Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038548.t1 | XP_013445984.1 | 98 | 346 | 7 | 0 | 1 | 346 | 1 | 346 | 2.30E-181 | 644.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038548.t1 | Q9ZUC1 | 71.6 | 348 | 93 | 2 | 2 | 346 | 4 | 348 | 4.7e-127 | 455.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038548.t1 | A0A072TS46 | 98.0 | 346 | 7 | 0 | 1 | 346 | 1 | 346 | 1.6e-181 | 644.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032779 | MS.gene038548 | PPI |
| MS.gene038548 | MS.gene49595 | PPI |
| MS.gene066288 | MS.gene038548 | PPI |
| MS.gene99026 | MS.gene038548 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038548.t1 | MTR_8g064610 | 97.977 | 346 | 7 | 0 | 1 | 346 | 1 | 346 | 0.0 | 678 |
| MS.gene038548.t1 | MTR_7g034395 | 72.794 | 272 | 73 | 1 | 76 | 346 | 8 | 279 | 2.22e-124 | 360 |
| MS.gene038548.t1 | MTR_6g012170 | 68.841 | 276 | 85 | 1 | 72 | 346 | 7 | 282 | 2.35e-121 | 352 |
| MS.gene038548.t1 | MTR_6g012160 | 68.478 | 276 | 86 | 1 | 72 | 346 | 7 | 282 | 1.40e-119 | 347 |
| MS.gene038548.t1 | MTR_8g035630 | 46.324 | 272 | 141 | 4 | 77 | 346 | 5 | 273 | 1.07e-71 | 226 |
| MS.gene038548.t1 | MTR_8g035880 | 46.691 | 272 | 140 | 4 | 77 | 346 | 5 | 273 | 2.14e-71 | 226 |
| MS.gene038548.t1 | MTR_6g012140 | 61.538 | 104 | 40 | 0 | 243 | 346 | 3 | 106 | 5.56e-39 | 135 |
| MS.gene038548.t1 | MTR_1319s0010 | 66.304 | 92 | 31 | 0 | 137 | 228 | 3 | 94 | 7.10e-37 | 129 |
| MS.gene038548.t1 | MTR_4g033205 | 39.689 | 257 | 128 | 10 | 76 | 316 | 6 | 251 | 2.56e-35 | 131 |
| MS.gene038548.t1 | MTR_4g032995 | 39.689 | 257 | 128 | 10 | 76 | 316 | 6 | 251 | 2.99e-35 | 131 |
| MS.gene038548.t1 | MTR_4g036310 | 38.298 | 235 | 130 | 5 | 76 | 303 | 6 | 232 | 2.71e-33 | 126 |
| MS.gene038548.t1 | MTR_7g055743 | 34.413 | 247 | 128 | 6 | 70 | 299 | 39 | 268 | 5.90e-29 | 115 |
| MS.gene038548.t1 | MTR_2g078520 | 31.849 | 292 | 164 | 8 | 32 | 317 | 4 | 266 | 5.77e-28 | 112 |
| MS.gene038548.t1 | MTR_4g036260 | 37.436 | 195 | 102 | 4 | 134 | 316 | 44 | 230 | 1.86e-25 | 104 |
| MS.gene038548.t1 | MTR_2g012420 | 34.348 | 230 | 130 | 8 | 76 | 297 | 1 | 217 | 2.35e-23 | 99.0 |
| MS.gene038548.t1 | MTR_4g050760 | 33.913 | 230 | 131 | 8 | 76 | 297 | 1 | 217 | 1.53e-21 | 94.0 |
| MS.gene038548.t1 | MTR_2g012380 | 33.913 | 230 | 131 | 8 | 76 | 297 | 1 | 217 | 1.53e-21 | 94.0 |
| MS.gene038548.t1 | MTR_2g012380 | 33.913 | 230 | 131 | 8 | 76 | 297 | 1 | 217 | 1.67e-21 | 92.8 |
| MS.gene038548.t1 | MTR_4g029500 | 32.549 | 255 | 148 | 9 | 54 | 298 | 29 | 269 | 2.09e-17 | 82.8 |
| MS.gene038548.t1 | MTR_4g086400 | 31.731 | 208 | 118 | 7 | 101 | 297 | 174 | 368 | 4.99e-17 | 82.4 |
| MS.gene038548.t1 | MTR_4g086400 | 31.731 | 208 | 118 | 7 | 101 | 297 | 314 | 508 | 5.44e-17 | 82.4 |
| MS.gene038548.t1 | MTR_6g039950 | 52.308 | 65 | 30 | 1 | 72 | 135 | 15 | 79 | 1.07e-16 | 74.3 |
| MS.gene038548.t1 | MTR_4g086410 | 32.692 | 208 | 116 | 7 | 101 | 297 | 314 | 508 | 1.48e-16 | 81.3 |
| MS.gene038548.t1 | MTR_4g036170 | 33.728 | 169 | 92 | 4 | 134 | 296 | 46 | 200 | 7.61e-15 | 74.7 |
| MS.gene038548.t1 | MTR_3g093620 | 30.631 | 222 | 131 | 6 | 106 | 315 | 40 | 250 | 9.47e-12 | 65.9 |
| MS.gene038548.t1 | MTR_8g095220 | 35.294 | 153 | 80 | 8 | 177 | 315 | 195 | 342 | 3.31e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038548.t1 | AT1G23740 | 72.222 | 342 | 80 | 3 | 14 | 346 | 13 | 348 | 5.44e-166 | 468 |
| MS.gene038548.t1 | AT4G13010 | 36.614 | 254 | 140 | 6 | 76 | 316 | 6 | 251 | 1.32e-30 | 119 |
| MS.gene038548.t1 | AT3G15090 | 34.008 | 247 | 150 | 7 | 77 | 317 | 33 | 272 | 5.72e-29 | 115 |
| MS.gene038548.t1 | AT4G21580 | 33.624 | 229 | 133 | 7 | 76 | 297 | 1 | 217 | 7.78e-22 | 94.7 |
| MS.gene038548.t1 | AT4G21580 | 33.624 | 229 | 127 | 8 | 76 | 297 | 1 | 211 | 1.01e-20 | 91.7 |
| MS.gene038548.t1 | AT3G56460 | 31.602 | 231 | 134 | 7 | 98 | 315 | 32 | 251 | 1.03e-18 | 86.3 |
| MS.gene038548.t1 | AT5G61510 | 31.293 | 294 | 171 | 10 | 12 | 298 | 32 | 301 | 7.89e-18 | 84.3 |
| MS.gene038548.t1 | AT3G45770 | 28.205 | 312 | 195 | 10 | 41 | 338 | 11 | 307 | 2.69e-16 | 79.7 |
| MS.gene038548.t1 | AT1G49670 | 27.727 | 220 | 137 | 7 | 105 | 315 | 318 | 524 | 2.85e-15 | 77.4 |
| MS.gene038548.t1 | AT5G61510 | 33.180 | 217 | 126 | 8 | 89 | 298 | 40 | 244 | 3.09e-14 | 73.2 |
| MS.gene038548.t1 | AT1G49670 | 25.311 | 241 | 139 | 6 | 105 | 315 | 318 | 547 | 7.64e-14 | 73.2 |
Find 83 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCCACTCTCTAAATA+TGG | 0.138626 | 8.3:-37742821 | None:intergenic |
| GCCTAAACAATTTGGGTCTT+TGG | 0.239443 | 8.3:+37741797 | MS.gene038548:CDS |
| AAGAAGGCAGGGAAAGTTTA+AGG | 0.274790 | 8.3:+37741056 | MS.gene038548:CDS |
| TTAGATGGGCCTAAACAATT+TGG | 0.276099 | 8.3:+37741789 | MS.gene038548:CDS |
| ATTCTTGTTCTCAATGGTTC+TGG | 0.283840 | 8.3:+37741960 | MS.gene038548:CDS |
| ACCAAGGCATGCTAGATTCT+TGG | 0.306476 | 8.3:+37740834 | MS.gene038548:CDS |
| GCTTGGGTGTATGGAGAATA+TGG | 0.307432 | 8.3:+37740925 | MS.gene038548:CDS |
| GAAAAGTCTTGGAGCTGATT+TGG | 0.309843 | 8.3:+37742380 | MS.gene038548:CDS |
| GTTCCTGGCTATGATGTTGC+TGG | 0.312264 | 8.3:+37741687 | MS.gene038548:CDS |
| TGTGTCCATTAGACTGTTCC+TGG | 0.323261 | 8.3:+37741672 | MS.gene038548:intron |
| AGTTGGAAGCCTAGTGATTC+AGG | 0.332144 | 8.3:+37741986 | MS.gene038548:CDS |
| GGCACTAAAACCTACAAGTT+TGG | 0.343137 | 8.3:+37741851 | MS.gene038548:CDS |
| TGAGACTGCTTATGAAGGTT+TGG | 0.356657 | 8.3:+37741908 | MS.gene038548:CDS |
| TGAGCAAAGTCCAAACTTGT+AGG | 0.358488 | 8.3:-37741861 | None:intergenic |
| GGCTACGGATTCTCCGCTTC+CGG | 0.367463 | 8.3:+37741077 | MS.gene038548:CDS |
| CACTTCAAGCACTAGACATT+TGG | 0.377637 | 8.3:+37742350 | MS.gene038548:CDS |
| CAGAGCAGTGAAGGCAATAA+AGG | 0.383379 | 8.3:+37742703 | MS.gene038548:CDS |
| CCTTTCCACTCTCTAAATAT+GGG | 0.387466 | 8.3:-37742820 | None:intergenic |
| GAAATGAAGGCTTGGGTGTA+TGG | 0.398493 | 8.3:+37740916 | MS.gene038548:CDS |
| AAATCTATTCTTGTTCTCAA+TGG | 0.403553 | 8.3:+37741954 | MS.gene038548:CDS |
| TAGATGGGCCTAAACAATTT+GGG | 0.417483 | 8.3:+37741790 | MS.gene038548:CDS |
| GTGAATGAGAAAGCATTAGA+TGG | 0.420736 | 8.3:+37741774 | MS.gene038548:CDS |
| GGCAGTGTAGTAGCACTAAC+AGG | 0.429167 | 8.3:+37742731 | MS.gene038548:CDS |
| TCCTTCGGAAATGAAGGCTT+GGG | 0.433557 | 8.3:+37740909 | MS.gene038548:CDS |
| GCCAAAGACCCAAATTGTTT+AGG | 0.436010 | 8.3:-37741798 | None:intergenic |
| TTCCTGGCTATGATGTTGCT+GGG | 0.439986 | 8.3:+37741688 | MS.gene038548:CDS |
| ACAAGTTCCTTCGGAAATGA+AGG | 0.448707 | 8.3:+37740903 | MS.gene038548:CDS |
| TGTTGCTGTGCCTGATGTTA+AGG | 0.451705 | 8.3:+37740978 | MS.gene038548:CDS |
| TTTCTTCAAAACAGCTCCAT+TGG | 0.455443 | 8.3:-37742792 | None:intergenic |
| TTCCTTCGGAAATGAAGGCT+TGG | 0.458870 | 8.3:+37740908 | MS.gene038548:CDS |
| GCCTGATGTTAAGGAAGATC+AGG | 0.465613 | 8.3:+37740987 | MS.gene038548:CDS |
| CTCAATGGTTCTGGTGGAGT+TGG | 0.465977 | 8.3:+37741969 | MS.gene038548:CDS |
| AAGGAAAATCTGAGAGAAAG+TGG | 0.473230 | 8.3:-37740754 | None:intergenic |
| GCTGCTCTTAACCCTGTTGA+TGG | 0.476989 | 8.3:+37741030 | MS.gene038548:CDS |
| TGAAGGAAGTGAAGGAAGAA+TGG | 0.477949 | 8.3:-37740725 | None:intergenic |
| GCTATTGAGACTGCTTATGA+AGG | 0.483022 | 8.3:+37741903 | MS.gene038548:CDS |
| CTTGTTCTCAATGGTTCTGG+TGG | 0.485138 | 8.3:+37741963 | MS.gene038548:CDS |
| ACCTGATCTTCCTTAACATC+AGG | 0.488261 | 8.3:-37740988 | None:intergenic |
| AGAGAAAGTGGTGAAGATGA+AGG | 0.494341 | 8.3:-37740742 | None:intergenic |
| TTGGAGCTACTGAAAAGTCT+TGG | 0.497793 | 8.3:+37742369 | MS.gene038548:CDS |
| TATGAAGGTTTGGAGAGGAC+TGG | 0.503871 | 8.3:+37741918 | MS.gene038548:CDS |
| GAAGGTTGGCAGCGAAGTAA+AGG | 0.506684 | 8.3:+37741719 | MS.gene038548:CDS |
| AGCTGTTGAGGAGAAATTGT+TGG | 0.514874 | 8.3:+37741830 | MS.gene038548:CDS |
| AGATTTGTAGTGACTTCCAA+TGG | 0.518081 | 8.3:+37742776 | MS.gene038548:CDS |
| GCAGGGAAAGTTTAAGGCTA+CGG | 0.519335 | 8.3:+37741062 | MS.gene038548:CDS |
| GAAAGTGACACAAGTTCCTT+CGG | 0.521617 | 8.3:+37740894 | MS.gene038548:CDS |
| ACCAAGAATCTAGCATGCCT+TGG | 0.523278 | 8.3:-37740835 | None:intergenic |
| GGCTGAGTACACAGCTGTTG+AGG | 0.523349 | 8.3:+37741818 | MS.gene038548:CDS |
| TGTTGATGGTAAAAGAAGGC+AGG | 0.523502 | 8.3:+37741044 | MS.gene038548:CDS |
| AAAGTCGGCGATGAAGTGTA+TGG | 0.526704 | 8.3:+37741747 | MS.gene038548:CDS |
| GTCACTACAAATCTGAATCC+AGG | 0.545336 | 8.3:-37742767 | None:intergenic |
| GGTGAAGATGAAGGAAGTGA+AGG | 0.546247 | 8.3:-37740733 | None:intergenic |
| GATGTAGTTTATGATGCCAT+TGG | 0.546289 | 8.3:+37742450 | MS.gene038548:CDS |
| ACAGGAGCTGTTACACCACC+TGG | 0.561590 | 8.3:+37742749 | MS.gene038548:CDS |
| GAGTGAATAATCACCGGAAG+CGG | 0.565819 | 8.3:-37741090 | None:intergenic |
| ACCCCAGCAACATCATAGCC+AGG | 0.566870 | 8.3:-37741690 | None:intergenic |
| GCAATGTGACAGAGCAGTGA+AGG | 0.567763 | 8.3:+37742694 | MS.gene038548:CDS |
| AACATCAGGCACAGCAACAT+TGG | 0.570963 | 8.3:-37740974 | None:intergenic |
| AATGGTGAGGTGAGAAGTTG+TGG | 0.574018 | 8.3:-37740707 | None:intergenic |
| ACCCTGTTGATGGTAAAAGA+AGG | 0.577796 | 8.3:+37741040 | MS.gene038548:CDS |
| ATCTACTACTGCTTCATCTG+AGG | 0.581286 | 8.3:+37740867 | MS.gene038548:CDS |
| CTAAACCCATATTTAGAGAG+TGG | 0.581322 | 8.3:+37742815 | MS.gene038548:CDS |
| GAAGTAAAGGACTTCAAAGT+CGG | 0.582450 | 8.3:+37741732 | MS.gene038548:CDS |
| TAAGCAGTCTCAATAGCAAG+AGG | 0.589060 | 8.3:-37741897 | None:intergenic |
| TGAATGAGAAAGCATTAGAT+GGG | 0.597261 | 8.3:+37741775 | MS.gene038548:CDS |
| ACCCAAGCCTTCATTTCCGA+AGG | 0.600966 | 8.3:-37740910 | None:intergenic |
| GCTGGGGTCGTAGTGAAGGT+TGG | 0.602197 | 8.3:+37741705 | MS.gene038548:CDS |
| AGAACAAGAATAGATTTACC+AGG | 0.605332 | 8.3:-37741948 | None:intergenic |
| GTTGATGGTAAAAGAAGGCA+GGG | 0.608172 | 8.3:+37741045 | MS.gene038548:CDS |
| GGTGAGGTGAGAAGTTGTGG+TGG | 0.610962 | 8.3:-37740704 | None:intergenic |
| CTCTCTTGTCTTCTTCACCA+AGG | 0.628610 | 8.3:+37740818 | MS.gene038548:CDS |
| TGTTGCTGGGGTCGTAGTGA+AGG | 0.634534 | 8.3:+37741701 | MS.gene038548:CDS |
| TGGGTGTATGGAGAATATGG+AGG | 0.638579 | 8.3:+37740928 | MS.gene038548:CDS |
| GCAGTGAAGGCAATAAAGGA+AGG | 0.640198 | 8.3:+37742707 | MS.gene038548:CDS |
| CAAATGTCTAGTGCTTGAAG+TGG | 0.641907 | 8.3:-37742349 | None:intergenic |
| CTGCTTATGAAGGTTTGGAG+AGG | 0.648485 | 8.3:+37741913 | MS.gene038548:CDS |
| GTGAAGGCAATAAAGGAAGG+TGG | 0.652587 | 8.3:+37742710 | MS.gene038548:CDS |
| CCCATATTTAGAGAGTGGAA+AGG | 0.653180 | 8.3:+37742820 | MS.gene038548:CDS |
| GAGTAAATACCTGAATCACT+AGG | 0.653524 | 8.3:-37741995 | None:intergenic |
| TCCTGGCTATGATGTTGCTG+GGG | 0.668886 | 8.3:+37741689 | MS.gene038548:CDS |
| TTTGGCTATTGACTACACAA+AGG | 0.684942 | 8.3:+37742398 | MS.gene038548:CDS |
| GAAGTGAAGGAAGAATGGTG+AGG | 0.729256 | 8.3:-37740720 | None:intergenic |
| ACTACAAATCTGAATCCAGG+TGG | 0.755064 | 8.3:-37742764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTTCAAACAATT+TGG | + | chr8.3:37742521-37742540 | MS.gene038548:intron | 10.0% |
| !!! | GTGTATTTTATTAATTAGTT+TGG | - | chr8.3:37742591-37742610 | None:intergenic | 15.0% |
| !! | CAATTAAGTTTATGTATTCT+AGG | + | chr8.3:37741616-37741635 | MS.gene038548:intron | 20.0% |
| !! | TTAAAATTTCTTGTGCATAA+GGG | + | chr8.3:37742232-37742251 | MS.gene038548:intron | 20.0% |
| !!! | TAAACTACATCAAATTTTTC+TGG | - | chr8.3:37742441-37742460 | None:intergenic | 20.0% |
| !!! | TGAAATTTTTTATCGAAGAT+TGG | - | chr8.3:37742514-37742533 | None:intergenic | 20.0% |
| !!! | TGGTTATAATTTTGAGAAAA+TGG | - | chr8.3:37742095-37742114 | None:intergenic | 20.0% |
| !!! | TTAAGTACTGAAATCAAATT+TGG | + | chr8.3:37741644-37741663 | MS.gene038548:intron | 20.0% |
| !!! | TTACTTTTGCAAGAAAATTT+AGG | + | chr8.3:37741347-37741366 | MS.gene038548:intron | 20.0% |
| !!! | TTTAAAATTTCTTGTGCATA+AGG | + | chr8.3:37742231-37742250 | MS.gene038548:intron | 20.0% |
| ! | AAATCTATTCTTGTTCTCAA+TGG | + | chr8.3:37741954-37741973 | MS.gene038548:CDS | 25.0% |
| !! | GAAAAGAAGAATTTTACCAA+TGG | - | chr8.3:37742469-37742488 | None:intergenic | 25.0% |
| !!! | CAAGTTTTTTGGTTACTTTT+TGG | - | chr8.3:37740790-37740809 | None:intergenic | 25.0% |
| !!! | GTTTTTGTTTTTCTATGTTG+TGG | + | chr8.3:37741125-37741144 | MS.gene038548:intron | 25.0% |
| !!! | TGAAGATGATTTTAGAATTG+AGG | + | chr8.3:37741271-37741290 | MS.gene038548:intron | 25.0% |
| !!! | TTTTTTGGTTACTTTTTGGT+TGG | - | chr8.3:37740786-37740805 | None:intergenic | 25.0% |
| AAAAGAGAGTGAATAATCAC+CGG | - | chr8.3:37741099-37741118 | None:intergenic | 30.0% | |
| AAAAGTTCTTAGTCAGGTAA+AGG | - | chr8.3:37742192-37742211 | None:intergenic | 30.0% | |
| AAAGTTCTTAGTCAGGTAAA+GGG | - | chr8.3:37742191-37742210 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACACCTTA+TGG | - | chr8.3:37741498-37741517 | None:intergenic | 30.0% | |
| AGAACAAGAATAGATTTACC+AGG | - | chr8.3:37741951-37741970 | None:intergenic | 30.0% | |
| AGCAAAAGAAGAAAAGGTTA+TGG | + | chr8.3:37741209-37741228 | MS.gene038548:intron | 30.0% | |
| ATGATATTGACACATTGTGT+TGG | - | chr8.3:37742115-37742134 | None:intergenic | 30.0% | |
| CTACAATATTTCAGCATGAA+AGG | - | chr8.3:37742032-37742051 | None:intergenic | 30.0% | |
| ! | TTTTAGACGAAGTATGTTTC+TGG | + | chr8.3:37742208-37742227 | MS.gene038548:intron | 30.0% |
| !! | ACTGATTTTCAAAAACTCTC+TGG | - | chr8.3:37742547-37742566 | None:intergenic | 30.0% |
| !! | TGAATGAGAAAGCATTAGAT+GGG | + | chr8.3:37741775-37741794 | MS.gene038548:CDS | 30.0% |
| !!! | GAGTTTTGAGACAAGTTTTT+TGG | - | chr8.3:37740801-37740820 | None:intergenic | 30.0% |
| AAGACGCGTTTGTAGATTTA+AGG | + | chr8.3:37742636-37742655 | MS.gene038548:intron | 35.0% | |
| AAGGAAAATCTGAGAGAAAG+TGG | - | chr8.3:37740757-37740776 | None:intergenic | 35.0% | |
| AGATTTGTAGTGACTTCCAA+TGG | + | chr8.3:37742776-37742795 | MS.gene038548:CDS | 35.0% | |
| AGTTTATAGACCAAAACGTG+AGG | + | chr8.3:37742564-37742583 | MS.gene038548:intron | 35.0% | |
| ATTCTTGTTCTCAATGGTTC+TGG | + | chr8.3:37741960-37741979 | MS.gene038548:CDS | 35.0% | |
| CAATGTGTCAATATCATGTC+CGG | + | chr8.3:37742118-37742137 | MS.gene038548:intron | 35.0% | |
| CCAAACTAACATCCTTTACT+TGG | + | chr8.3:37742660-37742679 | MS.gene038548:intron | 35.0% | |
| CCAAGTAAAGGATGTTAGTT+TGG | - | chr8.3:37742663-37742682 | None:intergenic | 35.0% | |
| CTAAACCCATATTTAGAGAG+TGG | + | chr8.3:37742815-37742834 | MS.gene038548:CDS | 35.0% | |
| GAAGTAAAGGACTTCAAAGT+CGG | + | chr8.3:37741732-37741751 | MS.gene038548:CDS | 35.0% | |
| GAGTAAATACCTGAATCACT+AGG | - | chr8.3:37741998-37742017 | None:intergenic | 35.0% | |
| GATGTAGTTTATGATGCCAT+TGG | + | chr8.3:37742450-37742469 | MS.gene038548:CDS | 35.0% | |
| GCTTCTAGCAAAAGAAGAAA+AGG | + | chr8.3:37741203-37741222 | MS.gene038548:intron | 35.0% | |
| GGATTCAATAGCTATGATAG+TGG | + | chr8.3:37741230-37741249 | MS.gene038548:intron | 35.0% | |
| TAGATGGGCCTAAACAATTT+GGG | + | chr8.3:37741790-37741809 | MS.gene038548:CDS | 35.0% | |
| TCGCTAATTACATGTCCATA+AGG | + | chr8.3:37741480-37741499 | MS.gene038548:intron | 35.0% | |
| TCGTCTAAAAGTTCTTAGTC+AGG | - | chr8.3:37742198-37742217 | None:intergenic | 35.0% | |
| TGGAATCTGTGTGAAGATAT+TGG | + | chr8.3:37741313-37741332 | MS.gene038548:intron | 35.0% | |
| TTAGATGGGCCTAAACAATT+TGG | + | chr8.3:37741789-37741808 | MS.gene038548:CDS | 35.0% | |
| TTTCTTCAAAACAGCTCCAT+TGG | - | chr8.3:37742795-37742814 | None:intergenic | 35.0% | |
| ! | AGGTGTTTTCAGCTTATTTC+TGG | + | chr8.3:37741500-37741519 | MS.gene038548:intron | 35.0% |
| ! | CAGCTAGCTAAACAAGTTTT+TGG | + | chr8.3:37742309-37742328 | MS.gene038548:intron | 35.0% |
| ! | TTTGGCTATTGACTACACAA+AGG | + | chr8.3:37742398-37742417 | MS.gene038548:CDS | 35.0% |
| !! | GTGAATGAGAAAGCATTAGA+TGG | + | chr8.3:37741774-37741793 | MS.gene038548:CDS | 35.0% |
| !!! | ACTTTTTGGTTGGAAAGTGA+AGG | - | chr8.3:37740776-37740795 | None:intergenic | 35.0% |
| AAGAAGGCAGGGAAAGTTTA+AGG | + | chr8.3:37741056-37741075 | MS.gene038548:CDS | 40.0% | |
| ACAAGTTCCTTCGGAAATGA+AGG | + | chr8.3:37740903-37740922 | MS.gene038548:CDS | 40.0% | |
| ACACAGATTCCACCCAATTT+CGG | - | chr8.3:37741305-37741324 | None:intergenic | 40.0% | |
| ACCTGATCTTCCTTAACATC+AGG | - | chr8.3:37740991-37741010 | None:intergenic | 40.0% | |
| ACTACAAATCTGAATCCAGG+TGG | - | chr8.3:37742767-37742786 | None:intergenic | 40.0% | |
| AGAGAAAGTGGTGAAGATGA+AGG | - | chr8.3:37740745-37740764 | None:intergenic | 40.0% | |
| AGCTAGCTGCAAGTCATTAA+AGG | - | chr8.3:37742298-37742317 | None:intergenic | 40.0% | |
| AGCTGTTGAGGAGAAATTGT+TGG | + | chr8.3:37741830-37741849 | MS.gene038548:CDS | 40.0% | |
| ATCTACTACTGCTTCATCTG+AGG | + | chr8.3:37740867-37740886 | MS.gene038548:CDS | 40.0% | |
| CAAATGTCTAGTGCTTGAAG+TGG | - | chr8.3:37742352-37742371 | None:intergenic | 40.0% | |
| CACTTCAAGCACTAGACATT+TGG | + | chr8.3:37742350-37742369 | MS.gene038548:CDS | 40.0% | |
| CATGTAATCATCACATGCGT+CGG | - | chr8.3:37742063-37742082 | None:intergenic | 40.0% | |
| CATGTACTTGTGAGACTGTT+TGG | + | chr8.3:37741442-37741461 | MS.gene038548:intron | 40.0% | |
| GAAAAGTCTTGGAGCTGATT+TGG | + | chr8.3:37742380-37742399 | MS.gene038548:CDS | 40.0% | |
| GAAAGTGACACAAGTTCCTT+CGG | + | chr8.3:37740894-37740913 | MS.gene038548:CDS | 40.0% | |
| GAGGAAAGCTTACCGAAATT+GGG | + | chr8.3:37741290-37741309 | MS.gene038548:intron | 40.0% | |
| GCCAAAGACCCAAATTGTTT+AGG | - | chr8.3:37741801-37741820 | None:intergenic | 40.0% | |
| GCCTAAACAATTTGGGTCTT+TGG | + | chr8.3:37741797-37741816 | MS.gene038548:CDS | 40.0% | |
| GCTATTGAGACTGCTTATGA+AGG | + | chr8.3:37741903-37741922 | MS.gene038548:CDS | 40.0% | |
| GCTGCAAGTCATTAAAGGTA+TGG | - | chr8.3:37742293-37742312 | None:intergenic | 40.0% | |
| GGCACTAAAACCTACAAGTT+TGG | + | chr8.3:37741851-37741870 | MS.gene038548:CDS | 40.0% | |
| GTCACTACAAATCTGAATCC+AGG | - | chr8.3:37742770-37742789 | None:intergenic | 40.0% | |
| GTTATTGCTCTATGAAGCAC+AGG | - | chr8.3:37742152-37742171 | None:intergenic | 40.0% | |
| TAAGCAGTCTCAATAGCAAG+AGG | - | chr8.3:37741900-37741919 | None:intergenic | 40.0% | |
| TGAAGGAAGTGAAGGAAGAA+TGG | - | chr8.3:37740728-37740747 | None:intergenic | 40.0% | |
| TGAGACTGCTTATGAAGGTT+TGG | + | chr8.3:37741908-37741927 | MS.gene038548:CDS | 40.0% | |
| TGAGCAAAGTCCAAACTTGT+AGG | - | chr8.3:37741864-37741883 | None:intergenic | 40.0% | |
| TGAGGAAAGCTTACCGAAAT+TGG | + | chr8.3:37741289-37741308 | MS.gene038548:intron | 40.0% | |
| TTGGAGCTACTGAAAAGTCT+TGG | + | chr8.3:37742369-37742388 | MS.gene038548:CDS | 40.0% | |
| ! | CCTTTACTTGGTGATTTGCA+GGG | + | chr8.3:37742672-37742691 | MS.gene038548:intron | 40.0% |
| ! | GCCTTCTTTTACCATCAACA+GGG | - | chr8.3:37741044-37741063 | None:intergenic | 40.0% |
| ! | TCCTTTACTTGGTGATTTGC+AGG | + | chr8.3:37742671-37742690 | MS.gene038548:intron | 40.0% |
| ! | TGCCTTCTTTTACCATCAAC+AGG | - | chr8.3:37741045-37741064 | None:intergenic | 40.0% |
| !! | ACCCTGTTGATGGTAAAAGA+AGG | + | chr8.3:37741040-37741059 | MS.gene038548:CDS | 40.0% |
| !! | GTTGATGGTAAAAGAAGGCA+GGG | + | chr8.3:37741045-37741064 | MS.gene038548:CDS | 40.0% |
| !! | TGTTGATGGTAAAAGAAGGC+AGG | + | chr8.3:37741044-37741063 | MS.gene038548:CDS | 40.0% |
| !! | TTAGTTTGGTCCTCACGTTT+TGG | - | chr8.3:37742577-37742596 | None:intergenic | 40.0% |
| AAAGTCGGCGATGAAGTGTA+TGG | + | chr8.3:37741747-37741766 | MS.gene038548:CDS | 45.0% | |
| AACATCAGGCACAGCAACAT+TGG | - | chr8.3:37740977-37740996 | None:intergenic | 45.0% | |
| AATGGTGAGGTGAGAAGTTG+TGG | - | chr8.3:37740710-37740729 | None:intergenic | 45.0% | |
| ACCAAGAATCTAGCATGCCT+TGG | - | chr8.3:37740838-37740857 | None:intergenic | 45.0% | |
| ACCAAGGCATGCTAGATTCT+TGG | + | chr8.3:37740834-37740853 | MS.gene038548:CDS | 45.0% | |
| AGTTGGAAGCCTAGTGATTC+AGG | + | chr8.3:37741986-37742005 | MS.gene038548:CDS | 45.0% | |
| CAGAGCAGTGAAGGCAATAA+AGG | + | chr8.3:37742703-37742722 | MS.gene038548:CDS | 45.0% | |
| CATAGCCAGGAACAGTCTAA+TGG | - | chr8.3:37741680-37741699 | None:intergenic | 45.0% | |
| CCCTGCAAATCACCAAGTAA+AGG | - | chr8.3:37742675-37742694 | None:intergenic | 45.0% | |
| CTCTCTTGTCTTCTTCACCA+AGG | + | chr8.3:37740818-37740837 | MS.gene038548:CDS | 45.0% | |
| CTGCTTATGAAGGTTTGGAG+AGG | + | chr8.3:37741913-37741932 | MS.gene038548:CDS | 45.0% | |
| GAAAGCTTACCGAAATTGGG+TGG | + | chr8.3:37741293-37741312 | MS.gene038548:intron | 45.0% | |
| GAAATGAAGGCTTGGGTGTA+TGG | + | chr8.3:37740916-37740935 | MS.gene038548:CDS | 45.0% | |
| GAAGTGAAGGAAGAATGGTG+AGG | - | chr8.3:37740723-37740742 | None:intergenic | 45.0% | |
| GAGTGAATAATCACCGGAAG+CGG | - | chr8.3:37741093-37741112 | None:intergenic | 45.0% | |
| GCAGTGAAGGCAATAAAGGA+AGG | + | chr8.3:37742707-37742726 | MS.gene038548:CDS | 45.0% | |
| GCCTGATGTTAAGGAAGATC+AGG | + | chr8.3:37740987-37741006 | MS.gene038548:CDS | 45.0% | |
| GCTTGGGTGTATGGAGAATA+TGG | + | chr8.3:37740925-37740944 | MS.gene038548:CDS | 45.0% | |
| GGTGAAGATGAAGGAAGTGA+AGG | - | chr8.3:37740736-37740755 | None:intergenic | 45.0% | |
| GTGAAGGCAATAAAGGAAGG+TGG | + | chr8.3:37742710-37742729 | MS.gene038548:CDS | 45.0% | |
| TATGAAGGTTTGGAGAGGAC+TGG | + | chr8.3:37741918-37741937 | MS.gene038548:CDS | 45.0% | |
| TCCTTCGGAAATGAAGGCTT+GGG | + | chr8.3:37740909-37740928 | MS.gene038548:CDS | 45.0% | |
| TGGGTGTATGGAGAATATGG+AGG | + | chr8.3:37740928-37740947 | MS.gene038548:CDS | 45.0% | |
| TGTGTCCATTAGACTGTTCC+TGG | + | chr8.3:37741672-37741691 | MS.gene038548:intron | 45.0% | |
| TGTTGCTGTGCCTGATGTTA+AGG | + | chr8.3:37740978-37740997 | MS.gene038548:CDS | 45.0% | |
| TTCCTGGCTATGATGTTGCT+GGG | + | chr8.3:37741688-37741707 | MS.gene038548:CDS | 45.0% | |
| TTCCTTCGGAAATGAAGGCT+TGG | + | chr8.3:37740908-37740927 | MS.gene038548:CDS | 45.0% | |
| ! | GCAGGGAAAGTTTAAGGCTA+CGG | + | chr8.3:37741062-37741081 | MS.gene038548:CDS | 45.0% |
| !! | CTTGTTCTCAATGGTTCTGG+TGG | + | chr8.3:37741963-37741982 | MS.gene038548:CDS | 45.0% |
| ACCCAAGCCTTCATTTCCGA+AGG | - | chr8.3:37740913-37740932 | None:intergenic | 50.0% | |
| GAAGGTTGGCAGCGAAGTAA+AGG | + | chr8.3:37741719-37741738 | MS.gene038548:CDS | 50.0% | |
| GCAATGTGACAGAGCAGTGA+AGG | + | chr8.3:37742694-37742713 | MS.gene038548:CDS | 50.0% | |
| GCTGCTCTTAACCCTGTTGA+TGG | + | chr8.3:37741030-37741049 | MS.gene038548:CDS | 50.0% | |
| GGCAGTGTAGTAGCACTAAC+AGG | + | chr8.3:37742731-37742750 | MS.gene038548:CDS | 50.0% | |
| GTTCCTGGCTATGATGTTGC+TGG | + | chr8.3:37741687-37741706 | MS.gene038548:CDS | 50.0% | |
| TCCTGGCTATGATGTTGCTG+GGG | + | chr8.3:37741689-37741708 | MS.gene038548:CDS | 50.0% | |
| ! | GAGAGGACTGGATTTTCTCC+TGG | + | chr8.3:37741930-37741949 | MS.gene038548:CDS | 50.0% |
| !! | CTCAATGGTTCTGGTGGAGT+TGG | + | chr8.3:37741969-37741988 | MS.gene038548:CDS | 50.0% |
| ACAGGAGCTGTTACACCACC+TGG | + | chr8.3:37742749-37742768 | MS.gene038548:CDS | 55.0% | |
| ACCCCAGCAACATCATAGCC+AGG | - | chr8.3:37741693-37741712 | None:intergenic | 55.0% | |
| GGCTGAGTACACAGCTGTTG+AGG | + | chr8.3:37741818-37741837 | MS.gene038548:CDS | 55.0% | |
| GGTGAGGTGAGAAGTTGTGG+TGG | - | chr8.3:37740707-37740726 | None:intergenic | 55.0% | |
| TGAAGCACAGGCACAGACAC+CGG | - | chr8.3:37742140-37742159 | None:intergenic | 55.0% | |
| TGTTGCTGGGGTCGTAGTGA+AGG | + | chr8.3:37741701-37741720 | MS.gene038548:CDS | 55.0% | |
| GCTGGGGTCGTAGTGAAGGT+TGG | + | chr8.3:37741705-37741724 | MS.gene038548:CDS | 60.0% | |
| GGCTACGGATTCTCCGCTTC+CGG | + | chr8.3:37741077-37741096 | MS.gene038548:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 37740694 | 37742841 | 37740694 | ID=MS.gene038548 |
| chr8.3 | mRNA | 37740694 | 37742841 | 37740694 | ID=MS.gene038548.t1;Parent=MS.gene038548 |
| chr8.3 | exon | 37740694 | 37741098 | 37740694 | ID=MS.gene038548.t1.exon1;Parent=MS.gene038548.t1 |
| chr8.3 | CDS | 37740694 | 37741098 | 37740694 | ID=cds.MS.gene038548.t1;Parent=MS.gene038548.t1 |
| chr8.3 | exon | 37741684 | 37742007 | 37741684 | ID=MS.gene038548.t1.exon2;Parent=MS.gene038548.t1 |
| chr8.3 | CDS | 37741684 | 37742007 | 37741684 | ID=cds.MS.gene038548.t1;Parent=MS.gene038548.t1 |
| chr8.3 | exon | 37742312 | 37742471 | 37742312 | ID=MS.gene038548.t1.exon3;Parent=MS.gene038548.t1 |
| chr8.3 | CDS | 37742312 | 37742471 | 37742312 | ID=cds.MS.gene038548.t1;Parent=MS.gene038548.t1 |
| chr8.3 | exon | 37742693 | 37742841 | 37742693 | ID=MS.gene038548.t1.exon4;Parent=MS.gene038548.t1 |
| chr8.3 | CDS | 37742693 | 37742841 | 37742693 | ID=cds.MS.gene038548.t1;Parent=MS.gene038548.t1 |
| Gene Sequence |
| Protein sequence |
