AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026628


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026628.t1 MTR_1g030300 96.835 316 8 2 1 315 167 481 0.0 625
MS.gene026628.t1 MTR_5g012030 38.739 111 67 1 14 124 1 110 2.45e-18 85.9
MS.gene026628.t1 MTR_5g012030 30.973 113 77 1 13 125 390 501 8.96e-12 66.2
MS.gene026628.t1 MTR_3g452710 34.711 121 78 1 15 135 11 130 6.49e-18 84.3
MS.gene026628.t1 MTR_3g452710 34.711 121 78 1 15 135 11 130 6.80e-18 84.3
MS.gene026628.t1 MTR_5g063200 39.326 89 54 0 16 104 212 300 6.55e-15 75.9
MS.gene026628.t1 MTR_8g107280 38.889 126 73 2 3 125 467 591 8.87e-15 75.1
MS.gene026628.t1 MTR_3g074230 35.135 111 65 1 1 104 170 280 3.25e-13 70.5
MS.gene026628.t1 MTR_3g074230 35.135 111 65 1 1 104 170 280 3.37e-13 70.5
MS.gene026628.t1 MTR_3g087480 32.540 126 85 0 16 141 223 348 3.43e-13 70.5
MS.gene026628.t1 MTR_1g084100 37.615 109 64 3 15 122 91 196 2.81e-12 67.4
MS.gene026628.t1 MTR_2g078020 35.644 101 65 0 16 116 222 322 1.03e-11 65.9
MS.gene026628.t1 MTR_2g078020 35.644 101 65 0 16 116 222 322 1.30e-11 65.9
MS.gene026628.t1 MTR_4g094205 37.500 104 64 1 15 118 488 590 1.77e-11 65.1
MS.gene026628.t1 MTR_1g041435 30.657 137 93 2 17 153 13 147 2.83e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026628.t1 AT4G08320 56.627 249 95 7 1 241 161 404 1.32e-83 259
MS.gene026628.t1 AT4G08320 57.258 248 94 7 1 240 161 404 1.29e-79 248
MS.gene026628.t1 AT2G42810 39.496 119 71 1 15 133 13 130 3.34e-20 91.3
MS.gene026628.t1 AT2G42810 39.496 119 71 1 15 133 13 130 3.34e-20 91.3
MS.gene026628.t1 AT2G42810 39.496 119 71 1 15 133 13 130 3.34e-20 91.3
MS.gene026628.t1 AT2G42810 39.496 119 71 1 15 133 13 130 3.39e-20 91.3
MS.gene026628.t1 AT2G42810 39.496 119 71 1 15 133 13 130 3.45e-20 91.3
MS.gene026628.t1 AT4G12400 38.739 111 67 1 14 124 1 110 8.00e-19 87.4
MS.gene026628.t1 AT4G12400 38.739 111 67 1 14 124 1 110 8.79e-19 87.0
MS.gene026628.t1 AT1G12270 34.426 122 79 1 14 135 1 121 3.90e-15 76.3
MS.gene026628.t1 AT1G62740 32.432 111 74 1 14 124 1 110 2.06e-14 73.9
MS.gene026628.t1 AT1G62740 31.858 113 76 1 13 125 380 491 1.30e-12 68.6
MS.gene026628.t1 AT1G04190 31.884 138 92 2 16 153 16 151 5.09e-14 72.0
MS.gene026628.t1 AT5G09420 37.607 117 68 2 15 131 488 599 1.02e-13 72.0
MS.gene026628.t1 AT3G17970 37.931 116 71 1 3 118 462 576 1.18e-13 72.0
MS.gene026628.t1 AT2G42580 39.080 87 53 0 16 102 221 307 8.86e-12 66.2
MS.gene026628.t1 AT5G12430 40.698 86 47 1 18 99 882 967 3.64e-11 64.7

Find 77 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTATGCCTTACTGTAATT+TGG 0.182831 1.3:-16145826 None:intergenic
GCAAGATTGCTGGGGTTAAA+TGG 0.251602 1.3:-16147305 None:intergenic
AGTCTGTTAAAGAAAATATA+AGG 0.252895 1.3:+16146387 MS.gene026628:CDS
TACAGAGATGCTATTGATAA+AGG 0.286696 1.3:+16145883 MS.gene026628:CDS
GGCGGCTGCAAATGCGGGTC+AGG 0.290209 1.3:+16147340 MS.gene026628:CDS
GCTGTTCAATTTGAAGAATT+TGG 0.306867 1.3:+16144341 MS.gene026628:CDS
TTCTTGATCCCCTTGTATAA+TGG 0.330386 1.3:-16147250 None:intergenic
GGCTTCGTTATCTTCACTAT+TGG 0.331525 1.3:-16147567 None:intergenic
CATGCAGCTCCGGCTTCATT+TGG 0.338679 1.3:+16147275 MS.gene026628:CDS
ATGAACCGGAAATTCGATTT+GGG 0.344456 1.3:+16147411 MS.gene026628:CDS
TTCATTAGCTCCACTACTAT+TGG 0.357311 1.3:-16147393 None:intergenic
AATGAACCGGAAATTCGATT+TGG 0.360726 1.3:+16147410 MS.gene026628:CDS
GTTCCTGAGGAATTTGATCT+TGG 0.372280 1.3:-16147451 None:intergenic
TATCTTTGCAGCCTTGCAAT+TGG 0.381089 1.3:+16146352 MS.gene026628:intron
AATGATTAGATAGCTTAGTT+TGG 0.384520 1.3:-16147734 None:intergenic
AACGAAGCCGATATTCAATT+CGG 0.400107 1.3:+16147581 MS.gene026628:CDS
AATGTGATGGAGATGTTATC+AGG 0.401146 1.3:+16147662 MS.gene026628:CDS
CGATAGATCTGAGAGAATCT+TGG 0.412448 1.3:-16145795 None:intergenic
ATCAAGAAGCCATGCAGCTC+CGG 0.413860 1.3:+16147265 MS.gene026628:CDS
ACGAAGCCGATATTCAATTC+GGG 0.415294 1.3:+16147582 MS.gene026628:CDS
CAATCTTGCAAGCATGTTCA+TGG 0.420391 1.3:+16147319 MS.gene026628:CDS
ACAGAGATGCTATTGATAAA+GGG 0.425713 1.3:+16145884 MS.gene026628:CDS
GCGGCTGCAAATGCGGGTCA+GGG 0.428666 1.3:+16147341 MS.gene026628:CDS
GTTCATGGCGGCTGCAAATG+CGG 0.429486 1.3:+16147334 MS.gene026628:CDS
CAGTAAGGCATACAGTCGTC+TGG 0.431946 1.3:+16145834 MS.gene026628:CDS
GAACATGCTTGCAAGATTGC+TGG 0.438892 1.3:-16147315 None:intergenic
TTCTTTAACAGACTCATTGT+TGG 0.444055 1.3:-16146378 None:intergenic
GTGCTGTTTACTACTGCAAC+AGG 0.445785 1.3:+16144734 MS.gene026628:CDS
TCTTTAACAGACTCATTGTT+GGG 0.449540 1.3:-16146377 None:intergenic
GTCTGTTAAAGAAAATATAA+GGG 0.450970 1.3:+16146388 MS.gene026628:CDS
TTCATGGCGGCTGCAAATGC+GGG 0.459741 1.3:+16147335 MS.gene026628:CDS
TTATCAGGGAATGCACCTCC+TGG 0.482324 1.3:+16147677 MS.gene026628:CDS
CTTTCATTCGTTTGATCATG+TGG 0.485673 1.3:-16147704 None:intergenic
ATTTGATCATGCGGTTGCCC+AGG 0.488809 1.3:-16147524 None:intergenic
AATTGCATCAAAGTACTGCT+TGG 0.501271 1.3:-16144674 None:intergenic
TAGTAGTGGAGCTAATGAAC+CGG 0.501612 1.3:+16147397 MS.gene026628:CDS
CATATGCATCACGGATTGAA+AGG 0.505105 1.3:-16147483 None:intergenic
GGCATTGAGCCAAATGAAGC+CGG 0.511221 1.3:-16147284 None:intergenic
AACATGCTTGCAAGATTGCT+GGG 0.515017 1.3:-16147314 None:intergenic
ATCCCCTTGTATAATGGTGT+TGG 0.519179 1.3:-16147244 None:intergenic
CAACCGCATGATCAAATGAA+TGG 0.519572 1.3:+16147530 MS.gene026628:CDS
ACATCGTGCAGATCACAATC+AGG 0.521432 1.3:+16146522 MS.gene026628:CDS
CTTCCATTCATTTGATCATG+CGG 0.523198 1.3:-16147533 None:intergenic
CGGCTGCAAATGCGGGTCAG+GGG 0.529279 1.3:+16147342 MS.gene026628:CDS
CAAATTCCTCAGGAACTAAG+AGG 0.537501 1.3:+16147458 MS.gene026628:CDS
GTTTGATCATGTGGTTGCCC+AGG 0.546649 1.3:-16147695 None:intergenic
AAATTCTGATCAAATCCCTC+AGG 0.558105 1.3:+16147619 MS.gene026628:CDS
GGTAGCTGAGCATAAACTGA+TGG 0.558424 1.3:+16146492 MS.gene026628:intron
GATTGATCCAAATTACAGTA+AGG 0.561772 1.3:+16145819 MS.gene026628:CDS
AAACCAAGATCAAATTCCTC+AGG 0.562996 1.3:+16147448 MS.gene026628:CDS
CAAGAAGATGCCAATAGTAG+TGG 0.563887 1.3:+16147383 MS.gene026628:CDS
AATTCCAACACCATTATACA+AGG 0.568670 1.3:+16147240 MS.gene026628:CDS
TTTCAGGGAATGCACCTCCT+GGG 0.570365 1.3:+16147507 MS.gene026628:CDS
TGAACCGGAAATTCGATTTG+GGG 0.574309 1.3:+16147412 MS.gene026628:CDS
AGTAAGGCATACAGTCGTCT+GGG 0.585202 1.3:+16145835 MS.gene026628:CDS
CAAATGAAGCCGGAGCTGCA+TGG 0.592124 1.3:-16147274 None:intergenic
TATCAGGGAATGCACCTCCT+GGG 0.596121 1.3:+16147678 MS.gene026628:CDS
GGTTTAGCTTATTATGCACA+AGG 0.596547 1.3:+16145856 MS.gene026628:CDS
CAGGGGTCACATTCTCAAGA+AGG 0.598453 1.3:+16147359 MS.gene026628:CDS
ATGTGATGGAGATGTTATCA+GGG 0.598519 1.3:+16147663 MS.gene026628:CDS
CGAAGCCGATATTCAATTCG+GGG 0.601355 1.3:+16147583 MS.gene026628:CDS
TGATCATGCGGTTGCCCAGG+AGG 0.603190 1.3:-16147521 None:intergenic
TGGTGTCTTTCAAAATGTGA+TGG 0.607325 1.3:+16147649 MS.gene026628:CDS
CAAATCCCTCAGGAACTAAG+TGG 0.608012 1.3:+16147629 MS.gene026628:CDS
CCCTGAAAACATATGCATCA+CGG 0.617541 1.3:-16147492 None:intergenic
ATTGTTGGGATCCAATTGCA+AGG 0.618606 1.3:-16146363 None:intergenic
TTCCAACACCATTATACAAG+GGG 0.621877 1.3:+16147242 MS.gene026628:CDS
AAGGCACCTCTTAGTTCCTG+AGG 0.622185 1.3:-16147464 None:intergenic
GAACCGGAAATTCGATTTGG+GGG 0.635777 1.3:+16147413 MS.gene026628:CDS
AGACACCACTTAGTTCCTGA+GGG 0.637831 1.3:-16147634 None:intergenic
TGATCATGTGGTTGCCCAGG+AGG 0.644291 1.3:-16147692 None:intergenic
AAGACACCACTTAGTTCCTG+AGG 0.647601 1.3:-16147635 None:intergenic
TCAAATTAACAGATATACAG+AGG 0.654051 1.3:+16145768 MS.gene026628:CDS
ATTCCAACACCATTATACAA+GGG 0.670083 1.3:+16147241 MS.gene026628:CDS
TCTTGCAAGCATGTTCATGG+CGG 0.708564 1.3:+16147322 MS.gene026628:CDS
GAAGCCGATATTCAATTCGG+GGG 0.723079 1.3:+16147584 MS.gene026628:CDS
ACATGCTTGCAAGATTGCTG+GGG 0.724105 1.3:-16147313 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAAAAAAAAAAAG+AGG + chr1.3:16145523-16145542 MS.gene026628:intron 10.0%
!!! TTTAAATATTTAGTACATTT+TGG + chr1.3:16145651-16145670 MS.gene026628:intron 10.0%
!!! TTTTCTTTTTTTGTATTTTT+AGG - chr1.3:16145513-16145532 None:intergenic 10.0%
!! TTTACATTGAATTAACAATA+AGG - chr1.3:16146051-16146070 None:intergenic 15.0%
!!! AAAAAAAAAAAAAGAGGTAT+AGG + chr1.3:16145529-16145548 MS.gene026628:intron 15.0%
!!! AAAAAAAAAAAAGAGGTATA+GGG + chr1.3:16145530-16145549 MS.gene026628:intron 15.0%
!!! CATATCTTTTAAATTTAATG+AGG + chr1.3:16146557-16146576 MS.gene026628:intron 15.0%
!!! GGTTAAATTGATTTTAATTT+TGG + chr1.3:16144550-16144569 MS.gene026628:intron 15.0%
!!! TAATTTTGTGAAAAAATTGT+TGG + chr1.3:16146868-16146887 MS.gene026628:intron 15.0%
!! AGTCTGTTAAAGAAAATATA+AGG + chr1.3:16146387-16146406 MS.gene026628:CDS 20.0%
!! ATAGTGTAATAAATCACTAA+TGG - chr1.3:16146246-16146265 None:intergenic 20.0%
!! ATTGATAAAGGGTTTAAAAA+AGG + chr1.3:16145895-16145914 MS.gene026628:CDS 20.0%
!! CAAATAATATAACTACACTA+TGG + chr1.3:16145170-16145189 MS.gene026628:intron 20.0%
!! GTCTGTTAAAGAAAATATAA+GGG + chr1.3:16146388-16146407 MS.gene026628:CDS 20.0%
!!! AATTATTTGGTGAACATATT+TGG - chr1.3:16145061-16145080 None:intergenic 20.0%
!!! ATTTGTTTCTCACAATTATT+TGG - chr1.3:16145074-16145093 None:intergenic 20.0%
!!! TTTGTATTTTTAGGAGAAAT+TGG - chr1.3:16145504-16145523 None:intergenic 20.0%
! AAATTGAAGTCAAAATTCTC+AGG - chr1.3:16145989-16146008 None:intergenic 25.0%
! AAATTGTTGGAAAGCAATTA+TGG + chr1.3:16146881-16146900 MS.gene026628:intron 25.0%
! AAGGTCAAATCTATCATTAT+AGG - chr1.3:16145316-16145335 None:intergenic 25.0%
! ACAAAAGCAAATTGAAACAA+TGG - chr1.3:16147170-16147189 None:intergenic 25.0%
! AGAGACATTTATTAGACAAT+TGG - chr1.3:16144852-16144871 None:intergenic 25.0%
! AGGTCAAATCTATCATTATA+GGG - chr1.3:16145315-16145334 None:intergenic 25.0%
! ATAAAGGGTTTAAAAAAGGT+CGG + chr1.3:16145899-16145918 MS.gene026628:intron 25.0%
! ATCATACCAGTCTTAATTAA+TGG + chr1.3:16146815-16146834 MS.gene026628:intron 25.0%
! ATGAGAAACACATATATACA+CGG - chr1.3:16145578-16145597 None:intergenic 25.0%
! TAATTGTGAGAAACAAATTC+TGG + chr1.3:16145076-16145095 MS.gene026628:intron 25.0%
! TATTACATCACATCTGATAA+AGG - chr1.3:16146911-16146930 None:intergenic 25.0%
! TCAAATTAACAGATATACAG+AGG + chr1.3:16145768-16145787 MS.gene026628:CDS 25.0%
! TCATACCAGTCTTAATTAAT+GGG + chr1.3:16146816-16146835 MS.gene026628:intron 25.0%
! TTCTAAATAACTGCGATTTA+TGG + chr1.3:16145103-16145122 MS.gene026628:intron 25.0%
!! GCATTTTCTGATAAATATCA+GGG + chr1.3:16145732-16145751 MS.gene026628:intron 25.0%
!! TGCATTTTCTGATAAATATC+AGG + chr1.3:16145731-16145750 MS.gene026628:intron 25.0%
!! TTGAAATTGAGTTTTTACTC+AGG + chr1.3:16144634-16144653 MS.gene026628:intron 25.0%
!!! AATTTTAGGATTTTTTGGGA+TGG + chr1.3:16145003-16145022 MS.gene026628:intron 25.0%
!!! AGGGTAATTTTAGGATTTTT+TGG + chr1.3:16144998-16145017 MS.gene026628:intron 25.0%
!!! ATATTTAGTACATTTTGGAG+TGG + chr1.3:16145656-16145675 MS.gene026628:intron 25.0%
!!! ATTTTGACTTCAATTTCATC+TGG + chr1.3:16145993-16146012 MS.gene026628:intron 25.0%
!!! CTCTTTTTACTTTTTCTATG+TGG + chr1.3:16146446-16146465 MS.gene026628:intron 25.0%
!!! GGGTAATTTTAGGATTTTTT+GGG + chr1.3:16144999-16145018 MS.gene026628:intron 25.0%
AAACATGCACTTGTAATTGT+AGG - chr1.3:16146126-16146145 None:intergenic 30.0%
AAACGAACAATAATGCATAG+AGG - chr1.3:16147039-16147058 None:intergenic 30.0%
AAAGATACGGAATCATGTTA+GGG - chr1.3:16146339-16146358 None:intergenic 30.0%
AACAATAATGCATAGAGGAA+TGG - chr1.3:16147034-16147053 None:intergenic 30.0%
AACTAAGTGACTTTGATCTT+GGG - chr1.3:16145210-16145229 None:intergenic 30.0%
AATTCCAACACCATTATACA+AGG + chr1.3:16147240-16147259 MS.gene026628:CDS 30.0%
ACAGAGATGCTATTGATAAA+GGG + chr1.3:16145884-16145903 MS.gene026628:CDS 30.0%
AGTGAAATTGAAGAGATTGT+TGG - chr1.3:16145286-16145305 None:intergenic 30.0%
ATAATGCTCTTGTTAATCAC+AGG + chr1.3:16146471-16146490 MS.gene026628:intron 30.0%
ATGTGATGTAATACATGATC+TGG + chr1.3:16146918-16146937 MS.gene026628:intron 30.0%
ATTCCAACACCATTATACAA+GGG + chr1.3:16147241-16147260 MS.gene026628:CDS 30.0%
CAAATCTATCATTATAGGGA+AGG - chr1.3:16145311-16145330 None:intergenic 30.0%
GAAAACCCATTAATTAAGAC+TGG - chr1.3:16146824-16146843 None:intergenic 30.0%
GAAACATAAAAATGCGCATT+AGG + chr1.3:16145384-16145403 MS.gene026628:intron 30.0%
GATTGATCCAAATTACAGTA+AGG + chr1.3:16145819-16145838 MS.gene026628:CDS 30.0%
GCTGAATCACTAAAAACATT+AGG + chr1.3:16144363-16144382 MS.gene026628:CDS 30.0%
GCTGTTCAATTTGAAGAATT+TGG + chr1.3:16144341-16144360 MS.gene026628:CDS 30.0%
TACAGAGATGCTATTGATAA+AGG + chr1.3:16145883-16145902 MS.gene026628:CDS 30.0%
TAGAAACCAACATGTAGTAT+TGG + chr1.3:16147104-16147123 MS.gene026628:intron 30.0%
TCAGGAATACATATCATACT+AGG + chr1.3:16146598-16146617 MS.gene026628:intron 30.0%
TCCAAGAAAATGAATTGCTA+AGG - chr1.3:16145347-16145366 None:intergenic 30.0%
TCTTTAACAGACTCATTGTT+GGG - chr1.3:16146380-16146399 None:intergenic 30.0%
TGAGAAACACATATATACAC+GGG - chr1.3:16145577-16145596 None:intergenic 30.0%
TGAGAAACAGTATAATCAAG+TGG - chr1.3:16144764-16144783 None:intergenic 30.0%
TGTTACAAATCAAGGTGAAA+TGG + chr1.3:16146016-16146035 MS.gene026628:intron 30.0%
TTCTTTAACAGACTCATTGT+TGG - chr1.3:16146381-16146400 None:intergenic 30.0%
! ACCTTAGCAATTCATTTTCT+TGG + chr1.3:16145343-16145362 MS.gene026628:intron 30.0%
! AGAGATTTTCGATTCATGAA+GGG - chr1.3:16144426-16144445 None:intergenic 30.0%
! AGTTAAATAAACTGGTGCTA+AGG - chr1.3:16145703-16145722 None:intergenic 30.0%
! TCATTCTTCAGGGTAATTTT+AGG + chr1.3:16144989-16145008 MS.gene026628:intron 30.0%
!! AATGCAGTGTAACTTGTTAT+CGG + chr1.3:16147127-16147146 MS.gene026628:intron 30.0%
!!! TCAAATGTATCCCTTTTTTC+TGG + chr1.3:16145601-16145620 MS.gene026628:intron 30.0%
AAACCAAGATCAAATTCCTC+AGG + chr1.3:16147448-16147467 MS.gene026628:CDS 35.0%
AAATTCTGATCAAATCCCTC+AGG + chr1.3:16147619-16147638 MS.gene026628:CDS 35.0%
AACGAAGCCGATATTCAATT+CGG + chr1.3:16147581-16147600 MS.gene026628:CDS 35.0%
AATGAACCGGAAATTCGATT+TGG + chr1.3:16147410-16147429 MS.gene026628:CDS 35.0%
AATTGCTAAGGTTGACAAGA+AGG - chr1.3:16145335-16145354 None:intergenic 35.0%
ACATAAAAATGCGCATTAGG+AGG + chr1.3:16145387-16145406 MS.gene026628:intron 35.0%
ACATATCATACTAGGAACCT+GGG + chr1.3:16146606-16146625 MS.gene026628:intron 35.0%
ACCGTCTGATCTCAAATTAA+AGG - chr1.3:16146681-16146700 None:intergenic 35.0%
ACTAAGTGACTTTGATCTTG+GGG - chr1.3:16145209-16145228 None:intergenic 35.0%
AGATGCTATGTCATTCTTCA+GGG + chr1.3:16144979-16144998 MS.gene026628:intron 35.0%
ATGAACCGGAAATTCGATTT+GGG + chr1.3:16147411-16147430 MS.gene026628:CDS 35.0%
CAAAGATACGGAATCATGTT+AGG - chr1.3:16146340-16146359 None:intergenic 35.0%
CATAAAAATGCGCATTAGGA+GGG + chr1.3:16145388-16145407 MS.gene026628:intron 35.0%
CATAGCATCTCACAAAAAAG+TGG - chr1.3:16144969-16144988 None:intergenic 35.0%
CTGTATGCCTTACTGTAATT+TGG - chr1.3:16145829-16145848 None:intergenic 35.0%
CTTCCATTCATTTGATCATG+CGG - chr1.3:16147536-16147555 None:intergenic 35.0%
CTTTCATTCGTTTGATCATG+TGG - chr1.3:16147707-16147726 None:intergenic 35.0%
GAACTAAGTGACTTTGATCT+TGG - chr1.3:16145211-16145230 None:intergenic 35.0%
GAGAAACACATATATACACG+GGG - chr1.3:16145576-16145595 None:intergenic 35.0%
GCACCAGTTTATTTAACTGA+TGG + chr1.3:16145705-16145724 MS.gene026628:intron 35.0%
GCTCCATCAGTTAAATAAAC+TGG - chr1.3:16145711-16145730 None:intergenic 35.0%
TAAGACTGGTATGATCAAAG+TGG - chr1.3:16146810-16146829 None:intergenic 35.0%
TACATATCATACTAGGAACC+TGG + chr1.3:16146605-16146624 MS.gene026628:intron 35.0%
TATTATACATGCTGTGTGTC+AGG + chr1.3:16146580-16146599 MS.gene026628:intron 35.0%
TCTATATTTGCACTGCTGAT+TGG + chr1.3:16144524-16144543 MS.gene026628:intron 35.0%
TCTTGATTGGCGATTTAACT+TGG + chr1.3:16145444-16145463 MS.gene026628:intron 35.0%
TGCATTCCAATACTACATGT+TGG - chr1.3:16147113-16147132 None:intergenic 35.0%
TGGTGTCTTTCAAAATGTGA+TGG + chr1.3:16147649-16147668 MS.gene026628:CDS 35.0%
TGTGAGAAACAAATTCTGGA+AGG + chr1.3:16145080-16145099 MS.gene026628:intron 35.0%
TTCATTAGCTCCACTACTAT+TGG - chr1.3:16147396-16147415 None:intergenic 35.0%
TTCCAACACCATTATACAAG+GGG + chr1.3:16147242-16147261 MS.gene026628:CDS 35.0%
TTCTTGATCCCCTTGTATAA+TGG - chr1.3:16147253-16147272 None:intergenic 35.0%
TTGAAGTCAAAATTCTCAGG+AGG - chr1.3:16145986-16146005 None:intergenic 35.0%
! AATGTGATGGAGATGTTATC+AGG + chr1.3:16147662-16147681 MS.gene026628:CDS 35.0%
! ATGTGATGGAGATGTTATCA+GGG + chr1.3:16147663-16147682 MS.gene026628:CDS 35.0%
! CTTGATTGGCGATTTAACTT+GGG + chr1.3:16145445-16145464 MS.gene026628:intron 35.0%
! GAGAGATTTTCGATTCATGA+AGG - chr1.3:16144427-16144446 None:intergenic 35.0%
! GAGTTTTTACTCAGGTAACA+AGG + chr1.3:16144642-16144661 MS.gene026628:intron 35.0%
! GGTTTAGCTTATTATGCACA+AGG + chr1.3:16145856-16145875 MS.gene026628:CDS 35.0%
! TATAAGGGTTTGTTCTGTTC+TGG + chr1.3:16146403-16146422 MS.gene026628:intron 35.0%
! TTTTACACTGTAGCTGATCT+TGG + chr1.3:16146655-16146674 MS.gene026628:intron 35.0%
!! AATACATGATCTGGTTCTTG+TGG + chr1.3:16146927-16146946 MS.gene026628:intron 35.0%
!! AATTGCATCAAAGTACTGCT+TGG - chr1.3:16144677-16144696 None:intergenic 35.0%
!! CTCAAGAGTATCTTCATTGA+TGG + chr1.3:16144588-16144607 MS.gene026628:intron 35.0%
!! GCCTTTAATTTGAGATCAGA+CGG + chr1.3:16146677-16146696 MS.gene026628:intron 35.0%
!! TCATCTGGTGTTACAAATCA+AGG + chr1.3:16146008-16146027 MS.gene026628:intron 35.0%
!!! AATGTATCCCTTTTTTCTGG+TGG + chr1.3:16145604-16145623 MS.gene026628:intron 35.0%
AACATGCTTGCAAGATTGCT+GGG - chr1.3:16147317-16147336 None:intergenic 40.0%
AAGTCAAAATTCTCAGGAGG+AGG - chr1.3:16145983-16146002 None:intergenic 40.0%
ACGAAGCCGATATTCAATTC+GGG + chr1.3:16147582-16147601 MS.gene026628:CDS 40.0%
ATCCCCTTGTATAATGGTGT+TGG - chr1.3:16147247-16147266 None:intergenic 40.0%
ATTGCAAGGCTGCAAAGATA+CGG - chr1.3:16146352-16146371 None:intergenic 40.0%
ATTGCCCCCGAATTGAATAT+CGG - chr1.3:16147591-16147610 None:intergenic 40.0%
ATTGTTGGGATCCAATTGCA+AGG - chr1.3:16146366-16146385 None:intergenic 40.0%
ATTTCCATATTCCAACCAGC+CGG - chr1.3:16146284-16146303 None:intergenic 40.0%
CAAATTCCTCAGGAACTAAG+AGG + chr1.3:16147458-16147477 MS.gene026628:CDS 40.0%
CAACCGCATGATCAAATGAA+TGG + chr1.3:16147530-16147549 MS.gene026628:CDS 40.0%
CAAGAAGATGCCAATAGTAG+TGG + chr1.3:16147383-16147402 MS.gene026628:CDS 40.0%
CAATCTTGCAAGCATGTTCA+TGG + chr1.3:16147319-16147338 MS.gene026628:CDS 40.0%
CCCTGAAAACATATGCATCA+CGG - chr1.3:16147495-16147514 None:intergenic 40.0%
CGATAGATCTGAGAGAATCT+TGG - chr1.3:16145798-16145817 None:intergenic 40.0%
CTATTATGAGTATCCGATCC+CGG + chr1.3:16146262-16146281 MS.gene026628:intron 40.0%
GAGATGCTATGTCATTCTTC+AGG + chr1.3:16144978-16144997 MS.gene026628:intron 40.0%
GAGTGTGTGTGTCAAAAATG+CGG + chr1.3:16145410-16145429 MS.gene026628:intron 40.0%
GGCTTCGTTATCTTCACTAT+TGG - chr1.3:16147570-16147589 None:intergenic 40.0%
GTTCCTGAGGAATTTGATCT+TGG - chr1.3:16147454-16147473 None:intergenic 40.0%
TATCTTTGCAGCCTTGCAAT+TGG + chr1.3:16146352-16146371 MS.gene026628:intron 40.0%
TATGACTCATGTGAACTGTG+CGG - chr1.3:16146990-16147009 None:intergenic 40.0%
TGTCCACATTGTAAGAGAGA+GGG - chr1.3:16144455-16144474 None:intergenic 40.0%
TGTGTGTGTGTAGTTTCTTG+TGG + chr1.3:16144816-16144835 MS.gene026628:intron 40.0%
! AAAAGAGGTATAGGGAGTGA+TGG + chr1.3:16145538-16145557 MS.gene026628:intron 40.0%
! ATTTGCACTGCTGATTGGTT+TGG + chr1.3:16144529-16144548 MS.gene026628:intron 40.0%
! CATATGCATCACGGATTGAA+AGG - chr1.3:16147486-16147505 None:intergenic 40.0%
! CCGTGATGCATATGTTTTCA+GGG + chr1.3:16147492-16147511 MS.gene026628:CDS 40.0%
! TAGTAGTGGAGCTAATGAAC+CGG + chr1.3:16147397-16147416 MS.gene026628:CDS 40.0%
! TCCGTGATGCATATGTTTTC+AGG + chr1.3:16147491-16147510 MS.gene026628:CDS 40.0%
! TCTTTTTCTCCATCCTCTGA+TGG + chr1.3:16145232-16145251 MS.gene026628:intron 40.0%
! TGAACCGGAAATTCGATTTG+GGG + chr1.3:16147412-16147431 MS.gene026628:CDS 40.0%
!! GGTATTTTGAGCCAGACAAT+TGG - chr1.3:16145682-16145701 None:intergenic 40.0%
AAGACACCACTTAGTTCCTG+AGG - chr1.3:16147638-16147657 None:intergenic 45.0%
ACATCGTGCAGATCACAATC+AGG + chr1.3:16146522-16146541 MS.gene026628:CDS 45.0%
ACATGCTTGCAAGATTGCTG+GGG - chr1.3:16147316-16147335 None:intergenic 45.0%
AGACACCACTTAGTTCCTGA+GGG - chr1.3:16147637-16147656 None:intergenic 45.0%
AGAGATTGTTGGAGATGCAG+AGG - chr1.3:16145275-16145294 None:intergenic 45.0%
AGCAGAGCCACCAGAAAAAA+GGG - chr1.3:16145614-16145633 None:intergenic 45.0%
AGTAAGGCATACAGTCGTCT+GGG + chr1.3:16145835-16145854 MS.gene026628:CDS 45.0%
CAAATCCCTCAGGAACTAAG+TGG + chr1.3:16147629-16147648 MS.gene026628:CDS 45.0%
CGAAGCCGATATTCAATTCG+GGG + chr1.3:16147583-16147602 MS.gene026628:CDS 45.0%
GAACATGCTTGCAAGATTGC+TGG - chr1.3:16147318-16147337 None:intergenic 45.0%
GAAGCCGATATTCAATTCGG+GGG + chr1.3:16147584-16147603 MS.gene026628:CDS 45.0%
GATAGAGCATAGACCATCAG+AGG - chr1.3:16145248-16145267 None:intergenic 45.0%
GCAAGATTGCTGGGGTTAAA+TGG - chr1.3:16147308-16147327 None:intergenic 45.0%
GGTAGCTGAGCATAAACTGA+TGG + chr1.3:16146492-16146511 MS.gene026628:intron 45.0%
GGTGTTCGAATGCTCTTGAT+TGG + chr1.3:16145431-16145450 MS.gene026628:intron 45.0%
GTGTCCACATTGTAAGAGAG+AGG - chr1.3:16144456-16144475 None:intergenic 45.0%
TCTCCCTCTCTCTTACAATG+TGG + chr1.3:16144449-16144468 MS.gene026628:intron 45.0%
TCTTGCAAGCATGTTCATGG+CGG + chr1.3:16147322-16147341 MS.gene026628:CDS 45.0%
TTGCCCCCAAATCGAATTTC+CGG - chr1.3:16147419-16147438 None:intergenic 45.0%
TTTCCATATTCCAACCAGCC+GGG - chr1.3:16146283-16146302 None:intergenic 45.0%
!! GAACCGGAAATTCGATTTGG+GGG + chr1.3:16147413-16147432 MS.gene026628:CDS 45.0%
!! GTGCTGTTTACTACTGCAAC+AGG + chr1.3:16144734-16144753 MS.gene026628:CDS 45.0%
!!! TTTTGGAGTGGCCAATTGTC+TGG + chr1.3:16145668-16145687 MS.gene026628:intron 45.0%
ATATTCCAACCAGCCGGGAT+CGG - chr1.3:16146278-16146297 None:intergenic 50.0%
ATCAAGAAGCCATGCAGCTC+CGG + chr1.3:16147265-16147284 MS.gene026628:CDS 50.0%
ATTTGATCATGCGGTTGCCC+AGG - chr1.3:16147527-16147546 None:intergenic 50.0%
CAGGAGGCTGTAACAGATCT+GGG - chr1.3:16146766-16146785 None:intergenic 50.0%
CAGGGGTCACATTCTCAAGA+AGG + chr1.3:16147359-16147378 MS.gene026628:CDS 50.0%
CAGTAAGGCATACAGTCGTC+TGG + chr1.3:16145834-16145853 MS.gene026628:CDS 50.0%
GAGCAGAGCCACCAGAAAAA+AGG - chr1.3:16145615-16145634 None:intergenic 50.0%
GAGCATAGACCATCAGAGGA+TGG - chr1.3:16145244-16145263 None:intergenic 50.0%
GTTTGATCATGTGGTTGCCC+AGG - chr1.3:16147698-16147717 None:intergenic 50.0%
TATCAGGGAATGCACCTCCT+GGG + chr1.3:16147678-16147697 MS.gene026628:CDS 50.0%
TTATCAGGGAATGCACCTCC+TGG + chr1.3:16147677-16147696 MS.gene026628:CDS 50.0%
TTCCTGCTGCAACTAACAGC+AGG - chr1.3:16146785-16146804 None:intergenic 50.0%
TTTCAGGGAATGCACCTCCT+GGG + chr1.3:16147507-16147526 MS.gene026628:CDS 50.0%
! AAGGCACCTCTTAGTTCCTG+AGG - chr1.3:16147467-16147486 None:intergenic 50.0%
! GGCATTGAGCCAAATGAAGC+CGG - chr1.3:16147287-16147306 None:intergenic 50.0%
!! CTCAGCCGCTGATTTGAGAT+CGG + chr1.3:16146736-16146755 MS.gene026628:intron 50.0%
!! TTTTCAGGGAATGCACCTCC+TGG + chr1.3:16147506-16147525 MS.gene026628:CDS 50.0%
!! TTTTCTGGTGGCTCTGCTCT+GGG + chr1.3:16145616-16145635 MS.gene026628:intron 50.0%
!! TTTTTCTGGTGGCTCTGCTC+TGG + chr1.3:16145615-16145634 MS.gene026628:intron 50.0%
CAAATGAAGCCGGAGCTGCA+TGG - chr1.3:16147277-16147296 None:intergenic 55.0%
CATGCAGCTCCGGCTTCATT+TGG + chr1.3:16147275-16147294 MS.gene026628:CDS 55.0%
CTCCTGCTGTTAGTTGCAGC+AGG + chr1.3:16146780-16146799 MS.gene026628:intron 55.0%
CTGCTGCAACTAACAGCAGG+AGG - chr1.3:16146782-16146801 None:intergenic 55.0%
GCAGGAGGCTGTAACAGATC+TGG - chr1.3:16146767-16146786 None:intergenic 55.0%
GCCGTCCGATCTCAAATCAG+CGG - chr1.3:16146744-16146763 None:intergenic 55.0%
GTTCATGGCGGCTGCAAATG+CGG + chr1.3:16147334-16147353 MS.gene026628:CDS 55.0%
TATGAGTATCCGATCCCGGC+TGG + chr1.3:16146266-16146285 MS.gene026628:intron 55.0%
TGATCATGTGGTTGCCCAGG+AGG - chr1.3:16147695-16147714 None:intergenic 55.0%
TTCATGGCGGCTGCAAATGC+GGG + chr1.3:16147335-16147354 MS.gene026628:CDS 55.0%
! GATCCCGGCTGGTTGGAATA+TGG + chr1.3:16146277-16146296 MS.gene026628:intron 55.0%
!! GCCGCTGATTTGAGATCGGA+CGG + chr1.3:16146740-16146759 MS.gene026628:intron 55.0%
AACGCTACAACAGCGAGCCC+AGG - chr1.3:16146626-16146645 None:intergenic 60.0%
AGTATCCGATCCCGGCTGGT+TGG + chr1.3:16146270-16146289 MS.gene026628:intron 60.0%
TGATCATGCGGTTGCCCAGG+AGG - chr1.3:16147524-16147543 None:intergenic 60.0%
CGGCTGCAAATGCGGGTCAG+GGG + chr1.3:16147342-16147361 MS.gene026628:CDS 65.0%
GCGGCTGCAAATGCGGGTCA+GGG + chr1.3:16147341-16147360 MS.gene026628:CDS 65.0%
GGCGGCTGCAAATGCGGGTC+AGG + chr1.3:16147340-16147359 MS.gene026628:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 16144321 16147742 16144321 ID=MS.gene026628
chr1.3 mRNA 16144321 16147742 16144321 ID=MS.gene026628.t1;Parent=MS.gene026628
chr1.3 exon 16144321 16144384 16144321 ID=MS.gene026628.t1.exon1;Parent=MS.gene026628.t1
chr1.3 CDS 16144321 16144384 16144321 ID=cds.MS.gene026628.t1;Parent=MS.gene026628.t1
chr1.3 exon 16144656 16144755 16144656 ID=MS.gene026628.t1.exon2;Parent=MS.gene026628.t1
chr1.3 CDS 16144656 16144755 16144656 ID=cds.MS.gene026628.t1;Parent=MS.gene026628.t1
chr1.3 exon 16145753 16145916 16145753 ID=MS.gene026628.t1.exon3;Parent=MS.gene026628.t1
chr1.3 CDS 16145753 16145916 16145753 ID=cds.MS.gene026628.t1;Parent=MS.gene026628.t1
chr1.3 exon 16146363 16146409 16146363 ID=MS.gene026628.t1.exon4;Parent=MS.gene026628.t1
chr1.3 CDS 16146363 16146409 16146363 ID=cds.MS.gene026628.t1;Parent=MS.gene026628.t1
chr1.3 exon 16146493 16146543 16146493 ID=MS.gene026628.t1.exon5;Parent=MS.gene026628.t1
chr1.3 CDS 16146493 16146543 16146493 ID=cds.MS.gene026628.t1;Parent=MS.gene026628.t1
chr1.3 exon 16147221 16147742 16147221 ID=MS.gene026628.t1.exon6;Parent=MS.gene026628.t1
chr1.3 CDS 16147221 16147742 16147221 ID=cds.MS.gene026628.t1;Parent=MS.gene026628.t1
Gene Sequence

>MS.gene026628

ATGGAAAAATCTGGGCGTGGGCTGTTCAATTTGAAGAATTTGGCTGAATCACTAAAAACATTAGGTATGATAAGTTACTTTGACTTTAAGAAGCTTTCTTTTCCCTTCATGAATCGAAAATCTCTCTTTCTCCCTCTCTCTTACAATGTGGACACAACACATAATAGATCTTTTATTGTTAAGAATTGAAGTATGTCAAAATGTCTATATTTGCACTGCTGATTGGTTTGGTTAAATTGATTTTAATTTTGGTCAATTTAAGTTTTGCTCAAGAGTATCTTCATTGATGGATTTTCGCTAGACAATTTAATACTTGAAATTGAGTTTTTACTCAGGTAACAAGGCAATGCAATCCAAGCAGTACTTTGATGCAATTGAGTTGTATAATTGTGCAATTGCGATATATGAAAAGAGTGCTGTTTACTACTGCAACAGGTATTCCACTTGATTATACTGTTTCTCAATTATATATCACTATACTATTTTTAGTACATCTGTGTGTGTGTAGTTTCTTGTGGAATGTAATTACCAATTGTCTAATAAATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTAAATATTAAATACATATAACTAATATCAAATATTAGTTGTGTTGCTTCCACTTTTTTGTGAGATGCTATGTCATTCTTCAGGGTAATTTTAGGATTTTTTGGGATGGAGAATTTTATCAAGTATTCTAGTTATGCTGCACCAAATATGTTCACCAAATAATTGTGAGAAACAAATTCTGGAAGGTTCTAAATAACTGCGATTTATGGAGAATAGAGAAGAACTAAGCAATACAAAGTTCGAGCTCAAAAAACAAATAATATAACTACACTATGGTCTCATTCATCATCCCCAAGATCAAAGTCACTTAGTTCATCTTTTTCTCCATCCTCTGATGGTCTATGCTCTATCTTTACCTCTGCATCTCCAACAATCTCTTCAATTTCACTCTCCTTCCCTATAATGATAGATTTGACCTTCTTGTCAACCTTAGCAATTCATTTTCTTGGACTTATCTTATTAAACAAGAAACATAAAAATGCGCATTAGGAGGGAGTGTGTGTGTCAAAAATGCGGTGTTCGAATGCTCTTGATTGGCGATTTAACTTGGGATATTTAGAATATTTGTTTTATGATGATTCTGTCCAATTTCTCCTAAAAATACAAAAAAAGAAAAAAAAAAAAAGAGGTATAGGGAGTGATGGTAGTTCACATGACCCCGTGTATATATGTGTTTCTCATGTTTCAAATGTATCCCTTTTTTCTGGTGGCTCTGCTCTGGGCGTATGAATATATTTAAATATTTAGTACATTTTGGAGTGGCCAATTGTCTGGCTCAAAATACCTTAGCACCAGTTTATTTAACTGATGGAGCTGCATTTTCTGATAAATATCAGGGCAGCTGCTTATACTCAAATTAACAGATATACAGAGGCAATCCAAGATTCTCTCAGATCTATCGAGATTGATCCAAATTACAGTAAGGCATACAGTCGTCTGGGTTTAGCTTATTATGCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAAAGGTCGGTGAAGTATCATATTAATTGATTTCTTGTTTTTATAATCTGCTTGACATACTTACTGAGCCTCCTCCTGAGAATTTTGACTTCAATTTCATCTGGTGTTACAAATCAAGGTGAAATGGTGCACACAACCTTATTGTTAATTCAATGTAAATAAAAATTAGATTTGCTCAAAATTCATCAGCTTCTATTTGTTATTTGAGTTTCCTACAATTACAAGTGCATGTTTTAAATGTCAGAGTCGAAAGAAATATTAAAGAATTGATTTCACTAAAAATTCATTCTGTATTAATCAACATCATAATCAGAGTGTGAAGTATTTCAAACCATTAGTGATTTATTACACTATTATGAGTATCCGATCCCGGCTGGTTGGAATATGGAAATGTTAAATCTGAAAGAACTCTTAAGTTATTTCACCCTAACATGATTCCGTATCTTTGCAGCCTTGCAATTGGATCCCAACAATGAGTCTGTTAAAGAAAATATAAGGGTTTGTTCTGTTCTGGTTTTTATTTTATTTTCTCTTCTCTTTTTACTTTTTCTATGTGGTCATAATGCTCTTGTTAATCACAGGTAGCTGAGCATAAACTGATGGAAGAGCGACATCGTGCAGATCACAATCAGGTATTATTATTATCATATCTTTTAAATTTAATGAGGTATTATACATGCTGTGTGTCAGGAATACATATCATACTAGGAACCTGGGCTCGCTGTTGTAGCGTTTTCACGTAGTTTTACACTGTAGCTGATCTTGGCCTTTAATTTGAGATCAGACGGTTTATATTTGAAACTTTTTTCAAGTAGTAAAATCATCTCAGCCGCTGATTTGAGATCGGACGGCCCAGATCTGTTACAGCCTCCTGCTGTTAGTTGCAGCAGGAAATCCACTTTGATCATACCAGTCTTAATTAATGGGTTTTCTCTTTTTTTTTTTTGCAAAATAACTAATTTTGTGAAAAAATTGTTGGAAAGCAATTATGGATAACCTTTATCAGATGTGATGTAATACATGATCTGGTTCTTGTGGTTATTGTTGTCTTCAACAGCTTATCTTTCATTTCAATCCGCACAGTTCACATGAGTCATACAAATTTTTTCACTTAGTTAGCCATTCCTCTATGCATTATTGTTCGTTTTCAAATTAAATCTACGAATTTACTCTAGCTATTTACTTTTCATATTAGAAACCAACATGTAGTATTGGAATGCAGTGTAACTTGTTATCGGACTTCAATGTACTCTCTCCATTGTTTCAATTTGCTTTTGTATACTGAAAACTAACACTGTATTCTTTAAAGAATTCAAGATCATCTCAAGAATTCCAACACCATTATACAAGGGGATCAAGAAGCCATGCAGCTCCGGCTTCATTTGGCTCAATGCCATTTAACCCCAGCAATCTTGCAAGCATGTTCATGGCGGCTGCAAATGCGGGTCAGGGGTCACATTCTCAAGAAGGTCAAGAAGATGCCAATAGTAGTGGAGCTAATGAACCGGAAATTCGATTTGGGGGCAATGTTAATGTAAACCAAGATCAAATTCCTCAGGAACTAAGAGGTGCCTTTCAATCCGTGATGCATATGTTTTCAGGGAATGCACCTCCTGGGCAACCGCATGATCAAATGAATGGAAGTCATGAAGATGCCAATAGTGAAGATAACGAAGCCGATATTCAATTCGGGGGCAATGTTAATTTAAATTCTGATCAAATCCCTCAGGAACTAAGTGGTGTCTTTCAAAATGTGATGGAGATGTTATCAGGGAATGCACCTCCTGGGCAACCACATGATCAAACGAATGAAAGAACAGCACCAAACTAA

Protein sequence

>MS.gene026628.t1

MEKSGRGLFNLKNLAESLKTLGNKAMQSKQYFDAIELYNCAIAIYEKSAVYYCNRAAAYTQINRYTEAIQDSLRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFKKALQLDPNNESVKENIRVAEHKLMEERHRADHNQNSRSSQEFQHHYTRGSRSHAAPASFGSMPFNPSNLASMFMAAANAGQGSHSQEGQEDANSSGANEPEIRFGGNVNVNQDQIPQELRGAFQSVMHMFSGNAPPGQPHDQMNGSHEDANSEDNEADIQFGGNVNLNSDQIPQELSGVFQNVMEMLSGNAPPGQPHDQTNERTAPN