Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38292.t1 | XP_013454609.1 | 100 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 4.40E-125 | 457.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38292.t1 | Q92564 | 39.2 | 186 | 108 | 5 | 41 | 226 | 110 | 290 | 5.2e-34 | 146.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38292.t1 | B7FLH3 | 100.0 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 3.2e-125 | 457.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene38292 | MS.gene62501 | PPI |
MS.gene38292 | MS.gene045728 | PPI |
MS.gene038980 | MS.gene38292 | PPI |
MS.gene045729 | MS.gene38292 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38292.t1 | MTR_4g008540 | 100.000 | 228 | 0 | 0 | 1 | 228 | 1 | 228 | 4.96e-171 | 469 |
MS.gene38292.t1 | MTR_4g116980 | 61.881 | 202 | 77 | 0 | 26 | 227 | 26 | 227 | 2.80e-95 | 278 |
MS.gene38292.t1 | MTR_2g064415 | 28.365 | 208 | 146 | 3 | 17 | 224 | 39 | 243 | 6.17e-27 | 104 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38292.t1 | AT1G15860 | 74.779 | 226 | 57 | 0 | 1 | 226 | 1 | 226 | 3.74e-128 | 361 |
MS.gene38292.t1 | AT1G15860 | 74.779 | 226 | 57 | 0 | 1 | 226 | 1 | 226 | 3.74e-128 | 361 |
MS.gene38292.t1 | AT1G15860 | 71.915 | 235 | 57 | 1 | 1 | 226 | 1 | 235 | 4.20e-125 | 354 |
MS.gene38292.t1 | AT3G12760 | 30.986 | 213 | 143 | 4 | 17 | 228 | 39 | 248 | 3.17e-32 | 118 |
Find 50 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAATTACTTTCTCTTGTTT+TGG | 0.145418 | 4.3:+86768319 | MS.gene38292:CDS |
CAAAGTGCTTCAATTCCTTC+TGG | 0.257324 | 4.3:-86767263 | None:intergenic |
GTTTACCAGTTAGACAATAT+TGG | 0.279270 | 4.3:-86768167 | None:intergenic |
GCTTTCCAATATTGTCTAAC+TGG | 0.285369 | 4.3:+86768162 | MS.gene38292:CDS |
TCATATGCCAATGGATCTTC+CGG | 0.288578 | 4.3:+86765833 | MS.gene38292:CDS |
ACGAAATTATCCAGGATTAA+AGG | 0.303093 | 4.3:-86768870 | None:intergenic |
TGAAGCACTTTGTGCTGATA+TGG | 0.334505 | 4.3:+86767274 | MS.gene38292:CDS |
AGCTCAAGTCAGCTTATTTG+TGG | 0.374125 | 4.3:+86768355 | MS.gene38292:CDS |
ATTAAAGGCCACGCAAGTTC+GGG | 0.375847 | 4.3:-86768855 | None:intergenic |
TCCTGGATAATTTCGTTGAA+TGG | 0.379334 | 4.3:+86768877 | MS.gene38292:CDS |
GATTAAAGGCCACGCAAGTT+CGG | 0.390159 | 4.3:-86768856 | None:intergenic |
AGCGGCGGAAGGATTGGAAT+TGG | 0.406831 | 4.3:-86764889 | None:intergenic |
ACTTGCGTGGCCTTTAATCC+TGG | 0.416017 | 4.3:+86768860 | MS.gene38292:CDS |
ACAAATAAGCTGACTTGAGC+TGG | 0.417133 | 4.3:-86768353 | None:intergenic |
CTTATTTGTGGAATATTTGA+AGG | 0.426551 | 4.3:+86768367 | MS.gene38292:CDS |
GAGATCAGCGGCGGAAGGAT+TGG | 0.426559 | 4.3:-86764895 | None:intergenic |
AAAGTGCTTCAATTCCTTCT+GGG | 0.431600 | 4.3:-86767262 | None:intergenic |
TGTTTACCTCGTTGCAAAAC+CGG | 0.432049 | 4.3:-86768547 | None:intergenic |
TAAAGCAAACTCAAAGGAAC+TGG | 0.445115 | 4.3:+86765787 | MS.gene38292:CDS |
CATATGCCAATGGATCTTCC+GGG | 0.450278 | 4.3:+86765834 | MS.gene38292:CDS |
CGCGCTGCTTCAAAGAAAAC+GGG | 0.451962 | 4.3:+86764861 | MS.gene38292:CDS |
ACGCGCTGCTTCAAAGAAAA+CGG | 0.452661 | 4.3:+86764860 | MS.gene38292:CDS |
ACCATTCAACGAAATTATCC+AGG | 0.507254 | 4.3:-86768878 | None:intergenic |
CGTAAACATGGATCAGTGGA+TGG | 0.509518 | 4.3:+86768517 | MS.gene38292:CDS |
AGGTGGATCATACTGATTTG+AGG | 0.520944 | 4.3:+86767297 | MS.gene38292:CDS |
GGAGAGGCTTAAAAGCACTA+AGG | 0.525006 | 4.3:+86767940 | MS.gene38292:CDS |
GCCGCTGATCTCTTCCGCTC+CGG | 0.527671 | 4.3:+86764906 | MS.gene38292:CDS |
TACAGTAAGTAAATTGAAGA+AGG | 0.531444 | 4.3:+86767968 | MS.gene38292:CDS |
AATCAACCCGGAAGATCCAT+TGG | 0.540430 | 4.3:-86765840 | None:intergenic |
GGCACTACCAGACCTAGAAA+AGG | 0.541569 | 4.3:+86767989 | MS.gene38292:CDS |
TGATTACAAGGTCGTAAACA+TGG | 0.566445 | 4.3:+86768505 | MS.gene38292:CDS |
CGGAAGAGATCAGCGGCGGA+AGG | 0.567369 | 4.3:-86764900 | None:intergenic |
GAGAGGCTTAAAAGCACTAA+GGG | 0.601499 | 4.3:+86767941 | MS.gene38292:CDS |
TCAGAATCAAAATGATTACA+AGG | 0.602312 | 4.3:+86768493 | MS.gene38292:intron |
GTAAACATGGATCAGTGGAT+GGG | 0.607934 | 4.3:+86768518 | MS.gene38292:CDS |
TAACAGGAAAATGAAATCTG+AGG | 0.620467 | 4.3:+86767416 | MS.gene38292:intron |
TTATAGGACGAGTGGAGGAG+AGG | 0.626288 | 4.3:+86767924 | MS.gene38292:intron |
TTCGAGTAAAGCAAACTCAA+AGG | 0.628781 | 4.3:+86765781 | MS.gene38292:CDS |
CATCTAATGTGAAGGTCCGG+AGG | 0.636647 | 4.3:+86768109 | MS.gene38292:intron |
ACTATGATCCCGAACTTGCG+TGG | 0.641319 | 4.3:+86768847 | MS.gene38292:CDS |
AGCACTTTGTGCTGATATGG+AGG | 0.645819 | 4.3:+86767277 | MS.gene38292:CDS |
AGGTCGTAAACATGGATCAG+TGG | 0.649284 | 4.3:+86768513 | MS.gene38292:CDS |
GGATCATAGTCACTAAGCGA+CGG | 0.668673 | 4.3:-86768834 | None:intergenic |
AAAATGAAATCTGAGGAGCA+AGG | 0.670608 | 4.3:+86767423 | MS.gene38292:CDS |
ACTACCAGACCTAGAAAAGG+AGG | 0.671613 | 4.3:+86767992 | MS.gene38292:CDS |
GGAGCGGAAGAGATCAGCGG+CGG | 0.679365 | 4.3:-86764904 | None:intergenic |
ACTTTGTGCTGATATGGAGG+TGG | 0.689902 | 4.3:+86767280 | MS.gene38292:CDS |
ACCGGAGCGGAAGAGATCAG+CGG | 0.704839 | 4.3:-86764907 | None:intergenic |
GCAAACTTACTCAATCAACC+CGG | 0.731622 | 4.3:-86765852 | None:intergenic |
AGAATCGAAGAGTACCGGAG+CGG | 0.764423 | 4.3:-86764920 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAAAAAAAATAAAAAAA+AGG | - | chr4.3:86767687-86767706 | None:intergenic | 0.0% |
!!! | TTATTTAAATTTTAGAAGTT+TGG | + | chr4.3:86767504-86767523 | MS.gene38292:intron | 10.0% |
!! | AAAAAATTGAAGAACAAAAA+AGG | - | chr4.3:86765101-86765120 | None:intergenic | 15.0% |
!! | AAAAGCTTGTATTATAAATA+GGG | - | chr4.3:86767782-86767801 | None:intergenic | 15.0% |
!! | ATATAAGAATACAATGTTAA+AGG | - | chr4.3:86767367-86767386 | None:intergenic | 15.0% |
!! | ATTAATTAACACAATTTAGT+CGG | + | chr4.3:86765270-86765289 | MS.gene38292:intron | 15.0% |
!! | ATTTAATGAAGAAAAAAAAG+AGG | + | chr4.3:86765332-86765351 | MS.gene38292:intron | 15.0% |
!! | TAAAAGCTTGTATTATAAAT+AGG | - | chr4.3:86767783-86767802 | None:intergenic | 15.0% |
!! | TAACTAAAGGATAATTAAAT+AGG | - | chr4.3:86764987-86765006 | None:intergenic | 15.0% |
!! | TAATGTTAAACTCAAATTAA+GGG | + | chr4.3:86765026-86765045 | MS.gene38292:intron | 15.0% |
!! | TTAATGTTAAACTCAAATTA+AGG | + | chr4.3:86765025-86765044 | MS.gene38292:intron | 15.0% |
!! | TTGTAACTAAAATTACATAA+AGG | - | chr4.3:86765892-86765911 | None:intergenic | 15.0% |
!!! | TCAGTTTAATTTTTAAATCT+TGG | + | chr4.3:86765944-86765963 | MS.gene38292:intron | 15.0% |
!!! | TGAATTAAATCTAGAATTTA+TGG | + | chr4.3:86765243-86765262 | MS.gene38292:intron | 15.0% |
!!! | TTATCACCTATATATTTTAT+AGG | + | chr4.3:86767908-86767927 | MS.gene38292:intron | 15.0% |
!! | AGTTATAAATTGAAATGAAG+TGG | - | chr4.3:86768794-86768813 | None:intergenic | 20.0% |
!! | ATAGTTATCAATATTGAAGA+TGG | + | chr4.3:86765399-86765418 | MS.gene38292:intron | 20.0% |
!! | ATATTATTTATCTCACTGTT+TGG | + | chr4.3:86767586-86767605 | MS.gene38292:intron | 20.0% |
!! | ATTTCTGTTATAATTCTGTT+AGG | + | chr4.3:86765160-86765179 | MS.gene38292:intron | 20.0% |
!! | GATAAAAGTTATTCAGTATA+AGG | - | chr4.3:86767893-86767912 | None:intergenic | 20.0% |
!! | GATGGAAATTATTATTTATG+AGG | + | chr4.3:86768042-86768061 | MS.gene38292:intron | 20.0% |
!! | TAAACAAGATATGAATACTA+CGG | - | chr4.3:86768644-86768663 | None:intergenic | 20.0% |
!! | TAGAAATCTGAAAAATTTGA+CGG | - | chr4.3:86768135-86768154 | None:intergenic | 20.0% |
!! | TCAAACAAAGTTTATGTATT+GGG | + | chr4.3:86766311-86766330 | MS.gene38292:intron | 20.0% |
!! | TGAACAATTATCATAACTAA+AGG | - | chr4.3:86765000-86765019 | None:intergenic | 20.0% |
!!! | GTATTTTTTGTTTGAAAACT+CGG | - | chr4.3:86765311-86765330 | None:intergenic | 20.0% |
!!! | TAAAGTTGATTTTTTTTGTC+AGG | + | chr4.3:86765071-86765090 | MS.gene38292:intron | 20.0% |
!!! | TACAAGCTTTTATACATTAA+AGG | + | chr4.3:86767791-86767810 | MS.gene38292:intron | 20.0% |
!!! | TATCTTGTTTAATTAATCTC+TGG | + | chr4.3:86768653-86768672 | MS.gene38292:intron | 20.0% |
!!! | TTAAGGGTTTTTAATTATCA+TGG | + | chr4.3:86765042-86765061 | MS.gene38292:intron | 20.0% |
!!! | TTTTTGTTTATATTTGAGAC+CGG | - | chr4.3:86766288-86766307 | None:intergenic | 20.0% |
! | AAAGTTATTCAGTATAAGGA+TGG | - | chr4.3:86767889-86767908 | None:intergenic | 25.0% |
! | AAGTTATTCAGTATAAGGAT+GGG | - | chr4.3:86767888-86767907 | None:intergenic | 25.0% |
! | AATAAGAGCAAAATTAACCA+AGG | - | chr4.3:86764955-86764974 | None:intergenic | 25.0% |
! | ACAATAAACCAACAAAAAAG+AGG | - | chr4.3:86765646-86765665 | None:intergenic | 25.0% |
! | ACAGGAAAATGATGATTATT+AGG | - | chr4.3:86766684-86766703 | None:intergenic | 25.0% |
! | ACATTAAAGGCTCAAATATT+TGG | + | chr4.3:86767804-86767823 | MS.gene38292:intron | 25.0% |
! | ACTCGTCCTATAAAATATAT+AGG | - | chr4.3:86767917-86767936 | None:intergenic | 25.0% |
! | ACTTTGTATTAAATAGTGCA+TGG | + | chr4.3:86766216-86766235 | MS.gene38292:intron | 25.0% |
! | ATAATATATTTGTCGTGTTG+TGG | + | chr4.3:86767709-86767728 | MS.gene38292:intron | 25.0% |
! | ATTGATATTGCAAACATATG+CGG | - | chr4.3:86765553-86765572 | None:intergenic | 25.0% |
! | CCTAATAAAATTGTTTGATC+AGG | - | chr4.3:86766452-86766471 | None:intergenic | 25.0% |
! | CTTATTTGTGGAATATTTGA+AGG | + | chr4.3:86768367-86768386 | MS.gene38292:CDS | 25.0% |
! | GAATATTTGAAGGTGAATAA+TGG | + | chr4.3:86768377-86768396 | MS.gene38292:intron | 25.0% |
! | GTCAAACAAAGTTTATGTAT+TGG | + | chr4.3:86766310-86766329 | MS.gene38292:intron | 25.0% |
! | TACAGTAAGTAAATTGAAGA+AGG | + | chr4.3:86767968-86767987 | MS.gene38292:CDS | 25.0% |
! | TAGTGTCATCATAATATAAC+AGG | + | chr4.3:86767090-86767109 | MS.gene38292:intron | 25.0% |
! | TCAAACAAAGTAGATTTATC+TGG | - | chr4.3:86766350-86766369 | None:intergenic | 25.0% |
! | TCAGAATCAAAATGATTACA+AGG | + | chr4.3:86768493-86768512 | MS.gene38292:intron | 25.0% |
! | TGAAGTGGTTAACAATTTAT+TGG | - | chr4.3:86768779-86768798 | None:intergenic | 25.0% |
! | TGATAGAGAAAAGAAATAGA+TGG | + | chr4.3:86766825-86766844 | MS.gene38292:intron | 25.0% |
! | TGTTATAATTCTGTTAGGTT+TGG | + | chr4.3:86765165-86765184 | MS.gene38292:intron | 25.0% |
! | TTAAACTGAGAAAACATCAA+TGG | - | chr4.3:86765933-86765952 | None:intergenic | 25.0% |
! | TTAGATAGGATTTGAACATT+TGG | + | chr4.3:86766972-86766991 | MS.gene38292:intron | 25.0% |
! | TTGTCAAATAGAAGTTATAG+CGG | - | chr4.3:86766195-86766214 | None:intergenic | 25.0% |
!! | CCTGATCAAACAATTTTATT+AGG | + | chr4.3:86766449-86766468 | MS.gene38292:intron | 25.0% |
!! | CTATTTTATTCATATGCCAA+TGG | + | chr4.3:86765824-86765843 | MS.gene38292:CDS | 25.0% |
!! | TAATTCTAGAAAGTGATACT+TGG | + | chr4.3:86767152-86767171 | MS.gene38292:intron | 25.0% |
!! | TATATATTTTATAGGACGAG+TGG | + | chr4.3:86767916-86767935 | MS.gene38292:intron | 25.0% |
!! | TTCATTTTCCTGTTACATTT+AGG | - | chr4.3:86767411-86767430 | None:intergenic | 25.0% |
!!! | AGAAATAGATGGATTGAAAA+AGG | + | chr4.3:86766836-86766855 | MS.gene38292:intron | 25.0% |
!!! | GAAATTGGTCTTTTTTAGAT+AGG | + | chr4.3:86766958-86766977 | MS.gene38292:intron | 25.0% |
!!! | GAATTACTTTCTCTTGTTTT+GGG | + | chr4.3:86768320-86768339 | MS.gene38292:CDS | 25.0% |
!!! | TCTTTTTTGTTGGTTTATTG+TGG | + | chr4.3:86765645-86765664 | MS.gene38292:intron | 25.0% |
!!! | TGAATTACTTTCTCTTGTTT+TGG | + | chr4.3:86768319-86768338 | MS.gene38292:CDS | 25.0% |
!!! | TTTTTTGTTATATTCGAGAC+CGG | + | chr4.3:86766377-86766396 | MS.gene38292:intron | 25.0% |
!!! | TTTTTTTCCAATTTTACCAG+AGG | + | chr4.3:86768262-86768281 | MS.gene38292:intron | 25.0% |
AAAAAGAGGCAAGAATAAAC+AGG | - | chr4.3:86765632-86765651 | None:intergenic | 30.0% | |
AACTTTGACATCTAATGTGA+AGG | + | chr4.3:86768101-86768120 | MS.gene38292:intron | 30.0% | |
AATCTTGGACATTGATGTAT+AGG | + | chr4.3:86765959-86765978 | MS.gene38292:intron | 30.0% | |
AATGCCTGTTAGAAATTGTT+TGG | + | chr4.3:86766933-86766952 | MS.gene38292:intron | 30.0% | |
ACATGATAATTTACGTACCA+CGG | - | chr4.3:86767457-86767476 | None:intergenic | 30.0% | |
ACGAAATTATCCAGGATTAA+AGG | - | chr4.3:86768873-86768892 | None:intergenic | 30.0% | |
AGAAATTGTTTGGTCGAAAT+TGG | + | chr4.3:86766943-86766962 | MS.gene38292:intron | 30.0% | |
ATAAGGATGGGAAAGAAATA+TGG | - | chr4.3:86767876-86767895 | None:intergenic | 30.0% | |
ATAATATGAGTCATGCATTG+TGG | - | chr4.3:86767573-86767592 | None:intergenic | 30.0% | |
ATCTTGGACATTGATGTATA+GGG | + | chr4.3:86765960-86765979 | MS.gene38292:intron | 30.0% | |
ATGATAGAGAAGACATATGA+AGG | - | chr4.3:86766517-86766536 | None:intergenic | 30.0% | |
ATTCTGTTAGGTTTGGAAAT+TGG | + | chr4.3:86765172-86765191 | MS.gene38292:intron | 30.0% | |
GAACATAAGTTAAGTTCCAT+AGG | - | chr4.3:86767757-86767776 | None:intergenic | 30.0% | |
GCGGTTTCTTTAATTAAATG+AGG | + | chr4.3:86766718-86766737 | MS.gene38292:intron | 30.0% | |
GTTGGATGTTCTAATTGTAT+GGG | + | chr4.3:86765741-86765760 | MS.gene38292:intron | 30.0% | |
GTTTACCAGTTAGACAATAT+TGG | - | chr4.3:86768170-86768189 | None:intergenic | 30.0% | |
TAACAGGAAAATGAAATCTG+AGG | + | chr4.3:86767416-86767435 | MS.gene38292:intron | 30.0% | |
TAATCAAGCCTAAATGTAAC+AGG | + | chr4.3:86767400-86767419 | MS.gene38292:intron | 30.0% | |
TCAATGTTTGTCATGTGTTT+GGG | + | chr4.3:86767033-86767052 | MS.gene38292:intron | 30.0% | |
TCATATGTCTTCTCTATCAT+GGG | + | chr4.3:86766517-86766536 | MS.gene38292:intron | 30.0% | |
TGTTGGATGTTCTAATTGTA+TGG | + | chr4.3:86765740-86765759 | MS.gene38292:intron | 30.0% | |
TTAAGTGATACTCTTCAAGA+TGG | + | chr4.3:86768024-86768043 | MS.gene38292:intron | 30.0% | |
TTCAATGTTTGTCATGTGTT+TGG | + | chr4.3:86767032-86767051 | MS.gene38292:intron | 30.0% | |
TTCATATGTCTTCTCTATCA+TGG | + | chr4.3:86766516-86766535 | MS.gene38292:intron | 30.0% | |
TTCTAACAGGCATTATGATA+GGG | - | chr4.3:86766927-86766946 | None:intergenic | 30.0% | |
TTCTGTTAGGTTTGGAAATT+GGG | + | chr4.3:86765173-86765192 | MS.gene38292:intron | 30.0% | |
TTTCTAACAGGCATTATGAT+AGG | - | chr4.3:86766928-86766947 | None:intergenic | 30.0% | |
! | TGTTTTGCACTTCTTATTGA+GGG | + | chr4.3:86766770-86766789 | MS.gene38292:intron | 30.0% |
!! | TTGTTTTGCACTTCTTATTG+AGG | + | chr4.3:86766769-86766788 | MS.gene38292:intron | 30.0% |
!!! | GTATTTTGAAGCATATGTGT+TGG | + | chr4.3:86765590-86765609 | MS.gene38292:intron | 30.0% |
!!! | TATTCTTGCCTCTTTTTTGT+TGG | + | chr4.3:86765635-86765654 | MS.gene38292:intron | 30.0% |
AAAATGAAATCTGAGGAGCA+AGG | + | chr4.3:86767423-86767442 | MS.gene38292:CDS | 35.0% | |
AAGAGCAAAATTAACCAAGG+AGG | - | chr4.3:86764952-86764971 | None:intergenic | 35.0% | |
ACCATTCAACGAAATTATCC+AGG | - | chr4.3:86768881-86768900 | None:intergenic | 35.0% | |
ACCTATGCATTCATCTCTTA+TGG | + | chr4.3:86768678-86768697 | MS.gene38292:intron | 35.0% | |
ATAGAGAAGACATATGAAGG+TGG | - | chr4.3:86766514-86766533 | None:intergenic | 35.0% | |
CACACTCTTGGCAATAATTA+AGG | - | chr4.3:86767628-86767647 | None:intergenic | 35.0% | |
GAAAGTGATACTTGGTATGT+AGG | + | chr4.3:86767160-86767179 | MS.gene38292:intron | 35.0% | |
GCTTTCCAATATTGTCTAAC+TGG | + | chr4.3:86768162-86768181 | MS.gene38292:CDS | 35.0% | |
TAAAGCAAACTCAAAGGAAC+TGG | + | chr4.3:86765787-86765806 | MS.gene38292:CDS | 35.0% | |
TATATTTGTCGTGTTGTGGT+TGG | + | chr4.3:86767713-86767732 | MS.gene38292:intron | 35.0% | |
TCCACTACGTTATACTATTC+CGG | + | chr4.3:86766266-86766285 | MS.gene38292:intron | 35.0% | |
TCCTGGATAATTTCGTTGAA+TGG | + | chr4.3:86768877-86768896 | MS.gene38292:CDS | 35.0% | |
TCGACCAAACAATTTCTAAC+AGG | - | chr4.3:86766940-86766959 | None:intergenic | 35.0% | |
TCTAATGGGAATGCTTTAGT+GGG | - | chr4.3:86766878-86766897 | None:intergenic | 35.0% | |
TCTGTTAGGTTTGGAAATTG+GGG | + | chr4.3:86765174-86765193 | MS.gene38292:intron | 35.0% | |
TGATTACAAGGTCGTAAACA+TGG | + | chr4.3:86768505-86768524 | MS.gene38292:CDS | 35.0% | |
TGGTATCATGTTTATGCTGT+TGG | + | chr4.3:86765665-86765684 | MS.gene38292:intron | 35.0% | |
TGTTTCTCCTCTGGTAAAAT+TGG | - | chr4.3:86768272-86768291 | None:intergenic | 35.0% | |
TTCGAGTAAAGCAAACTCAA+AGG | + | chr4.3:86765781-86765800 | MS.gene38292:CDS | 35.0% | |
TTGGAGTGGTATTTAACTGT+TGG | + | chr4.3:86765723-86765742 | MS.gene38292:intron | 35.0% | |
! | AAAGTGCTTCAATTCCTTCT+GGG | - | chr4.3:86767265-86767284 | None:intergenic | 35.0% |
! | ATATTTTATAGGACGAGTGG+AGG | + | chr4.3:86767919-86767938 | MS.gene38292:intron | 35.0% |
! | GTAATCATACCTCCTTTTCT+AGG | - | chr4.3:86768004-86768023 | None:intergenic | 35.0% |
! | TAATTTTGTTACAGCCCAGA+AGG | + | chr4.3:86767248-86767267 | MS.gene38292:intron | 35.0% |
! | TTAACAGAATCGAAGAGTAC+CGG | - | chr4.3:86764928-86764947 | None:intergenic | 35.0% |
! | TTTATCTCACTGTTTGGTGA+AGG | + | chr4.3:86767592-86767611 | MS.gene38292:intron | 35.0% |
!! | ATATTGGACTAGTATCTGCA+AGG | + | chr4.3:86765695-86765714 | MS.gene38292:intron | 35.0% |
!! | TAGTATCTGCAAGGTACTTT+TGG | + | chr4.3:86765704-86765723 | MS.gene38292:intron | 35.0% |
ACCGGAATAGTATAACGTAG+TGG | - | chr4.3:86766270-86766289 | None:intergenic | 40.0% | |
AGCTCAAGTCAGCTTATTTG+TGG | + | chr4.3:86768355-86768374 | MS.gene38292:CDS | 40.0% | |
AGTGATACTTGGTATGTAGG+TGG | + | chr4.3:86767163-86767182 | MS.gene38292:intron | 40.0% | |
ATCACGACAAGGATTGTTTG+GGG | - | chr4.3:86766118-86766137 | None:intergenic | 40.0% | |
ATGTGTTTGGGAGAGACTTA+AGG | + | chr4.3:86767045-86767064 | MS.gene38292:intron | 40.0% | |
CATGTTCATGATGTTGGCAA+TGG | + | chr4.3:86766543-86766562 | MS.gene38292:intron | 40.0% | |
CGTTTGATCAACCTCAATTG+CGG | + | chr4.3:86765463-86765482 | MS.gene38292:intron | 40.0% | |
CTGTTAGGTTTGGAAATTGG+GGG | + | chr4.3:86765175-86765194 | MS.gene38292:intron | 40.0% | |
GATCACGACAAGGATTGTTT+GGG | - | chr4.3:86766119-86766138 | None:intergenic | 40.0% | |
GCAAACTTACTCAATCAACC+CGG | - | chr4.3:86765855-86765874 | None:intergenic | 40.0% | |
GCCATAAGAGATGAATGCAT+AGG | - | chr4.3:86768682-86768701 | None:intergenic | 40.0% | |
GGAACTAAGTACAGTTCCAT+AGG | + | chr4.3:86767525-86767544 | MS.gene38292:intron | 40.0% | |
GGGTATCATGTTCATGATGT+TGG | + | chr4.3:86766537-86766556 | MS.gene38292:intron | 40.0% | |
GTAAACATGGATCAGTGGAT+GGG | + | chr4.3:86768518-86768537 | MS.gene38292:CDS | 40.0% | |
GTAGGGCAAAAAGAAACTGA+AGG | - | chr4.3:86766094-86766113 | None:intergenic | 40.0% | |
GTCTAATGGGAATGCTTTAG+TGG | - | chr4.3:86766879-86766898 | None:intergenic | 40.0% | |
TATGAGTCATGCATTGTGGT+CGG | - | chr4.3:86767569-86767588 | None:intergenic | 40.0% | |
TCATATGCCAATGGATCTTC+CGG | + | chr4.3:86765833-86765852 | MS.gene38292:CDS | 40.0% | |
TCGATTCTGTTAAACCTCCT+TGG | + | chr4.3:86764935-86764954 | MS.gene38292:intron | 40.0% | |
TGAAAACACTGATCACGACA+AGG | - | chr4.3:86766129-86766148 | None:intergenic | 40.0% | |
TGACATCTAATGTGAAGGTC+CGG | + | chr4.3:86768106-86768125 | MS.gene38292:intron | 40.0% | |
TGATCACGACAAGGATTGTT+TGG | - | chr4.3:86766120-86766139 | None:intergenic | 40.0% | |
TGCATGGCAGAACAATATAG+TGG | + | chr4.3:86766232-86766251 | MS.gene38292:intron | 40.0% | |
TGCTGTTGGTCAAACGATAT+TGG | + | chr4.3:86765679-86765698 | MS.gene38292:intron | 40.0% | |
TGTATAAGTGAGCAGAAGCT+TGG | + | chr4.3:86767003-86767022 | MS.gene38292:intron | 40.0% | |
TGTTAGGTTTGGAAATTGGG+GGG | + | chr4.3:86765176-86765195 | MS.gene38292:intron | 40.0% | |
TGTTTACCTCGTTGCAAAAC+CGG | - | chr4.3:86768550-86768569 | None:intergenic | 40.0% | |
TTGTTATATTCGAGACCGGA+GGG | + | chr4.3:86766381-86766400 | MS.gene38292:intron | 40.0% | |
TTTGGAAATTGGGGGGTAAT+TGG | + | chr4.3:86765183-86765202 | MS.gene38292:intron | 40.0% | |
! | ATCAGTGGATGGGATTTTTC+CGG | + | chr4.3:86768528-86768547 | MS.gene38292:CDS | 40.0% |
! | ATTTTTCCGGTTTTGCAACG+AGG | + | chr4.3:86768541-86768560 | MS.gene38292:CDS | 40.0% |
! | CAAAGTGCTTCAATTCCTTC+TGG | - | chr4.3:86767266-86767285 | None:intergenic | 40.0% |
! | GCTATGCAATCATGCAGTTT+TGG | + | chr4.3:86767848-86767867 | MS.gene38292:intron | 40.0% |
! | TGAAGCACTTTGTGCTGATA+TGG | + | chr4.3:86767274-86767293 | MS.gene38292:CDS | 40.0% |
! | TTTGTTATATTCGAGACCGG+AGG | + | chr4.3:86766380-86766399 | MS.gene38292:intron | 40.0% |
!! | AAACTGAAGGCATCAATCTG+TGG | - | chr4.3:86766081-86766100 | None:intergenic | 40.0% |
!! | AACTGAAGGCATCAATCTGT+GGG | - | chr4.3:86766080-86766099 | None:intergenic | 40.0% |
!! | ACAAATAAGCTGACTTGAGC+TGG | - | chr4.3:86768356-86768375 | None:intergenic | 40.0% |
!! | AGGTGGATCATACTGATTTG+AGG | + | chr4.3:86767297-86767316 | MS.gene38292:CDS | 40.0% |
!! | ATGCTTTTCTGTTTCTCCTC+TGG | - | chr4.3:86768281-86768300 | None:intergenic | 40.0% |
!! | GAGAGGCTTAAAAGCACTAA+GGG | + | chr4.3:86767941-86767960 | MS.gene38292:CDS | 40.0% |
AATCAACCCGGAAGATCCAT+TGG | - | chr4.3:86765843-86765862 | None:intergenic | 45.0% | |
ACAGACAGCCACATATGTTC+CGG | + | chr4.3:86766480-86766499 | MS.gene38292:intron | 45.0% | |
ACAGTTCCATAGGTCCTGTA+CGG | + | chr4.3:86767535-86767554 | MS.gene38292:intron | 45.0% | |
ACGCGCTGCTTCAAAGAAAA+CGG | + | chr4.3:86764860-86764879 | MS.gene38292:CDS | 45.0% | |
ACTACCAGACCTAGAAAAGG+AGG | + | chr4.3:86767992-86768011 | MS.gene38292:CDS | 45.0% | |
ACTTAAGGTTGTTGTGGCTG+AGG | + | chr4.3:86767060-86767079 | MS.gene38292:intron | 45.0% | |
AGGTCGTAAACATGGATCAG+TGG | + | chr4.3:86768513-86768532 | MS.gene38292:CDS | 45.0% | |
AGTGCTGCATTTCACACTCT+TGG | - | chr4.3:86767640-86767659 | None:intergenic | 45.0% | |
ATCAATCTGTGGGAAGTGAG+GGG | - | chr4.3:86766070-86766089 | None:intergenic | 45.0% | |
ATTAAAGAAACCGCCACCCA+TGG | - | chr4.3:86766712-86766731 | None:intergenic | 45.0% | |
ATTAAAGGCCACGCAAGTTC+GGG | - | chr4.3:86768858-86768877 | None:intergenic | 45.0% | |
ATTTGTCGTGTTGTGGTTGG+AGG | + | chr4.3:86767716-86767735 | MS.gene38292:intron | 45.0% | |
CAGCAAAGAAGATGAGAAGC+GGG | - | chr4.3:86766661-86766680 | None:intergenic | 45.0% | |
CATATGCCAATGGATCTTCC+GGG | + | chr4.3:86765834-86765853 | MS.gene38292:CDS | 45.0% | |
CATATGCCTCTTAAACCTCG+AGG | - | chr4.3:86765495-86765514 | None:intergenic | 45.0% | |
CATCAATCTGTGGGAAGTGA+GGG | - | chr4.3:86766071-86766090 | None:intergenic | 45.0% | |
CCTCTTAAACCTCGAGGTTA+CGG | - | chr4.3:86765489-86765508 | None:intergenic | 45.0% | |
CGTAAACATGGATCAGTGGA+TGG | + | chr4.3:86768517-86768536 | MS.gene38292:CDS | 45.0% | |
CTGAAAAATTTGACGGCCTC+CGG | - | chr4.3:86768128-86768147 | None:intergenic | 45.0% | |
CTGTCAAACCGGAACATATG+TGG | - | chr4.3:86766491-86766510 | None:intergenic | 45.0% | |
GATTAAAGGCCACGCAAGTT+CGG | - | chr4.3:86768859-86768878 | None:intergenic | 45.0% | |
GCAGCAAAGAAGATGAGAAG+CGG | - | chr4.3:86766662-86766681 | None:intergenic | 45.0% | |
GGAGAGACTTAAGGTTGTTG+TGG | + | chr4.3:86767054-86767073 | MS.gene38292:intron | 45.0% | |
GGTGTTTCCTTCACACAATG+CGG | - | chr4.3:86766603-86766622 | None:intergenic | 45.0% | |
GTGAAGGAAACACCCTATGA+TGG | + | chr4.3:86766609-86766628 | MS.gene38292:intron | 45.0% | |
TATGAAGGTGGCTGTCAAAC+CGG | - | chr4.3:86766502-86766521 | None:intergenic | 45.0% | |
TCACGACAAGGATTGTTTGG+GGG | - | chr4.3:86766117-86766136 | None:intergenic | 45.0% | |
TCCCATTAGACCCAACAACA+GGG | + | chr4.3:86766888-86766907 | MS.gene38292:intron | 45.0% | |
TGGACATATGCCCTGTTGTT+GGG | - | chr4.3:86766901-86766920 | None:intergenic | 45.0% | |
TTAAAGAAACCGCCACCCAT+GGG | - | chr4.3:86766711-86766730 | None:intergenic | 45.0% | |
TTCCCATTAGACCCAACAAC+AGG | + | chr4.3:86766887-86766906 | MS.gene38292:intron | 45.0% | |
! | ACTTTGTGCTGATATGGAGG+TGG | + | chr4.3:86767280-86767299 | MS.gene38292:CDS | 45.0% |
! | AGCACTTTGTGCTGATATGG+AGG | + | chr4.3:86767277-86767296 | MS.gene38292:CDS | 45.0% |
! | CATACCTCCTTTTCTAGGTC+TGG | - | chr4.3:86767999-86768018 | None:intergenic | 45.0% |
! | CATTTTCCTGTCCATCCCAT+GGG | + | chr4.3:86766693-86766712 | MS.gene38292:intron | 45.0% |
! | GGAGCAAGGATATTTTACCG+TGG | + | chr4.3:86767437-86767456 | MS.gene38292:CDS | 45.0% |
! | TCATTTTCCTGTCCATCCCA+TGG | + | chr4.3:86766692-86766711 | MS.gene38292:intron | 45.0% |
!! | GGAGAGGCTTAAAAGCACTA+AGG | + | chr4.3:86767940-86767959 | MS.gene38292:CDS | 45.0% |
!! | TCTGCAAGGTACTTTTGGAG+TGG | + | chr4.3:86765709-86765728 | MS.gene38292:intron | 45.0% |
!! | TGAGGATTTTGATGCTTGCG+TGG | + | chr4.3:86767315-86767334 | MS.gene38292:CDS | 45.0% |
!! | AACAAAATAAATATTAAAAT+AGG | - | chr4.3:86766754-86766773 | None:intergenic | 5.0% |
AACCTTCCGTACAGGACCTA+TGG | - | chr4.3:86767544-86767563 | None:intergenic | 50.0% | |
ACAAGGATTGTTTGGGGGGT+AGG | - | chr4.3:86766112-86766131 | None:intergenic | 50.0% | |
ACTTGCGTGGCCTTTAATCC+TGG | + | chr4.3:86768860-86768879 | MS.gene38292:CDS | 50.0% | |
AGTGAGGGGAATACATGGCA+AGG | - | chr4.3:86766056-86766075 | None:intergenic | 50.0% | |
CAAGGATTGTTTGGGGGGTA+GGG | - | chr4.3:86766111-86766130 | None:intergenic | 50.0% | |
CACGACAAGGATTGTTTGGG+GGG | - | chr4.3:86766116-86766135 | None:intergenic | 50.0% | |
CAGGCATTATGATAGGGTGC+TGG | - | chr4.3:86766921-86766940 | None:intergenic | 50.0% | |
CATCTAATGTGAAGGTCCGG+AGG | + | chr4.3:86768109-86768128 | MS.gene38292:intron | 50.0% | |
CCGTAACCTCGAGGTTTAAG+AGG | + | chr4.3:86765486-86765505 | MS.gene38292:intron | 50.0% | |
CGCGCTGCTTCAAAGAAAAC+GGG | + | chr4.3:86764861-86764880 | MS.gene38292:CDS | 50.0% | |
CTGGACATATGCCCTGTTGT+TGG | - | chr4.3:86766902-86766921 | None:intergenic | 50.0% | |
GACAGCAAGGTTAGGACCTA+TGG | + | chr4.3:86767738-86767757 | MS.gene38292:intron | 50.0% | |
GCAAACATATGCGGTCGACA+TGG | - | chr4.3:86765544-86765563 | None:intergenic | 50.0% | |
GCATCAATCTGTGGGAAGTG+AGG | - | chr4.3:86766072-86766091 | None:intergenic | 50.0% | |
GCCCTGTTGTTGGGTCTAAT+GGG | - | chr4.3:86766892-86766911 | None:intergenic | 50.0% | |
GGCACTACCAGACCTAGAAA+AGG | + | chr4.3:86767989-86768008 | MS.gene38292:CDS | 50.0% | |
GTTGGCAATGGACACTCATC+TGG | + | chr4.3:86766555-86766574 | MS.gene38292:intron | 50.0% | |
TCAACAGCCGCATTGTGTGA+AGG | + | chr4.3:86766593-86766612 | MS.gene38292:intron | 50.0% | |
TCACACAATGCGGCTGTTGA+TGG | - | chr4.3:86766593-86766612 | None:intergenic | 50.0% | |
TGCCCTGTTGTTGGGTCTAA+TGG | - | chr4.3:86766893-86766912 | None:intergenic | 50.0% | |
TGGGAAGTGAGGGGAATACA+TGG | - | chr4.3:86766061-86766080 | None:intergenic | 50.0% | |
TTATAGGACGAGTGGAGGAG+AGG | + | chr4.3:86767924-86767943 | MS.gene38292:intron | 50.0% | |
TTCCATAGGTCCTGTACGGA+AGG | + | chr4.3:86767539-86767558 | MS.gene38292:intron | 50.0% | |
TTGGGGGGTAATTGGTGAGA+TGG | + | chr4.3:86765191-86765210 | MS.gene38292:intron | 50.0% | |
! | AACACCCTATGATGGTGCTC+TGG | + | chr4.3:86766617-86766636 | MS.gene38292:intron | 50.0% |
! | AAGCATCGTGACCGCAATTG+AGG | + | chr4.3:86765518-86765537 | MS.gene38292:intron | 50.0% |
!! | AGAATCGAAGAGTACCGGAG+CGG | - | chr4.3:86764923-86764942 | None:intergenic | 50.0% |
!! | AGTGAGCAGAAGCTTGGTGT+TGG | + | chr4.3:86767009-86767028 | MS.gene38292:intron | 50.0% |
AGCGGCGGAAGGATTGGAAT+TGG | - | chr4.3:86764892-86764911 | None:intergenic | 55.0% | |
GGTCGACATGGCCTCAATTG+CGG | - | chr4.3:86765532-86765551 | None:intergenic | 55.0% | |
GGTTGGAGGACAGCAAGGTT+AGG | + | chr4.3:86767730-86767749 | MS.gene38292:intron | 55.0% | |
GTTGTGGTTGGAGGACAGCA+AGG | + | chr4.3:86767725-86767744 | MS.gene38292:intron | 55.0% | |
TGCTACAGCGTTACTCCCTC+CGG | - | chr4.3:86766399-86766418 | None:intergenic | 55.0% | |
TTTCCTGTCCATCCCATGGG+TGG | + | chr4.3:86766696-86766715 | MS.gene38292:intron | 55.0% | |
! | AAGCGGGCATTGCAAGAGAC+GGG | - | chr4.3:86766645-86766664 | None:intergenic | 55.0% |
! | GAAGCGGGCATTGCAAGAGA+CGG | - | chr4.3:86766646-86766665 | None:intergenic | 55.0% |
! | GGAGCCAGAGCACCATCATA+GGG | - | chr4.3:86766624-86766643 | None:intergenic | 55.0% |
ACCGGAGCGGAAGAGATCAG+CGG | - | chr4.3:86764910-86764929 | None:intergenic | 60.0% | |
AGAAACCGCCACCCATGGGA+TGG | - | chr4.3:86766707-86766726 | None:intergenic | 60.0% | |
CAATTGCGGCCGTAACCTCG+AGG | + | chr4.3:86765477-86765496 | MS.gene38292:intron | 60.0% | |
CGAGGTTACGGCCGCAATTG+AGG | - | chr4.3:86765477-86765496 | None:intergenic | 60.0% | |
GAGATCAGCGGCGGAAGGAT+TGG | - | chr4.3:86764898-86764917 | None:intergenic | 60.0% | |
GGTCGGAGAACCTTCCGTAC+AGG | - | chr4.3:86767552-86767571 | None:intergenic | 60.0% | |
GGTTGTTGTGGCTGAGGCAG+AGG | + | chr4.3:86767066-86767085 | MS.gene38292:intron | 60.0% | |
! | GGGAGCCAGAGCACCATCAT+AGG | - | chr4.3:86766625-86766644 | None:intergenic | 60.0% |
CCTGTCCATCCCATGGGTGG+CGG | + | chr4.3:86766699-86766718 | MS.gene38292:intron | 65.0% | |
CGGAAGAGATCAGCGGCGGA+AGG | - | chr4.3:86764903-86764922 | None:intergenic | 65.0% | |
GCCGCTGATCTCTTCCGCTC+CGG | + | chr4.3:86764906-86764925 | MS.gene38292:CDS | 65.0% | |
GGAGCGGAAGAGATCAGCGG+CGG | - | chr4.3:86764907-86764926 | None:intergenic | 65.0% | |
CCGCCACCCATGGGATGGAC+AGG | - | chr4.3:86766702-86766721 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 86764855 | 86768923 | 86764855 | ID=MS.gene38292 |
chr4.3 | mRNA | 86764855 | 86768923 | 86764855 | ID=MS.gene38292.t1;Parent=MS.gene38292 |
chr4.3 | exon | 86764855 | 86764927 | 86764855 | ID=MS.gene38292.t1.exon1;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86764855 | 86764927 | 86764855 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
chr4.3 | exon | 86765780 | 86765864 | 86765780 | ID=MS.gene38292.t1.exon2;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86765780 | 86765864 | 86765780 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
chr4.3 | exon | 86767262 | 86767336 | 86767262 | ID=MS.gene38292.t1.exon3;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86767262 | 86767336 | 86767262 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
chr4.3 | exon | 86767422 | 86767458 | 86767422 | ID=MS.gene38292.t1.exon4;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86767422 | 86767458 | 86767422 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
chr4.3 | exon | 86767930 | 86768013 | 86767930 | ID=MS.gene38292.t1.exon5;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86767930 | 86768013 | 86767930 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
chr4.3 | exon | 86768123 | 86768183 | 86768123 | ID=MS.gene38292.t1.exon6;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86768123 | 86768183 | 86768123 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
chr4.3 | exon | 86768282 | 86768388 | 86768282 | ID=MS.gene38292.t1.exon7;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86768282 | 86768388 | 86768282 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
chr4.3 | exon | 86768497 | 86768562 | 86768497 | ID=MS.gene38292.t1.exon8;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86768497 | 86768562 | 86768497 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
chr4.3 | exon | 86768825 | 86768923 | 86768825 | ID=MS.gene38292.t1.exon9;Parent=MS.gene38292.t1 |
chr4.3 | CDS | 86768825 | 86768923 | 86768825 | ID=cds.MS.gene38292.t1;Parent=MS.gene38292.t1 |
Gene Sequence |
Protein sequence |