Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053130.t1 | XP_013454609.1 | 97 | 201 | 1 | 1 | 1 | 201 | 1 | 196 | 9.30E-103 | 382.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053130.t1 | Q9CXV9 | 37.3 | 153 | 92 | 4 | 46 | 198 | 55 | 203 | 5.1e-25 | 115.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053130.t1 | B7FLH3 | 97.0 | 201 | 1 | 1 | 1 | 201 | 1 | 196 | 6.7e-103 | 382.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053130 | MS.gene045729 | PPI |
| MS.gene053130 | MS.gene62501 | PPI |
| MS.gene053130 | MS.gene045728 | PPI |
| MS.gene053130 | MS.gene038980 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053130.t1 | MTR_4g008540 | 97.015 | 201 | 1 | 1 | 1 | 201 | 1 | 196 | 5.60e-143 | 397 |
| MS.gene053130.t1 | MTR_4g116980 | 59.140 | 186 | 76 | 0 | 16 | 201 | 11 | 196 | 1.34e-80 | 239 |
| MS.gene053130.t1 | MTR_2g064415 | 25.157 | 159 | 117 | 2 | 41 | 199 | 58 | 214 | 4.37e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053130.t1 | AT1G15860 | 72.139 | 201 | 51 | 1 | 1 | 201 | 1 | 196 | 1.65e-104 | 300 |
| MS.gene053130.t1 | AT1G15860 | 72.139 | 201 | 51 | 1 | 1 | 201 | 1 | 196 | 1.65e-104 | 300 |
| MS.gene053130.t1 | AT1G15860 | 69.048 | 210 | 51 | 2 | 1 | 201 | 1 | 205 | 1.40e-101 | 293 |
| MS.gene053130.t1 | AT3G12760 | 28.022 | 182 | 125 | 3 | 17 | 198 | 39 | 214 | 1.24e-21 | 89.4 |
Find 44 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATTACTTTCTCTTGTTT+TGG | 0.145418 | 4.1:+86880847 | MS.gene053130:CDS |
| CAAAGTGCTTCAATTCCTTC+TGG | 0.257324 | 4.1:-86879611 | None:intergenic |
| GTTTACCGGTTAGACAATAT+TGG | 0.279270 | 4.1:-86880695 | None:intergenic |
| TCATATGCCAATGGATCTTC+CGG | 0.288578 | 4.1:+86878183 | MS.gene053130:CDS |
| TGAAGCACTTTGTGCTGATA+TGG | 0.334505 | 4.1:+86879622 | MS.gene053130:CDS |
| AGCTCAAGTCAGCTTATTTG+TGG | 0.374125 | 4.1:+86880883 | MS.gene053130:CDS |
| AGCGGCGGAGGGATTGGAAT+TGG | 0.380329 | 4.1:-86877236 | None:intergenic |
| GCTTTCCAATATTGTCTAAC+CGG | 0.393111 | 4.1:+86880690 | MS.gene053130:CDS |
| GAGATCAGCGGCGGAGGGAT+TGG | 0.395969 | 4.1:-86877242 | None:intergenic |
| ACAAATAAGCTGACTTGAGC+TGG | 0.417133 | 4.1:-86880881 | None:intergenic |
| CTTATTTGTGGAATATTTGA+AGG | 0.426551 | 4.1:+86880895 | MS.gene053130:CDS |
| AAAGTGCTTCAATTCCTTCT+GGG | 0.431600 | 4.1:-86879610 | None:intergenic |
| TGTTTACCTCGTTGCAAAAC+CGG | 0.432049 | 4.1:-86881074 | None:intergenic |
| TAAAGCAAACTCAAAGGAAC+TGG | 0.445115 | 4.1:+86878137 | MS.gene053130:CDS |
| CATATGCCAATGGATCTTCC+GGG | 0.450278 | 4.1:+86878184 | MS.gene053130:CDS |
| CGCGCTGCTTCAAAGAAAAC+GGG | 0.451962 | 4.1:+86877208 | MS.gene053130:CDS |
| ACGCGCTGCTTCAAAGAAAA+CGG | 0.452661 | 4.1:+86877207 | MS.gene053130:CDS |
| GCGGAAGAGATCAGCGGCGG+AGG | 0.456585 | 4.1:-86877248 | None:intergenic |
| CGTAAACATGGATCAGTGGA+TGG | 0.509518 | 4.1:+86881044 | MS.gene053130:CDS |
| AGGTGGATCATACTGATTTG+AGG | 0.520944 | 4.1:+86879645 | MS.gene053130:CDS |
| GGAGAGGCTTAAAAGCACTA+AGG | 0.525006 | 4.1:+86880472 | MS.gene053130:CDS |
| GCCGCTGATCTCTTCCGCTC+CGG | 0.527671 | 4.1:+86877253 | MS.gene053130:CDS |
| TACAGTAAGTAAATTGAAGA+AGG | 0.531444 | 4.1:+86880500 | MS.gene053130:CDS |
| AATCAACCCGGAAGATCCAT+TGG | 0.540430 | 4.1:-86878190 | None:intergenic |
| GGCACTACCAGACCTAGAAA+AGG | 0.541569 | 4.1:+86880521 | MS.gene053130:CDS |
| CGGAAGAGATCAGCGGCGGA+GGG | 0.545212 | 4.1:-86877247 | None:intergenic |
| TGATTACAAGGTCGTAAACA+TGG | 0.566445 | 4.1:+86881032 | MS.gene053130:CDS |
| TTAACAGAATCGAAGAGTAC+CGG | 0.594415 | 4.1:-86877272 | None:intergenic |
| GAGAGGCTTAAAAGCACTAA+GGG | 0.601499 | 4.1:+86880473 | MS.gene053130:CDS |
| TCAGAATCAAAATGATTACA+AGG | 0.602312 | 4.1:+86881020 | MS.gene053130:intron |
| GTAAACATGGATCAGTGGAT+GGG | 0.607934 | 4.1:+86881045 | MS.gene053130:CDS |
| TAACAGGAAAATGAAATCTG+AGG | 0.620467 | 4.1:+86879761 | MS.gene053130:intron |
| TTATAGGACGAGTGGAGGAG+AGG | 0.626288 | 4.1:+86880456 | MS.gene053130:intron |
| TTCGAGTAAAGCAAACTCAA+AGG | 0.628781 | 4.1:+86878131 | MS.gene053130:CDS |
| CATCTAATGTGAAGGTCCGG+AGG | 0.636647 | 4.1:+86880637 | MS.gene053130:intron |
| AGCACTTTGTGCTGATATGG+AGG | 0.645819 | 4.1:+86879625 | MS.gene053130:CDS |
| AGGTCGTAAACATGGATCAG+TGG | 0.649284 | 4.1:+86881040 | MS.gene053130:CDS |
| AAAATGAAATCTGAGGAGCA+AGG | 0.670608 | 4.1:+86879768 | MS.gene053130:CDS |
| ACTACCAGACCTAGAAAAGG+AGG | 0.671613 | 4.1:+86880524 | MS.gene053130:CDS |
| GGAGCGGAAGAGATCAGCGG+CGG | 0.679365 | 4.1:-86877251 | None:intergenic |
| ACTTTGTGCTGATATGGAGG+TGG | 0.689902 | 4.1:+86879628 | MS.gene053130:CDS |
| ACCGGAGCGGAAGAGATCAG+CGG | 0.704839 | 4.1:-86877254 | None:intergenic |
| GCAAACTTACTCAATCAACC+CGG | 0.731622 | 4.1:-86878202 | None:intergenic |
| AGAATCGAAGAGTACCGGAG+CGG | 0.764423 | 4.1:-86877267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTGAATGAAAAAAA+AGG | - | chr4.1:86877449-86877468 | None:intergenic | 10.0% |
| !! | AATTTAATGAAAAAAAAAAG+AGG | + | chr4.1:86877679-86877698 | MS.gene053130:intron | 10.0% |
| !! | ACACATATATTATTAAAATA+AGG | - | chr4.1:86880234-86880253 | None:intergenic | 10.0% |
| !! | CACATATATTATTAAAATAA+GGG | - | chr4.1:86880233-86880252 | None:intergenic | 10.0% |
| !! | TAATTAAAGGATAATTAAAT+AGG | - | chr4.1:86877334-86877353 | None:intergenic | 10.0% |
| !!! | CCTTTTTTATTTTATTTTAA+GGG | + | chr4.1:86880029-86880048 | MS.gene053130:intron | 10.0% |
| !!! | TCCTTTTTTATTTTATTTTA+AGG | + | chr4.1:86880028-86880047 | MS.gene053130:intron | 10.0% |
| !!! | TTATTTAAATTTTAGAAGTT+TGG | + | chr4.1:86879849-86879868 | MS.gene053130:intron | 10.0% |
| !! | AAAAGCTTGTATTATAAATA+GGG | - | chr4.1:86880314-86880333 | None:intergenic | 15.0% |
| !! | ATATAAGAATACAATGTTAA+AGG | - | chr4.1:86879712-86879731 | None:intergenic | 15.0% |
| !! | ATTAATTAACACAATTTAGT+CGG | + | chr4.1:86877618-86877637 | MS.gene053130:intron | 15.0% |
| !! | ATTTCTGTTATAATTCTATT+AGG | + | chr4.1:86877508-86877527 | MS.gene053130:intron | 15.0% |
| !! | CCCTTAAAATAAAATAAAAA+AGG | - | chr4.1:86880032-86880051 | None:intergenic | 15.0% |
| !! | GAAACAATTATCATAATTAA+AGG | - | chr4.1:86877347-86877366 | None:intergenic | 15.0% |
| !! | TAAAAGCTTGTATTATAAAT+AGG | - | chr4.1:86880315-86880334 | None:intergenic | 15.0% |
| !! | TTGTAACTAAAATTACATAA+AGG | - | chr4.1:86878242-86878261 | None:intergenic | 15.0% |
| !!! | TCAGTTTAATTTTTAAATCT+TGG | + | chr4.1:86878294-86878313 | MS.gene053130:intron | 15.0% |
| !!! | TGAATTAAATCTAGAATTTA+TGG | + | chr4.1:86877591-86877610 | MS.gene053130:intron | 15.0% |
| !!! | TTTTTTTATAATTTTACCAG+AGG | + | chr4.1:86880790-86880809 | MS.gene053130:intron | 15.0% |
| !! | ATAGTTATCAATATTGAAGA+TGG | + | chr4.1:86877746-86877765 | MS.gene053130:intron | 20.0% |
| !! | GATGGAAATTATTATTTATG+AGG | + | chr4.1:86880574-86880593 | MS.gene053130:intron | 20.0% |
| !! | TAACGTTAAACTCAAATTAA+GGG | + | chr4.1:86877374-86877393 | MS.gene053130:intron | 20.0% |
| !! | TAAGAAAAAGTTTCTACATT+TGG | - | chr4.1:86880093-86880112 | None:intergenic | 20.0% |
| !! | TAGAAATCTGAAAAATTTGA+CGG | - | chr4.1:86880663-86880682 | None:intergenic | 20.0% |
| !! | TCAAACAAAGTTTATGTATT+TGG | + | chr4.1:86878659-86878678 | MS.gene053130:intron | 20.0% |
| !! | TGTTATAATTCTATTAGGTT+TGG | + | chr4.1:86877513-86877532 | MS.gene053130:intron | 20.0% |
| !! | TTAACGTTAAACTCAAATTA+AGG | + | chr4.1:86877373-86877392 | MS.gene053130:intron | 20.0% |
| !!! | GTATTTTTTGTTTGAAAACT+CGG | - | chr4.1:86877659-86877678 | None:intergenic | 20.0% |
| !!! | TAAAGTTGATTTTTTTTGTC+AGG | + | chr4.1:86877419-86877438 | MS.gene053130:intron | 20.0% |
| !!! | TACAAGCTTTTATACATTAA+AGG | + | chr4.1:86880323-86880342 | MS.gene053130:intron | 20.0% |
| !!! | TTAAGGGTTTTTAATTATCA+TGG | + | chr4.1:86877390-86877409 | MS.gene053130:intron | 20.0% |
| !!! | TTATCACCTGTATATTTTAT+AGG | + | chr4.1:86880440-86880459 | MS.gene053130:intron | 20.0% |
| !!! | TTTTTGTTTATATTTGAGAC+CGG | - | chr4.1:86878636-86878655 | None:intergenic | 20.0% |
| ! | AAAATCACATCAAAGTTTAC+CGG | - | chr4.1:86880712-86880731 | None:intergenic | 25.0% |
| ! | ACAATAAACCAACAAAAAAG+AGG | - | chr4.1:86877996-86878015 | None:intergenic | 25.0% |
| ! | ACAGGAAAATGATGATTATT+AGG | - | chr4.1:86879031-86879050 | None:intergenic | 25.0% |
| ! | ACATTAAAGGCTCAAATATT+TGG | + | chr4.1:86880336-86880355 | MS.gene053130:intron | 25.0% |
| ! | ACTTTGTATTAAATAGTGCA+TGG | + | chr4.1:86878564-86878583 | MS.gene053130:intron | 25.0% |
| ! | ATAGATATTGCAAACATATG+CGG | - | chr4.1:86877903-86877922 | None:intergenic | 25.0% |
| ! | ATATTATTTATCTCACGGTT+TGG | + | chr4.1:86879931-86879950 | MS.gene053130:intron | 25.0% |
| ! | ATTCTATTAGGTTTGGAAAT+TGG | + | chr4.1:86877520-86877539 | MS.gene053130:intron | 25.0% |
| ! | CCTAATAAAATTGTTTGATC+AGG | - | chr4.1:86878799-86878818 | None:intergenic | 25.0% |
| ! | CTTATTTGTGGAATATTTGA+AGG | + | chr4.1:86880895-86880914 | MS.gene053130:CDS | 25.0% |
| ! | GAATATTTGAAGGTGAATAA+TGG | + | chr4.1:86880905-86880924 | MS.gene053130:intron | 25.0% |
| ! | GACTCATATTATTTATCTCA+CGG | + | chr4.1:86879926-86879945 | MS.gene053130:intron | 25.0% |
| ! | GATAAAAGTTATTCAGTACA+AGG | - | chr4.1:86880425-86880444 | None:intergenic | 25.0% |
| ! | TACAGTAAGTAAATTGAAGA+AGG | + | chr4.1:86880500-86880519 | MS.gene053130:CDS | 25.0% |
| ! | TAGTGTCATCATAATATAAC+AGG | + | chr4.1:86879436-86879455 | MS.gene053130:intron | 25.0% |
| ! | TCAAACAAAGTAGATTTATC+TGG | - | chr4.1:86878698-86878717 | None:intergenic | 25.0% |
| ! | TCAGAATCAAAATGATTACA+AGG | + | chr4.1:86881020-86881039 | MS.gene053130:intron | 25.0% |
| ! | TGATAGAGAAAAGAAATAGA+TGG | + | chr4.1:86879172-86879191 | MS.gene053130:intron | 25.0% |
| ! | TTAAACTGAGAAAACATCAA+TGG | - | chr4.1:86878283-86878302 | None:intergenic | 25.0% |
| ! | TTAGATAGGATTTGAACATT+TGG | + | chr4.1:86879318-86879337 | MS.gene053130:intron | 25.0% |
| ! | TTCTATTAGGTTTGGAAATT+GGG | + | chr4.1:86877521-86877540 | MS.gene053130:intron | 25.0% |
| ! | TTGTCAAATAGAAGTTATAG+CGG | - | chr4.1:86878543-86878562 | None:intergenic | 25.0% |
| !! | CCTGATCAAACAATTTTATT+AGG | + | chr4.1:86878796-86878815 | MS.gene053130:intron | 25.0% |
| !! | CTATTTTATTCATATGCCAA+TGG | + | chr4.1:86878174-86878193 | MS.gene053130:CDS | 25.0% |
| !! | TAATTCTAGAAAGTGATACT+TGG | + | chr4.1:86879498-86879517 | MS.gene053130:intron | 25.0% |
| !! | TTCATTTTCCTGTTACATTT+AGG | - | chr4.1:86879756-86879775 | None:intergenic | 25.0% |
| !!! | GAATTACTTTCTCTTGTTTT+GGG | + | chr4.1:86880848-86880867 | MS.gene053130:CDS | 25.0% |
| !!! | TCTTTTTTGTTGGTTTATTG+TGG | + | chr4.1:86877995-86878014 | MS.gene053130:intron | 25.0% |
| !!! | TGAATTACTTTCTCTTGTTT+TGG | + | chr4.1:86880847-86880866 | MS.gene053130:CDS | 25.0% |
| !!! | TTTTTTGTTATATTCGAGAC+CGG | + | chr4.1:86878724-86878743 | MS.gene053130:intron | 25.0% |
| AAAAAGAGGCAAGAATAAAC+AGG | - | chr4.1:86877982-86878001 | None:intergenic | 30.0% | |
| AAAGTTATTCAGTACAAGGA+TGG | - | chr4.1:86880421-86880440 | None:intergenic | 30.0% | |
| AACTTTGACATCTAATGTGA+AGG | + | chr4.1:86880629-86880648 | MS.gene053130:intron | 30.0% | |
| AAGAGCAAAATTAACCAAAG+AGG | - | chr4.1:86877299-86877318 | None:intergenic | 30.0% | |
| AAGTTATTCAGTACAAGGAT+GGG | - | chr4.1:86880420-86880439 | None:intergenic | 30.0% | |
| AATCTTGGACATTGATGTAT+AGG | + | chr4.1:86878309-86878328 | MS.gene053130:intron | 30.0% | |
| AATGCCTGTTAGAAATTGTT+TGG | + | chr4.1:86879280-86879299 | MS.gene053130:intron | 30.0% | |
| ACATGATAATTTACGTACCA+CGG | - | chr4.1:86879802-86879821 | None:intergenic | 30.0% | |
| ACTCGTCCTATAAAATATAC+AGG | - | chr4.1:86880449-86880468 | None:intergenic | 30.0% | |
| AGAAATTGTTTGGTCGAAAT+TGG | + | chr4.1:86879290-86879309 | MS.gene053130:intron | 30.0% | |
| ATAATATATGTGTCGTGTTG+TGG | + | chr4.1:86880241-86880260 | MS.gene053130:intron | 30.0% | |
| ATCTTGGACATTGATGTATA+GGG | + | chr4.1:86878310-86878329 | MS.gene053130:intron | 30.0% | |
| ATGATAGAGAAGACATATGA+AGG | - | chr4.1:86878864-86878883 | None:intergenic | 30.0% | |
| GAACATAAGTTAAGTTCCAT+AGG | - | chr4.1:86880289-86880308 | None:intergenic | 30.0% | |
| GCGGTTTCTTTAATTAAATG+AGG | + | chr4.1:86879065-86879084 | MS.gene053130:intron | 30.0% | |
| GTTGGATGTTCTAATTGTAT+GGG | + | chr4.1:86878091-86878110 | MS.gene053130:intron | 30.0% | |
| TAACAGGAAAATGAAATCTG+AGG | + | chr4.1:86879761-86879780 | MS.gene053130:intron | 30.0% | |
| TAATCAAGCCTAAATGTAAC+AGG | + | chr4.1:86879745-86879764 | MS.gene053130:intron | 30.0% | |
| TCAATGTTTGTCATGTGTTT+GGG | + | chr4.1:86879379-86879398 | MS.gene053130:intron | 30.0% | |
| TCATATGTCTTCTCTATCAT+GGG | + | chr4.1:86878864-86878883 | MS.gene053130:intron | 30.0% | |
| TCTATTAGGTTTGGAAATTG+GGG | + | chr4.1:86877522-86877541 | MS.gene053130:intron | 30.0% | |
| TGTTGGATGTTCTAATTGTA+TGG | + | chr4.1:86878090-86878109 | MS.gene053130:intron | 30.0% | |
| TTAAGTGATACTCTTCAAGA+TGG | + | chr4.1:86880556-86880575 | MS.gene053130:intron | 30.0% | |
| TTCAATGTTTGTCATGTGTT+TGG | + | chr4.1:86879378-86879397 | MS.gene053130:intron | 30.0% | |
| TTCATATGTCTTCTCTATCA+TGG | + | chr4.1:86878863-86878882 | MS.gene053130:intron | 30.0% | |
| TTCTAACAGGCATTATGATA+GGG | - | chr4.1:86879274-86879293 | None:intergenic | 30.0% | |
| TTTCTAACAGGCATTATGAT+AGG | - | chr4.1:86879275-86879294 | None:intergenic | 30.0% | |
| ! | TGTATATTTTATAGGACGAG+TGG | + | chr4.1:86880448-86880467 | MS.gene053130:intron | 30.0% |
| ! | TGTTTTGCACTTCTTATTGA+GGG | + | chr4.1:86879117-86879136 | MS.gene053130:intron | 30.0% |
| !! | TTGTTTTGCACTTCTTATTG+AGG | + | chr4.1:86879116-86879135 | MS.gene053130:intron | 30.0% |
| !!! | CGAAATTGGTCTTTTTAGAT+AGG | + | chr4.1:86879304-86879323 | MS.gene053130:intron | 30.0% |
| !!! | GTATTTTGAAGCATATGTGT+TGG | + | chr4.1:86877940-86877959 | MS.gene053130:intron | 30.0% |
| !!! | TATTCTTGCCTCTTTTTTGT+TGG | + | chr4.1:86877985-86878004 | MS.gene053130:intron | 30.0% |
| AAAATGAAATCTGAGGAGCA+AGG | + | chr4.1:86879768-86879787 | MS.gene053130:CDS | 35.0% | |
| ACAAGGATGGGAAAGAAATA+TGG | - | chr4.1:86880408-86880427 | None:intergenic | 35.0% | |
| ATAATATGAGTCATGCGTTG+TGG | - | chr4.1:86879918-86879937 | None:intergenic | 35.0% | |
| ATAGAGAAGACATATGAAGG+TGG | - | chr4.1:86878861-86878880 | None:intergenic | 35.0% | |
| CTATTAGGTTTGGAAATTGG+GGG | + | chr4.1:86877523-86877542 | MS.gene053130:intron | 35.0% | |
| GAAAGTGATACTTGGTATGT+AGG | + | chr4.1:86879506-86879525 | MS.gene053130:intron | 35.0% | |
| GCTTTCCAATATTGTCTAAC+CGG | + | chr4.1:86880690-86880709 | MS.gene053130:CDS | 35.0% | |
| TAAAGCAAACTCAAAGGAAC+TGG | + | chr4.1:86878137-86878156 | MS.gene053130:CDS | 35.0% | |
| TATTAGGTTTGGAAATTGGG+GGG | + | chr4.1:86877524-86877543 | MS.gene053130:intron | 35.0% | |
| TCCACTACGTTATACTATTC+CGG | + | chr4.1:86878614-86878633 | MS.gene053130:intron | 35.0% | |
| TCGACCAAACAATTTCTAAC+AGG | - | chr4.1:86879287-86879306 | None:intergenic | 35.0% | |
| TCGATTCTGTTAAACCTCTT+TGG | + | chr4.1:86877282-86877301 | MS.gene053130:intron | 35.0% | |
| TCTAGTGGAAATGCTTTAGT+GGG | - | chr4.1:86879225-86879244 | None:intergenic | 35.0% | |
| TGATTACAAGGTCGTAAACA+TGG | + | chr4.1:86881032-86881051 | MS.gene053130:CDS | 35.0% | |
| TGGTATCATGTTTATGCTGT+TGG | + | chr4.1:86878015-86878034 | MS.gene053130:intron | 35.0% | |
| TTCGAGTAAAGCAAACTCAA+AGG | + | chr4.1:86878131-86878150 | MS.gene053130:CDS | 35.0% | |
| TTGGAGTGGTATTTAACTGT+TGG | + | chr4.1:86878073-86878092 | MS.gene053130:intron | 35.0% | |
| ! | AAAGTGCTTCAATTCCTTCT+GGG | - | chr4.1:86879613-86879632 | None:intergenic | 35.0% |
| ! | ATATTTTATAGGACGAGTGG+AGG | + | chr4.1:86880451-86880470 | MS.gene053130:intron | 35.0% |
| ! | GTAATCATACCTCCTTTTCT+AGG | - | chr4.1:86880536-86880555 | None:intergenic | 35.0% |
| ! | GTTTACCGGTTAGACAATAT+TGG | - | chr4.1:86880698-86880717 | None:intergenic | 35.0% |
| ! | TAATTTTGTTACAGCCCAGA+AGG | + | chr4.1:86879596-86879615 | MS.gene053130:intron | 35.0% |
| ! | TTAACAGAATCGAAGAGTAC+CGG | - | chr4.1:86877275-86877294 | None:intergenic | 35.0% |
| !! | AAATGTTAACTTGTGCCCTT+GGG | + | chr4.1:86880052-86880071 | MS.gene053130:intron | 35.0% |
| !! | ATATTGGACTAGTATCTGCA+AGG | + | chr4.1:86878045-86878064 | MS.gene053130:intron | 35.0% |
| !! | TAGTATCTGCAAGGTACTTT+TGG | + | chr4.1:86878054-86878073 | MS.gene053130:intron | 35.0% |
| ACCGGAATAGTATAACGTAG+TGG | - | chr4.1:86878618-86878637 | None:intergenic | 40.0% | |
| AGCTCAAGTCAGCTTATTTG+TGG | + | chr4.1:86880883-86880902 | MS.gene053130:CDS | 40.0% | |
| AGTGATACTTGGTATGTAGG+TGG | + | chr4.1:86879509-86879528 | MS.gene053130:intron | 40.0% | |
| ATCACGACAAGGATTGTTTG+GGG | - | chr4.1:86878468-86878487 | None:intergenic | 40.0% | |
| ATGTGTTTGGGAGAGACTTA+AGG | + | chr4.1:86879391-86879410 | MS.gene053130:intron | 40.0% | |
| CACACTCTTGGCAACAATTA+AGG | - | chr4.1:86879973-86879992 | None:intergenic | 40.0% | |
| CATGTTCATGATGTTGGCAA+TGG | + | chr4.1:86878890-86878909 | MS.gene053130:intron | 40.0% | |
| CGTTTGATCAACCTCAATTG+CGG | + | chr4.1:86877813-86877832 | MS.gene053130:intron | 40.0% | |
| GATCACGACAAGGATTGTTT+GGG | - | chr4.1:86878469-86878488 | None:intergenic | 40.0% | |
| GCAAACTTACTCAATCAACC+CGG | - | chr4.1:86878205-86878224 | None:intergenic | 40.0% | |
| GGAACTAAGTACAGTTCCAT+AGG | + | chr4.1:86879870-86879889 | MS.gene053130:intron | 40.0% | |
| GGGTATCATGTTCATGATGT+TGG | + | chr4.1:86878884-86878903 | MS.gene053130:intron | 40.0% | |
| GTAAACATGGATCAGTGGAT+GGG | + | chr4.1:86881045-86881064 | MS.gene053130:CDS | 40.0% | |
| GTAGGGCAAAAAGAAACTGA+AGG | - | chr4.1:86878444-86878463 | None:intergenic | 40.0% | |
| GTCTAGTGGAAATGCTTTAG+TGG | - | chr4.1:86879226-86879245 | None:intergenic | 40.0% | |
| TATATGTGTCGTGTTGTGGT+TGG | + | chr4.1:86880245-86880264 | MS.gene053130:intron | 40.0% | |
| TCATATGCCAATGGATCTTC+CGG | + | chr4.1:86878183-86878202 | MS.gene053130:CDS | 40.0% | |
| TGACATCTAATGTGAAGGTC+CGG | + | chr4.1:86880634-86880653 | MS.gene053130:intron | 40.0% | |
| TGATCACGACAAGGATTGTT+TGG | - | chr4.1:86878470-86878489 | None:intergenic | 40.0% | |
| TGCATGGCAGAACAATATAG+TGG | + | chr4.1:86878580-86878599 | MS.gene053130:intron | 40.0% | |
| TGCTGTTGGTCAAACGATAT+TGG | + | chr4.1:86878029-86878048 | MS.gene053130:intron | 40.0% | |
| TGTATAAGTGAGCAGAAGCT+TGG | + | chr4.1:86879349-86879368 | MS.gene053130:intron | 40.0% | |
| TTCCTTAACTTATGCCCCAA+GGG | - | chr4.1:86880070-86880089 | None:intergenic | 40.0% | |
| TTGTTATATTCGAGACCGGA+GGG | + | chr4.1:86878728-86878747 | MS.gene053130:intron | 40.0% | |
| TTTGGAAATTGGGGGGTAAT+TGG | + | chr4.1:86877531-86877550 | MS.gene053130:intron | 40.0% | |
| ! | ATCAGTGGATGGGATTTTTC+CGG | + | chr4.1:86881055-86881074 | MS.gene053130:CDS | 40.0% |
| ! | CAAAGTGCTTCAATTCCTTC+TGG | - | chr4.1:86879614-86879633 | None:intergenic | 40.0% |
| ! | GCTATGCAATCATGCAGTTT+TGG | + | chr4.1:86880380-86880399 | MS.gene053130:intron | 40.0% |
| ! | TGAAGCACTTTGTGCTGATA+TGG | + | chr4.1:86879622-86879641 | MS.gene053130:CDS | 40.0% |
| ! | TTTGTTATATTCGAGACCGG+AGG | + | chr4.1:86878727-86878746 | MS.gene053130:intron | 40.0% |
| !! | AAACTGAAGGCATCAATCTG+TGG | - | chr4.1:86878431-86878450 | None:intergenic | 40.0% |
| !! | AACTGAAGGCATCAATCTGT+GGG | - | chr4.1:86878430-86878449 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTTG+GGG | + | chr4.1:86880053-86880072 | MS.gene053130:intron | 40.0% |
| !! | ACAAATAAGCTGACTTGAGC+TGG | - | chr4.1:86880884-86880903 | None:intergenic | 40.0% |
| !! | AGGTGGATCATACTGATTTG+AGG | + | chr4.1:86879645-86879664 | MS.gene053130:CDS | 40.0% |
| !! | ATGCTTTTCTGTTTCTCCTC+TGG | - | chr4.1:86880809-86880828 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | + | chr4.1:86880051-86880070 | MS.gene053130:intron | 40.0% |
| !! | GAGAGGCTTAAAAGCACTAA+GGG | + | chr4.1:86880473-86880492 | MS.gene053130:CDS | 40.0% |
| !! | TGAGGATTTTGATGCTTGCT+TGG | + | chr4.1:86879663-86879682 | MS.gene053130:CDS | 40.0% |
| !! | TTTATCTCACGGTTTGGTGA+AGG | + | chr4.1:86879937-86879956 | MS.gene053130:intron | 40.0% |
| AATCAACCCGGAAGATCCAT+TGG | - | chr4.1:86878193-86878212 | None:intergenic | 45.0% | |
| ACAGACAGCCACATATGTTC+CGG | + | chr4.1:86878827-86878846 | MS.gene053130:intron | 45.0% | |
| ACAGTTCCATAGGTCCTGTA+CGG | + | chr4.1:86879880-86879899 | MS.gene053130:intron | 45.0% | |
| ACGCGCTGCTTCAAAGAAAA+CGG | + | chr4.1:86877207-86877226 | MS.gene053130:CDS | 45.0% | |
| ACTACCAGACCTAGAAAAGG+AGG | + | chr4.1:86880524-86880543 | MS.gene053130:CDS | 45.0% | |
| AGGTCGTAAACATGGATCAG+TGG | + | chr4.1:86881040-86881059 | MS.gene053130:CDS | 45.0% | |
| AGTGCTGCATTTCACACTCT+TGG | - | chr4.1:86879985-86880004 | None:intergenic | 45.0% | |
| ATCAATCTGTGGGAAGTGAG+GGG | - | chr4.1:86878420-86878439 | None:intergenic | 45.0% | |
| ATTAAAGAAACCGCCACCCA+TGG | - | chr4.1:86879059-86879078 | None:intergenic | 45.0% | |
| CAGCAAAGAAGATGAGAAGC+GGG | - | chr4.1:86879008-86879027 | None:intergenic | 45.0% | |
| CATATGCCAATGGATCTTCC+GGG | + | chr4.1:86878184-86878203 | MS.gene053130:CDS | 45.0% | |
| CATATGCCTCATAAACCTCG+AGG | - | chr4.1:86877845-86877864 | None:intergenic | 45.0% | |
| CATCAATCTGTGGGAAGTGA+GGG | - | chr4.1:86878421-86878440 | None:intergenic | 45.0% | |
| CCATAACCTCGAGGTTTATG+AGG | + | chr4.1:86877836-86877855 | MS.gene053130:intron | 45.0% | |
| CCTCATAAACCTCGAGGTTA+TGG | - | chr4.1:86877839-86877858 | None:intergenic | 45.0% | |
| CGTAAACATGGATCAGTGGA+TGG | + | chr4.1:86881044-86881063 | MS.gene053130:CDS | 45.0% | |
| CTGAAAAATTTGACGGCCTC+CGG | - | chr4.1:86880656-86880675 | None:intergenic | 45.0% | |
| CTGTCAAACCGGAACATATG+TGG | - | chr4.1:86878838-86878857 | None:intergenic | 45.0% | |
| GCAGCAAAGAAGATGAGAAG+CGG | - | chr4.1:86879009-86879028 | None:intergenic | 45.0% | |
| GGTGTTTCCTTCACACAATG+CGG | - | chr4.1:86878950-86878969 | None:intergenic | 45.0% | |
| GTGAAGGAAACACCCTATGA+TGG | + | chr4.1:86878956-86878975 | MS.gene053130:intron | 45.0% | |
| GTTCCTTAACTTATGCCCCA+AGG | - | chr4.1:86880071-86880090 | None:intergenic | 45.0% | |
| TATGAAGGTGGCTGTCAAAC+CGG | - | chr4.1:86878849-86878868 | None:intergenic | 45.0% | |
| TATGAGTCATGCGTTGTGGT+CGG | - | chr4.1:86879914-86879933 | None:intergenic | 45.0% | |
| TCACGACAAGGATTGTTTGG+GGG | - | chr4.1:86878467-86878486 | None:intergenic | 45.0% | |
| TGACAACACTGATCACGACA+AGG | - | chr4.1:86878479-86878498 | None:intergenic | 45.0% | |
| TGGACATATGCCCTGTTGTT+GGG | - | chr4.1:86879248-86879267 | None:intergenic | 45.0% | |
| TTAAAGAAACCGCCACCCAT+GGG | - | chr4.1:86879058-86879077 | None:intergenic | 45.0% | |
| TTCCACTAGACCCAACAACA+GGG | + | chr4.1:86879235-86879254 | MS.gene053130:intron | 45.0% | |
| TTGGGAGAGACTTAAGGTTG+TGG | + | chr4.1:86879397-86879416 | MS.gene053130:intron | 45.0% | |
| TTTCCACTAGACCCAACAAC+AGG | + | chr4.1:86879234-86879253 | MS.gene053130:intron | 45.0% | |
| ! | ACTTTGTGCTGATATGGAGG+TGG | + | chr4.1:86879628-86879647 | MS.gene053130:CDS | 45.0% |
| ! | AGCACTTTGTGCTGATATGG+AGG | + | chr4.1:86879625-86879644 | MS.gene053130:CDS | 45.0% |
| ! | CATACCTCCTTTTCTAGGTC+TGG | - | chr4.1:86880531-86880550 | None:intergenic | 45.0% |
| ! | CATTTTCCTGTCCATCCCAT+GGG | + | chr4.1:86879040-86879059 | MS.gene053130:intron | 45.0% |
| ! | GGAGCAAGGATATTTTACCG+TGG | + | chr4.1:86879782-86879801 | MS.gene053130:CDS | 45.0% |
| ! | TCATTTTCCTGTCCATCCCA+TGG | + | chr4.1:86879039-86879058 | MS.gene053130:intron | 45.0% |
| !! | CATGTTAACTTGTGCCCTGT+GGG | - | chr4.1:86880209-86880228 | None:intergenic | 45.0% |
| !! | GGAGAGGCTTAAAAGCACTA+AGG | + | chr4.1:86880472-86880491 | MS.gene053130:CDS | 45.0% |
| !! | TCATGTTAACTTGTGCCCTG+TGG | - | chr4.1:86880210-86880229 | None:intergenic | 45.0% |
| !! | TCTGCAAGGTACTTTTGGAG+TGG | + | chr4.1:86878059-86878078 | MS.gene053130:intron | 45.0% |
| !! | AACAAAATAAATATTAAAAT+AGG | - | chr4.1:86879101-86879120 | None:intergenic | 5.0% |
| AACCTTCCGTACAGGACCTA+TGG | - | chr4.1:86879889-86879908 | None:intergenic | 50.0% | |
| ACAAGGATTGTTTGGGGGGT+AGG | - | chr4.1:86878462-86878481 | None:intergenic | 50.0% | |
| ACTTAAGGTTGTGGTGGCTG+AGG | + | chr4.1:86879406-86879425 | MS.gene053130:intron | 50.0% | |
| AGTGAGGGGAATACATGGCA+AGG | - | chr4.1:86878406-86878425 | None:intergenic | 50.0% | |
| ATGTGTCGTGTTGTGGTTGG+AGG | + | chr4.1:86880248-86880267 | MS.gene053130:intron | 50.0% | |
| CAAGGATTGTTTGGGGGGTA+GGG | - | chr4.1:86878461-86878480 | None:intergenic | 50.0% | |
| CACGACAAGGATTGTTTGGG+GGG | - | chr4.1:86878466-86878485 | None:intergenic | 50.0% | |
| CAGGCATTATGATAGGGTGC+TGG | - | chr4.1:86879268-86879287 | None:intergenic | 50.0% | |
| CATCTAATGTGAAGGTCCGG+AGG | + | chr4.1:86880637-86880656 | MS.gene053130:intron | 50.0% | |
| CGCGCTGCTTCAAAGAAAAC+GGG | + | chr4.1:86877208-86877227 | MS.gene053130:CDS | 50.0% | |
| CTGGACATATGCCCTGTTGT+TGG | - | chr4.1:86879249-86879268 | None:intergenic | 50.0% | |
| GACAGCAAGGTTAGGACCTA+TGG | + | chr4.1:86880270-86880289 | MS.gene053130:intron | 50.0% | |
| GCATCAATCTGTGGGAAGTG+AGG | - | chr4.1:86878422-86878441 | None:intergenic | 50.0% | |
| GGAGAGACTTAAGGTTGTGG+TGG | + | chr4.1:86879400-86879419 | MS.gene053130:intron | 50.0% | |
| GGCACTACCAGACCTAGAAA+AGG | + | chr4.1:86880521-86880540 | MS.gene053130:CDS | 50.0% | |
| GTTGGCAATGGACACTCATC+TGG | + | chr4.1:86878902-86878921 | MS.gene053130:intron | 50.0% | |
| TCAACAGCCGCATTGTGTGA+AGG | + | chr4.1:86878940-86878959 | MS.gene053130:intron | 50.0% | |
| TCACACAATGCGGCTGTTGA+TGG | - | chr4.1:86878940-86878959 | None:intergenic | 50.0% | |
| TGCCCTTGGGGCATAAGTTA+AGG | + | chr4.1:86880065-86880084 | MS.gene053130:intron | 50.0% | |
| TGCTACAGCATTACTCCCTC+CGG | - | chr4.1:86878746-86878765 | None:intergenic | 50.0% | |
| TGGGAAGTGAGGGGAATACA+TGG | - | chr4.1:86878411-86878430 | None:intergenic | 50.0% | |
| TTATAGGACGAGTGGAGGAG+AGG | + | chr4.1:86880456-86880475 | MS.gene053130:intron | 50.0% | |
| TTCCATAGGTCCTGTACGGA+AGG | + | chr4.1:86879884-86879903 | MS.gene053130:intron | 50.0% | |
| TTGGGGGGTAATTGGTGAGA+TGG | + | chr4.1:86877539-86877558 | MS.gene053130:intron | 50.0% | |
| ! | AACACCCTATGATGGTGCTC+TGG | + | chr4.1:86878964-86878983 | MS.gene053130:intron | 50.0% |
| ! | AAGCATCGTGACCGCAATTG+AGG | + | chr4.1:86877868-86877887 | MS.gene053130:intron | 50.0% |
| !! | AGAATCGAAGAGTACCGGAG+CGG | - | chr4.1:86877270-86877289 | None:intergenic | 50.0% |
| !! | AGTGAGCAGAAGCTTGGTGT+TGG | + | chr4.1:86879355-86879374 | MS.gene053130:intron | 50.0% |
| !! | CTCCTTAACTTGTGCCCACA+GGG | + | chr4.1:86880192-86880211 | MS.gene053130:intron | 50.0% |
| CAATTGCGGCCATAACCTCG+AGG | + | chr4.1:86877827-86877846 | MS.gene053130:intron | 55.0% | |
| CGAGGTTATGGCCGCAATTG+AGG | - | chr4.1:86877827-86877846 | None:intergenic | 55.0% | |
| GCAAACATATGCGGTCGACG+TGG | - | chr4.1:86877894-86877913 | None:intergenic | 55.0% | |
| GGTCGGAAAACCTTCCGTAC+AGG | - | chr4.1:86879897-86879916 | None:intergenic | 55.0% | |
| GGTTGGAGGACAGCAAGGTT+AGG | + | chr4.1:86880262-86880281 | MS.gene053130:intron | 55.0% | |
| GTTGTGGTTGGAGGACAGCA+AGG | + | chr4.1:86880257-86880276 | MS.gene053130:intron | 55.0% | |
| TGCCCTGTGGGCACAAGTTA+AGG | - | chr4.1:86880197-86880216 | None:intergenic | 55.0% | |
| TGCCCTGTTGTTGGGTCTAG+TGG | - | chr4.1:86879240-86879259 | None:intergenic | 55.0% | |
| TTTCCTGTCCATCCCATGGG+TGG | + | chr4.1:86879043-86879062 | MS.gene053130:intron | 55.0% | |
| ! | AAGCGGGCATTGCAAGAGAC+AGG | - | chr4.1:86878992-86879011 | None:intergenic | 55.0% |
| ! | AGGAGCCAGAGCACCATCAT+AGG | - | chr4.1:86878972-86878991 | None:intergenic | 55.0% |
| ! | GGAGCCAGAGCACCATCATA+GGG | - | chr4.1:86878971-86878990 | None:intergenic | 55.0% |
| !! | GCTCCTTAACTTGTGCCCAC+AGG | + | chr4.1:86880191-86880210 | MS.gene053130:intron | 55.0% |
| ACCGGAGCGGAAGAGATCAG+CGG | - | chr4.1:86877257-86877276 | None:intergenic | 60.0% | |
| AGAAACCGCCACCCATGGGA+TGG | - | chr4.1:86879054-86879073 | None:intergenic | 60.0% | |
| AGCGGCGGAGGGATTGGAAT+TGG | - | chr4.1:86877239-86877258 | None:intergenic | 60.0% | |
| GGTCGACGTGGCCTCAATTG+CGG | - | chr4.1:86877882-86877901 | None:intergenic | 60.0% | |
| CCTGTCCATCCCATGGGTGG+CGG | + | chr4.1:86879046-86879065 | MS.gene053130:intron | 65.0% | |
| CGGAAGAGATCAGCGGCGGA+GGG | - | chr4.1:86877250-86877269 | None:intergenic | 65.0% | |
| GAGATCAGCGGCGGAGGGAT+TGG | - | chr4.1:86877245-86877264 | None:intergenic | 65.0% | |
| GCCGCTGATCTCTTCCGCTC+CGG | + | chr4.1:86877253-86877272 | MS.gene053130:CDS | 65.0% | |
| GGAGCGGAAGAGATCAGCGG+CGG | - | chr4.1:86877254-86877273 | None:intergenic | 65.0% | |
| GGTTGTGGTGGCTGAGGCAG+AGG | + | chr4.1:86879412-86879431 | MS.gene053130:intron | 65.0% | |
| CCGCCACCCATGGGATGGAC+AGG | - | chr4.1:86879049-86879068 | None:intergenic | 70.0% | |
| GCGGAAGAGATCAGCGGCGG+AGG | - | chr4.1:86877251-86877270 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 86877202 | 86881089 | 86877202 | ID=MS.gene053130 |
| chr4.1 | mRNA | 86877202 | 86881089 | 86877202 | ID=MS.gene053130.t1;Parent=MS.gene053130 |
| chr4.1 | exon | 86877202 | 86877289 | 86877202 | ID=MS.gene053130.t1.exon1;Parent=MS.gene053130.t1 |
| chr4.1 | CDS | 86877202 | 86877289 | 86877202 | ID=cds.MS.gene053130.t1;Parent=MS.gene053130.t1 |
| chr4.1 | exon | 86878130 | 86878214 | 86878130 | ID=MS.gene053130.t1.exon2;Parent=MS.gene053130.t1 |
| chr4.1 | CDS | 86878130 | 86878214 | 86878130 | ID=cds.MS.gene053130.t1;Parent=MS.gene053130.t1 |
| chr4.1 | exon | 86879610 | 86879684 | 86879610 | ID=MS.gene053130.t1.exon3;Parent=MS.gene053130.t1 |
| chr4.1 | CDS | 86879610 | 86879684 | 86879610 | ID=cds.MS.gene053130.t1;Parent=MS.gene053130.t1 |
| chr4.1 | exon | 86879767 | 86879803 | 86879767 | ID=MS.gene053130.t1.exon4;Parent=MS.gene053130.t1 |
| chr4.1 | CDS | 86879767 | 86879803 | 86879767 | ID=cds.MS.gene053130.t1;Parent=MS.gene053130.t1 |
| chr4.1 | exon | 86880462 | 86880545 | 86880462 | ID=MS.gene053130.t1.exon5;Parent=MS.gene053130.t1 |
| chr4.1 | CDS | 86880462 | 86880545 | 86880462 | ID=cds.MS.gene053130.t1;Parent=MS.gene053130.t1 |
| chr4.1 | exon | 86880651 | 86880711 | 86880651 | ID=MS.gene053130.t1.exon6;Parent=MS.gene053130.t1 |
| chr4.1 | CDS | 86880651 | 86880711 | 86880651 | ID=cds.MS.gene053130.t1;Parent=MS.gene053130.t1 |
| chr4.1 | exon | 86880810 | 86880916 | 86880810 | ID=MS.gene053130.t1.exon7;Parent=MS.gene053130.t1 |
| chr4.1 | CDS | 86880810 | 86880916 | 86880810 | ID=cds.MS.gene053130.t1;Parent=MS.gene053130.t1 |
| chr4.1 | exon | 86881024 | 86881089 | 86881024 | ID=MS.gene053130.t1.exon8;Parent=MS.gene053130.t1 |
| chr4.1 | CDS | 86881024 | 86881089 | 86881024 | ID=cds.MS.gene053130.t1;Parent=MS.gene053130.t1 |
| Gene Sequence |
| Protein sequence |
