Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038980.t1 | XP_013464200.1 | 99.5 | 215 | 1 | 0 | 1 | 215 | 1 | 215 | 2.80E-121 | 444.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038980.t1 | Q8BZJ7 | 40.9 | 220 | 122 | 3 | 1 | 213 | 1 | 219 | 3.3e-46 | 186.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038980.t1 | A0A072VJB0 | 99.5 | 215 | 1 | 0 | 1 | 215 | 1 | 215 | 2.0e-121 | 444.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene038980 | MS.gene38292 | PPI |
MS.gene053130 | MS.gene038980 | PPI |
MS.gene038980 | MS.gene053131 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038980.t1 | MTR_2g064415 | 99.535 | 215 | 1 | 0 | 1 | 215 | 1 | 215 | 1.68e-162 | 449 |
MS.gene038980.t1 | MTR_4g116980 | 29.375 | 160 | 111 | 2 | 58 | 215 | 36 | 195 | 4.82e-21 | 87.8 |
MS.gene038980.t1 | MTR_4g008540 | 24.719 | 178 | 132 | 2 | 39 | 214 | 17 | 194 | 1.99e-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038980.t1 | AT3G12760 | 75.926 | 216 | 51 | 1 | 1 | 215 | 1 | 216 | 3.75e-125 | 354 |
MS.gene038980.t1 | AT1G15860 | 26.705 | 176 | 127 | 2 | 42 | 215 | 20 | 195 | 6.52e-20 | 84.7 |
MS.gene038980.t1 | AT1G15860 | 26.705 | 176 | 127 | 2 | 42 | 215 | 20 | 195 | 6.52e-20 | 84.7 |
MS.gene038980.t1 | AT1G15860 | 26.486 | 185 | 125 | 3 | 42 | 215 | 20 | 204 | 8.41e-18 | 79.3 |
Find 48 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTGAAGGCTTACAATCTT+TGG | 0.213937 | 2.4:-28635387 | MS.gene038980:CDS |
ATTCTTTGTGCAGCATAAAT+TGG | 0.217465 | 2.4:-28642014 | MS.gene038980:intron |
GGATACATGGTCTCAGCTTT+TGG | 0.269497 | 2.4:-28633965 | MS.gene038980:CDS |
CTGGCTTTGGATACAGCTAT+TGG | 0.290596 | 2.4:-28634189 | MS.gene038980:CDS |
ATTGAAGGCTTACAATCTTT+GGG | 0.290934 | 2.4:-28635386 | MS.gene038980:CDS |
GAGATATATAACTTTGCTTT+TGG | 0.322910 | 2.4:-28635069 | MS.gene038980:CDS |
CAGCAGTTCGTAACGATAAC+TGG | 0.329636 | 2.4:-28641968 | MS.gene038980:CDS |
TTATTGCAGGATTGATTCTC+TGG | 0.338350 | 2.4:-28635288 | MS.gene038980:intron |
GGCTTATTACCTGCAAGAAT+TGG | 0.342538 | 2.4:+28634112 | None:intergenic |
TTCTTTGTGCAGCATAAATT+GGG | 0.361871 | 2.4:-28642013 | MS.gene038980:intron |
TTCAGCTCAGAGCGCATATA+TGG | 0.364877 | 2.4:+28635245 | None:intergenic |
GAGCTATACAATAGATATAA+AGG | 0.381421 | 2.4:-28640849 | MS.gene038980:intron |
GGCATAACAAAGCAATATCT+AGG | 0.382983 | 2.4:-28633987 | MS.gene038980:CDS |
ACATTGGTGCCAATTCTTGC+AGG | 0.391466 | 2.4:-28634121 | MS.gene038980:intron |
TGGCTTTGGATACAGCTATT+GGG | 0.410722 | 2.4:-28634188 | MS.gene038980:CDS |
TGCTGAGAAGCAGTGGCCTC+TGG | 0.419876 | 2.4:-28634148 | MS.gene038980:CDS |
CAGCGAGAAAGTGGCAATGC+AGG | 0.455285 | 2.4:-28640967 | MS.gene038980:CDS |
CCTCCTTTGCAATGATATCC+AGG | 0.475584 | 2.4:-28639033 | MS.gene038980:intron |
CTTTCATGGCACATGAAGGC+TGG | 0.477640 | 2.4:-28635440 | MS.gene038980:CDS |
TAAATTGGGGAGAGGTCATC+GGG | 0.477715 | 2.4:-28641999 | MS.gene038980:CDS |
CAGTTATCGTTACGAACTGC+TGG | 0.487867 | 2.4:+28641969 | None:intergenic |
GCTAGTGATTGGAATCTTGA+AGG | 0.498024 | 2.4:-28640936 | MS.gene038980:CDS |
AGTGGCAATGCAGGCTCTGA+AGG | 0.498625 | 2.4:-28640958 | MS.gene038980:CDS |
CTTCACTGATACTAGGCACT+TGG | 0.508982 | 2.4:-28640874 | MS.gene038980:CDS |
CACTGATACTAGGCACTTGG+AGG | 0.516875 | 2.4:-28640871 | MS.gene038980:CDS |
AGGCTCTGAAGGCTAGTGAT+TGG | 0.526944 | 2.4:-28640947 | MS.gene038980:CDS |
TTAGAACCTTCACTGATACT+AGG | 0.536113 | 2.4:-28640881 | MS.gene038980:CDS |
TGAAGGTTCTAAGCTGAGGC+TGG | 0.538587 | 2.4:+28640892 | None:intergenic |
ATAAATTGGGGAGAGGTCAT+CGG | 0.545004 | 2.4:-28642000 | MS.gene038980:CDS |
AGTTCTTTCATGGCACATGA+AGG | 0.546918 | 2.4:-28635444 | MS.gene038980:CDS |
TGGATACAGCTATTGGGATG+TGG | 0.552347 | 2.4:-28634182 | MS.gene038980:CDS |
TTGAAGGCTTACAATCTTTG+GGG | 0.561512 | 2.4:-28635385 | MS.gene038980:intron |
AAGCAATATCTAGGGATACA+TGG | 0.569704 | 2.4:-28633978 | MS.gene038980:CDS |
TATTATTTGCTGAGAAGCAG+TGG | 0.570737 | 2.4:-28634155 | MS.gene038980:CDS |
GTGCAGCATAAATTGGGGAG+AGG | 0.579013 | 2.4:-28642007 | MS.gene038980:intron |
GCATAACAAAGCAATATCTA+GGG | 0.579769 | 2.4:-28633986 | MS.gene038980:CDS |
CATACCATTACTATGTCTTG+AGG | 0.583443 | 2.4:+28636533 | None:intergenic |
ATTGATATGATTTATGCAGA+CGG | 0.595709 | 2.4:-28639062 | MS.gene038980:CDS |
CCTGGATATCATTGCAAAGG+AGG | 0.603718 | 2.4:+28639033 | None:intergenic |
TCTTTGTGCAGCATAAATTG+GGG | 0.617535 | 2.4:-28642012 | MS.gene038980:intron |
CTGGATATCATTGCAAAGGA+GGG | 0.626647 | 2.4:+28639034 | None:intergenic |
CAACCTGGATATCATTGCAA+AGG | 0.631060 | 2.4:+28639030 | None:intergenic |
GGATCCTCAAGACATAGTAA+TGG | 0.646312 | 2.4:-28636537 | MS.gene038980:intron |
CAAGTGCCTAGTATCAGTGA+AGG | 0.648036 | 2.4:+28640875 | None:intergenic |
TCAGTGAAGGTTCTAAGCTG+AGG | 0.649173 | 2.4:+28640888 | None:intergenic |
AGTGGCCTCTGGTTGAACAT+TGG | 0.651904 | 2.4:-28634137 | MS.gene038980:CDS |
TGGCACCAATGTTCAACCAG+AGG | 0.679329 | 2.4:+28634132 | None:intergenic |
TCGTAACGATAACTGGAGCG+AGG | 0.712120 | 2.4:-28641961 | MS.gene038980:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 28633954 | 28642870 | 28633954 | ID=MS.gene038980 |
chr2.4 | mRNA | 28633954 | 28642870 | 28633954 | ID=MS.gene038980.t1;Parent=MS.gene038980 |
chr2.4 | exon | 28642868 | 28642870 | 28642868 | ID=MS.gene038980.t1.exon1;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28642868 | 28642870 | 28642868 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28641962 | 28642023 | 28641962 | ID=MS.gene038980.t1.exon2;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28641962 | 28642023 | 28641962 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28640850 | 28640986 | 28640850 | ID=MS.gene038980.t1.exon3;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28640850 | 28640986 | 28640850 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28639034 | 28639092 | 28639034 | ID=MS.gene038980.t1.exon4;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28639034 | 28639092 | 28639034 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28636538 | 28636561 | 28636538 | ID=MS.gene038980.t1.exon5;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28636538 | 28636561 | 28636538 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28635386 | 28635468 | 28635386 | ID=MS.gene038980.t1.exon6;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28635386 | 28635468 | 28635386 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28635237 | 28635301 | 28635237 | ID=MS.gene038980.t1.exon7;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28635237 | 28635301 | 28635237 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28635053 | 28635102 | 28635053 | ID=MS.gene038980.t1.exon8;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28635053 | 28635102 | 28635053 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28634122 | 28634223 | 28634122 | ID=MS.gene038980.t1.exon9;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28634122 | 28634223 | 28634122 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
chr2.4 | exon | 28633954 | 28634013 | 28633954 | ID=MS.gene038980.t1.exon10;Parent=MS.gene038980.t1 |
chr2.4 | CDS | 28633954 | 28634013 | 28633954 | ID=cds.MS.gene038980.t1;Parent=MS.gene038980.t1 |
Gene Sequence |
Protein sequence |