATTGAGTGGAATAAC+CGG | 0.480032 | 5.4:-71527816 | MS.gene038254:intron |
| TGAAGGTATCTTGATGTAGC+TGG | 0.481580 | 5.4:-71525970 | MS.gene038254:intron |
| ACAACTAGTATTTGCCCAAA+GGG | 0.485721 | 5.4:+71524804 | None:intergenic |
| CCTTCACAAACAAATTAGCC+TGG | 0.487479 | 5.4:+71528135 | None:intergenic |
| TGTGATATTCATTGCTTGGC+TGG | 0.488189 | 5.4:-71525911 | MS.gene038254:intron |
| TATTCAATGTTGAGTGGAGA+AGG | 0.490363 | 5.4:-71526135 | MS.gene038254:CDS |
| CCAGGCTAATTTGTTTGTGA+AGG | 0.491470 | 5.4:-71528135 | MS.gene038254:CDS |
| GGTTACTTCATGGCTGACCT+GGG | 0.492658 | 5.4:-71526361 | MS.gene038254:CDS |
| TTCTCCACTCAACATTGAAT+AGG | 0.506976 | 5.4:+71526137 | None:intergenic |
| GGGTTGTGATATTCATTGCT+TGG | 0.509380 | 5.4:-71525915 | MS.gene038254:CDS |
| ACGTTGGATTCTAGTGAGGC+TGG | 0.514845 | 5.4:+71527834 | None:intergenic |
| CCATATACTTCCATTATTGG+TGG | 0.519713 | 5.4:-71528086 | MS.gene038254:CDS |
| TTCATAACTGACAGCACCAC+TGG | 0.530852 | 5.4:+71524774 | None:intergenic |
| TTATTGCGACAGGTTTCTGT+TGG | 0.538429 | 5.4:-71526382 | MS.gene038254:intron |
| GTTGTCTACGTTTGCTCTGG+GGG | 0.543652 | 5.4:-71527589 | MS.gene038254:intron |
| ATGGAAGTATATGGAATCAG+AGG | 0.569837 | 5.4:+71528095 | None:intergenic |
| GGTTATTCCACTCAATACGT+TGG | 0.581665 | 5.4:+71527818 | None:intergenic |
| TACTCATATCCACCAAGAGC+AGG | 0.583577 | 5.4:+71526319 | None:intergenic |
| CGTTGTCTACGTTTGCTCTG+GGG | 0.587028 | 5.4:-71527590 | MS.gene038254:CDS |
| TTGATGTAGCTGGAATGAAA+AGG | 0.589122 | 5.4:-71525960 | MS.gene038254:CDS |
| CTCCTGGAATCAATTTGAGA+TGG | 0.592012 | 5.4:-71526071 | MS.gene038254:intron |
| GTTACTTCATGGCTGACCTG+GGG | 0.598137 | 5.4:-71526360 | MS.gene038254:CDS |
| CTAGAATCCAACGTATTGAG+TGG | 0.603281 | 5.4:-71527825 | MS.gene038254:CDS |
| AAAACCAAAATATCATCCCC+AGG | 0.607335 | 5.4:+71526344 | None:intergenic |
| ATTCAATGTTGAGTGGAGAA+GGG | 0.619830 | 5.4:-71526134 | MS.gene038254:CDS |
| AACAACTAGTATTTGCCCAA+AGG | 0.624762 | 5.4:+71524803 | None:intergenic |
| AGGGCAGCTGTACACATACA+TGG | 0.625873 | 5.4:-71526115 | MS.gene038254:CDS |
| ATTCAAATCATACCAGAACC+AGG | 0.632366 | 5.4:-71528153 | MS.gene038254:CDS |
| CAGCTGAACTTCTTACAGAA+CGG | 0.632644 | 5.4:-71527620 | MS.gene038254:CDS |
| TGGAAGTATATGGAATCAGA+GGG | 0.646274 | 5.4:+71528096 | None:intergenic |
| CAATACGTTGGATTCTAGTG+AGG | 0.649208 | 5.4:+71527830 | None:intergenic |
| GTAGCCTATTCAATGTTGAG+TGG | 0.649521 | 5.4:-71526141 | MS.gene038254:CDS |
| TAATGAAGACATTAGCGAAG+AGG | 0.656512 | 5.4:-71524719 | MS.gene038254:CDS |
| ACTAGTTGTTGTTGTACCAG+TGG | 0.666319 | 5.4:-71524790 | MS.gene038254:CDS |
| CAACTAGTATTTGCCCAAAG+GGG | 0.709004 | 5.4:+71524805 | None:intergenic |
| AAAAGCTTATCTCATCAATG+GGG | 0.737817 | 5.4:-71525935 | MS.gene038254:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATTATTTAAATCAAATA+TGG | - | chr5.4:71526346-71526365 | MS.gene038254:CDS | 10.0% |
| !!! | TATTTTTCTAACATAATTTA+AGG | - | chr5.4:71524889-71524908 | MS.gene038254:intron | 10.0% |
| !! | AAAAAAAAATCACAACATAA+TGG | + | chr5.4:71526871-71526890 | None:intergenic | 15.0% |
| !! | TAGTAATTGTTAATATTACA+CGG | - | chr5.4:71525564-71525583 | MS.gene038254:intron | 15.0% |
| !!! | TATGAGTTTTAGATAAATTA+GGG | - | chr5.4:71525447-71525466 | MS.gene038254:intron | 15.0% |
| !!! | TTATGAGTTTTAGATAAATT+AGG | - | chr5.4:71525446-71525465 | MS.gene038254:intron | 15.0% |
| !! | AACTTACAATCTAAACAAAT+AGG | - | chr5.4:71525748-71525767 | MS.gene038254:intron | 20.0% |
| !! | ACTTACAATCTAAACAAATA+GGG | - | chr5.4:71525749-71525768 | MS.gene038254:intron | 20.0% |
| !! | AGACATAGTTGTTATAAAAA+TGG | + | chr5.4:71525209-71525228 | None:intergenic | 20.0% |
| !! | AGTAATTGTTAATATTACAC+GGG | - | chr5.4:71525565-71525584 | MS.gene038254:intron | 20.0% |
| !! | ATTTAATGTGACTTCATATT+TGG | - | chr5.4:71526693-71526712 | MS.gene038254:intron | 20.0% |
| !! | ATTTCTATGATGTACTATAA+GGG | - | chr5.4:71527340-71527359 | MS.gene038254:intron | 20.0% |
| !! | CACTTGATAAATATTTGTAT+AGG | - | chr5.4:71527854-71527873 | MS.gene038254:CDS | 20.0% |
| !! | CTAATATAGAAACTAAACTT+AGG | - | chr5.4:71525843-71525862 | MS.gene038254:intron | 20.0% |
| !! | CTATACAAATATTTATCAAG+TGG | + | chr5.4:71527856-71527875 | None:intergenic | 20.0% |
| !! | GAACAATCTTAAATTCAAAT+AGG | + | chr5.4:71526647-71526666 | None:intergenic | 20.0% |
| !! | TAGTTGTTATAAAAATGGAA+TGG | + | chr5.4:71525204-71525223 | None:intergenic | 20.0% |
| !! | TTATCAATGATATTTCATCA+TGG | + | chr5.4:71525495-71525514 | None:intergenic | 20.0% |
| !!! | ATGAGTTTTAGATAAATTAG+GGG | - | chr5.4:71525448-71525467 | MS.gene038254:intron | 20.0% |
| !!! | ATTAATGCAAGATATCTTTT+TGG | + | chr5.4:71526016-71526035 | None:intergenic | 20.0% |
| !!! | GAATTAGTTTTCATATTACT+TGG | + | chr5.4:71525802-71525821 | None:intergenic | 20.0% |
| !!! | TATTTCTATGATGTACTATA+AGG | - | chr5.4:71527339-71527358 | MS.gene038254:intron | 20.0% |
| !!! | TCTAAATTTTCTATTTTTCC+AGG | - | chr5.4:71524987-71525006 | MS.gene038254:intron | 20.0% |
| !!! | TTAATGCAAGATATCTTTTT+GGG | + | chr5.4:71526015-71526034 | None:intergenic | 20.0% |
| !!! | TTAATTAAGTTTTTCTACAG+TGG | + | chr5.4:71526403-71526422 | None:intergenic | 20.0% |
| !!! | TTGTAGCTCATATTTTTTTT+TGG | - | chr5.4:71526434-71526453 | MS.gene038254:intron | 20.0% |
| !!! | TTTATTTTATTTATTGCGAC+AGG | - | chr5.4:71526500-71526519 | MS.gene038254:intron | 20.0% |
| ! | AACTATACTTAAGTCAAATG+TGG | - | chr5.4:71527883-71527902 | MS.gene038254:CDS | 25.0% |
| ! | ACATCTCAAAAAAACCAAAA+AGG | + | chr5.4:71527687-71527706 | None:intergenic | 25.0% |
| ! | ACTGACAGTATCAAATATTA+GGG | + | chr5.4:71525670-71525689 | None:intergenic | 25.0% |
| ! | AGTAGTAATCACATATAATG+AGG | - | chr5.4:71525402-71525421 | MS.gene038254:intron | 25.0% |
| ! | ATTACTAATGATGCTAACAT+TGG | + | chr5.4:71525551-71525570 | None:intergenic | 25.0% |
| ! | ATTCCATATACTTCCATTAT+TGG | - | chr5.4:71524803-71524822 | MS.gene038254:CDS | 25.0% |
| ! | CATCTCAAAAAAAAACCAAA+TGG | + | chr5.4:71527485-71527504 | None:intergenic | 25.0% |
| ! | CATCTCAAAAAAACCAAAAA+GGG | + | chr5.4:71527686-71527705 | None:intergenic | 25.0% |
| ! | CCAATATTCAATGATATAAC+AGG | - | chr5.4:71528051-71528070 | MS.gene038254:intron | 25.0% |
| ! | CCTGTTATATCATTGAATAT+TGG | + | chr5.4:71528054-71528073 | None:intergenic | 25.0% |
| ! | GACGTTTAAAAAAAAAGAGT+CGG | + | chr5.4:71525529-71525548 | None:intergenic | 25.0% |
| ! | GTAATTGTTAATATTACACG+GGG | - | chr5.4:71525566-71525585 | MS.gene038254:intron | 25.0% |
| ! | TACAAATATTTATCAAGTGG+TGG | + | chr5.4:71527853-71527872 | None:intergenic | 25.0% |
| ! | TATATCGAAAGCTTAAATAG+TGG | - | chr5.4:71526283-71526302 | MS.gene038254:intron | 25.0% |
| ! | TCTAAACAAATAGGGAAATA+AGG | - | chr5.4:71525757-71525776 | MS.gene038254:CDS | 25.0% |
| ! | TTACTAACAGATAGAAAGTA+TGG | + | chr5.4:71526330-71526349 | None:intergenic | 25.0% |
| ! | TTCATGTATTCCTAAAAGTA+GGG | + | chr5.4:71525730-71525749 | None:intergenic | 25.0% |
| !! | AGTAGTATATTTTCTCCATT+TGG | - | chr5.4:71527467-71527486 | MS.gene038254:intron | 25.0% |
| !! | GGTTTTCAAAGATTATCAAA+GGG | - | chr5.4:71528149-71528168 | MS.gene038254:CDS | 25.0% |
| !! | TGGTTTTCAAAGATTATCAA+AGG | - | chr5.4:71528148-71528167 | MS.gene038254:CDS | 25.0% |
| !!! | ACTTGTTGTTTTAGAATGAA+AGG | - | chr5.4:71526147-71526166 | MS.gene038254:CDS | 25.0% |
| !!! | AGCTCTTTATTCTGAAATTT+TGG | - | chr5.4:71527227-71527246 | MS.gene038254:intron | 25.0% |
| !!! | AGTAATTTGTTGTTTTCATG+TGG | - | chr5.4:71527363-71527382 | MS.gene038254:intron | 25.0% |
| !!! | GTAATTTGTTGTTTTCATGT+GGG | - | chr5.4:71527364-71527383 | MS.gene038254:intron | 25.0% |
| !!! | TGAGTTTTAGATAAATTAGG+GGG | - | chr5.4:71525449-71525468 | MS.gene038254:intron | 25.0% |
| !!! | TTTTTGGTTTTTTTGAGATG+TGG | - | chr5.4:71527686-71527705 | MS.gene038254:CDS | 25.0% |
| AAAAGCTTATCTCATCAATG+GGG | - | chr5.4:71526957-71526976 | MS.gene038254:intron | 30.0% | |
| AAATGAAAAAACTCACTCAC+CGG | + | chr5.4:71525098-71525117 | None:intergenic | 30.0% | |
| AACAACTATGTCTTTGTACT+TGG | - | chr5.4:71525216-71525235 | MS.gene038254:intron | 30.0% | |
| AATAGGGAAATAAGGAAATG+AGG | - | chr5.4:71525765-71525784 | MS.gene038254:CDS | 30.0% | |
| AATTCTTAAACTCAGTGTGT+TGG | + | chr5.4:71527176-71527195 | None:intergenic | 30.0% | |
| ACAATCTCTTGTGTAAAAAC+AGG | - | chr5.4:71527578-71527597 | MS.gene038254:intron | 30.0% | |
| ACATTAAATCATCTCCAGAT+GGG | + | chr5.4:71526682-71526701 | None:intergenic | 30.0% | |
| AGTAATCACATATAATGAGG+AGG | - | chr5.4:71525405-71525424 | MS.gene038254:intron | 30.0% | |
| ATTTCATTCATCACACATTC+TGG | + | chr5.4:71526121-71526140 | None:intergenic | 30.0% | |
| CAAAAGCTTATCTCATCAAT+GGG | - | chr5.4:71526956-71526975 | MS.gene038254:intron | 30.0% | |
| CAAGATCACCTAAAATTTGT+AGG | + | chr5.4:71527409-71527428 | None:intergenic | 30.0% | |
| CAATCTCTTGTGTAAAAACA+GGG | - | chr5.4:71527579-71527598 | MS.gene038254:intron | 30.0% | |
| CTGACAGTATCAAATATTAG+GGG | + | chr5.4:71525669-71525688 | None:intergenic | 30.0% | |
| GAACTATGTGTATGTATGTA+TGG | + | chr5.4:71527814-71527833 | None:intergenic | 30.0% | |
| GAATGTGTGATGAATGAAAT+TGG | - | chr5.4:71526121-71526140 | MS.gene038254:CDS | 30.0% | |
| GACTGACAGTATCAAATATT+AGG | + | chr5.4:71525671-71525690 | None:intergenic | 30.0% | |
| GTAATCACATATAATGAGGA+GGG | - | chr5.4:71525406-71525425 | MS.gene038254:intron | 30.0% | |
| GTAATCTCTTCTGTAATTTC+TGG | - | chr5.4:71527990-71528009 | MS.gene038254:intron | 30.0% | |
| GTTCATGTATTCCTAAAAGT+AGG | + | chr5.4:71525731-71525750 | None:intergenic | 30.0% | |
| TAATCACATATAATGAGGAG+GGG | - | chr5.4:71525407-71525426 | MS.gene038254:intron | 30.0% | |
| TACAATACACCAAAAATGGT+GGG | - | chr5.4:71527612-71527631 | MS.gene038254:CDS | 30.0% | |
| TAGGAGTGAATCTTGAATAT+TGG | - | chr5.4:71527709-71527728 | MS.gene038254:CDS | 30.0% | |
| TCAAAAGCTTATCTCATCAA+TGG | - | chr5.4:71526955-71526974 | MS.gene038254:intron | 30.0% | |
| TCATGTATTCCTAAAAGTAG+GGG | + | chr5.4:71525729-71525748 | None:intergenic | 30.0% | |
| TGCAAAACAATCGACTAATA+AGG | - | chr5.4:71526047-71526066 | MS.gene038254:intron | 30.0% | |
| TGGTTCACATTATATTAGTC+TGG | + | chr5.4:71526091-71526110 | None:intergenic | 30.0% | |
| TGTCAGTTATGAACTTGATT+TGG | - | chr5.4:71528128-71528147 | MS.gene038254:CDS | 30.0% | |
| ! | AATATTGGATTTTACCTGCA+TGG | - | chr5.4:71527724-71527743 | MS.gene038254:intron | 30.0% |
| ! | TATTCCTATGCACGATTTTA+AGG | - | chr5.4:71526257-71526276 | MS.gene038254:intron | 30.0% |
| !! | CTACAAATTTTAGGTGATCT+TGG | - | chr5.4:71527407-71527426 | MS.gene038254:intron | 30.0% |
| !! | TCATCAGTTTTTCAGTATAC+TGG | - | chr5.4:71526173-71526192 | MS.gene038254:CDS | 30.0% |
| !!! | GAGTTTTAGATAAATTAGGG+GGG | - | chr5.4:71525450-71525469 | MS.gene038254:intron | 30.0% |
| !!! | GGTTTTTTTTTGAGATGTGA+GGG | - | chr5.4:71527488-71527507 | MS.gene038254:intron | 30.0% |
| !!! | GTTTTTTTTTGAGATGTGAG+GGG | - | chr5.4:71527489-71527508 | MS.gene038254:intron | 30.0% |
| !!! | TGGTTTTTTTTTGAGATGTG+AGG | - | chr5.4:71527487-71527506 | MS.gene038254:intron | 30.0% |
| !!! | TTGGAAACACTTTTTTCATC+TGG | - | chr5.4:71526453-71526472 | MS.gene038254:intron | 30.0% |
| AAAACCAAAATATCATCCCC+AGG | + | chr5.4:71526551-71526570 | None:intergenic | 35.0% | |
| AAATCTGCATGGTAAATCTG+AGG | - | chr5.4:71528020-71528039 | MS.gene038254:intron | 35.0% | |
| AACAACTAGTATTTGCCCAA+AGG | + | chr5.4:71528092-71528111 | None:intergenic | 35.0% | |
| AACGTATTGAGTGGAATAAC+CGG | - | chr5.4:71525076-71525095 | MS.gene038254:intron | 35.0% | |
| AATATTAGGGGACGTAAACT+TGG | + | chr5.4:71525657-71525676 | None:intergenic | 35.0% | |
| AATCTGCATGGTAAATCTGA+GGG | - | chr5.4:71528021-71528040 | MS.gene038254:intron | 35.0% | |
| ACAACTAGTATTTGCCCAAA+GGG | + | chr5.4:71528091-71528110 | None:intergenic | 35.0% | |
| AGCAAAAATGCCACCAATAA+TGG | + | chr5.4:71524819-71524838 | None:intergenic | 35.0% | |
| ATGACCTTAAAATCGTGCAT+AGG | + | chr5.4:71526264-71526283 | None:intergenic | 35.0% | |
| ATTCAAATCATACCAGAACC+AGG | - | chr5.4:71524739-71524758 | MS.gene038254:CDS | 35.0% | |
| ATTCAATGTTGAGTGGAGAA+GGG | - | chr5.4:71526758-71526777 | MS.gene038254:intron | 35.0% | |
| CACATTAAATCATCTCCAGA+TGG | + | chr5.4:71526683-71526702 | None:intergenic | 35.0% | |
| CCATATACTTCCATTATTGG+TGG | - | chr5.4:71524806-71524825 | MS.gene038254:CDS | 35.0% | |
| CTCGCTATCAGAATATAGAT+TGG | + | chr5.4:71525251-71525270 | None:intergenic | 35.0% | |
| CTTGCAAAGAGGTAAAGAAA+AGG | + | chr5.4:71525363-71525382 | None:intergenic | 35.0% | |
| GTACAATACACCAAAAATGG+TGG | - | chr5.4:71527611-71527630 | MS.gene038254:CDS | 35.0% | |
| GTGATCTTGCAGGAAAAAAA+TGG | + | chr5.4:71527307-71527326 | None:intergenic | 35.0% | |
| TAAGAATTGTCTTGTGTCTC+TGG | - | chr5.4:71527188-71527207 | MS.gene038254:intron | 35.0% | |
| TAATGAAGACATTAGCGAAG+AGG | - | chr5.4:71528173-71528192 | MS.gene038254:CDS | 35.0% | |
| TATTCAATGTTGAGTGGAGA+AGG | - | chr5.4:71526757-71526776 | MS.gene038254:intron | 35.0% | |
| TCACACATTCTGGATTCATA+TGG | + | chr5.4:71526111-71526130 | None:intergenic | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr5.4:71527584-71527603 | MS.gene038254:intron | 35.0% | |
| TGCGTACAATACACCAAAAA+TGG | - | chr5.4:71527608-71527627 | MS.gene038254:CDS | 35.0% | |
| TGCTTACCGAAATTATTTGC+AGG | - | chr5.4:71527081-71527100 | MS.gene038254:intron | 35.0% | |
| TGGCAACCTGCAAATAATTT+CGG | + | chr5.4:71527090-71527109 | None:intergenic | 35.0% | |
| TGTAGACTTGTACTGTTGTT+TGG | - | chr5.4:71527937-71527956 | MS.gene038254:intron | 35.0% | |
| TTAATATTACACGGGGAGTT+GGG | - | chr5.4:71525573-71525592 | MS.gene038254:intron | 35.0% | |
| TTACACAAGAGATTGTTTCC+AGG | + | chr5.4:71527574-71527593 | None:intergenic | 35.0% | |
| TTCTCCACTCAACATTGAAT+AGG | + | chr5.4:71526758-71526777 | None:intergenic | 35.0% | |
| TTGATGTAGCTGGAATGAAA+AGG | - | chr5.4:71526932-71526951 | MS.gene038254:intron | 35.0% | |
| TTTCATGTGGGAAAGAAAGT+GGG | - | chr5.4:71527376-71527395 | MS.gene038254:intron | 35.0% | |
| ! | AAGCTTAGTAAGCTTTAGCT+TGG | + | chr5.4:71525934-71525953 | None:intergenic | 35.0% |
| ! | ACTGCCTTCATTTTGCTAAT+AGG | - | chr5.4:71526376-71526395 | MS.gene038254:intron | 35.0% |
| ! | AGCTTAGTAAGCTTTAGCTT+GGG | + | chr5.4:71525933-71525952 | None:intergenic | 35.0% |
| ! | ATGGAAGTATATGGAATCAG+AGG | + | chr5.4:71524800-71524819 | None:intergenic | 35.0% |
| ! | CCACCAATAATGGAAGTATA+TGG | + | chr5.4:71524809-71524828 | None:intergenic | 35.0% |
| ! | CTGCCTTCATTTTGCTAATA+GGG | - | chr5.4:71526377-71526396 | MS.gene038254:intron | 35.0% |
| ! | GATCTTGGCCTACAAATTTT+AGG | - | chr5.4:71527398-71527417 | MS.gene038254:intron | 35.0% |
| ! | GTAGACTTGTACTGTTGTTT+GGG | - | chr5.4:71527938-71527957 | MS.gene038254:intron | 35.0% |
| ! | TACCATCTCAAATTGATTCC+AGG | + | chr5.4:71526826-71526845 | None:intergenic | 35.0% |
| ! | TGGAAGTATATGGAATCAGA+GGG | + | chr5.4:71524799-71524818 | None:intergenic | 35.0% |
| ! | TGTGACTTCATATTTGGTTC+AGG | - | chr5.4:71526699-71526718 | MS.gene038254:intron | 35.0% |
| ! | TTGGTGGATATGAGTATGTA+AGG | - | chr5.4:71526580-71526599 | MS.gene038254:intron | 35.0% |
| ! | TTTTCATGTGGGAAAGAAAG+TGG | - | chr5.4:71527375-71527394 | MS.gene038254:intron | 35.0% |
| ! | TTTTCGTCTTTTGTTCGTGA+AGG | - | chr5.4:71526905-71526924 | MS.gene038254:intron | 35.0% |
| !! | CATGGATTAGTGATTTCACA+TGG | - | chr5.4:71527742-71527761 | MS.gene038254:intron | 35.0% |
| !! | GTACACGAACAAAAGTATTC+TGG | + | chr5.4:71527110-71527129 | None:intergenic | 35.0% |
| !! | TCACATGGATTAGAGATTAG+TGG | - | chr5.4:71527757-71527776 | MS.gene038254:intron | 35.0% |
| !!! | TGGTTTTTTTGAGATGTGGT+AGG | - | chr5.4:71527690-71527709 | MS.gene038254:CDS | 35.0% |
| !!! | TTTTGGTTTTTTCCTGCTCT+TGG | - | chr5.4:71526561-71526580 | MS.gene038254:intron | 35.0% |
| AAAAACCAAAAAGGGCAACC+CGG | + | chr5.4:71527678-71527697 | None:intergenic | 40.0% | |
| ATATTCATTGCTTGGCTGGT+AGG | - | chr5.4:71526985-71527004 | MS.gene038254:intron | 40.0% | |
| ATTTATCAAGTGGTGGTCAG+AGG | + | chr5.4:71527846-71527865 | None:intergenic | 40.0% | |
| CAAAATCGAGTCTTGCAAAG+AGG | + | chr5.4:71525374-71525393 | None:intergenic | 40.0% | |
| CAACTAGTATTTGCCCAAAG+GGG | + | chr5.4:71528090-71528109 | None:intergenic | 40.0% | |
| CAATACGTTGGATTCTAGTG+AGG | + | chr5.4:71525065-71525084 | None:intergenic | 40.0% | |
| CAGCTGAACTTCTTACAGAA+CGG | - | chr5.4:71525272-71525291 | MS.gene038254:intron | 40.0% | |
| CCTTCACAAACAAATTAGCC+TGG | + | chr5.4:71524760-71524779 | None:intergenic | 40.0% | |
| CCTTTGCACCTAAAACTTGT+AGG | + | chr5.4:71527433-71527452 | None:intergenic | 40.0% | |
| CTAGAATCCAACGTATTGAG+TGG | - | chr5.4:71525067-71525086 | MS.gene038254:intron | 40.0% | |
| CTCCTGGAATCAATTTGAGA+TGG | - | chr5.4:71526821-71526840 | MS.gene038254:intron | 40.0% | |
| GGCTGGAATAGCTCTTAAAA+TGG | + | chr5.4:71525044-71525063 | None:intergenic | 40.0% | |
| GGGTTGTGATATTCATTGCT+TGG | - | chr5.4:71526977-71526996 | MS.gene038254:intron | 40.0% | |
| GGTTATTCCACTCAATACGT+TGG | + | chr5.4:71525077-71525096 | None:intergenic | 40.0% | |
| GTAGCCTATTCAATGTTGAG+TGG | - | chr5.4:71526751-71526770 | MS.gene038254:intron | 40.0% | |
| GTGAAATCACTAATCCATGC+AGG | + | chr5.4:71527741-71527760 | None:intergenic | 40.0% | |
| GTTAATATTACACGGGGAGT+TGG | - | chr5.4:71525572-71525591 | MS.gene038254:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr5.4:71527534-71527553 | MS.gene038254:intron | 40.0% | |
| TGCTTACTTGCACTTTGATC+AGG | - | chr5.4:71527141-71527160 | MS.gene038254:intron | 40.0% | |
| TGGCCCTATTAGCAAAATGA+AGG | + | chr5.4:71526383-71526402 | None:intergenic | 40.0% | |
| TGTGATATTCATTGCTTGGC+TGG | - | chr5.4:71526981-71527000 | MS.gene038254:intron | 40.0% | |
| TGTTGAGAAAGTGATCTTGC+AGG | + | chr5.4:71527317-71527336 | None:intergenic | 40.0% | |
| TTATTGCGACAGGTTTCTGT+TGG | - | chr5.4:71526510-71526529 | MS.gene038254:intron | 40.0% | |
| ! | ACTAGTTGTTGTTGTACCAG+TGG | - | chr5.4:71528102-71528121 | MS.gene038254:CDS | 40.0% |
| ! | CAAACAAATTAGCCTGGTTC+TGG | + | chr5.4:71524754-71524773 | None:intergenic | 40.0% |
| ! | GATCTTGGCCTACAAGTTTT+AGG | - | chr5.4:71527422-71527441 | MS.gene038254:intron | 40.0% |
| ! | GGTTTCTGTTGGTTACTTCA+TGG | - | chr5.4:71526521-71526540 | MS.gene038254:intron | 40.0% |
| ! | GTAAACTTGGTTTGATGGCT+GGG | + | chr5.4:71525644-71525663 | None:intergenic | 40.0% |
| ! | TAAACTTGGTTTGATGGCTG+GGG | + | chr5.4:71525643-71525662 | None:intergenic | 40.0% |
| ! | TGGCATTTTTGCTTGCAAGA+TGG | - | chr5.4:71524826-71524845 | MS.gene038254:intron | 40.0% |
| !! | CCAGGCTAATTTGTTTGTGA+AGG | - | chr5.4:71524757-71524776 | MS.gene038254:CDS | 40.0% |
| !! | CTTAGTAAGCTTTAGCTTGG+GGG | + | chr5.4:71525931-71525950 | None:intergenic | 40.0% |
| !! | GCTTAGTAAGCTTTAGCTTG+GGG | + | chr5.4:71525932-71525951 | None:intergenic | 40.0% |
| !! | TGAAGGTATCTTGATGTAGC+TGG | - | chr5.4:71526922-71526941 | MS.gene038254:intron | 40.0% |
| !! | TTAGTAAGCTTTAGCTTGGG+GGG | + | chr5.4:71525930-71525949 | None:intergenic | 40.0% |
| !!! | CCTACAAGTTTTAGGTGCAA+AGG | - | chr5.4:71527430-71527449 | MS.gene038254:intron | 40.0% |
| CTGGTCAAGCAAAATCTGCA+TGG | - | chr5.4:71528009-71528028 | MS.gene038254:intron | 45.0% | |
| GAGTTAAGAGCAGCGTGATA+AGG | + | chr5.4:71525615-71525634 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr5.4:71527540-71527559 | MS.gene038254:intron | 45.0% | |
| TACTCATATCCACCAAGAGC+AGG | + | chr5.4:71526576-71526595 | None:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr5.4:71527541-71527560 | MS.gene038254:intron | 45.0% | |
| TGGGAAAGAAAGTGGGATCT+TGG | - | chr5.4:71527383-71527402 | MS.gene038254:intron | 45.0% | |
| TTAAGAGCAGCGTGATAAGG+AGG | + | chr5.4:71525612-71525631 | None:intergenic | 45.0% | |
| TTCATAACTGACAGCACCAC+TGG | + | chr5.4:71528121-71528140 | None:intergenic | 45.0% | |
| ! | CGTAAACTTGGTTTGATGGC+TGG | + | chr5.4:71525645-71525664 | None:intergenic | 45.0% |
| ! | CTGACCTGGGGATGATATTT+TGG | - | chr5.4:71526544-71526563 | MS.gene038254:intron | 45.0% |
| ! | GGGACGTAAACTTGGTTTGA+TGG | + | chr5.4:71525649-71525668 | None:intergenic | 45.0% |
| ! | TCACTTGATAGCAACCCATC+TGG | - | chr5.4:71526665-71526684 | MS.gene038254:intron | 45.0% |
| ! | TGTCAGTCAAGTCACTGACT+TGG | - | chr5.4:71525683-71525702 | MS.gene038254:intron | 45.0% |
| !! | ACACACTAGCCCCTACTTTT+AGG | - | chr5.4:71525717-71525736 | MS.gene038254:intron | 45.0% |
| !! | ATCTCTGAGACAACAACTCC+TGG | - | chr5.4:71526805-71526824 | MS.gene038254:intron | 45.0% |
| !! | TAGTAAGCTTTAGCTTGGGG+GGG | + | chr5.4:71525929-71525948 | None:intergenic | 45.0% |
| !!! | TGGTTTTTTCCTGCTCTTGG+TGG | - | chr5.4:71526564-71526583 | MS.gene038254:intron | 45.0% |
| !!! | TAGATTTTTTTTTTTTTTTT+TGG | + | chr5.4:71524971-71524990 | None:intergenic | 5.0% |
| ACGTTGGATTCTAGTGAGGC+TGG | + | chr5.4:71525061-71525080 | None:intergenic | 50.0% | |
| AGGGCAGCTGTACACATACA+TGG | - | chr5.4:71526777-71526796 | MS.gene038254:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr5.4:71527518-71527537 | None:intergenic | 50.0% | |
| CGTTGTCTACGTTTGCTCTG+GGG | - | chr5.4:71525302-71525321 | MS.gene038254:intron | 50.0% | |
| GAGTTCTCATTCTTCCCCTC+TGG | - | chr5.4:71527054-71527073 | MS.gene038254:intron | 50.0% | |
| GCGTTGTCTACGTTTGCTCT+GGG | - | chr5.4:71525301-71525320 | MS.gene038254:intron | 50.0% | |
| GCTGAGTAAGATCGTAGACC+TGG | + | chr5.4:71525008-71525027 | None:intergenic | 50.0% | |
| GGTTACTTCATGGCTGACCT+GGG | - | chr5.4:71526531-71526550 | MS.gene038254:intron | 50.0% | |
| GTTACTTCATGGCTGACCTG+GGG | - | chr5.4:71526532-71526551 | MS.gene038254:intron | 50.0% | |
| GTTGTCTACGTTTGCTCTGG+GGG | - | chr5.4:71525303-71525322 | MS.gene038254:intron | 50.0% | |
| TCTGGGGGTAAGAATGGTCT+TGG | - | chr5.4:71525318-71525337 | MS.gene038254:intron | 50.0% | |
| TGAGATGTGAGGGGTAACCT+TGG | - | chr5.4:71527498-71527517 | MS.gene038254:intron | 50.0% | |
| TGCGTTGTCTACGTTTGCTC+TGG | - | chr5.4:71525300-71525319 | MS.gene038254:intron | 50.0% | |
| TGGTTACTTCATGGCTGACC+TGG | - | chr5.4:71526530-71526549 | MS.gene038254:intron | 50.0% | |
| TTCAGCAGATGCACCCCTTT+GGG | - | chr5.4:71528074-71528093 | MS.gene038254:CDS | 50.0% | |
| TTCGGTAAGCATGTGCCAGA+GGG | + | chr5.4:71527072-71527091 | None:intergenic | 50.0% | |
| TTTCGGTAAGCATGTGCCAG+AGG | + | chr5.4:71527073-71527092 | None:intergenic | 50.0% | |
| !! | GTTTGCTCTGGGGGTAAGAA+TGG | - | chr5.4:71525312-71525331 | MS.gene038254:intron | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr5.4:71527553-71527572 | MS.gene038254:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr5.4:71527652-71527671 | None:intergenic | 55.0% | |
| CAGCGTGATAAGGAGGTCGA+GGG | + | chr5.4:71525605-71525624 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr5.4:71527651-71527670 | None:intergenic | 55.0% | |
| GTTCAGCAGATGCACCCCTT+TGG | - | chr5.4:71528073-71528092 | MS.gene038254:CDS | 55.0% | |
| TCGGTAAGCATGTGCCAGAG+GGG | + | chr5.4:71527071-71527090 | None:intergenic | 55.0% | |
| ! | AAAATGGTGGGACCCCTTCC+CGG | - | chr5.4:71527624-71527643 | MS.gene038254:CDS | 55.0% |
| ! | ACTTGGTTTGATGGCTGGGG+TGG | + | chr5.4:71525640-71525659 | None:intergenic | 55.0% |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr5.4:71527656-71527675 | MS.gene038254:CDS | 55.0% |
| ! | GGAAGGGGTCCCACCATTTT+TGG | + | chr5.4:71527624-71527643 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr5.4:71527507-71527526 | MS.gene038254:intron | 60.0% | |
| GCAGCGTGATAAGGAGGTCG+AGG | + | chr5.4:71525606-71525625 | None:intergenic | 60.0% | |
| ! | GTGCACCGGGTTGCCCTTTT+TGG | - | chr5.4:71527670-71527689 | MS.gene038254:CDS | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr5.4:71527657-71527676 | MS.gene038254:CDS | 60.0% |
| ! | TGGTTTGATGGCTGGGGTGG+AGG | + | chr5.4:71525637-71525656 | None:intergenic | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr5.4:71527639-71527658 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr5.4:71527639-71527658 | MS.gene038254:CDS | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr5.4:71527640-71527659 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr5.4:71527640-71527659 | MS.gene038254:CDS | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr5.4:71527641-71527660 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr5.4:71527645-71527664 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr5.4:71527646-71527665 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 71524713 | 71528201 | 71524713 | ID=MS.gene038254 |
| chr5.4 | mRNA | 71524713 | 71528201 | 71524713 | ID=MS.gene038254.t1;Parent=MS.gene038254 |
| chr5.4 | exon | 71528067 | 71528201 | 71528067 | ID=MS.gene038254.t1.exon1;Parent=MS.gene038254.t1 |
| chr5.4 | CDS | 71528067 | 71528201 | 71528067 | ID=cds.MS.gene038254.t1;Parent=MS.gene038254.t1 |
| chr5.4 | exon | 71527817 | 71527905 | 71527817 | ID=MS.gene038254.t1.exon2;Parent=MS.gene038254.t1 |
| chr5.4 | CDS | 71527817 | 71527905 | 71527817 | ID=cds.MS.gene038254.t1;Parent=MS.gene038254.t1 |
| chr5.4 | exon | 71527590 | 71527728 | 71527590 | ID=MS.gene038254.t1.exon3;Parent=MS.gene038254.t1 |
| chr5.4 | CDS | 71527590 | 71527728 | 71527590 | ID=cds.MS.gene038254.t1;Parent=MS.gene038254.t1 |
| chr5.4 | exon | 71526318 | 71526392 | 71526318 | ID=MS.gene038254.t1.exon4;Parent=MS.gene038254.t1 |
| chr5.4 | CDS | 71526318 | 71526392 | 71526318 | ID=cds.MS.gene038254.t1;Parent=MS.gene038254.t1 |
| chr5.4 | exon | 71526072 | 71526193 | 71526072 | ID=MS.gene038254.t1.exon5;Parent=MS.gene038254.t1 |
| chr5.4 | CDS | 71526072 | 71526193 | 71526072 | ID=cds.MS.gene038254.t1;Parent=MS.gene038254.t1 |
| chr5.4 | exon | 71525912 | 71525987 | 71525912 | ID=MS.gene038254.t1.exon6;Parent=MS.gene038254.t1 |
| chr5.4 | CDS | 71525912 | 71525987 | 71525912 | ID=cds.MS.gene038254.t1;Parent=MS.gene038254.t1 |
| chr5.4 | exon | 71525752 | 71525811 | 71525752 | ID=MS.gene038254.t1.exon7;Parent=MS.gene038254.t1 |
| chr5.4 | CDS | 71525752 | 71525811 | 71525752 | ID=cds.MS.gene038254.t1;Parent=MS.gene038254.t1 |
| chr5.4 | exon | 71524713 | 71524841 | 71524713 | ID=MS.gene038254.t1.exon8;Parent=MS.gene038254.t1 |
| chr5.4 | CDS | 71524713 | 71524841 | 71524713 | ID=cds.MS.gene038254.t1;Parent=MS.gene038254.t1 |
| Gene Sequence |
| Protein sequence |
