Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038526.t1 | XP_013446003.1 | 93.7 | 506 | 32 | 0 | 1 | 506 | 1 | 506 | 8.50E-278 | 965.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038526.t1 | O80763 | 55.2 | 565 | 183 | 3 | 11 | 506 | 15 | 578 | 4.1e-180 | 632.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038526.t1 | A0A072U2K8 | 93.7 | 506 | 32 | 0 | 1 | 506 | 1 | 506 | 6.1e-278 | 965.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038526 | MS.gene33593 | PPI |
| MS.gene038526 | MS.gene026627 | PPI |
| MS.gene038526 | MS.gene59310 | PPI |
| MS.gene038526 | MS.gene026628 | PPI |
| MS.gene038526 | MS.gene63007 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038526.t1 | MTR_8g064840 | 93.676 | 506 | 32 | 0 | 1 | 506 | 1 | 506 | 0.0 | 969 |
| MS.gene038526.t1 | MTR_8g064810 | 85.744 | 484 | 69 | 0 | 1 | 484 | 1 | 484 | 0.0 | 851 |
| MS.gene038526.t1 | MTR_8g064810 | 37.389 | 337 | 208 | 3 | 166 | 501 | 6 | 340 | 6.06e-67 | 226 |
| MS.gene038526.t1 | MTR_3g114530 | 41.009 | 317 | 173 | 5 | 175 | 477 | 40 | 356 | 1.65e-79 | 255 |
| MS.gene038526.t1 | MTR_3g114530 | 40.506 | 316 | 173 | 4 | 15 | 315 | 40 | 355 | 2.31e-76 | 246 |
| MS.gene038526.t1 | MTR_3g114530 | 44.586 | 157 | 74 | 4 | 12 | 156 | 201 | 356 | 3.54e-34 | 134 |
| MS.gene038526.t1 | MTR_3g109120 | 38.924 | 316 | 191 | 2 | 175 | 490 | 19 | 332 | 4.68e-78 | 250 |
| MS.gene038526.t1 | MTR_3g109120 | 34.043 | 329 | 212 | 5 | 9 | 335 | 13 | 338 | 3.64e-62 | 208 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038526.t1 | AT1G60420 | 62.526 | 475 | 177 | 1 | 9 | 483 | 13 | 486 | 0.0 | 631 |
| MS.gene038526.t1 | AT1G60420 | 38.922 | 334 | 201 | 3 | 170 | 502 | 14 | 345 | 3.04e-70 | 235 |
| MS.gene038526.t1 | AT1G60420 | 43.293 | 164 | 89 | 3 | 329 | 490 | 13 | 174 | 2.15e-36 | 142 |
| MS.gene038526.t1 | AT4G31240 | 38.871 | 319 | 193 | 2 | 172 | 490 | 17 | 333 | 8.63e-74 | 239 |
| MS.gene038526.t1 | AT4G31240 | 34.177 | 316 | 204 | 4 | 11 | 324 | 16 | 329 | 1.95e-63 | 212 |
| MS.gene038526.t1 | AT4G31240 | 38.871 | 319 | 193 | 2 | 172 | 490 | 17 | 333 | 8.63e-74 | 239 |
| MS.gene038526.t1 | AT4G31240 | 34.177 | 316 | 204 | 4 | 11 | 324 | 16 | 329 | 1.95e-63 | 212 |
Find 122 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACATGAAACAATTCTTTA+AGG | 0.135448 | 8.4:+36816592 | None:intergenic |
| TGAACCCTTTCTAATGTAAA+AGG | 0.136770 | 8.4:+36816474 | None:intergenic |
| CGAGATCTGGTTGGGCTCTA+TGG | 0.142538 | 8.4:-36815317 | MS.gene038526:CDS |
| CTCCCCTCCTTCGTTGTTAT+TGG | 0.216122 | 8.4:-36815965 | MS.gene038526:CDS |
| ATCACAAACCCATCCATCTT+TGG | 0.250320 | 8.4:+36815217 | None:intergenic |
| GATTCCGGTGTCAGAATTAA+AGG | 0.269414 | 8.4:-36815639 | MS.gene038526:CDS |
| CTTGGAAAAGTAGTTATTAA+AGG | 0.274755 | 8.4:+36816662 | None:intergenic |
| GTTCACATTATCCGTGAATA+TGG | 0.278551 | 8.4:-36816510 | MS.gene038526:CDS |
| TGACTCTTCCTCATCATCTA+AGG | 0.282702 | 8.4:+36816081 | None:intergenic |
| TGTCTTGTGTCTTGATCTTA+AGG | 0.293186 | 8.4:+36815537 | None:intergenic |
| CTTGCATTGATTGATGAAAC+TGG | 0.298539 | 8.4:-36816555 | MS.gene038526:CDS |
| TCCCCTCCTTCGTTGTTATT+GGG | 0.319196 | 8.4:-36815964 | MS.gene038526:CDS |
| AAACTTGTTTGAAACTAGTT+AGG | 0.330734 | 8.4:-36816006 | MS.gene038526:CDS |
| AAAGAATTGTTTCATGTAAA+CGG | 0.340648 | 8.4:-36816588 | MS.gene038526:CDS |
| AGTCGTAAATTCAAGGTATC+TGG | 0.347450 | 8.4:-36815395 | MS.gene038526:CDS |
| TCAAACACTTGAGTCAGTTT+TGG | 0.355313 | 8.4:-36815816 | MS.gene038526:CDS |
| AGGTATGCATCAATGAGTTT+TGG | 0.355397 | 8.4:+36815557 | None:intergenic |
| CCAATAGCGATGGCAGATTC+TGG | 0.359152 | 8.4:-36817477 | None:intergenic |
| CTCTCCCAAGGGTGACTTTG+AGG | 0.370317 | 8.4:-36816718 | MS.gene038526:CDS |
| CCAGTCCTTGAGATCGATAT+TGG | 0.378969 | 8.4:-36816415 | MS.gene038526:CDS |
| CCATGGCTGGCACTTCCCTT+TGG | 0.383022 | 8.4:-36815440 | MS.gene038526:CDS |
| AACATGCAGATTTCAGGCTT+TGG | 0.384409 | 8.4:+36815181 | None:intergenic |
| GCTATTTAATGAAAAGCTTA+AGG | 0.386865 | 8.4:-36816158 | MS.gene038526:CDS |
| TTTGGGCTTCTCTCCTTCCT+TGG | 0.391386 | 8.4:+36815235 | None:intergenic |
| TCACAAACCCATCCATCTTT+GGG | 0.399851 | 8.4:+36815218 | None:intergenic |
| TCTTCGAAACACCGGCGATC+AGG | 0.402540 | 8.4:-36817397 | MS.gene038526:intron |
| CACGAAAGAGGCTCGAGATC+TGG | 0.405594 | 8.4:-36815330 | MS.gene038526:CDS |
| GAGATCTGGTTGGGCTCTAT+GGG | 0.414235 | 8.4:-36815316 | MS.gene038526:CDS |
| GGTCCGATCGCCACAAGCTT+GGG | 0.414337 | 8.4:+36815368 | None:intergenic |
| TCAATGGCATCAGCGGCATT+AGG | 0.420216 | 8.4:+36815920 | None:intergenic |
| TTCGTTGTTATTGGGCCAGA+TGG | 0.439861 | 8.4:-36815956 | MS.gene038526:CDS |
| GGGAAAGTTGTTACTGAAGA+TGG | 0.440804 | 8.4:-36816534 | MS.gene038526:CDS |
| TTTCCCTCAATCTCAGAGAT+AGG | 0.443663 | 8.4:+36816226 | None:intergenic |
| AGCTTGAAGGGAAAGAAACT+TGG | 0.454943 | 8.4:-36816816 | MS.gene038526:CDS |
| TCCTCTACTTCTCAGCCCAC+TGG | 0.456326 | 8.4:-36815604 | MS.gene038526:CDS |
| GAACCCTTTCTAATGTAAAA+GGG | 0.459465 | 8.4:+36816475 | None:intergenic |
| ATTCCGGTGTCAGAATTAAA+GGG | 0.462516 | 8.4:-36815638 | MS.gene038526:CDS |
| TGGTCCGATCGCCACAAGCT+TGG | 0.462521 | 8.4:+36815367 | None:intergenic |
| TTAGCTTACTTCATTTCTAT+CGG | 0.465037 | 8.4:+36816362 | None:intergenic |
| TTGGTTATCCTTGCCTCTCA+AGG | 0.468978 | 8.4:-36816032 | MS.gene038526:CDS |
| GAGCCTCTTTCGTGACAGTC+AGG | 0.476275 | 8.4:+36815339 | None:intergenic |
| GATACCTATCTCTGAGATTG+AGG | 0.476914 | 8.4:-36816230 | MS.gene038526:CDS |
| ATTATCCGTGAATATGGAAC+TGG | 0.477075 | 8.4:-36816504 | MS.gene038526:CDS |
| AAGTGTTTGAGATGCCTCCT+TGG | 0.478467 | 8.4:+36815829 | None:intergenic |
| TGGTCTTCATCTCTAGTGAC+AGG | 0.485675 | 8.4:-36815499 | MS.gene038526:CDS |
| GGAGAGAATAAAAGAAATAG+AGG | 0.489082 | 8.4:-36815270 | MS.gene038526:CDS |
| AAGAGGCTCGAGATCTGGTT+GGG | 0.493773 | 8.4:-36815325 | MS.gene038526:CDS |
| AACAACCTCAAAGTCACCCT+TGG | 0.495759 | 8.4:+36816713 | None:intergenic |
| ATTTCTAAGTCGTAAATTCA+AGG | 0.495892 | 8.4:-36815402 | MS.gene038526:CDS |
| AGGAATTAGAAAGCGTGCCT+TGG | 0.503159 | 8.4:-36816051 | MS.gene038526:CDS |
| AGAGTTGAAAGATATAGAAG+AGG | 0.503305 | 8.4:-36816451 | MS.gene038526:CDS |
| GCTGATGCCATTGAGGATCA+TGG | 0.504159 | 8.4:-36815911 | MS.gene038526:CDS |
| GATAGCCAGCCATGGCATCT+TGG | 0.504355 | 8.4:+36816644 | None:intergenic |
| TTCGTGACAGTCAGGCCACT+TGG | 0.508645 | 8.4:+36815347 | None:intergenic |
| ATCCTCCAGTTCCATATTCA+CGG | 0.515188 | 8.4:+36816499 | None:intergenic |
| GAGATTGAGGGAAAGACAGT+TGG | 0.525484 | 8.4:-36816217 | MS.gene038526:CDS |
| ATTCCCAAGCTTGTGGCGAT+CGG | 0.529129 | 8.4:-36815371 | MS.gene038526:CDS |
| ACCAGTGGGCTGAGAAGTAG+AGG | 0.529711 | 8.4:+36815603 | None:intergenic |
| TTTATTCTCTCCTCAGTGAA+AGG | 0.534022 | 8.4:+36815281 | None:intergenic |
| ATACCTATCTCTGAGATTGA+GGG | 0.534296 | 8.4:-36816229 | MS.gene038526:CDS |
| GACTTTCTTCTTCGAAACAC+CGG | 0.534369 | 8.4:-36817405 | MS.gene038526:CDS |
| GAGAGAAGCCCAAAGATGGA+TGG | 0.538351 | 8.4:-36815226 | MS.gene038526:CDS |
| GTCTATCCCATGATCCTCAA+TGG | 0.543337 | 8.4:+36815904 | None:intergenic |
| CATTGAGAAAGATGGGAAGA+AGG | 0.544022 | 8.4:-36815771 | MS.gene038526:intron |
| GGAAAATGGGGAGAACTTTG+AGG | 0.545659 | 8.4:-36816116 | MS.gene038526:CDS |
| GGCCCAATAACAACGAAGGA+GGG | 0.547821 | 8.4:+36815962 | None:intergenic |
| AAAGAGGCTCGAGATCTGGT+TGG | 0.548388 | 8.4:-36815326 | MS.gene038526:CDS |
| AGTGTCTCTGAATCAGAAAG+TGG | 0.548817 | 8.4:+36816621 | None:intergenic |
| GAAGGAGAGAAGCCCAAAGA+TGG | 0.550367 | 8.4:-36815230 | MS.gene038526:CDS |
| CTGATGCCATTGAGGATCAT+GGG | 0.553965 | 8.4:-36815910 | MS.gene038526:CDS |
| TGGCCTGACTGTCACGAAAG+AGG | 0.559786 | 8.4:-36815342 | MS.gene038526:CDS |
| ACAACCTCAAAGTCACCCTT+GGG | 0.560092 | 8.4:+36816714 | None:intergenic |
| TCGTTGTTATTGGGCCAGAT+GGG | 0.561804 | 8.4:-36815955 | MS.gene038526:CDS |
| AGACAATGATGCGCTTGAAG+TGG | 0.563569 | 8.4:-36815519 | MS.gene038526:CDS |
| ATATAGAAGAGGAAGCTAAG+AGG | 0.564358 | 8.4:-36816440 | MS.gene038526:CDS |
| ATCATTCACTCCAACGTTGG+TGG | 0.565663 | 8.4:-36816757 | MS.gene038526:CDS |
| CCGATCATTCACTCCAACGT+TGG | 0.572955 | 8.4:-36816760 | MS.gene038526:CDS |
| TAATGCCGCTGATGCCATTG+AGG | 0.573168 | 8.4:-36815918 | MS.gene038526:CDS |
| GACTCTTCCTCATCATCTAA+GGG | 0.575321 | 8.4:+36816082 | None:intergenic |
| TCGAAGAAGAAAGTCTCTAT+CGG | 0.577416 | 8.4:+36817413 | None:intergenic |
| ATTCACTCCAACGTTGGTGG+AGG | 0.578411 | 8.4:-36816754 | MS.gene038526:CDS |
| GTACAATGAACTCTCTCCCA+AGG | 0.579038 | 8.4:-36816730 | MS.gene038526:CDS |
| CCAATATCGATCTCAAGGAC+TGG | 0.581021 | 8.4:+36816415 | None:intergenic |
| AGAGAAGCCCAAAGATGGAT+GGG | 0.583984 | 8.4:-36815225 | MS.gene038526:CDS |
| GCCCAATAACAACGAAGGAG+GGG | 0.585041 | 8.4:+36815963 | None:intergenic |
| TTCCCCTTTAATTCTGACAC+CGG | 0.586881 | 8.4:+36815635 | None:intergenic |
| GTTTATACCCTTAGATGATG+AGG | 0.588642 | 8.4:-36816089 | MS.gene038526:CDS |
| ATCTGGCATTCCCAAGCTTG+TGG | 0.593565 | 8.4:-36815378 | MS.gene038526:CDS |
| TTTGGAAGAAACTCACGGCA+TGG | 0.593881 | 8.4:+36815575 | None:intergenic |
| ATGATCCTCAATGGCATCAG+CGG | 0.595653 | 8.4:+36815913 | None:intergenic |
| AGAGACCAATATCGATCTCA+AGG | 0.596132 | 8.4:+36816410 | None:intergenic |
| CGATGAAATAGCAAAGGCCA+AGG | 0.596494 | 8.4:-36815846 | MS.gene038526:CDS |
| AGTCTCTATCGGAAGAAGAG+AGG | 0.598357 | 8.4:+36817424 | None:intergenic |
| CCAACGTTGGAGTGAATGAT+CGG | 0.598716 | 8.4:+36816760 | None:intergenic |
| GGATGATATCACAAAGTCAC+GGG | 0.601687 | 8.4:+36816383 | None:intergenic |
| ATCCGTGAATATGGAACTGG+AGG | 0.602853 | 8.4:-36816501 | MS.gene038526:CDS |
| CGGATGATATCACAAAGTCA+CGG | 0.603753 | 8.4:+36816382 | None:intergenic |
| ATTTAATGAAAAGCTTAAGG+AGG | 0.604615 | 8.4:-36816155 | MS.gene038526:CDS |
| AAAGATGGATGGGTTTGTGA+TGG | 0.605439 | 8.4:-36815215 | MS.gene038526:CDS |
| TGAGGAAGAGTCATTCAAGA+AGG | 0.612234 | 8.4:-36816071 | MS.gene038526:CDS |
| TCATCAATCAATGCAAGATG+AGG | 0.612326 | 8.4:+36816561 | None:intergenic |
| TTGCATTGATTGATGAAACT+GGG | 0.612878 | 8.4:-36816554 | MS.gene038526:CDS |
| CACGGCATGGAGGACACCAG+TGG | 0.616281 | 8.4:+36815588 | None:intergenic |
| CCAAAGGGAAGTGCCAGCCA+TGG | 0.621888 | 8.4:+36815440 | None:intergenic |
| TGGCCCAATAACAACGAAGG+AGG | 0.624367 | 8.4:+36815961 | None:intergenic |
| TACAATGAACTCTCTCCCAA+GGG | 0.628684 | 8.4:-36816729 | MS.gene038526:CDS |
| ACGGCATGGAGGACACCAGT+GGG | 0.635887 | 8.4:+36815589 | None:intergenic |
| ATCTGGCCCAATAACAACGA+AGG | 0.643673 | 8.4:+36815958 | None:intergenic |
| GTGTCTCTGAATCAGAAAGT+GGG | 0.644415 | 8.4:+36816622 | None:intergenic |
| TTCCGGTGTCAGAATTAAAG+GGG | 0.646538 | 8.4:-36815637 | MS.gene038526:CDS |
| TGAACTCGATGAAATAGCAA+AGG | 0.647912 | 8.4:-36815852 | MS.gene038526:CDS |
| AGTGGGCTGAGAAGTAGAGG+AGG | 0.655615 | 8.4:+36815606 | None:intergenic |
| GAAAGTGGGATAGCCAGCCA+TGG | 0.663948 | 8.4:+36816636 | None:intergenic |
| CTTGTGGCGATCGGACCAAG+TGG | 0.664406 | 8.4:-36815362 | MS.gene038526:CDS |
| TTGTACACCTCCACCAACGT+TGG | 0.673259 | 8.4:+36816747 | None:intergenic |
| AGATCTGGTTGGGCTCTATG+GGG | 0.677010 | 8.4:-36815315 | MS.gene038526:CDS |
| TGAAATAGCAAAGGCCAAGG+AGG | 0.686521 | 8.4:-36815843 | MS.gene038526:CDS |
| GGTCTTCATCTCTAGTGACA+GGG | 0.686873 | 8.4:-36815498 | MS.gene038526:CDS |
| TTGAGAGGCAAGGATAACCA+AGG | 0.706344 | 8.4:+36816034 | None:intergenic |
| GTTGGAGTGAATGATCGGCA+CGG | 0.721516 | 8.4:+36816765 | None:intergenic |
| GGAAGAAACTCACGGCATGG+AGG | 0.726391 | 8.4:+36815578 | None:intergenic |
| AGATGCTTATCCTTTCACTG+AGG | 0.785205 | 8.4:-36815291 | MS.gene038526:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAAATATAGATGTAC+TGG | - | chr8.4:36816925-36816944 | MS.gene038526:intron | 15.0% |
| !! | TTAATAACGAATTAAAAAGA+GGG | + | chr8.4:36816977-36816996 | None:intergenic | 15.0% |
| !! | TTAATTCAATATGATATAGT+AGG | - | chr8.4:36816326-36816345 | MS.gene038526:intron | 15.0% |
| !! | AAAGAATTGTTTCATGTAAA+CGG | - | chr8.4:36816073-36816092 | MS.gene038526:CDS | 20.0% |
| !! | AACAAACAGATAATAACTAA+AGG | + | chr8.4:36816354-36816373 | None:intergenic | 20.0% |
| !! | ATTTCTTCCACATAAAATAA+AGG | + | chr8.4:36815354-36815373 | None:intergenic | 20.0% |
| !! | GTTAATAACGAATTAAAAAG+AGG | + | chr8.4:36816978-36816997 | None:intergenic | 20.0% |
| !! | TTACATGAAACAATTCTTTA+AGG | + | chr8.4:36816072-36816091 | None:intergenic | 20.0% |
| !! | TTTCTTCCACATAAAATAAA+GGG | + | chr8.4:36815353-36815372 | None:intergenic | 20.0% |
| !!! | GTTTTTGTTATTGTATATTG+TGG | - | chr8.4:36815730-36815749 | MS.gene038526:intron | 20.0% |
| !!! | TTAATTATGTGATTTTCTCA+AGG | - | chr8.4:36815555-36815574 | MS.gene038526:CDS | 20.0% |
| !!! | TTTAATCCCTTTATTTTATG+TGG | - | chr8.4:36815344-36815363 | MS.gene038526:CDS | 20.0% |
| ! | ATAATACCGATGAAATATTG+TGG | - | chr8.4:36815781-36815800 | MS.gene038526:CDS | 25.0% |
| ! | ATGAGTGTAATTATATGTGA+CGG | + | chr8.4:36815530-36815549 | None:intergenic | 25.0% |
| ! | ATTTAATGAAAAGCTTAAGG+AGG | - | chr8.4:36816506-36816525 | MS.gene038526:CDS | 25.0% |
| ! | ATTTCTAAGTCGTAAATTCA+AGG | - | chr8.4:36817259-36817278 | MS.gene038526:intron | 25.0% |
| ! | CTTGGAAAAGTAGTTATTAA+AGG | + | chr8.4:36816002-36816021 | None:intergenic | 25.0% |
| ! | GCTATTTAATGAAAAGCTTA+AGG | - | chr8.4:36816503-36816522 | MS.gene038526:CDS | 25.0% |
| ! | TTAGCTTACTTCATTTCTAT+CGG | + | chr8.4:36816302-36816321 | None:intergenic | 25.0% |
| !! | AAACTTGTTTGAAACTAGTT+AGG | - | chr8.4:36816655-36816674 | MS.gene038526:CDS | 25.0% |
| !! | ATACCCTTTTACATTAGAAA+GGG | - | chr8.4:36816183-36816202 | MS.gene038526:CDS | 25.0% |
| !! | ATTTTGTCATTGAGAAAGAT+GGG | - | chr8.4:36816883-36816902 | MS.gene038526:intron | 25.0% |
| !! | GTAAAAATTGATAGCTTGAA+GGG | - | chr8.4:36815833-36815852 | MS.gene038526:CDS | 25.0% |
| !! | GTTTTACTTAAGTTTTCATG+TGG | - | chr8.4:36815702-36815721 | MS.gene038526:intron | 25.0% |
| !! | TTTTCATTAAATAGCATGCA+TGG | + | chr8.4:36816498-36816517 | None:intergenic | 25.0% |
| !!! | GTTTTTATTTTTCAGCATCA+TGG | - | chr8.4:36815867-36815886 | MS.gene038526:CDS | 25.0% |
| AATTAAAAAGAGGGAGTGAT+GGG | + | chr8.4:36816968-36816987 | None:intergenic | 30.0% | |
| ACAAAAAGCTGAAGGAAAAT+GGG | - | chr8.4:36816532-36816551 | MS.gene038526:CDS | 30.0% | |
| AGAGTTGAAAGATATAGAAG+AGG | - | chr8.4:36816210-36816229 | MS.gene038526:CDS | 30.0% | |
| ATAGCACCACAATATTTCAT+CGG | + | chr8.4:36815790-36815809 | None:intergenic | 30.0% | |
| CATCAAAGTAAAAGTCAGAT+TGG | + | chr8.4:36816402-36816421 | None:intergenic | 30.0% | |
| CTTATGACAATTGTTTGAAG+TGG | - | chr8.4:36815753-36815772 | MS.gene038526:intron | 30.0% | |
| GAACCCTTTCTAATGTAAAA+GGG | + | chr8.4:36816189-36816208 | None:intergenic | 30.0% | |
| GGAGAGAATAAAAGAAATAG+AGG | - | chr8.4:36817391-36817410 | MS.gene038526:intron | 30.0% | |
| TACAAAAAGCTGAAGGAAAA+TGG | - | chr8.4:36816531-36816550 | MS.gene038526:CDS | 30.0% | |
| TGAACCCTTTCTAATGTAAA+AGG | + | chr8.4:36816190-36816209 | None:intergenic | 30.0% | |
| TTCCGCAAAAAATTCATCAA+AGG | + | chr8.4:36817198-36817217 | None:intergenic | 30.0% | |
| ! | ATGTGATTTTCTCAAGGTAT+TGG | - | chr8.4:36815561-36815580 | MS.gene038526:CDS | 30.0% |
| ! | GAAAACTTTTCAGTAGTGAA+TGG | + | chr8.4:36816789-36816808 | None:intergenic | 30.0% |
| ! | GATACCCTTTTACATTAGAA+AGG | - | chr8.4:36816182-36816201 | MS.gene038526:CDS | 30.0% |
| ! | GATTTTGTCATTGAGAAAGA+TGG | - | chr8.4:36816882-36816901 | MS.gene038526:intron | 30.0% |
| ! | GGTAAAAATTGATAGCTTGA+AGG | - | chr8.4:36815832-36815851 | MS.gene038526:CDS | 30.0% |
| !! | TGAATCACAACTACTTTTAC+CGG | + | chr8.4:36815611-36815630 | None:intergenic | 30.0% |
| !! | TTGCATTGATTGATGAAACT+GGG | - | chr8.4:36816107-36816126 | MS.gene038526:CDS | 30.0% |
| !!! | ATGTCATTTTCTCATGATGT+CGG | - | chr8.4:36815452-36815471 | MS.gene038526:CDS | 30.0% |
| !!! | CTCCTTTGATGAATTTTTTG+CGG | - | chr8.4:36817193-36817212 | MS.gene038526:intron | 30.0% |
| !!! | TCTCATATTTTGAAACTCAC+AGG | - | chr8.4:36815811-36815830 | MS.gene038526:CDS | 30.0% |
| ATATAGAAGAGGAAGCTAAG+AGG | - | chr8.4:36816221-36816240 | MS.gene038526:CDS | 35.0% | |
| ATTAAAAAGAGGGAGTGATG+GGG | + | chr8.4:36816967-36816986 | None:intergenic | 35.0% | |
| ATTATCCGTGAATATGGAAC+TGG | - | chr8.4:36816157-36816176 | MS.gene038526:CDS | 35.0% | |
| CAAAAAGCTGAAGGAAAATG+GGG | - | chr8.4:36816533-36816552 | MS.gene038526:CDS | 35.0% | |
| GAATTAAAAAGAGGGAGTGA+TGG | + | chr8.4:36816969-36816988 | None:intergenic | 35.0% | |
| GTAATTATATGTGACGGTGT+GGG | + | chr8.4:36815524-36815543 | None:intergenic | 35.0% | |
| GTTCACATTATCCGTGAATA+TGG | - | chr8.4:36816151-36816170 | MS.gene038526:CDS | 35.0% | |
| GTTTATACCCTTAGATGATG+AGG | - | chr8.4:36816572-36816591 | MS.gene038526:CDS | 35.0% | |
| TAAATGAACCACATGATCTG+TGG | + | chr8.4:36816379-36816398 | None:intergenic | 35.0% | |
| TCATCAATCAATGCAAGATG+AGG | + | chr8.4:36816103-36816122 | None:intergenic | 35.0% | |
| TCGAAGAAGAAAGTCTCTAT+CGG | + | chr8.4:36815251-36815270 | None:intergenic | 35.0% | |
| TGAACTCGATGAAATAGCAA+AGG | - | chr8.4:36816809-36816828 | MS.gene038526:CDS | 35.0% | |
| TGTAATTATATGTGACGGTG+TGG | + | chr8.4:36815525-36815544 | None:intergenic | 35.0% | |
| TGTCTTGTGTCTTGATCTTA+AGG | + | chr8.4:36817127-36817146 | None:intergenic | 35.0% | |
| TTTATCTCCATTGCAGATTC+CGG | - | chr8.4:36817007-36817026 | MS.gene038526:intron | 35.0% | |
| TTTATTCTCTCCTCAGTGAA+AGG | + | chr8.4:36817383-36817402 | None:intergenic | 35.0% | |
| ! | AGGTATGCATCAATGAGTTT+TGG | + | chr8.4:36817107-36817126 | None:intergenic | 35.0% |
| ! | AGTCGTAAATTCAAGGTATC+TGG | - | chr8.4:36817266-36817285 | MS.gene038526:intron | 35.0% |
| ! | ATTCCGGTGTCAGAATTAAA+GGG | - | chr8.4:36817023-36817042 | MS.gene038526:intron | 35.0% |
| ! | TAAACTTTTTACCTGATCGC+CGG | + | chr8.4:36815278-36815297 | None:intergenic | 35.0% |
| ! | TCAAACACTTGAGTCAGTTT+TGG | - | chr8.4:36816845-36816864 | MS.gene038526:intron | 35.0% |
| !! | AAACAAGTTTTGTCCTTGAG+AGG | + | chr8.4:36816645-36816664 | None:intergenic | 35.0% |
| !! | ATACCTATCTCTGAGATTGA+GGG | - | chr8.4:36816432-36816451 | MS.gene038526:CDS | 35.0% |
| !! | CTTGCATTGATTGATGAAAC+TGG | - | chr8.4:36816106-36816125 | MS.gene038526:CDS | 35.0% |
| !! | TATTTTTCAGCATCATGGTG+TGG | - | chr8.4:36815872-36815891 | MS.gene038526:CDS | 35.0% |
| !!! | AATTTTTTGCGGAAATGCCA+TGG | - | chr8.4:36817204-36817223 | MS.gene038526:intron | 35.0% |
| !!! | TGAGTTTTGGAAGAAACTCA+CGG | + | chr8.4:36817094-36817113 | None:intergenic | 35.0% |
| AGAGACCAATATCGATCTCA+AGG | + | chr8.4:36816254-36816273 | None:intergenic | 40.0% | |
| AGATGCTTATCCTTTCACTG+AGG | - | chr8.4:36817370-36817389 | MS.gene038526:intron | 40.0% | |
| AGCTTGAAGGGAAAGAAACT+TGG | - | chr8.4:36815845-36815864 | MS.gene038526:CDS | 40.0% | |
| AGTGTCTCTGAATCAGAAAG+TGG | + | chr8.4:36816043-36816062 | None:intergenic | 40.0% | |
| ATCACAAACCCATCCATCTT+TGG | + | chr8.4:36817447-36817466 | None:intergenic | 40.0% | |
| ATCCTCCAGTTCCATATTCA+CGG | + | chr8.4:36816165-36816184 | None:intergenic | 40.0% | |
| CATTGAGAAAGATGGGAAGA+AGG | - | chr8.4:36816890-36816909 | MS.gene038526:intron | 40.0% | |
| CGGATGATATCACAAAGTCA+CGG | + | chr8.4:36816282-36816301 | None:intergenic | 40.0% | |
| GACTCTTCCTCATCATCTAA+GGG | + | chr8.4:36816582-36816601 | None:intergenic | 40.0% | |
| GACTTTCTTCTTCGAAACAC+CGG | - | chr8.4:36815256-36815275 | MS.gene038526:CDS | 40.0% | |
| GGAGGTTTACAAAAAGCTGA+AGG | - | chr8.4:36816524-36816543 | MS.gene038526:CDS | 40.0% | |
| GGATGATATCACAAAGTCAC+GGG | + | chr8.4:36816281-36816300 | None:intergenic | 40.0% | |
| GGGAAAGTTGTTACTGAAGA+TGG | - | chr8.4:36816127-36816146 | MS.gene038526:CDS | 40.0% | |
| GTAATTACACGTGTCAGTGT+CGG | + | chr8.4:36815424-36815443 | None:intergenic | 40.0% | |
| GTGTCTCTGAATCAGAAAGT+GGG | + | chr8.4:36816042-36816061 | None:intergenic | 40.0% | |
| TACAATGAACTCTCTCCCAA+GGG | - | chr8.4:36815932-36815951 | MS.gene038526:CDS | 40.0% | |
| TCACAAACCCATCCATCTTT+GGG | + | chr8.4:36817446-36817465 | None:intergenic | 40.0% | |
| TGACTCTTCCTCATCATCTA+AGG | + | chr8.4:36816583-36816602 | None:intergenic | 40.0% | |
| TGAGGAAGAGTCATTCAAGA+AGG | - | chr8.4:36816590-36816609 | MS.gene038526:CDS | 40.0% | |
| TTCCCCTTTAATTCTGACAC+CGG | + | chr8.4:36817029-36817048 | None:intergenic | 40.0% | |
| TTTCCCTCAATCTCAGAGAT+AGG | + | chr8.4:36816438-36816457 | None:intergenic | 40.0% | |
| TTTGTTTGCCACAGATCATG+TGG | - | chr8.4:36816368-36816387 | MS.gene038526:intron | 40.0% | |
| ! | AAAGATGGATGGGTTTGTGA+TGG | - | chr8.4:36817446-36817465 | MS.gene038526:CDS | 40.0% |
| ! | GATTCCGGTGTCAGAATTAA+AGG | - | chr8.4:36817022-36817041 | MS.gene038526:intron | 40.0% |
| ! | TCATTTTCTCATGATGTCGG+TGG | - | chr8.4:36815455-36815474 | MS.gene038526:CDS | 40.0% |
| ! | TCTTTTCTCGAGTCACCAAA+GGG | + | chr8.4:36817239-36817258 | None:intergenic | 40.0% |
| ! | TTCCGGTGTCAGAATTAAAG+GGG | - | chr8.4:36817024-36817043 | MS.gene038526:intron | 40.0% |
| ! | TTCTTTTCTCGAGTCACCAA+AGG | + | chr8.4:36817240-36817259 | None:intergenic | 40.0% |
| !! | ACTACTTTTCCAAGATGCCA+TGG | - | chr8.4:36816008-36816027 | MS.gene038526:CDS | 40.0% |
| !! | GATACCTATCTCTGAGATTG+AGG | - | chr8.4:36816431-36816450 | MS.gene038526:CDS | 40.0% |
| AACAACCTCAAAGTCACCCT+TGG | + | chr8.4:36815951-36815970 | None:intergenic | 45.0% | |
| ACAACCTCAAAGTCACCCTT+GGG | + | chr8.4:36815950-36815969 | None:intergenic | 45.0% | |
| AGACAATGATGCGCTTGAAG+TGG | - | chr8.4:36817142-36817161 | MS.gene038526:intron | 45.0% | |
| AGAGAAGCCCAAAGATGGAT+GGG | - | chr8.4:36817436-36817455 | MS.gene038526:CDS | 45.0% | |
| AGTCTCTATCGGAAGAAGAG+AGG | + | chr8.4:36815240-36815259 | None:intergenic | 45.0% | |
| ATCATTCACTCCAACGTTGG+TGG | - | chr8.4:36815904-36815923 | MS.gene038526:CDS | 45.0% | |
| ATCCGTGAATATGGAACTGG+AGG | - | chr8.4:36816160-36816179 | MS.gene038526:CDS | 45.0% | |
| ATCTGGCCCAATAACAACGA+AGG | + | chr8.4:36816706-36816725 | None:intergenic | 45.0% | |
| ATGATCCTCAATGGCATCAG+CGG | + | chr8.4:36816751-36816770 | None:intergenic | 45.0% | |
| CCAACGTTGGAGTGAATGAT+CGG | + | chr8.4:36815904-36815923 | None:intergenic | 45.0% | |
| CCAATATCGATCTCAAGGAC+TGG | + | chr8.4:36816249-36816268 | None:intergenic | 45.0% | |
| CCAGTCCTTGAGATCGATAT+TGG | - | chr8.4:36816246-36816265 | MS.gene038526:intron | 45.0% | |
| CGATGAAATAGCAAAGGCCA+AGG | - | chr8.4:36816815-36816834 | MS.gene038526:CDS | 45.0% | |
| CTGATGCCATTGAGGATCAT+GGG | - | chr8.4:36816751-36816770 | MS.gene038526:CDS | 45.0% | |
| GAGATTGAGGGAAAGACAGT+TGG | - | chr8.4:36816444-36816463 | MS.gene038526:CDS | 45.0% | |
| GGAAAATGGGGAGAACTTTG+AGG | - | chr8.4:36816545-36816564 | MS.gene038526:CDS | 45.0% | |
| GGTCTTCATCTCTAGTGACA+GGG | - | chr8.4:36817163-36817182 | MS.gene038526:intron | 45.0% | |
| GTACAATGAACTCTCTCCCA+AGG | - | chr8.4:36815931-36815950 | MS.gene038526:CDS | 45.0% | |
| GTCTATCCCATGATCCTCAA+TGG | + | chr8.4:36816760-36816779 | None:intergenic | 45.0% | |
| GTCTGTGTATGTGTCTGTGT+AGG | - | chr8.4:36815481-36815500 | MS.gene038526:CDS | 45.0% | |
| TGAAATAGCAAAGGCCAAGG+AGG | - | chr8.4:36816818-36816837 | MS.gene038526:CDS | 45.0% | |
| TGGTCTTCATCTCTAGTGAC+AGG | - | chr8.4:36817162-36817181 | MS.gene038526:intron | 45.0% | |
| TGTCGGACACGTTTAATCTG+AGG | + | chr8.4:36815407-36815426 | None:intergenic | 45.0% | |
| TTGAGAGGCAAGGATAACCA+AGG | + | chr8.4:36816630-36816649 | None:intergenic | 45.0% | |
| TTGGTTATCCTTGCCTCTCA+AGG | - | chr8.4:36816629-36816648 | MS.gene038526:CDS | 45.0% | |
| TTTGGAAGAAACTCACGGCA+TGG | + | chr8.4:36817089-36817108 | None:intergenic | 45.0% | |
| ! | AAGTGTTTGAGATGCCTCCT+TGG | + | chr8.4:36816835-36816854 | None:intergenic | 45.0% |
| ! | AGGAATTAGAAAGCGTGCCT+TGG | - | chr8.4:36816610-36816629 | MS.gene038526:CDS | 45.0% |
| ! | GGATGAAGAGTTTTCCCATC+TGG | + | chr8.4:36816723-36816742 | None:intergenic | 45.0% |
| ! | TACTTTTACCGGATACGACG+CGG | + | chr8.4:36815600-36815619 | None:intergenic | 45.0% |
| ! | TCCCCTCCTTCGTTGTTATT+GGG | - | chr8.4:36816697-36816716 | MS.gene038526:CDS | 45.0% |
| ! | TCGTTGTTATTGGGCCAGAT+GGG | - | chr8.4:36816706-36816725 | MS.gene038526:CDS | 45.0% |
| ! | TTCGTTGTTATTGGGCCAGA+TGG | - | chr8.4:36816705-36816724 | MS.gene038526:CDS | 45.0% |
| !! | AGTTTTGTCCTTGAGAGGCA+AGG | + | chr8.4:36816640-36816659 | None:intergenic | 45.0% |
| !!! | CTTGAGTCAGTTTTGGTGTC+TGG | - | chr8.4:36816852-36816871 | MS.gene038526:intron | 45.0% |
| AAAGAGGCTCGAGATCTGGT+TGG | - | chr8.4:36817335-36817354 | MS.gene038526:intron | 50.0% | |
| AAGAGGCTCGAGATCTGGTT+GGG | - | chr8.4:36817336-36817355 | MS.gene038526:intron | 50.0% | |
| AGATCTGGTTGGGCTCTATG+GGG | - | chr8.4:36817346-36817365 | MS.gene038526:intron | 50.0% | |
| ATCTGGCATTCCCAAGCTTG+TGG | - | chr8.4:36817283-36817302 | MS.gene038526:intron | 50.0% | |
| ATTCCCAAGCTTGTGGCGAT+CGG | - | chr8.4:36817290-36817309 | MS.gene038526:intron | 50.0% | |
| CCGATCATTCACTCCAACGT+TGG | - | chr8.4:36815901-36815920 | MS.gene038526:CDS | 50.0% | |
| CTCCCCTCCTTCGTTGTTAT+TGG | - | chr8.4:36816696-36816715 | MS.gene038526:CDS | 50.0% | |
| CTGTGTAGGTATCTGACACC+AGG | - | chr8.4:36815495-36815514 | MS.gene038526:CDS | 50.0% | |
| GAAGGAGAGAAGCCCAAAGA+TGG | - | chr8.4:36817431-36817450 | MS.gene038526:CDS | 50.0% | |
| GAGAGAAGCCCAAAGATGGA+TGG | - | chr8.4:36817435-36817454 | MS.gene038526:CDS | 50.0% | |
| GAGATCTGGTTGGGCTCTAT+GGG | - | chr8.4:36817345-36817364 | MS.gene038526:intron | 50.0% | |
| GCACAAAAAGCTGCCAAGGA+AGG | - | chr8.4:36817413-36817432 | MS.gene038526:CDS | 50.0% | |
| GCCCAATAACAACGAAGGAG+GGG | + | chr8.4:36816701-36816720 | None:intergenic | 50.0% | |
| GCTGATGCCATTGAGGATCA+TGG | - | chr8.4:36816750-36816769 | MS.gene038526:CDS | 50.0% | |
| GGCCCAATAACAACGAAGGA+GGG | + | chr8.4:36816702-36816721 | None:intergenic | 50.0% | |
| GTTGGAGTGAATGATCGGCA+CGG | + | chr8.4:36815899-36815918 | None:intergenic | 50.0% | |
| TAATGCCGCTGATGCCATTG+AGG | - | chr8.4:36816743-36816762 | MS.gene038526:CDS | 50.0% | |
| TCAATGGCATCAGCGGCATT+AGG | + | chr8.4:36816744-36816763 | None:intergenic | 50.0% | |
| TCTGACACCGGAATCTGCAA+TGG | + | chr8.4:36817017-36817036 | None:intergenic | 50.0% | |
| TGGCCCAATAACAACGAAGG+AGG | + | chr8.4:36816703-36816722 | None:intergenic | 50.0% | |
| TTGTACACCTCCACCAACGT+TGG | + | chr8.4:36815917-36815936 | None:intergenic | 50.0% | |
| TTTGGGCTTCTCTCCTTCCT+TGG | + | chr8.4:36817429-36817448 | None:intergenic | 50.0% | |
| ! | AGAGGCACAAAAAGCTGCCA+AGG | - | chr8.4:36817409-36817428 | MS.gene038526:CDS | 50.0% |
| ! | ATTCACTCCAACGTTGGTGG+AGG | - | chr8.4:36815907-36815926 | MS.gene038526:CDS | 50.0% |
| ! | CTTTTCCAAGATGCCATGGC+TGG | - | chr8.4:36816012-36816031 | MS.gene038526:CDS | 50.0% |
| ! | TTTTGCGGAAATGCCATGGC+TGG | - | chr8.4:36817208-36817227 | MS.gene038526:intron | 50.0% |
| ATGTGACGGTGTGGGATACC+TGG | + | chr8.4:36815516-36815535 | None:intergenic | 55.0% | |
| CACGAAAGAGGCTCGAGATC+TGG | - | chr8.4:36817331-36817350 | MS.gene038526:intron | 55.0% | |
| CGAGATCTGGTTGGGCTCTA+TGG | - | chr8.4:36817344-36817363 | MS.gene038526:intron | 55.0% | |
| CTCTCCCAAGGGTGACTTTG+AGG | - | chr8.4:36815943-36815962 | MS.gene038526:CDS | 55.0% | |
| GAAAGTGGGATAGCCAGCCA+TGG | + | chr8.4:36816028-36816047 | None:intergenic | 55.0% | |
| GAGCCTCTTTCGTGACAGTC+AGG | + | chr8.4:36817325-36817344 | None:intergenic | 55.0% | |
| GATAGCCAGCCATGGCATCT+TGG | + | chr8.4:36816020-36816039 | None:intergenic | 55.0% | |
| GGAAGAAACTCACGGCATGG+AGG | + | chr8.4:36817086-36817105 | None:intergenic | 55.0% | |
| TCCTCTACTTCTCAGCCCAC+TGG | - | chr8.4:36817057-36817076 | MS.gene038526:intron | 55.0% | |
| TCTTCGAAACACCGGCGATC+AGG | - | chr8.4:36815264-36815283 | MS.gene038526:CDS | 55.0% | |
| TGGCCTGACTGTCACGAAAG+AGG | - | chr8.4:36817319-36817338 | MS.gene038526:intron | 55.0% | |
| TTCGTGACAGTCAGGCCACT+TGG | + | chr8.4:36817317-36817336 | None:intergenic | 55.0% | |
| !! | ACCAGTGGGCTGAGAAGTAG+AGG | + | chr8.4:36817061-36817080 | None:intergenic | 55.0% |
| !! | AGTGGGCTGAGAAGTAGAGG+AGG | + | chr8.4:36817058-36817077 | None:intergenic | 55.0% |
| ACGGCATGGAGGACACCAGT+GGG | + | chr8.4:36817075-36817094 | None:intergenic | 60.0% | |
| CCATGGCTGGCACTTCCCTT+TGG | - | chr8.4:36817221-36817240 | MS.gene038526:intron | 60.0% | |
| CTTGTGGCGATCGGACCAAG+TGG | - | chr8.4:36817299-36817318 | MS.gene038526:intron | 60.0% | |
| GGTCCGATCGCCACAAGCTT+GGG | + | chr8.4:36817296-36817315 | None:intergenic | 60.0% | |
| GTCAGTGTCCGCGTCGTATC+CGG | - | chr8.4:36815589-36815608 | MS.gene038526:CDS | 60.0% | |
| TGGTCCGATCGCCACAAGCT+TGG | + | chr8.4:36817297-36817316 | None:intergenic | 60.0% | |
| !! | CCAAAGGGAAGTGCCAGCCA+TGG | + | chr8.4:36817224-36817243 | None:intergenic | 60.0% |
| CACGGCATGGAGGACACCAG+TGG | + | chr8.4:36817076-36817095 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 36815193 | 36817490 | 36815193 | ID=MS.gene038526 |
| chr8.4 | mRNA | 36815193 | 36817490 | 36815193 | ID=MS.gene038526.t1;Parent=MS.gene038526 |
| chr8.4 | exon | 36817398 | 36817490 | 36817398 | ID=MS.gene038526.t1.exon1;Parent=MS.gene038526.t1 |
| chr8.4 | CDS | 36817398 | 36817490 | 36817398 | ID=cds.MS.gene038526.t1;Parent=MS.gene038526.t1 |
| chr8.4 | exon | 36816371 | 36816850 | 36816371 | ID=MS.gene038526.t1.exon2;Parent=MS.gene038526.t1 |
| chr8.4 | CDS | 36816371 | 36816850 | 36816371 | ID=cds.MS.gene038526.t1;Parent=MS.gene038526.t1 |
| chr8.4 | exon | 36815772 | 36816251 | 36815772 | ID=MS.gene038526.t1.exon3;Parent=MS.gene038526.t1 |
| chr8.4 | CDS | 36815772 | 36816251 | 36815772 | ID=cds.MS.gene038526.t1;Parent=MS.gene038526.t1 |
| chr8.4 | exon | 36815193 | 36815660 | 36815193 | ID=MS.gene038526.t1.exon4;Parent=MS.gene038526.t1 |
| chr8.4 | CDS | 36815193 | 36815660 | 36815193 | ID=cds.MS.gene038526.t1;Parent=MS.gene038526.t1 |
| Gene Sequence |
| Protein sequence |
