Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03843.t1 | XP_003606113.1 | 98.8 | 420 | 5 | 0 | 1 | 420 | 1 | 420 | 3.70E-234 | 820.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03843.t1 | Q9ZW88 | 72.6 | 419 | 115 | 0 | 2 | 420 | 1 | 419 | 8.1e-174 | 611.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03843.t1 | G7JIE1 | 98.8 | 420 | 5 | 0 | 1 | 420 | 1 | 420 | 2.6e-234 | 820.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072244 | MS.gene03843 | PPI |
| MS.gene36809 | MS.gene03843 | PPI |
| MS.gene32305 | MS.gene03843 | PPI |
| MS.gene36807 | MS.gene03843 | PPI |
| MS.gene36810 | MS.gene03843 | PPI |
| MS.gene36743 | MS.gene03843 | PPI |
| MS.gene007794 | MS.gene03843 | PPI |
| MS.gene36943 | MS.gene03843 | PPI |
| MS.gene36764 | MS.gene03843 | PPI |
| MS.gene36942 | MS.gene03843 | PPI |
| MS.gene36763 | MS.gene03843 | PPI |
| MS.gene36804 | MS.gene03843 | PPI |
| MS.gene055754 | MS.gene03843 | PPI |
| MS.gene36752 | MS.gene03843 | PPI |
| MS.gene032379 | MS.gene03843 | PPI |
| MS.gene32300 | MS.gene03843 | PPI |
| MS.gene072231 | MS.gene03843 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03843.t1 | MTR_4g053260 | 98.810 | 420 | 5 | 0 | 1 | 420 | 1 | 420 | 0.0 | 848 |
| MS.gene03843.t1 | MTR_1g060040 | 66.348 | 419 | 141 | 0 | 2 | 420 | 1 | 419 | 0.0 | 544 |
| MS.gene03843.t1 | MTR_7g104490 | 63.007 | 419 | 155 | 0 | 2 | 420 | 1 | 419 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03843.t1 | AT1G67190 | 72.554 | 419 | 115 | 0 | 2 | 420 | 1 | 419 | 0.0 | 610 |
| MS.gene03843.t1 | AT1G67190 | 72.554 | 419 | 115 | 0 | 2 | 420 | 1 | 419 | 0.0 | 610 |
Find 89 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCATCTGGTAAAATTT+TGG | 0.172000 | 4.1:+44900402 | None:intergenic |
| TGAGGATGAGGTTGTGGATT+TGG | 0.254844 | 4.1:-44900328 | MS.gene03843:CDS |
| CAGTTTGGACAAGTTTATAT+TGG | 0.269366 | 4.1:-44900604 | MS.gene03843:CDS |
| TCTGGAGAATGTTGTTGTTT+TGG | 0.293687 | 4.1:-44900208 | MS.gene03843:CDS |
| TAAGCTGGAAATACTTGATT+TGG | 0.306970 | 4.1:-44900856 | MS.gene03843:CDS |
| ATCGACATCTTCCATCAAAA+TGG | 0.308813 | 4.1:+44900998 | None:intergenic |
| AACCATGGATGTGGTGAAAT+TGG | 0.318949 | 4.1:+44900047 | None:intergenic |
| TTTAAAGAGGCTTAGGCTTT+GGG | 0.320285 | 4.1:-44900367 | MS.gene03843:CDS |
| ATTTAAAGAGGCTTAGGCTT+TGG | 0.321881 | 4.1:-44900368 | MS.gene03843:CDS |
| CAGCTTCCTGTTGAAGTGAT+TGG | 0.330061 | 4.1:-44901227 | MS.gene03843:CDS |
| CACGGAAACCTCTGATAATT+CGG | 0.345988 | 4.1:+44900807 | None:intergenic |
| TCAGCAATTTCACAATCATT+TGG | 0.372152 | 4.1:-44900425 | MS.gene03843:CDS |
| TGCGTTGGATTTGAGTCTTT+TGG | 0.381205 | 4.1:-44900748 | MS.gene03843:CDS |
| CGGCTTCTGCTGTTATTGCT+TGG | 0.385178 | 4.1:-44900968 | MS.gene03843:CDS |
| CGTCAAATTTAAAGAGGCTT+AGG | 0.387919 | 4.1:-44900374 | MS.gene03843:CDS |
| TTTACAAGGCTCTTGTCATC+TGG | 0.389178 | 4.1:-44900226 | MS.gene03843:CDS |
| TATGCCGAATGTTAACATTC+TGG | 0.391323 | 4.1:-44900895 | MS.gene03843:CDS |
| TGGAGCATAATTCCATTGTT+GGG | 0.394380 | 4.1:-44900836 | MS.gene03843:CDS |
| ATCGATCCTAAAATTCTTCA+AGG | 0.397808 | 4.1:+44900509 | None:intergenic |
| TGACTAGCTTCTTGAGAATA+GGG | 0.400290 | 4.1:+44900121 | None:intergenic |
| AGCTTCCTGTTGAAGTGATT+GGG | 0.400824 | 4.1:-44901226 | MS.gene03843:CDS |
| TGTCCTTTAGCTCGAATGAT+TGG | 0.401648 | 4.1:-44901106 | MS.gene03843:CDS |
| AGCTTTGGAGCTTGTTAATC+CGG | 0.402983 | 4.1:-44900703 | MS.gene03843:CDS |
| TTGGAGCATAATTCCATTGT+TGG | 0.407591 | 4.1:-44900837 | MS.gene03843:CDS |
| AGAGATGGAGTTCTTCACTA+TGG | 0.408458 | 4.1:-44900249 | MS.gene03843:CDS |
| CGAGATCGTCAAATTTAAAG+AGG | 0.422365 | 4.1:-44900380 | MS.gene03843:CDS |
| TGATGATGAGGATGAGGTTG+TGG | 0.427773 | 4.1:-44900334 | MS.gene03843:CDS |
| ATGTTCCCAATCACTTCAAC+AGG | 0.428833 | 4.1:+44901221 | None:intergenic |
| GTGTCCGAGGATTGAAGCTT+TGG | 0.433033 | 4.1:-44900718 | MS.gene03843:CDS |
| TAAGCAGCCCCTCGACCCAC+TGG | 0.433128 | 4.1:+44900151 | None:intergenic |
| TTAACATTCTGGAGATTTGT+GGG | 0.446810 | 4.1:-44900884 | MS.gene03843:CDS |
| CCTCGGCAACATGCAAGAAA+TGG | 0.450786 | 4.1:-44901160 | MS.gene03843:CDS |
| ATGACTAGCTTCTTGAGAAT+AGG | 0.451924 | 4.1:+44900120 | None:intergenic |
| ATCTCCAGAATGTTAACATT+CGG | 0.457841 | 4.1:+44900891 | None:intergenic |
| TTGACGATCTCGAAATCATC+TGG | 0.458040 | 4.1:+44900391 | None:intergenic |
| GTTAACATTCTGGAGATTTG+TGG | 0.459161 | 4.1:-44900885 | MS.gene03843:CDS |
| CGACCAATCATTCGAGCTAA+AGG | 0.471782 | 4.1:+44901103 | None:intergenic |
| TTATGTTGAAGCAATCAGTT+TGG | 0.472225 | 4.1:-44900619 | MS.gene03843:CDS |
| AGCTCCAAAGCTTCAATCCT+CGG | 0.473894 | 4.1:+44900714 | None:intergenic |
| TTTGGACAAGTTTATATTGG+AGG | 0.477597 | 4.1:-44900601 | MS.gene03843:CDS |
| GGAAGATGTCGATGAATTCT+CGG | 0.479221 | 4.1:-44900988 | MS.gene03843:CDS |
| GCATCAGACATTGCAATCTC+CGG | 0.479437 | 4.1:+44900684 | None:intergenic |
| CTCAAGAAGCTAGTCATTCA+CGG | 0.479475 | 4.1:-44900114 | MS.gene03843:CDS |
| GGATGTGATGTTTGATGATG+AGG | 0.482977 | 4.1:-44900346 | MS.gene03843:CDS |
| CATCCCTTGCAGCCTTGAGA+TGG | 0.484957 | 4.1:+44901192 | None:intergenic |
| GTTCTTCACTATGGTTTACA+AGG | 0.499525 | 4.1:-44900240 | MS.gene03843:CDS |
| AAGTTTATATTGGAGGCTGA+TGG | 0.502708 | 4.1:-44900594 | MS.gene03843:CDS |
| GATTTGTGGGAGGCATAAGC+TGG | 0.505044 | 4.1:-44900871 | MS.gene03843:CDS |
| CATTCACGGTGTTGTTTCCG+AGG | 0.515633 | 4.1:-44900100 | MS.gene03843:CDS |
| TTGCTTGGCTTATGTACACC+AGG | 0.528196 | 4.1:-44900953 | MS.gene03843:CDS |
| AGTTTATATTGGAGGCTGAT+GGG | 0.528821 | 4.1:-44900593 | MS.gene03843:CDS |
| AGCCAATTTCACCACATCCA+TGG | 0.531036 | 4.1:-44900049 | MS.gene03843:CDS |
| CCATTTCTTGCATGTTGCCG+AGG | 0.538491 | 4.1:+44901160 | None:intergenic |
| CATCAGCTCAACCATGGATG+TGG | 0.539794 | 4.1:+44900038 | None:intergenic |
| CATCCATGGTTGAGCTGATG+AGG | 0.541436 | 4.1:-44900035 | MS.gene03843:CDS |
| ATCCCTTGCAGCCTTGAGAT+GGG | 0.542502 | 4.1:+44901193 | None:intergenic |
| ATCCCATCTCAAGGCTGCAA+GGG | 0.546912 | 4.1:-44901195 | MS.gene03843:CDS |
| GGAGCATAATTCCATTGTTG+GGG | 0.547575 | 4.1:-44900835 | MS.gene03843:CDS |
| TCTCAAGGCTGCAAGGGATG+TGG | 0.548007 | 4.1:-44901189 | MS.gene03843:CDS |
| CTTTAGCTCGAATGATTGGT+CGG | 0.556087 | 4.1:-44901102 | MS.gene03843:CDS |
| TATCCCATCTCAAGGCTGCA+AGG | 0.556217 | 4.1:-44901196 | MS.gene03843:CDS |
| GATGTTTGATGATGAGGATG+AGG | 0.563175 | 4.1:-44900340 | MS.gene03843:CDS |
| TAATTGCCTCAGAGTCTCCC+TGG | 0.569386 | 4.1:+44900935 | None:intergenic |
| AAGCAGCCCCTCGACCCACT+GGG | 0.569654 | 4.1:+44900152 | None:intergenic |
| TGTGATCAAAATCTCGAGAC+GGG | 0.573447 | 4.1:+44901058 | None:intergenic |
| GGTCGAGAATCTTGAGAGTG+TGG | 0.574858 | 4.1:-44900451 | MS.gene03843:CDS |
| TTCTTCATCAGACTTAGCCT+CGG | 0.578132 | 4.1:+44900083 | None:intergenic |
| TTGTGTTAGTATATCTGCGT+TGG | 0.586686 | 4.1:-44900763 | MS.gene03843:CDS |
| ATTCGGCTCAACCCCAACAA+TGG | 0.586694 | 4.1:+44900824 | None:intergenic |
| CTGAGTTATGATGTGAGAGA+TGG | 0.590837 | 4.1:-44900264 | MS.gene03843:CDS |
| ACATCTTGACATTGGTGAGA+CGG | 0.597711 | 4.1:-44900472 | MS.gene03843:CDS |
| AAGGGATGTGGTCATAGCCT+CGG | 0.609362 | 4.1:-44901177 | MS.gene03843:CDS |
| GTGTGATCAAAATCTCGAGA+CGG | 0.619260 | 4.1:+44901057 | None:intergenic |
| TCTCCTCATCAGCTCAACCA+TGG | 0.619817 | 4.1:+44900032 | None:intergenic |
| AACTCAGAGATAAATGACTC+AGG | 0.621606 | 4.1:+44900280 | None:intergenic |
| AGTGTTATACATCTTGACAT+TGG | 0.622017 | 4.1:-44900480 | MS.gene03843:CDS |
| GATTGCAATGTCTGATGCAA+TGG | 0.623873 | 4.1:-44900679 | MS.gene03843:CDS |
| AATGGAAAGCGACTGCAACC+CGG | 0.628343 | 4.1:+44901016 | None:intergenic |
| GGGTTGAGCCGAATTATCAG+AGG | 0.628727 | 4.1:-44900815 | MS.gene03843:CDS |
| AGAGATAAATGACTCAGGTG+TGG | 0.630363 | 4.1:+44900285 | None:intergenic |
| AACGAAAGTGATTTCAAACA+CGG | 0.631215 | 4.1:+44900789 | None:intergenic |
| TCGAGCTAAAGGACAATGTG+TGG | 0.633617 | 4.1:+44901114 | None:intergenic |
| CGTTGAGCTACTCAATTCAA+CGG | 0.644059 | 4.1:+44900653 | None:intergenic |
| ACTCAGGTGTGGAAAACAAG+TGG | 0.646224 | 4.1:+44900296 | None:intergenic |
| GAACATACTATCCCATCTCA+AGG | 0.653061 | 4.1:-44901204 | MS.gene03843:CDS |
| TGCTTGGCTTATGTACACCA+GGG | 0.664685 | 4.1:-44900952 | MS.gene03843:CDS |
| TGTACACCAGGGAGACTCTG+AGG | 0.674668 | 4.1:-44900941 | MS.gene03843:CDS |
| ACATTCTGGAGATTTGTGGG+AGG | 0.676084 | 4.1:-44900881 | MS.gene03843:CDS |
| GACGGGTCGTTGATAAATCG+CGG | 0.678396 | 4.1:+44901075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATCATCTGGTAAAATTT+TGG | + | chr4.1:44900833-44900852 | None:intergenic | 25.0% |
| AACGAAAGTGATTTCAAACA+CGG | + | chr4.1:44900446-44900465 | None:intergenic | 30.0% | |
| AGTGTTATACATCTTGACAT+TGG | - | chr4.1:44900752-44900771 | MS.gene03843:CDS | 30.0% | |
| ATCGATCCTAAAATTCTTCA+AGG | + | chr4.1:44900726-44900745 | None:intergenic | 30.0% | |
| ATCTCCAGAATGTTAACATT+CGG | + | chr4.1:44900344-44900363 | None:intergenic | 30.0% | |
| CAGTTTGGACAAGTTTATAT+TGG | - | chr4.1:44900628-44900647 | MS.gene03843:CDS | 30.0% | |
| TAAGCTGGAAATACTTGATT+TGG | - | chr4.1:44900376-44900395 | MS.gene03843:CDS | 30.0% | |
| TCAGCAATTTCACAATCATT+TGG | - | chr4.1:44900807-44900826 | MS.gene03843:CDS | 30.0% | |
| TTATGTTGAAGCAATCAGTT+TGG | - | chr4.1:44900613-44900632 | MS.gene03843:CDS | 30.0% | |
| TTTGGACAAGTTTATATTGG+AGG | - | chr4.1:44900631-44900650 | MS.gene03843:CDS | 30.0% | |
| ! | CTTGAAGTTTTTGAACTCAT+TGG | - | chr4.1:44900692-44900711 | MS.gene03843:CDS | 30.0% |
| ! | TTAACATTCTGGAGATTTGT+GGG | - | chr4.1:44900348-44900367 | MS.gene03843:CDS | 30.0% |
| AACTCAGAGATAAATGACTC+AGG | + | chr4.1:44900955-44900974 | None:intergenic | 35.0% | |
| AAGTTTATATTGGAGGCTGA+TGG | - | chr4.1:44900638-44900657 | MS.gene03843:CDS | 35.0% | |
| AGTTTATATTGGAGGCTGAT+GGG | - | chr4.1:44900639-44900658 | MS.gene03843:CDS | 35.0% | |
| ATCGACATCTTCCATCAAAA+TGG | + | chr4.1:44900237-44900256 | None:intergenic | 35.0% | |
| ATTTAAAGAGGCTTAGGCTT+TGG | - | chr4.1:44900864-44900883 | MS.gene03843:CDS | 35.0% | |
| CGAGATCGTCAAATTTAAAG+AGG | - | chr4.1:44900852-44900871 | MS.gene03843:CDS | 35.0% | |
| CGTCAAATTTAAAGAGGCTT+AGG | - | chr4.1:44900858-44900877 | MS.gene03843:CDS | 35.0% | |
| GTTCTTCACTATGGTTTACA+AGG | - | chr4.1:44900992-44901011 | MS.gene03843:CDS | 35.0% | |
| TATGCCGAATGTTAACATTC+TGG | - | chr4.1:44900337-44900356 | MS.gene03843:CDS | 35.0% | |
| TGGAGCATAATTCCATTGTT+GGG | - | chr4.1:44900396-44900415 | MS.gene03843:CDS | 35.0% | |
| TTGGAGCATAATTCCATTGT+TGG | - | chr4.1:44900395-44900414 | MS.gene03843:CDS | 35.0% | |
| TTGTGTTAGTATATCTGCGT+TGG | - | chr4.1:44900469-44900488 | MS.gene03843:CDS | 35.0% | |
| TTTAAAGAGGCTTAGGCTTT+GGG | - | chr4.1:44900865-44900884 | MS.gene03843:CDS | 35.0% | |
| ! | AGTTTTTGAACTCATTGGCA+AGG | - | chr4.1:44900697-44900716 | MS.gene03843:CDS | 35.0% |
| ! | GTTAACATTCTGGAGATTTG+TGG | - | chr4.1:44900347-44900366 | MS.gene03843:CDS | 35.0% |
| ! | GTTTTTGAACTCATTGGCAA+GGG | - | chr4.1:44900698-44900717 | MS.gene03843:CDS | 35.0% |
| ! | TAATGATCTTTTCTCCCAGT+GGG | - | chr4.1:44901066-44901085 | MS.gene03843:CDS | 35.0% |
| ! | TTAATGATCTTTTCTCCCAG+TGG | - | chr4.1:44901065-44901084 | MS.gene03843:CDS | 35.0% |
| ! | TTTTTGAACTCATTGGCAAG+GGG | - | chr4.1:44900699-44900718 | MS.gene03843:CDS | 35.0% |
| !! | AGACTATTTTTCAGACATCC+GGG | - | chr4.1:44900198-44900217 | MS.gene03843:CDS | 35.0% |
| !! | ATGACTAGCTTCTTGAGAAT+AGG | + | chr4.1:44901115-44901134 | None:intergenic | 35.0% |
| !! | CAGACTATTTTTCAGACATC+CGG | - | chr4.1:44900197-44900216 | MS.gene03843:CDS | 35.0% |
| !! | TGACTAGCTTCTTGAGAATA+GGG | + | chr4.1:44901114-44901133 | None:intergenic | 35.0% |
| !!! | AATGTTGTTGTTTTGGAGCT+TGG | - | chr4.1:44901031-44901050 | MS.gene03843:CDS | 35.0% |
| !!! | TCTGGAGAATGTTGTTGTTT+TGG | - | chr4.1:44901024-44901043 | MS.gene03843:CDS | 35.0% |
| AACCATGGATGTGGTGAAAT+TGG | + | chr4.1:44901188-44901207 | None:intergenic | 40.0% | |
| ACATCTTGACATTGGTGAGA+CGG | - | chr4.1:44900760-44900779 | MS.gene03843:CDS | 40.0% | |
| AGAGATAAATGACTCAGGTG+TGG | + | chr4.1:44900950-44900969 | None:intergenic | 40.0% | |
| AGAGATGGAGTTCTTCACTA+TGG | - | chr4.1:44900983-44901002 | MS.gene03843:CDS | 40.0% | |
| AGCTTCCTGTTGAAGTGATT+GGG | - | chr4.1:44900006-44900025 | MS.gene03843:CDS | 40.0% | |
| ATGTTCCCAATCACTTCAAC+AGG | + | chr4.1:44900014-44900033 | None:intergenic | 40.0% | |
| CACGGAAACCTCTGATAATT+CGG | + | chr4.1:44900428-44900447 | None:intergenic | 40.0% | |
| CGTTGAGCTACTCAATTCAA+CGG | + | chr4.1:44900582-44900601 | None:intergenic | 40.0% | |
| CTCAAGAAGCTAGTCATTCA+CGG | - | chr4.1:44901118-44901137 | MS.gene03843:CDS | 40.0% | |
| CTGAGTTATGATGTGAGAGA+TGG | - | chr4.1:44900968-44900987 | MS.gene03843:CDS | 40.0% | |
| GAACATACTATCCCATCTCA+AGG | - | chr4.1:44900028-44900047 | MS.gene03843:CDS | 40.0% | |
| GATTGCAATGTCTGATGCAA+TGG | - | chr4.1:44900553-44900572 | MS.gene03843:CDS | 40.0% | |
| GGAAGATGTCGATGAATTCT+CGG | - | chr4.1:44900244-44900263 | MS.gene03843:CDS | 40.0% | |
| GGAGCATAATTCCATTGTTG+GGG | - | chr4.1:44900397-44900416 | MS.gene03843:CDS | 40.0% | |
| GTGTGATCAAAATCTCGAGA+CGG | + | chr4.1:44900178-44900197 | None:intergenic | 40.0% | |
| TGTGATCAAAATCTCGAGAC+GGG | + | chr4.1:44900177-44900196 | None:intergenic | 40.0% | |
| TTCTTCATCAGACTTAGCCT+CGG | + | chr4.1:44901152-44901171 | None:intergenic | 40.0% | |
| TTGACGATCTCGAAATCATC+TGG | + | chr4.1:44900844-44900863 | None:intergenic | 40.0% | |
| TTTACAAGGCTCTTGTCATC+TGG | - | chr4.1:44901006-44901025 | MS.gene03843:CDS | 40.0% | |
| ! | AGGGGACCTTGAAGAATTTT+AGG | - | chr4.1:44900717-44900736 | MS.gene03843:CDS | 40.0% |
| ! | CTTTAGCTCGAATGATTGGT+CGG | - | chr4.1:44900130-44900149 | MS.gene03843:CDS | 40.0% |
| ! | TGCGTTGGATTTGAGTCTTT+TGG | - | chr4.1:44900484-44900503 | MS.gene03843:CDS | 40.0% |
| ! | TGTCCTTTAGCTCGAATGAT+TGG | - | chr4.1:44900126-44900145 | MS.gene03843:CDS | 40.0% |
| !! | AGCTTTGGAGCTTGTTAATC+CGG | - | chr4.1:44900529-44900548 | MS.gene03843:CDS | 40.0% |
| !! | GATGTTTGATGATGAGGATG+AGG | - | chr4.1:44900892-44900911 | MS.gene03843:CDS | 40.0% |
| !! | GGATGTGATGTTTGATGATG+AGG | - | chr4.1:44900886-44900905 | MS.gene03843:CDS | 40.0% |
| ACTCAGGTGTGGAAAACAAG+TGG | + | chr4.1:44900939-44900958 | None:intergenic | 45.0% | |
| AGCCAATTTCACCACATCCA+TGG | - | chr4.1:44901183-44901202 | MS.gene03843:CDS | 45.0% | |
| AGCTCCAAAGCTTCAATCCT+CGG | + | chr4.1:44900521-44900540 | None:intergenic | 45.0% | |
| CAGCTTCCTGTTGAAGTGAT+TGG | - | chr4.1:44900005-44900024 | MS.gene03843:CDS | 45.0% | |
| CGACCAATCATTCGAGCTAA+AGG | + | chr4.1:44900132-44900151 | None:intergenic | 45.0% | |
| GCATCAGACATTGCAATCTC+CGG | + | chr4.1:44900551-44900570 | None:intergenic | 45.0% | |
| TCGAGCTAAAGGACAATGTG+TGG | + | chr4.1:44900121-44900140 | None:intergenic | 45.0% | |
| TGAGGATGAGGTTGTGGATT+TGG | - | chr4.1:44900904-44900923 | MS.gene03843:CDS | 45.0% | |
| TGCTTGGCTTATGTACACCA+GGG | - | chr4.1:44900280-44900299 | MS.gene03843:CDS | 45.0% | |
| TTGCTTGGCTTATGTACACC+AGG | - | chr4.1:44900279-44900298 | MS.gene03843:CDS | 45.0% | |
| ! | ACATTCTGGAGATTTGTGGG+AGG | - | chr4.1:44900351-44900370 | MS.gene03843:CDS | 45.0% |
| ! | TGATGATGAGGATGAGGTTG+TGG | - | chr4.1:44900898-44900917 | MS.gene03843:CDS | 45.0% |
| !! | GCAGTCGCTTTCCATTTTGA+TGG | - | chr4.1:44900223-44900242 | MS.gene03843:CDS | 45.0% |
| !!! | TTGTTGTTTTGGAGCTTGGC+TGG | - | chr4.1:44901035-44901054 | MS.gene03843:CDS | 45.0% |
| AAGGGATGTGGTCATAGCCT+CGG | - | chr4.1:44900055-44900074 | MS.gene03843:CDS | 50.0% | |
| AATGGAAAGCGACTGCAACC+CGG | + | chr4.1:44900219-44900238 | None:intergenic | 50.0% | |
| ATCCCATCTCAAGGCTGCAA+GGG | - | chr4.1:44900037-44900056 | MS.gene03843:CDS | 50.0% | |
| ATCCCTTGCAGCCTTGAGAT+GGG | + | chr4.1:44900042-44900061 | None:intergenic | 50.0% | |
| ATTCGGCTCAACCCCAACAA+TGG | + | chr4.1:44900411-44900430 | None:intergenic | 50.0% | |
| CATCAGCTCAACCATGGATG+TGG | + | chr4.1:44901197-44901216 | None:intergenic | 50.0% | |
| CATCCATGGTTGAGCTGATG+AGG | - | chr4.1:44901197-44901216 | MS.gene03843:CDS | 50.0% | |
| CCATTTCTTGCATGTTGCCG+AGG | + | chr4.1:44900075-44900094 | None:intergenic | 50.0% | |
| CCTCGGCAACATGCAAGAAA+TGG | - | chr4.1:44900072-44900091 | MS.gene03843:CDS | 50.0% | |
| CGGCTTCTGCTGTTATTGCT+TGG | - | chr4.1:44900264-44900283 | MS.gene03843:CDS | 50.0% | |
| GGGTTGAGCCGAATTATCAG+AGG | - | chr4.1:44900417-44900436 | MS.gene03843:CDS | 50.0% | |
| GGTCGAGAATCTTGAGAGTG+TGG | - | chr4.1:44900781-44900800 | MS.gene03843:CDS | 50.0% | |
| GTGTCCGAGGATTGAAGCTT+TGG | - | chr4.1:44900514-44900533 | MS.gene03843:CDS | 50.0% | |
| TAATTGCCTCAGAGTCTCCC+TGG | + | chr4.1:44900300-44900319 | None:intergenic | 50.0% | |
| TATCCCATCTCAAGGCTGCA+AGG | - | chr4.1:44900036-44900055 | MS.gene03843:CDS | 50.0% | |
| TCTCCTCATCAGCTCAACCA+TGG | + | chr4.1:44901203-44901222 | None:intergenic | 50.0% | |
| ! | GACGGGTCGTTGATAAATCG+CGG | + | chr4.1:44900160-44900179 | None:intergenic | 50.0% |
| ! | GATTTGTGGGAGGCATAAGC+TGG | - | chr4.1:44900361-44900380 | MS.gene03843:CDS | 50.0% |
| !! | CATTCACGGTGTTGTTTCCG+AGG | - | chr4.1:44901132-44901151 | MS.gene03843:CDS | 50.0% |
| CATCCCTTGCAGCCTTGAGA+TGG | + | chr4.1:44900043-44900062 | None:intergenic | 55.0% | |
| TCTCAAGGCTGCAAGGGATG+TGG | - | chr4.1:44900043-44900062 | MS.gene03843:CDS | 55.0% | |
| TGTACACCAGGGAGACTCTG+AGG | - | chr4.1:44900291-44900310 | MS.gene03843:CDS | 55.0% | |
| ! | CTTTTCTCCCAGTGGGTCGA+GGG | - | chr4.1:44901073-44901092 | MS.gene03843:CDS | 55.0% |
| ! | TCTTTTCTCCCAGTGGGTCG+AGG | - | chr4.1:44901072-44901091 | MS.gene03843:CDS | 55.0% |
| ! | TTTTCTCCCAGTGGGTCGAG+GGG | - | chr4.1:44901074-44901093 | MS.gene03843:CDS | 55.0% |
| !!! | TTTTGGTGTCTGCGTGTCCG+AGG | - | chr4.1:44900501-44900520 | MS.gene03843:CDS | 55.0% |
| AAGCAGCCCCTCGACCCACT+GGG | + | chr4.1:44901083-44901102 | None:intergenic | 65.0% | |
| TAAGCAGCCCCTCGACCCAC+TGG | + | chr4.1:44901084-44901103 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 44899996 | 44901258 | 44899996 | ID=MS.gene03843 |
| chr4.1 | mRNA | 44899996 | 44901258 | 44899996 | ID=MS.gene03843.t1;Parent=MS.gene03843 |
| chr4.1 | exon | 44899996 | 44901258 | 44899996 | ID=MS.gene03843.t1.exon1;Parent=MS.gene03843.t1 |
| chr4.1 | CDS | 44899996 | 44901258 | 44899996 | ID=cds.MS.gene03843.t1;Parent=MS.gene03843.t1 |
| Gene Sequence |
| Protein sequence |
