Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038546.t1 | XP_013445984.1 | 97.4 | 384 | 10 | 0 | 1 | 384 | 1 | 384 | 1.20E-202 | 715.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038546.t1 | Q9ZUC1 | 71.8 | 386 | 103 | 2 | 2 | 384 | 4 | 386 | 2.2e-146 | 520.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038546.t1 | A0A072TS46 | 97.4 | 384 | 10 | 0 | 1 | 384 | 1 | 384 | 8.3e-203 | 715.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066288 | MS.gene038546 | PPI |
| MS.gene99026 | MS.gene038546 | PPI |
| MS.gene038546 | MS.gene49595 | PPI |
| MS.gene032779 | MS.gene038546 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038546.t1 | MTR_8g064610 | 97.396 | 384 | 10 | 0 | 1 | 384 | 1 | 384 | 0.0 | 749 |
| MS.gene038546.t1 | MTR_7g034395 | 72.581 | 310 | 84 | 1 | 76 | 384 | 8 | 317 | 9.21e-146 | 416 |
| MS.gene038546.t1 | MTR_6g012170 | 68.790 | 314 | 97 | 1 | 72 | 384 | 7 | 320 | 1.39e-142 | 408 |
| MS.gene038546.t1 | MTR_6g012160 | 68.641 | 287 | 89 | 1 | 72 | 357 | 7 | 293 | 4.23e-126 | 365 |
| MS.gene038546.t1 | MTR_8g035630 | 47.097 | 310 | 159 | 4 | 77 | 384 | 5 | 311 | 1.17e-86 | 266 |
| MS.gene038546.t1 | MTR_8g035880 | 47.712 | 306 | 155 | 4 | 77 | 380 | 5 | 307 | 2.83e-86 | 265 |
| MS.gene038546.t1 | MTR_6g012140 | 59.701 | 134 | 54 | 0 | 243 | 376 | 3 | 136 | 1.67e-52 | 171 |
| MS.gene038546.t1 | MTR_4g033205 | 36.842 | 342 | 163 | 13 | 76 | 382 | 6 | 329 | 2.76e-41 | 148 |
| MS.gene038546.t1 | MTR_4g032995 | 36.842 | 342 | 163 | 13 | 76 | 382 | 6 | 329 | 4.55e-41 | 147 |
| MS.gene038546.t1 | MTR_4g036310 | 35.015 | 337 | 172 | 9 | 76 | 380 | 6 | 327 | 3.43e-38 | 140 |
| MS.gene038546.t1 | MTR_1319s0010 | 66.304 | 92 | 31 | 0 | 137 | 228 | 3 | 94 | 1.76e-36 | 129 |
| MS.gene038546.t1 | MTR_4g036260 | 36.364 | 275 | 139 | 7 | 134 | 382 | 44 | 308 | 1.21e-31 | 122 |
| MS.gene038546.t1 | MTR_7g055743 | 31.700 | 347 | 181 | 10 | 70 | 379 | 39 | 366 | 1.62e-31 | 123 |
| MS.gene038546.t1 | MTR_2g078520 | 29.365 | 378 | 202 | 10 | 40 | 380 | 9 | 358 | 3.37e-28 | 114 |
| MS.gene038546.t1 | MTR_2g012420 | 30.473 | 338 | 187 | 13 | 76 | 380 | 1 | 323 | 1.22e-27 | 111 |
| MS.gene038546.t1 | MTR_4g050760 | 30.178 | 338 | 188 | 13 | 76 | 380 | 1 | 323 | 1.39e-25 | 105 |
| MS.gene038546.t1 | MTR_2g012380 | 30.178 | 338 | 188 | 13 | 76 | 380 | 1 | 323 | 1.39e-25 | 105 |
| MS.gene038546.t1 | MTR_6g012100 | 66.102 | 59 | 20 | 0 | 326 | 384 | 11 | 69 | 1.94e-22 | 90.1 |
| MS.gene038546.t1 | MTR_2g012380 | 33.913 | 230 | 131 | 8 | 76 | 297 | 1 | 217 | 3.13e-21 | 92.8 |
| MS.gene038546.t1 | MTR_4g086410 | 29.063 | 320 | 174 | 10 | 101 | 380 | 314 | 620 | 1.98e-20 | 93.6 |
| MS.gene038546.t1 | MTR_4g086400 | 28.125 | 320 | 177 | 10 | 101 | 380 | 174 | 480 | 2.06e-20 | 93.2 |
| MS.gene038546.t1 | MTR_4g086400 | 28.125 | 320 | 177 | 10 | 101 | 380 | 314 | 620 | 2.25e-20 | 93.2 |
| MS.gene038546.t1 | MTR_4g036170 | 31.136 | 273 | 146 | 8 | 134 | 380 | 46 | 302 | 1.34e-18 | 85.9 |
| MS.gene038546.t1 | MTR_4g029500 | 29.201 | 363 | 206 | 15 | 54 | 382 | 29 | 374 | 8.22e-18 | 84.3 |
| MS.gene038546.t1 | MTR_6g039950 | 52.308 | 65 | 30 | 1 | 72 | 135 | 15 | 79 | 2.28e-16 | 73.9 |
| MS.gene038546.t1 | MTR_3g093620 | 28.479 | 309 | 174 | 10 | 106 | 380 | 40 | 335 | 3.11e-13 | 70.5 |
| MS.gene038546.t1 | MTR_2g012420 | 28.796 | 191 | 100 | 8 | 222 | 380 | 5 | 191 | 7.19e-12 | 64.3 |
| MS.gene038546.t1 | MTR_8g095220 | 34.641 | 153 | 81 | 8 | 177 | 315 | 195 | 342 | 3.98e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038546.t1 | AT1G23740 | 72.368 | 380 | 90 | 3 | 14 | 384 | 13 | 386 | 0.0 | 532 |
| MS.gene038546.t1 | AT4G13010 | 34.808 | 339 | 174 | 10 | 76 | 382 | 6 | 329 | 2.52e-35 | 132 |
| MS.gene038546.t1 | AT3G15090 | 34.008 | 247 | 150 | 7 | 77 | 317 | 33 | 272 | 1.65e-28 | 114 |
| MS.gene038546.t1 | AT4G21580 | 30.564 | 337 | 188 | 12 | 76 | 380 | 1 | 323 | 4.14e-26 | 107 |
| MS.gene038546.t1 | AT4G21580 | 30.564 | 337 | 182 | 13 | 76 | 380 | 1 | 317 | 4.33e-25 | 104 |
| MS.gene038546.t1 | AT3G56460 | 29.560 | 318 | 176 | 11 | 98 | 380 | 32 | 336 | 2.84e-20 | 91.3 |
| MS.gene038546.t1 | AT1G49670 | 27.564 | 312 | 177 | 9 | 105 | 380 | 318 | 616 | 7.13e-19 | 89.0 |
| MS.gene038546.t1 | AT5G61510 | 28.726 | 369 | 215 | 13 | 44 | 382 | 56 | 406 | 3.47e-18 | 85.9 |
| MS.gene038546.t1 | AT1G49670 | 25.826 | 333 | 179 | 8 | 105 | 380 | 318 | 639 | 1.73e-17 | 84.7 |
| MS.gene038546.t1 | AT3G45770 | 28.267 | 329 | 200 | 11 | 41 | 348 | 11 | 324 | 7.85e-17 | 81.6 |
| MS.gene038546.t1 | AT5G61510 | 28.395 | 324 | 188 | 12 | 89 | 382 | 40 | 349 | 1.14e-14 | 75.1 |
Find 91 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCCACTCTCTAAATA+TGG | 0.138626 | 8.4:+37165449 | None:intergenic |
| GGACCTTTGGGATCTATAAT+TGG | 0.222062 | 8.4:+37165422 | None:intergenic |
| GCCTAAACAATTTGGGTCTT+TGG | 0.239443 | 8.4:-37166473 | MS.gene038546:CDS |
| AAGAAGGCAGGGAAAGTTTA+AGG | 0.274790 | 8.4:-37167214 | MS.gene038546:CDS |
| TTAGATGGGCCTAAACAATT+TGG | 0.276099 | 8.4:-37166481 | MS.gene038546:CDS |
| ATTCTTGTTCTCAATGGTTC+TGG | 0.283840 | 8.4:-37166310 | MS.gene038546:CDS |
| ACCAAGGCATGCTAGATTCT+TGG | 0.306476 | 8.4:-37167436 | MS.gene038546:CDS |
| GCTTGGGTGTATGGAGAATA+TGG | 0.307432 | 8.4:-37167345 | MS.gene038546:CDS |
| GAAAAGTCTTGGAGCTGATT+TGG | 0.309843 | 8.4:-37165890 | MS.gene038546:CDS |
| GTTCCTGGCTATGATGTTGC+TGG | 0.312264 | 8.4:-37166583 | MS.gene038546:CDS |
| TGTGTCCATTAGACTGTTCC+TGG | 0.323261 | 8.4:-37166598 | MS.gene038546:intron |
| AGTTGGAAGCCTAGTGATTC+AGG | 0.332144 | 8.4:-37166284 | MS.gene038546:intron |
| GGCACTAAAACCTACAAGTT+TGG | 0.343137 | 8.4:-37166419 | MS.gene038546:CDS |
| TGAGACTGCTTATGAAGGTT+TGG | 0.356657 | 8.4:-37166362 | MS.gene038546:CDS |
| TGAGCAAAGTCCAAACTTGT+AGG | 0.358488 | 8.4:+37166409 | None:intergenic |
| GGCTACGGATTCTCCGCTTC+CGG | 0.367463 | 8.4:-37167193 | MS.gene038546:intron |
| CACTTCAAGCACTAGACATT+TGG | 0.377637 | 8.4:-37165920 | MS.gene038546:CDS |
| CAGAGCAGTGAAGGCAATAA+AGG | 0.383379 | 8.4:-37165567 | MS.gene038546:CDS |
| AGCAAAAGAGAATGGACCTT+TGG | 0.385814 | 8.4:+37165409 | None:intergenic |
| CCTTTCCACTCTCTAAATAT+GGG | 0.387466 | 8.4:+37165450 | None:intergenic |
| GAAATGAAGGCTTGGGTGTA+TGG | 0.398493 | 8.4:-37167354 | MS.gene038546:CDS |
| AAATCTATTCTTGTTCTCAA+TGG | 0.403553 | 8.4:-37166316 | MS.gene038546:CDS |
| TAGATGGGCCTAAACAATTT+GGG | 0.417483 | 8.4:-37166480 | MS.gene038546:CDS |
| GTGAATGAGAAAGCATTAGA+TGG | 0.420736 | 8.4:-37166496 | MS.gene038546:CDS |
| GGCAGTGTAGTAGCACTAAC+AGG | 0.429167 | 8.4:-37165539 | MS.gene038546:CDS |
| GCAAAAGAGAATGGACCTTT+GGG | 0.433468 | 8.4:+37165410 | None:intergenic |
| TCCTTCGGAAATGAAGGCTT+GGG | 0.433557 | 8.4:-37167361 | MS.gene038546:CDS |
| GCCAAAGACCCAAATTGTTT+AGG | 0.436010 | 8.4:+37166472 | None:intergenic |
| TTCCTGGCTATGATGTTGCT+GGG | 0.439986 | 8.4:-37166582 | MS.gene038546:CDS |
| ACAAGTTCCTTCGGAAATGA+AGG | 0.448707 | 8.4:-37167367 | MS.gene038546:CDS |
| TGTTGCTGTGCCTGATGTTA+AGG | 0.451705 | 8.4:-37167292 | MS.gene038546:CDS |
| TTCCTTCGGAAATGAAGGCT+TGG | 0.458870 | 8.4:-37167362 | MS.gene038546:CDS |
| ATTGAAACAAACAAAGCTAC+TGG | 0.463741 | 8.4:-37165362 | MS.gene038546:CDS |
| GCCTGATGTTAAGGAAGATC+AGG | 0.465613 | 8.4:-37167283 | MS.gene038546:CDS |
| CTCAATGGTTCTGGTGGAGT+TGG | 0.465977 | 8.4:-37166301 | MS.gene038546:CDS |
| AAGGAAAATCTGAGAGAAAG+TGG | 0.473230 | 8.4:+37167516 | None:intergenic |
| GCTGCTCTTAACCCTGTTGA+TGG | 0.476989 | 8.4:-37167240 | MS.gene038546:CDS |
| TGAAGGAAGTGAAGGAAGAA+TGG | 0.477949 | 8.4:+37167545 | None:intergenic |
| GCTATTGAGACTGCTTATGA+AGG | 0.483022 | 8.4:-37166367 | MS.gene038546:CDS |
| CTTGTTCTCAATGGTTCTGG+TGG | 0.485138 | 8.4:-37166307 | MS.gene038546:CDS |
| TTTCTTCAGAACAGCTCCAT+TGG | 0.486934 | 8.4:+37165478 | None:intergenic |
| GCAACCTGAGCAAAAGAGAA+TGG | 0.487160 | 8.4:+37165401 | None:intergenic |
| ACCTGATCTTCCTTAACATC+AGG | 0.488261 | 8.4:+37167282 | None:intergenic |
| AGAGAAAGTGGTGAAGATGA+AGG | 0.494341 | 8.4:+37167528 | None:intergenic |
| TTGGAGCTACTGAAAAGTCT+TGG | 0.497793 | 8.4:-37165901 | MS.gene038546:CDS |
| TATGAAGGTTTGGAGAGGAC+TGG | 0.503871 | 8.4:-37166352 | MS.gene038546:CDS |
| GAAGGTTGGCAGCGAAGTAA+AGG | 0.506684 | 8.4:-37166551 | MS.gene038546:CDS |
| TTTATCTGATTCATGGGATG+GGG | 0.509890 | 8.4:+37165324 | None:intergenic |
| AGCTGTTGAGGAGAAATTGT+TGG | 0.514874 | 8.4:-37166440 | MS.gene038546:CDS |
| AGATTTGTAGTGACTTCCAA+TGG | 0.518081 | 8.4:-37165494 | MS.gene038546:CDS |
| GCAGGGAAAGTTTAAGGCTA+CGG | 0.519335 | 8.4:-37167208 | MS.gene038546:CDS |
| GAAAGTGACACAAGTTCCTT+CGG | 0.521617 | 8.4:-37167376 | MS.gene038546:CDS |
| ACCAAGAATCTAGCATGCCT+TGG | 0.523278 | 8.4:+37167435 | None:intergenic |
| GGCTGAGTACACAGCTGTTG+AGG | 0.523349 | 8.4:-37166452 | MS.gene038546:CDS |
| TGTTGATGGTAAAAGAAGGC+AGG | 0.523502 | 8.4:-37167226 | MS.gene038546:CDS |
| AAAGTCGGCGATGAAGTGTA+TGG | 0.526704 | 8.4:-37166523 | MS.gene038546:CDS |
| GTCACTACAAATCTGAATCC+AGG | 0.545336 | 8.4:+37165503 | None:intergenic |
| GGTGAAGATGAAGGAAGTGA+AGG | 0.546247 | 8.4:+37167537 | None:intergenic |
| GATGTAGTTTATGATGCCAT+TGG | 0.546289 | 8.4:-37165820 | MS.gene038546:intron |
| ACAGGAGCTGTTACACCACC+TGG | 0.561590 | 8.4:-37165521 | MS.gene038546:CDS |
| GAGTGAATAATCACCGGAAG+CGG | 0.565819 | 8.4:+37167180 | None:intergenic |
| ACCCCAGCAACATCATAGCC+AGG | 0.566870 | 8.4:+37166580 | None:intergenic |
| GCAATGTGACAGAGCAGTGA+AGG | 0.567763 | 8.4:-37165576 | MS.gene038546:CDS |
| AACATCAGGCACAGCAACAT+TGG | 0.570963 | 8.4:+37167296 | None:intergenic |
| AATGGTGAGGTGAGAAGTTG+TGG | 0.574018 | 8.4:+37167563 | None:intergenic |
| ACCCTGTTGATGGTAAAAGA+AGG | 0.577796 | 8.4:-37167230 | MS.gene038546:CDS |
| ATCTACTACTGCTTCATCTG+AGG | 0.581286 | 8.4:-37167403 | MS.gene038546:CDS |
| CTAAACCCATATTTAGAGAG+TGG | 0.581322 | 8.4:-37165455 | MS.gene038546:CDS |
| GAAGTAAAGGACTTCAAAGT+CGG | 0.582450 | 8.4:-37166538 | MS.gene038546:CDS |
| TAAGCAGTCTCAATAGCAAG+AGG | 0.589060 | 8.4:+37166373 | None:intergenic |
| TGAATGAGAAAGCATTAGAT+GGG | 0.597261 | 8.4:-37166495 | MS.gene038546:CDS |
| ACCCAAGCCTTCATTTCCGA+AGG | 0.600966 | 8.4:+37167360 | None:intergenic |
| GCTGGGGTCGTAGTGAAGGT+TGG | 0.602197 | 8.4:-37166565 | MS.gene038546:CDS |
| AGAACAAGAATAGATTTACC+AGG | 0.605332 | 8.4:+37166322 | None:intergenic |
| GTTGATGGTAAAAGAAGGCA+GGG | 0.608172 | 8.4:-37167225 | MS.gene038546:CDS |
| GGTGAGGTGAGAAGTTGTGG+TGG | 0.610962 | 8.4:+37167566 | None:intergenic |
| CTCTCTTGTCTTCTTCACCA+AGG | 0.628610 | 8.4:-37167452 | MS.gene038546:CDS |
| TGTTGCTGGGGTCGTAGTGA+AGG | 0.634534 | 8.4:-37166569 | MS.gene038546:CDS |
| AACAAACAAAGCTACTGGAA+AGG | 0.637522 | 8.4:-37165357 | MS.gene038546:CDS |
| TGGGTGTATGGAGAATATGG+AGG | 0.638579 | 8.4:-37167342 | MS.gene038546:CDS |
| GCAGTGAAGGCAATAAAGGA+AGG | 0.640198 | 8.4:-37165563 | MS.gene038546:CDS |
| CAAATGTCTAGTGCTTGAAG+TGG | 0.641907 | 8.4:+37165921 | None:intergenic |
| CTGCTTATGAAGGTTTGGAG+AGG | 0.648485 | 8.4:-37166357 | MS.gene038546:CDS |
| GTGAAGGCAATAAAGGAAGG+TGG | 0.652587 | 8.4:-37165560 | MS.gene038546:CDS |
| CCCATATTTAGAGAGTGGAA+AGG | 0.653180 | 8.4:-37165450 | MS.gene038546:CDS |
| GAGTAAATACCTGAATCACT+AGG | 0.653524 | 8.4:+37166275 | None:intergenic |
| TCCTGGCTATGATGTTGCTG+GGG | 0.668886 | 8.4:-37166581 | MS.gene038546:CDS |
| TTTGGCTATTGACTACACAA+AGG | 0.684942 | 8.4:-37165872 | MS.gene038546:CDS |
| AAGCCAATTATAGATCCCAA+AGG | 0.697488 | 8.4:-37165425 | MS.gene038546:CDS |
| GAAGTGAAGGAAGAATGGTG+AGG | 0.729256 | 8.4:+37167550 | None:intergenic |
| ACTACAAATCTGAATCCAGG+TGG | 0.755064 | 8.4:+37165506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTTCAAACAATT+TGG | - | chr8.4:37167161-37167180 | MS.gene038546:intron | 10.0% |
| !!! | GTGTATTTTATTAATTAGTT+TGG | + | chr8.4:37167231-37167250 | None:intergenic | 15.0% |
| !! | CAATTAAGTTTATGTATTCT+AGG | - | chr8.4:37166256-37166275 | MS.gene038546:intron | 20.0% |
| !! | TTAAAATTTCTTGTGCATAA+GGG | - | chr8.4:37166872-37166891 | MS.gene038546:intron | 20.0% |
| !!! | TAAACTACATCAAATTTTTC+TGG | + | chr8.4:37167081-37167100 | None:intergenic | 20.0% |
| !!! | TGAAATTTTTTATCGAAGAT+TGG | + | chr8.4:37167154-37167173 | None:intergenic | 20.0% |
| !!! | TGGTTATAATTTTGAGAAAA+TGG | + | chr8.4:37166735-37166754 | None:intergenic | 20.0% |
| !!! | TTAAGTACTGAAATCAAATT+TGG | - | chr8.4:37166284-37166303 | MS.gene038546:intron | 20.0% |
| !!! | TTACTTTTGCAAGAAAATTT+AGG | - | chr8.4:37165987-37166006 | MS.gene038546:intron | 20.0% |
| !!! | TTTAAAATTTCTTGTGCATA+AGG | - | chr8.4:37166871-37166890 | MS.gene038546:intron | 20.0% |
| ! | AAATCTATTCTTGTTCTCAA+TGG | - | chr8.4:37166594-37166613 | MS.gene038546:intron | 25.0% |
| !! | GAAAAGAAGAATTTTACCAA+TGG | + | chr8.4:37167109-37167128 | None:intergenic | 25.0% |
| !!! | CAAGTTTTTTGGTTACTTTT+TGG | + | chr8.4:37165430-37165449 | None:intergenic | 25.0% |
| !!! | GTTTTTGTTTTTCTATGTTG+TGG | - | chr8.4:37165765-37165784 | MS.gene038546:intron | 25.0% |
| !!! | TGAAGATGATTTTAGAATTG+AGG | - | chr8.4:37165911-37165930 | MS.gene038546:CDS | 25.0% |
| !!! | TTTTTTGGTTACTTTTTGGT+TGG | + | chr8.4:37165426-37165445 | None:intergenic | 25.0% |
| AAAAGAGAGTGAATAATCAC+CGG | + | chr8.4:37165739-37165758 | None:intergenic | 30.0% | |
| AAAAGTTCTTAGTCAGGTAA+AGG | + | chr8.4:37166832-37166851 | None:intergenic | 30.0% | |
| AAAGTTCTTAGTCAGGTAAA+GGG | + | chr8.4:37166831-37166850 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACACCTTA+TGG | + | chr8.4:37166138-37166157 | None:intergenic | 30.0% | |
| AGAACAAGAATAGATTTACC+AGG | + | chr8.4:37166591-37166610 | None:intergenic | 30.0% | |
| AGCAAAAGAAGAAAAGGTTA+TGG | - | chr8.4:37165849-37165868 | MS.gene038546:CDS | 30.0% | |
| ATGATATTGACACATTGTGT+TGG | + | chr8.4:37166755-37166774 | None:intergenic | 30.0% | |
| ATTGAAACAAACAAAGCTAC+TGG | - | chr8.4:37167548-37167567 | MS.gene038546:CDS | 30.0% | |
| CTACAATATTTCAGCATGAA+AGG | + | chr8.4:37166672-37166691 | None:intergenic | 30.0% | |
| ! | TTTTAGACGAAGTATGTTTC+TGG | - | chr8.4:37166848-37166867 | MS.gene038546:intron | 30.0% |
| !! | ACTGATTTTCAAAAACTCTC+TGG | + | chr8.4:37167187-37167206 | None:intergenic | 30.0% |
| !! | TGAATGAGAAAGCATTAGAT+GGG | - | chr8.4:37166415-37166434 | MS.gene038546:CDS | 30.0% |
| !!! | GAGTTTTGAGACAAGTTTTT+TGG | + | chr8.4:37165441-37165460 | None:intergenic | 30.0% |
| AACAAACAAAGCTACTGGAA+AGG | - | chr8.4:37167553-37167572 | MS.gene038546:CDS | 35.0% | |
| AAGACGCGTTTGTAGATTTA+AGG | - | chr8.4:37167276-37167295 | MS.gene038546:CDS | 35.0% | |
| AAGCCAATTATAGATCCCAA+AGG | - | chr8.4:37167485-37167504 | MS.gene038546:CDS | 35.0% | |
| AAGGAAAATCTGAGAGAAAG+TGG | + | chr8.4:37165397-37165416 | None:intergenic | 35.0% | |
| ACCTTTCCACTCTCTAAATA+TGG | + | chr8.4:37167464-37167483 | None:intergenic | 35.0% | |
| AGATTTGTAGTGACTTCCAA+TGG | - | chr8.4:37167416-37167435 | MS.gene038546:CDS | 35.0% | |
| AGTTTATAGACCAAAACGTG+AGG | - | chr8.4:37167204-37167223 | MS.gene038546:CDS | 35.0% | |
| ATTCTTGTTCTCAATGGTTC+TGG | - | chr8.4:37166600-37166619 | MS.gene038546:intron | 35.0% | |
| CAATGTGTCAATATCATGTC+CGG | - | chr8.4:37166758-37166777 | MS.gene038546:intron | 35.0% | |
| CCAAACTAACATCCTTTACT+TGG | - | chr8.4:37167300-37167319 | MS.gene038546:CDS | 35.0% | |
| CCAAGTAAAGGATGTTAGTT+TGG | + | chr8.4:37167303-37167322 | None:intergenic | 35.0% | |
| CCTTTCCACTCTCTAAATAT+GGG | + | chr8.4:37167463-37167482 | None:intergenic | 35.0% | |
| CTAAACCCATATTTAGAGAG+TGG | - | chr8.4:37167455-37167474 | MS.gene038546:CDS | 35.0% | |
| GAAGTAAAGGACTTCAAAGT+CGG | - | chr8.4:37166372-37166391 | MS.gene038546:CDS | 35.0% | |
| GAGTAAATACCTGAATCACT+AGG | + | chr8.4:37166638-37166657 | None:intergenic | 35.0% | |
| GATGTAGTTTATGATGCCAT+TGG | - | chr8.4:37167090-37167109 | MS.gene038546:intron | 35.0% | |
| GCTTCTAGCAAAAGAAGAAA+AGG | - | chr8.4:37165843-37165862 | MS.gene038546:CDS | 35.0% | |
| GGATTCAATAGCTATGATAG+TGG | - | chr8.4:37165870-37165889 | MS.gene038546:CDS | 35.0% | |
| TAGATGGGCCTAAACAATTT+GGG | - | chr8.4:37166430-37166449 | MS.gene038546:CDS | 35.0% | |
| TCGCTAATTACATGTCCATA+AGG | - | chr8.4:37166120-37166139 | MS.gene038546:intron | 35.0% | |
| TCGTCTAAAAGTTCTTAGTC+AGG | + | chr8.4:37166838-37166857 | None:intergenic | 35.0% | |
| TGGAATCTGTGTGAAGATAT+TGG | - | chr8.4:37165953-37165972 | MS.gene038546:CDS | 35.0% | |
| TTAGATGGGCCTAAACAATT+TGG | - | chr8.4:37166429-37166448 | MS.gene038546:CDS | 35.0% | |
| ! | AGGTGTTTTCAGCTTATTTC+TGG | - | chr8.4:37166140-37166159 | MS.gene038546:intron | 35.0% |
| ! | CAGCTAGCTAAACAAGTTTT+TGG | - | chr8.4:37166949-37166968 | MS.gene038546:intron | 35.0% |
| ! | TTTGGCTATTGACTACACAA+AGG | - | chr8.4:37167038-37167057 | MS.gene038546:intron | 35.0% |
| !! | GTGAATGAGAAAGCATTAGA+TGG | - | chr8.4:37166414-37166433 | MS.gene038546:CDS | 35.0% |
| !!! | ACTTTTTGGTTGGAAAGTGA+AGG | + | chr8.4:37165416-37165435 | None:intergenic | 35.0% |
| AAGAAGGCAGGGAAAGTTTA+AGG | - | chr8.4:37165696-37165715 | MS.gene038546:intron | 40.0% | |
| ACAAGTTCCTTCGGAAATGA+AGG | - | chr8.4:37165543-37165562 | MS.gene038546:CDS | 40.0% | |
| ACACAGATTCCACCCAATTT+CGG | + | chr8.4:37165945-37165964 | None:intergenic | 40.0% | |
| ACCTGATCTTCCTTAACATC+AGG | + | chr8.4:37165631-37165650 | None:intergenic | 40.0% | |
| ACTACAAATCTGAATCCAGG+TGG | + | chr8.4:37167407-37167426 | None:intergenic | 40.0% | |
| AGAGAAAGTGGTGAAGATGA+AGG | + | chr8.4:37165385-37165404 | None:intergenic | 40.0% | |
| AGCAAAAGAGAATGGACCTT+TGG | + | chr8.4:37167504-37167523 | None:intergenic | 40.0% | |
| AGCTAGCTGCAAGTCATTAA+AGG | + | chr8.4:37166938-37166957 | None:intergenic | 40.0% | |
| AGCTGTTGAGGAGAAATTGT+TGG | - | chr8.4:37166470-37166489 | MS.gene038546:CDS | 40.0% | |
| ATCTACTACTGCTTCATCTG+AGG | - | chr8.4:37165507-37165526 | MS.gene038546:CDS | 40.0% | |
| CAAATGTCTAGTGCTTGAAG+TGG | + | chr8.4:37166992-37167011 | None:intergenic | 40.0% | |
| CACTTCAAGCACTAGACATT+TGG | - | chr8.4:37166990-37167009 | MS.gene038546:intron | 40.0% | |
| CATGTAATCATCACATGCGT+CGG | + | chr8.4:37166703-37166722 | None:intergenic | 40.0% | |
| CATGTACTTGTGAGACTGTT+TGG | - | chr8.4:37166082-37166101 | MS.gene038546:intron | 40.0% | |
| CCCATATTTAGAGAGTGGAA+AGG | - | chr8.4:37167460-37167479 | MS.gene038546:CDS | 40.0% | |
| GAAAAGTCTTGGAGCTGATT+TGG | - | chr8.4:37167020-37167039 | MS.gene038546:intron | 40.0% | |
| GAAAGTGACACAAGTTCCTT+CGG | - | chr8.4:37165534-37165553 | MS.gene038546:CDS | 40.0% | |
| GAGGAAAGCTTACCGAAATT+GGG | - | chr8.4:37165930-37165949 | MS.gene038546:CDS | 40.0% | |
| GCAAAAGAGAATGGACCTTT+GGG | + | chr8.4:37167503-37167522 | None:intergenic | 40.0% | |
| GCCAAAGACCCAAATTGTTT+AGG | + | chr8.4:37166441-37166460 | None:intergenic | 40.0% | |
| GCCTAAACAATTTGGGTCTT+TGG | - | chr8.4:37166437-37166456 | MS.gene038546:CDS | 40.0% | |
| GCTATTGAGACTGCTTATGA+AGG | - | chr8.4:37166543-37166562 | MS.gene038546:CDS | 40.0% | |
| GCTGCAAGTCATTAAAGGTA+TGG | + | chr8.4:37166933-37166952 | None:intergenic | 40.0% | |
| GGCACTAAAACCTACAAGTT+TGG | - | chr8.4:37166491-37166510 | MS.gene038546:CDS | 40.0% | |
| GTCACTACAAATCTGAATCC+AGG | + | chr8.4:37167410-37167429 | None:intergenic | 40.0% | |
| GTTATTGCTCTATGAAGCAC+AGG | + | chr8.4:37166792-37166811 | None:intergenic | 40.0% | |
| TAAGCAGTCTCAATAGCAAG+AGG | + | chr8.4:37166540-37166559 | None:intergenic | 40.0% | |
| TGAAGGAAGTGAAGGAAGAA+TGG | + | chr8.4:37165368-37165387 | None:intergenic | 40.0% | |
| TGAGACTGCTTATGAAGGTT+TGG | - | chr8.4:37166548-37166567 | MS.gene038546:CDS | 40.0% | |
| TGAGCAAAGTCCAAACTTGT+AGG | + | chr8.4:37166504-37166523 | None:intergenic | 40.0% | |
| TGAGGAAAGCTTACCGAAAT+TGG | - | chr8.4:37165929-37165948 | MS.gene038546:CDS | 40.0% | |
| TTGGAGCTACTGAAAAGTCT+TGG | - | chr8.4:37167009-37167028 | MS.gene038546:intron | 40.0% | |
| TTTCTTCAGAACAGCTCCAT+TGG | + | chr8.4:37167435-37167454 | None:intergenic | 40.0% | |
| ! | CCTTTACTTGGTGATTTGCA+GGG | - | chr8.4:37167312-37167331 | MS.gene038546:CDS | 40.0% |
| ! | GCCTTCTTTTACCATCAACA+GGG | + | chr8.4:37165684-37165703 | None:intergenic | 40.0% |
| ! | TCCTTTACTTGGTGATTTGC+AGG | - | chr8.4:37167311-37167330 | MS.gene038546:CDS | 40.0% |
| ! | TGCCTTCTTTTACCATCAAC+AGG | + | chr8.4:37165685-37165704 | None:intergenic | 40.0% |
| !! | ACCCTGTTGATGGTAAAAGA+AGG | - | chr8.4:37165680-37165699 | MS.gene038546:intron | 40.0% |
| !! | GGACCTTTGGGATCTATAAT+TGG | + | chr8.4:37167491-37167510 | None:intergenic | 40.0% |
| !! | GTTGATGGTAAAAGAAGGCA+GGG | - | chr8.4:37165685-37165704 | MS.gene038546:intron | 40.0% |
| !! | TGTTGATGGTAAAAGAAGGC+AGG | - | chr8.4:37165684-37165703 | MS.gene038546:intron | 40.0% |
| !! | TTAGTTTGGTCCTCACGTTT+TGG | + | chr8.4:37167217-37167236 | None:intergenic | 40.0% |
| AAAGTCGGCGATGAAGTGTA+TGG | - | chr8.4:37166387-37166406 | MS.gene038546:CDS | 45.0% | |
| AACATCAGGCACAGCAACAT+TGG | + | chr8.4:37165617-37165636 | None:intergenic | 45.0% | |
| AATGGTGAGGTGAGAAGTTG+TGG | + | chr8.4:37165350-37165369 | None:intergenic | 45.0% | |
| ACCAAGAATCTAGCATGCCT+TGG | + | chr8.4:37165478-37165497 | None:intergenic | 45.0% | |
| ACCAAGGCATGCTAGATTCT+TGG | - | chr8.4:37165474-37165493 | MS.gene038546:CDS | 45.0% | |
| AGTTGGAAGCCTAGTGATTC+AGG | - | chr8.4:37166626-37166645 | MS.gene038546:intron | 45.0% | |
| CAGAGCAGTGAAGGCAATAA+AGG | - | chr8.4:37167343-37167362 | MS.gene038546:CDS | 45.0% | |
| CATAGCCAGGAACAGTCTAA+TGG | + | chr8.4:37166320-37166339 | None:intergenic | 45.0% | |
| CCCTGCAAATCACCAAGTAA+AGG | + | chr8.4:37167315-37167334 | None:intergenic | 45.0% | |
| CTCTCTTGTCTTCTTCACCA+AGG | - | chr8.4:37165458-37165477 | MS.gene038546:CDS | 45.0% | |
| CTGCTTATGAAGGTTTGGAG+AGG | - | chr8.4:37166553-37166572 | MS.gene038546:CDS | 45.0% | |
| GAAAGCTTACCGAAATTGGG+TGG | - | chr8.4:37165933-37165952 | MS.gene038546:CDS | 45.0% | |
| GAAATGAAGGCTTGGGTGTA+TGG | - | chr8.4:37165556-37165575 | MS.gene038546:CDS | 45.0% | |
| GAAGTGAAGGAAGAATGGTG+AGG | + | chr8.4:37165363-37165382 | None:intergenic | 45.0% | |
| GAGTGAATAATCACCGGAAG+CGG | + | chr8.4:37165733-37165752 | None:intergenic | 45.0% | |
| GCAACCTGAGCAAAAGAGAA+TGG | + | chr8.4:37167512-37167531 | None:intergenic | 45.0% | |
| GCAGTGAAGGCAATAAAGGA+AGG | - | chr8.4:37167347-37167366 | MS.gene038546:CDS | 45.0% | |
| GCCTGATGTTAAGGAAGATC+AGG | - | chr8.4:37165627-37165646 | MS.gene038546:intron | 45.0% | |
| GCTTGGGTGTATGGAGAATA+TGG | - | chr8.4:37165565-37165584 | MS.gene038546:CDS | 45.0% | |
| GGTGAAGATGAAGGAAGTGA+AGG | + | chr8.4:37165376-37165395 | None:intergenic | 45.0% | |
| GTGAAGGCAATAAAGGAAGG+TGG | - | chr8.4:37167350-37167369 | MS.gene038546:CDS | 45.0% | |
| TATGAAGGTTTGGAGAGGAC+TGG | - | chr8.4:37166558-37166577 | MS.gene038546:CDS | 45.0% | |
| TCCTTCGGAAATGAAGGCTT+GGG | - | chr8.4:37165549-37165568 | MS.gene038546:CDS | 45.0% | |
| TGGGTGTATGGAGAATATGG+AGG | - | chr8.4:37165568-37165587 | MS.gene038546:CDS | 45.0% | |
| TGTGTCCATTAGACTGTTCC+TGG | - | chr8.4:37166312-37166331 | MS.gene038546:CDS | 45.0% | |
| TGTTGCTGTGCCTGATGTTA+AGG | - | chr8.4:37165618-37165637 | MS.gene038546:intron | 45.0% | |
| TTCCTGGCTATGATGTTGCT+GGG | - | chr8.4:37166328-37166347 | MS.gene038546:CDS | 45.0% | |
| TTCCTTCGGAAATGAAGGCT+TGG | - | chr8.4:37165548-37165567 | MS.gene038546:CDS | 45.0% | |
| ! | AGGTCCATTCTCTTTTGCTC+AGG | - | chr8.4:37167505-37167524 | MS.gene038546:CDS | 45.0% |
| ! | GCAGGGAAAGTTTAAGGCTA+CGG | - | chr8.4:37165702-37165721 | MS.gene038546:intron | 45.0% |
| !! | CTTGTTCTCAATGGTTCTGG+TGG | - | chr8.4:37166603-37166622 | MS.gene038546:intron | 45.0% |
| ACCCAAGCCTTCATTTCCGA+AGG | + | chr8.4:37165553-37165572 | None:intergenic | 50.0% | |
| GAAGGTTGGCAGCGAAGTAA+AGG | - | chr8.4:37166359-37166378 | MS.gene038546:CDS | 50.0% | |
| GCAATGTGACAGAGCAGTGA+AGG | - | chr8.4:37167334-37167353 | MS.gene038546:CDS | 50.0% | |
| GCTGCTCTTAACCCTGTTGA+TGG | - | chr8.4:37165670-37165689 | MS.gene038546:intron | 50.0% | |
| GGCAGTGTAGTAGCACTAAC+AGG | - | chr8.4:37167371-37167390 | MS.gene038546:CDS | 50.0% | |
| GTTCCTGGCTATGATGTTGC+TGG | - | chr8.4:37166327-37166346 | MS.gene038546:CDS | 50.0% | |
| TCCTGGCTATGATGTTGCTG+GGG | - | chr8.4:37166329-37166348 | MS.gene038546:CDS | 50.0% | |
| ! | GAGAGGACTGGATTTTCTCC+TGG | - | chr8.4:37166570-37166589 | MS.gene038546:CDS | 50.0% |
| !! | CTCAATGGTTCTGGTGGAGT+TGG | - | chr8.4:37166609-37166628 | MS.gene038546:intron | 50.0% |
| ACAGGAGCTGTTACACCACC+TGG | - | chr8.4:37167389-37167408 | MS.gene038546:CDS | 55.0% | |
| ACCCCAGCAACATCATAGCC+AGG | + | chr8.4:37166333-37166352 | None:intergenic | 55.0% | |
| GGCTGAGTACACAGCTGTTG+AGG | - | chr8.4:37166458-37166477 | MS.gene038546:CDS | 55.0% | |
| GGTGAGGTGAGAAGTTGTGG+TGG | + | chr8.4:37165347-37165366 | None:intergenic | 55.0% | |
| TGAAGCACAGGCACAGACAC+CGG | + | chr8.4:37166780-37166799 | None:intergenic | 55.0% | |
| TGTTGCTGGGGTCGTAGTGA+AGG | - | chr8.4:37166341-37166360 | MS.gene038546:CDS | 55.0% | |
| GCTGGGGTCGTAGTGAAGGT+TGG | - | chr8.4:37166345-37166364 | MS.gene038546:CDS | 60.0% | |
| GGCTACGGATTCTCCGCTTC+CGG | - | chr8.4:37165717-37165736 | MS.gene038546:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 37165334 | 37167598 | 37165334 | ID=MS.gene038546 |
| chr8.4 | mRNA | 37165334 | 37167598 | 37165334 | ID=MS.gene038546.t1;Parent=MS.gene038546 |
| chr8.4 | exon | 37167194 | 37167598 | 37167194 | ID=MS.gene038546.t1.exon1;Parent=MS.gene038546.t1 |
| chr8.4 | CDS | 37167194 | 37167598 | 37167194 | ID=cds.MS.gene038546.t1;Parent=MS.gene038546.t1 |
| chr8.4 | exon | 37166285 | 37166608 | 37166285 | ID=MS.gene038546.t1.exon2;Parent=MS.gene038546.t1 |
| chr8.4 | CDS | 37166285 | 37166608 | 37166285 | ID=cds.MS.gene038546.t1;Parent=MS.gene038546.t1 |
| chr8.4 | exon | 37165821 | 37165980 | 37165821 | ID=MS.gene038546.t1.exon3;Parent=MS.gene038546.t1 |
| chr8.4 | CDS | 37165821 | 37165980 | 37165821 | ID=cds.MS.gene038546.t1;Parent=MS.gene038546.t1 |
| chr8.4 | exon | 37165334 | 37165599 | 37165334 | ID=MS.gene038546.t1.exon4;Parent=MS.gene038546.t1 |
| chr8.4 | CDS | 37165334 | 37165599 | 37165334 | ID=cds.MS.gene038546.t1;Parent=MS.gene038546.t1 |
| Gene Sequence |
| Protein sequence |
