Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04021.t1 | XP_024635477.1 | 94.6 | 514 | 27 | 1 | 1 | 514 | 1 | 513 | 2.20E-212 | 748.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04021.t1 | A0A072UXC0 | 94.6 | 514 | 27 | 1 | 1 | 514 | 1 | 513 | 1.6e-212 | 748.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04021 | MS.gene04542 | PPI |
| MS.gene04021 | MS.gene05569 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04021.t1 | MTR_3g463450 | 96.498 | 514 | 17 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1016 |
| MS.gene04021.t1 | MTR_5g082130 | 49.057 | 159 | 73 | 2 | 359 | 509 | 252 | 410 | 5.24e-44 | 160 |
| MS.gene04021.t1 | MTR_5g082130 | 50.746 | 134 | 59 | 2 | 141 | 267 | 90 | 223 | 1.14e-33 | 132 |
| MS.gene04021.t1 | MTR_2g103795 | 41.837 | 98 | 57 | 0 | 400 | 497 | 139 | 236 | 8.51e-19 | 87.0 |
| MS.gene04021.t1 | MTR_4g114690 | 40.206 | 97 | 58 | 0 | 400 | 496 | 162 | 258 | 1.67e-17 | 83.6 |
| MS.gene04021.t1 | MTR_7g099260 | 36.283 | 113 | 65 | 1 | 401 | 506 | 238 | 350 | 3.51e-17 | 83.6 |
| MS.gene04021.t1 | MTR_7g098450 | 38.776 | 98 | 60 | 0 | 401 | 498 | 227 | 324 | 1.33e-16 | 81.6 |
| MS.gene04021.t1 | MTR_7g098450 | 38.776 | 98 | 60 | 0 | 401 | 498 | 250 | 347 | 1.37e-16 | 82.0 |
| MS.gene04021.t1 | MTR_4g010250 | 35.577 | 104 | 67 | 0 | 399 | 502 | 123 | 226 | 1.63e-16 | 79.7 |
| MS.gene04021.t1 | MTR_5g029910 | 37.634 | 93 | 58 | 0 | 404 | 496 | 126 | 218 | 3.57e-15 | 75.9 |
| MS.gene04021.t1 | MTR_1g073230 | 27.922 | 154 | 103 | 1 | 358 | 503 | 223 | 376 | 1.39e-13 | 72.8 |
| MS.gene04021.t1 | MTR_2g103795 | 40.000 | 85 | 51 | 0 | 400 | 484 | 139 | 223 | 2.02e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04021.t1 | AT1G07280 | 54.128 | 545 | 200 | 16 | 8 | 513 | 15 | 548 | 1.34e-178 | 513 |
| MS.gene04021.t1 | AT1G07280 | 54.128 | 545 | 200 | 16 | 8 | 513 | 15 | 548 | 1.34e-178 | 513 |
| MS.gene04021.t1 | AT1G07280 | 54.128 | 545 | 200 | 16 | 8 | 513 | 15 | 548 | 1.34e-178 | 513 |
| MS.gene04021.t1 | AT2G29670 | 50.709 | 564 | 196 | 18 | 1 | 513 | 1 | 533 | 1.13e-159 | 464 |
| MS.gene04021.t1 | AT2G29670 | 50.709 | 564 | 196 | 18 | 1 | 513 | 1 | 533 | 1.13e-159 | 464 |
| MS.gene04021.t1 | AT1G07280 | 50.318 | 471 | 178 | 16 | 8 | 436 | 15 | 471 | 8.94e-128 | 382 |
| MS.gene04021.t1 | AT3G47080 | 42.569 | 545 | 226 | 15 | 10 | 514 | 17 | 514 | 6.12e-125 | 375 |
| MS.gene04021.t1 | AT5G20190 | 38.776 | 98 | 60 | 0 | 400 | 497 | 156 | 253 | 7.33e-17 | 81.6 |
| MS.gene04021.t1 | AT4G17940 | 39.785 | 93 | 56 | 0 | 404 | 496 | 154 | 246 | 7.41e-17 | 81.3 |
| MS.gene04021.t1 | AT1G80130 | 35.052 | 97 | 63 | 0 | 400 | 496 | 165 | 261 | 1.66e-11 | 65.9 |
| MS.gene04021.t1 | AT4G32340 | 35.789 | 95 | 60 | 1 | 404 | 497 | 114 | 208 | 2.80e-11 | 64.3 |
Find 93 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGAATTTGTTTCGTGATT+TGG | 0.185372 | 3.3:+50860369 | None:intergenic |
| TTCACATACACCAACGTTAA+TGG | 0.200607 | 3.3:-50859744 | MS.gene04021:CDS |
| AAACAATGCAATTATGGATT+TGG | 0.264253 | 3.3:-50860137 | MS.gene04021:CDS |
| AAACGAAAACAATGCAATTA+TGG | 0.270323 | 3.3:-50860143 | MS.gene04021:CDS |
| TCTTCAGAGGTCTCGATCTT+TGG | 0.284883 | 3.3:-50860302 | MS.gene04021:CDS |
| TCTTGTTCTTCCGGTTCTTC+TGG | 0.286031 | 3.3:-50860085 | MS.gene04021:CDS |
| ATAAATACGCAACCTTCTTA+TGG | 0.292547 | 3.3:-50857848 | MS.gene04021:CDS |
| TCTTCTTCCTCTTCTTGTAT+TGG | 0.302233 | 3.3:+50860264 | None:intergenic |
| GGCCGCAGAAGAGACTTATT+TGG | 0.312086 | 3.3:-50857805 | MS.gene04021:CDS |
| ACTTCCTCTTCTTGTTCTTC+CGG | 0.317190 | 3.3:-50860094 | MS.gene04021:CDS |
| AGCATAATTTGCAGCATAAT+AGG | 0.327559 | 3.3:+50857755 | None:intergenic |
| ACAGAACTTGTTTATCAAAC+AGG | 0.336125 | 3.3:-50859266 | MS.gene04021:CDS |
| AAGAAGAAGAAACTAAGATA+TGG | 0.341917 | 3.3:-50859409 | MS.gene04021:CDS |
| AACTAAGATATGGGAATCTA+TGG | 0.346469 | 3.3:-50859399 | MS.gene04021:CDS |
| AATGGTGGTGTTTATAAAAC+CGG | 0.350156 | 3.3:-50859449 | MS.gene04021:CDS |
| TTATTATAAGCTTCAGCATC+TGG | 0.373541 | 3.3:+50857867 | None:intergenic |
| GCAAGTAACAAAGCATTGTT+TGG | 0.387537 | 3.3:+50859230 | None:intergenic |
| CGTTGTTACTTGACATAGAA+TGG | 0.397116 | 3.3:+50859687 | None:intergenic |
| TCTTCCTCTTCTTGTATTGG+TGG | 0.400469 | 3.3:+50860267 | None:intergenic |
| ATGATTATGCAGAGTATTTG+AGG | 0.411789 | 3.3:-50859289 | MS.gene04021:CDS |
| TTGTTTCGTGATTTGGATGA+TGG | 0.417401 | 3.3:+50860376 | None:intergenic |
| AGTAATACCGCCTCGGTTGA+TGG | 0.418632 | 3.3:-50859545 | MS.gene04021:CDS |
| CTCCGGTGGCTCAAAATTAA+CGG | 0.427707 | 3.3:+50860054 | None:intergenic |
| CTTCTTGTATTGGTGGAAAG+TGG | 0.431042 | 3.3:+50860274 | None:intergenic |
| TTTGACGGGGATGGACGAAC+GGG | 0.434895 | 3.3:-50859479 | MS.gene04021:CDS |
| AATGAAACAATTTGTTTCAC+CGG | 0.442034 | 3.3:-50859333 | MS.gene04021:CDS |
| AAATATAAACCGGTGGGGAG+TGG | 0.442813 | 3.3:-50859503 | MS.gene04021:CDS |
| TTCATCCACCTCAGTTTCCC+CGG | 0.445114 | 3.3:+50859430 | None:intergenic |
| AGACCTCTGAAGAACAAAAC+TGG | 0.448851 | 3.3:+50860312 | None:intergenic |
| GGCATGAGAACCAGAAGAAC+CGG | 0.459143 | 3.3:+50860075 | None:intergenic |
| TTCTTGTATTGGTGGAAAGT+GGG | 0.467059 | 3.3:+50860275 | None:intergenic |
| GATTCTTGAAAGAGTGCAAA+AGG | 0.467494 | 3.3:-50859807 | MS.gene04021:CDS |
| TTTATGATTCTCAACGAAAA+CGG | 0.486047 | 3.3:+50859986 | None:intergenic |
| GATTCAATCTTAGCAGAAAC+CGG | 0.488724 | 3.3:+50859314 | None:intergenic |
| GCCTCGGTTGATGGAGGAAG+TGG | 0.490874 | 3.3:-50859536 | MS.gene04021:CDS |
| GGGAGTGGATTTGACGGGGA+TGG | 0.504157 | 3.3:-50859488 | MS.gene04021:CDS |
| AGAAGAAGAAACTAAGATAT+GGG | 0.504906 | 3.3:-50859408 | MS.gene04021:CDS |
| ATTTGACGGGGATGGACGAA+CGG | 0.508427 | 3.3:-50859480 | MS.gene04021:CDS |
| TCTTGAGAAGAATCAGATAG+AGG | 0.509178 | 3.3:+50857693 | None:intergenic |
| TTATAGAAACGAAGAGGGAT+TGG | 0.510770 | 3.3:-50859366 | MS.gene04021:CDS |
| CGCAGAAGAGACTTATTTGG+AGG | 0.512178 | 3.3:-50857802 | MS.gene04021:CDS |
| GCAGCATAATAGGTGTTGCT+AGG | 0.514052 | 3.3:+50857765 | None:intergenic |
| AAGGAAGAATTCAGAGATGT+TGG | 0.520097 | 3.3:-50859947 | MS.gene04021:CDS |
| TCGTTGCACATGAATTTGAC+AGG | 0.520886 | 3.3:-50859184 | MS.gene04021:intron |
| CCGGTGGGGAGTGGATTTGA+CGG | 0.530493 | 3.3:-50859494 | MS.gene04021:CDS |
| TTTAGCTGCAGTTGCAACCC+CGG | 0.547576 | 3.3:-50859663 | MS.gene04021:CDS |
| AAAACGTTCTCTGTTTCAAG+TGG | 0.550122 | 3.3:-50859569 | MS.gene04021:CDS |
| CCGCGGTGGGAAATATAAAC+CGG | 0.553139 | 3.3:-50859513 | MS.gene04021:CDS |
| ATGGTGGTGTTTATAAAACC+GGG | 0.553717 | 3.3:-50859448 | MS.gene04021:CDS |
| CAGAACTTGTTTATCAAACA+GGG | 0.559981 | 3.3:-50859265 | MS.gene04021:CDS |
| GATGGAGGAAGTGGCCGCGG+TGG | 0.560003 | 3.3:-50859527 | MS.gene04021:CDS |
| CAAATCACGAAACAAATTCG+TGG | 0.561853 | 3.3:-50860368 | MS.gene04021:CDS |
| CTTTCCACCAATACAAGAAG+AGG | 0.562841 | 3.3:-50860271 | MS.gene04021:CDS |
| ATGGAGGAAGTGGCCGCGGT+GGG | 0.564800 | 3.3:-50859526 | MS.gene04021:CDS |
| ATGGGAATCTATGGTTGAAG+AGG | 0.565563 | 3.3:-50859390 | MS.gene04021:CDS |
| CTTCAAGAGAGCTATAGAAG+TGG | 0.567749 | 3.3:-50857895 | MS.gene04021:CDS |
| GTTGATGGAGGAAGTGGCCG+CGG | 0.570618 | 3.3:-50859530 | MS.gene04021:CDS |
| CGATCGAAGAAGTCTCCACC+GGG | 0.571840 | 3.3:+50859645 | None:intergenic |
| AGAACCGGAAGAACAAGAAG+AGG | 0.572363 | 3.3:+50860090 | None:intergenic |
| CGGTGGGGAGTGGATTTGAC+GGG | 0.580234 | 3.3:-50859493 | MS.gene04021:CDS |
| TTATAAGCTTCAGCATCTGG+TGG | 0.586028 | 3.3:+50857870 | None:intergenic |
| TTTCACTTTACAAATGAGAG+AGG | 0.591681 | 3.3:-50859855 | MS.gene04021:CDS |
| CCGTCAAATCCACTCCCCAC+CGG | 0.599440 | 3.3:+50859494 | None:intergenic |
| AAAACAGAAACTGAAGCTGA+AGG | 0.601124 | 3.3:-50859966 | MS.gene04021:CDS |
| ACGATCGAAGAAGTCTCCAC+CGG | 0.601465 | 3.3:+50859644 | None:intergenic |
| GGTGGATCGAAACAAATTCG+TGG | 0.602746 | 3.3:+50860333 | None:intergenic |
| AAGTGGAAGTAATACCGCCT+CGG | 0.604793 | 3.3:-50859552 | MS.gene04021:CDS |
| AAATCACGAAACAAATTCGT+GGG | 0.608197 | 3.3:-50860367 | MS.gene04021:CDS |
| TTATTTGGAGGCTATTTCAG+CGG | 0.617720 | 3.3:-50857790 | MS.gene04021:CDS |
| GAGGCTTATAGAAACGAAGA+GGG | 0.619193 | 3.3:-50859371 | MS.gene04021:CDS |
| TCTATGGAATACTGGTGGAG+AGG | 0.619309 | 3.3:-50857727 | MS.gene04021:CDS |
| TAAAACCGGGGAAACTGAGG+TGG | 0.619798 | 3.3:-50859435 | MS.gene04021:CDS |
| GCTAGTGTTTGTGATGAAGA+TGG | 0.620714 | 3.3:+50860415 | None:intergenic |
| GTGGATCGAAACAAATTCGT+GGG | 0.620906 | 3.3:+50860334 | None:intergenic |
| CGGTGGGAAATATAAACCGG+TGG | 0.621319 | 3.3:-50859510 | MS.gene04021:CDS |
| GCCACTTCCTCCATCAACCG+AGG | 0.626638 | 3.3:+50859535 | None:intergenic |
| GGTGGGAAATATAAACCGGT+GGG | 0.628312 | 3.3:-50859509 | MS.gene04021:CDS |
| AGAGGCTTATAGAAACGAAG+AGG | 0.630772 | 3.3:-50859372 | MS.gene04021:CDS |
| CCTCTGAAGAACAAAACTGG+TGG | 0.635757 | 3.3:+50860315 | None:intergenic |
| ATTATCGCTGGGATAAACTC+CGG | 0.643664 | 3.3:+50860037 | None:intergenic |
| AGCTGCAGTTGCAACCCCGG+TGG | 0.644654 | 3.3:-50859660 | MS.gene04021:CDS |
| TTATAAAACCGGGGAAACTG+AGG | 0.650462 | 3.3:-50859438 | MS.gene04021:CDS |
| ATAACATAAACCATTAACGT+TGG | 0.667251 | 3.3:+50859734 | None:intergenic |
| ATCGCTGGGATAAACTCCGG+TGG | 0.671216 | 3.3:+50860040 | None:intergenic |
| AATACCGCCTCGGTTGATGG+AGG | 0.677175 | 3.3:-50859542 | MS.gene04021:CDS |
| TGAACGAAAAGCGAACAGCG+TGG | 0.685411 | 3.3:-50860014 | MS.gene04021:CDS |
| TGGTGGTGTTTATAAAACCG+GGG | 0.688559 | 3.3:-50859447 | MS.gene04021:CDS |
| CTCCAAATAAGTCTCTTCTG+CGG | 0.688717 | 3.3:+50857803 | None:intergenic |
| ACTTCCTCCATCAACCGAGG+CGG | 0.726481 | 3.3:+50859538 | None:intergenic |
| CCGGTTTATATTTCCCACCG+CGG | 0.731142 | 3.3:+50859513 | None:intergenic |
| GTGGGAAATATAAACCGGTG+GGG | 0.746911 | 3.3:-50859508 | MS.gene04021:CDS |
| GGTGGGGAGTGGATTTGACG+GGG | 0.753129 | 3.3:-50859492 | MS.gene04021:CDS |
| GATCGAAGAAGTCTCCACCG+GGG | 0.831475 | 3.3:+50859646 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCTCTTATAATAGTAT+TGG | + | chr3.3:50859412-50859431 | None:intergenic | 15.0% |
| !!! | TTTTTTCCTTATAATAGTAT+TGG | + | chr3.3:50859445-50859464 | None:intergenic | 15.0% |
| !! | AAATCACCAATACTATTATA+AGG | - | chr3.3:50859436-50859455 | MS.gene04021:CDS | 20.0% |
| !! | AATTGAAAAATAGATGCTAT+TGG | - | chr3.3:50859280-50859299 | MS.gene04021:CDS | 20.0% |
| !! | AGCATACTATTGAAATATAT+AGG | - | chr3.3:50859247-50859266 | MS.gene04021:CDS | 20.0% |
| !! | ATGAATGAATTAACTTTACA+TGG | - | chr3.3:50859608-50859627 | MS.gene04021:CDS | 20.0% |
| !! | ATTGAAAAATAGATGCTATT+GGG | - | chr3.3:50859281-50859300 | MS.gene04021:CDS | 20.0% |
| !! | TAAAAATTGAAAAGATGCTA+TGG | + | chr3.3:50859001-50859020 | None:intergenic | 20.0% |
| !!! | AGATTTATTATGCTATTTTG+AGG | - | chr3.3:50859865-50859884 | MS.gene04021:CDS | 20.0% |
| !!! | AGTTGTATAATTGACAATTT+TGG | - | chr3.3:50860198-50860217 | MS.gene04021:CDS | 20.0% |
| !!! | ATCTGATTTTATTCCATAAT+TGG | + | chr3.3:50859849-50859868 | None:intergenic | 20.0% |
| !!! | TTTTGTATGAAGATTTACAA+GGG | - | chr3.3:50858320-50858339 | MS.gene04021:intron | 20.0% |
| !!! | TTTTTTCCTTCTTCTATTTT+TGG | + | chr3.3:50859900-50859919 | None:intergenic | 20.0% |
| ! | AAACAATGCAATTATGGATT+TGG | - | chr3.3:50858012-50858031 | MS.gene04021:intron | 25.0% |
| ! | AAACGAAAACAATGCAATTA+TGG | - | chr3.3:50858006-50858025 | MS.gene04021:intron | 25.0% |
| ! | AAGAAGAAGAAACTAAGATA+TGG | - | chr3.3:50858740-50858759 | MS.gene04021:intron | 25.0% |
| ! | AGAAGAAGAAACTAAGATAT+GGG | - | chr3.3:50858741-50858760 | MS.gene04021:intron | 25.0% |
| ! | ATAACATAAACCATTAACGT+TGG | + | chr3.3:50858418-50858437 | None:intergenic | 25.0% |
| ! | ATCTAACCAAAAATAGAAGA+AGG | - | chr3.3:50859891-50859910 | MS.gene04021:CDS | 25.0% |
| ! | TCTTGATGAATATTGAAAGA+GGG | - | chr3.3:50859936-50859955 | MS.gene04021:CDS | 25.0% |
| ! | TGTTGTTATAATCCTATTGT+TGG | - | chr3.3:50859220-50859239 | MS.gene04021:CDS | 25.0% |
| ! | TTTATGATTCTCAACGAAAA+CGG | + | chr3.3:50858166-50858185 | None:intergenic | 25.0% |
| !! | AATGAAACAATTTGTTTCAC+CGG | - | chr3.3:50858816-50858835 | MS.gene04021:intron | 25.0% |
| !! | ATTTTTCACTTTCCATAAGA+AGG | + | chr3.3:50860316-50860335 | None:intergenic | 25.0% |
| !! | CAAATTATGCTCATTTTCTA+TGG | - | chr3.3:50860406-50860425 | MS.gene04021:CDS | 25.0% |
| !! | CTCTTATAATAGTATTGGAA+GGG | + | chr3.3:50859407-50859426 | None:intergenic | 25.0% |
| !! | CTTTTGTATGAAGATTTACA+AGG | - | chr3.3:50858319-50858338 | MS.gene04021:intron | 25.0% |
| !! | GAAAGTGAAAAATGATTTGT+GGG | - | chr3.3:50860323-50860342 | MS.gene04021:CDS | 25.0% |
| !! | TCTCTTATAATAGTATTGGA+AGG | + | chr3.3:50859408-50859427 | None:intergenic | 25.0% |
| !! | TGTATGCTTTTGAATATTCA+GGG | - | chr3.3:50860221-50860240 | MS.gene04021:CDS | 25.0% |
| !!! | AATTTGCATTGGAGATTTTT+TGG | - | chr3.3:50859812-50859831 | MS.gene04021:CDS | 25.0% |
| !!! | TAGTTTGTATTTTAAGCTAC+CGG | - | chr3.3:50859771-50859790 | MS.gene04021:CDS | 25.0% |
| AAATCACGAAACAAATTCGT+GGG | - | chr3.3:50857782-50857801 | MS.gene04021:CDS | 30.0% | |
| AACTAAGATATGGGAATCTA+TGG | - | chr3.3:50858750-50858769 | MS.gene04021:intron | 30.0% | |
| ATAAATACGCAACCTTCTTA+TGG | - | chr3.3:50860301-50860320 | MS.gene04021:CDS | 30.0% | |
| ATCTAGTCAATCTTATAGAC+TGG | + | chr3.3:50859524-50859543 | None:intergenic | 30.0% | |
| ATGCACTAAACAATTTGCAT+TGG | - | chr3.3:50859801-50859820 | MS.gene04021:CDS | 30.0% | |
| CTTATGAAAAATCATGTGCT+TGG | + | chr3.3:50860099-50860118 | None:intergenic | 30.0% | |
| CTTGATGAATATTGAAAGAG+GGG | - | chr3.3:50859937-50859956 | MS.gene04021:CDS | 30.0% | |
| GGAAAGTGAAAAATGATTTG+TGG | - | chr3.3:50860322-50860341 | MS.gene04021:CDS | 30.0% | |
| GTCTTGATGAATATTGAAAG+AGG | - | chr3.3:50859935-50859954 | MS.gene04021:CDS | 30.0% | |
| GTTATAATCCTATTGTTGGT+TGG | - | chr3.3:50859224-50859243 | MS.gene04021:CDS | 30.0% | |
| TTATTATAAGCTTCAGCATC+TGG | + | chr3.3:50860285-50860304 | None:intergenic | 30.0% | |
| TTTCACTTTACAAATGAGAG+AGG | - | chr3.3:50858294-50858313 | MS.gene04021:intron | 30.0% | |
| ! | AATGGTGGTGTTTATAAAAC+CGG | - | chr3.3:50858700-50858719 | MS.gene04021:intron | 30.0% |
| ! | ACAGAACTTGTTTATCAAAC+AGG | - | chr3.3:50858883-50858902 | MS.gene04021:intron | 30.0% |
| ! | AGCATAATTTGCAGCATAAT+AGG | + | chr3.3:50860397-50860416 | None:intergenic | 30.0% |
| ! | ATGATTATGCAGAGTATTTG+AGG | - | chr3.3:50858860-50858879 | MS.gene04021:intron | 30.0% |
| ! | CAAGCACATGATTTTTCATA+AGG | - | chr3.3:50860097-50860116 | MS.gene04021:CDS | 30.0% |
| ! | CAGAACTTGTTTATCAAACA+GGG | - | chr3.3:50858884-50858903 | MS.gene04021:intron | 30.0% |
| ! | GGAGTTAAGTTTTCCAATTA+TGG | - | chr3.3:50859833-50859852 | MS.gene04021:CDS | 30.0% |
| ! | GTGTATGCTTTTGAATATTC+AGG | - | chr3.3:50860220-50860239 | MS.gene04021:CDS | 30.0% |
| ! | TTCATTTTACCTCCCAATTT+TGG | - | chr3.3:50859059-50859078 | MS.gene04021:intron | 30.0% |
| !! | CATTGTTTTCGTTTGAGATT+TGG | + | chr3.3:50858000-50858019 | None:intergenic | 30.0% |
| !! | GAAGAAAGCTTTTTCTTCTA+TGG | - | chr3.3:50858246-50858265 | MS.gene04021:intron | 30.0% |
| !!! | ATATTTTCTTTTGAGACACG+AGG | + | chr3.3:50860038-50860057 | None:intergenic | 30.0% |
| !!! | TATTTTCTTTTGAGACACGA+GGG | + | chr3.3:50860037-50860056 | None:intergenic | 30.0% |
| AAAACAGAAACTGAAGCTGA+AGG | - | chr3.3:50858183-50858202 | MS.gene04021:intron | 35.0% | |
| AAAACGTTCTCTGTTTCAAG+TGG | - | chr3.3:50858580-50858599 | MS.gene04021:intron | 35.0% | |
| AAGGAAGAATTCAGAGATGT+TGG | - | chr3.3:50858202-50858221 | MS.gene04021:intron | 35.0% | |
| AATATTGAAAGAGGGGTTTG+CGG | - | chr3.3:50859944-50859963 | MS.gene04021:CDS | 35.0% | |
| ACCAATGAAGCTACCAAAAT+TGG | + | chr3.3:50859075-50859094 | None:intergenic | 35.0% | |
| CAAATCACGAAACAAATTCG+TGG | - | chr3.3:50857781-50857800 | MS.gene04021:CDS | 35.0% | |
| CCAATGAAGCTACCAAAATT+GGG | + | chr3.3:50859074-50859093 | None:intergenic | 35.0% | |
| GATTCAATCTTAGCAGAAAC+CGG | + | chr3.3:50858838-50858857 | None:intergenic | 35.0% | |
| TCTTCTTCCTCTTCTTGTAT+TGG | + | chr3.3:50857888-50857907 | None:intergenic | 35.0% | |
| TCTTGAGAAGAATCAGATAG+AGG | + | chr3.3:50860459-50860478 | None:intergenic | 35.0% | |
| TGTTTAGTGCATCTAGAAAC+CGG | + | chr3.3:50859793-50859812 | None:intergenic | 35.0% | |
| TTATAGAAACGAAGAGGGAT+TGG | - | chr3.3:50858783-50858802 | MS.gene04021:intron | 35.0% | |
| TTCACATACACCAACGTTAA+TGG | - | chr3.3:50858405-50858424 | MS.gene04021:intron | 35.0% | |
| ! | AAATGCACGCTTCTTTTGTT+TGG | - | chr3.3:50858365-50858384 | MS.gene04021:intron | 35.0% |
| ! | ATGGTGGTGTTTATAAAACC+GGG | - | chr3.3:50858701-50858720 | MS.gene04021:intron | 35.0% |
| ! | CACGAATTTGTTTCGTGATT+TGG | + | chr3.3:50857783-50857802 | None:intergenic | 35.0% |
| ! | CATTTTCTATGGAATACTGG+TGG | - | chr3.3:50860417-50860436 | MS.gene04021:CDS | 35.0% |
| ! | CGTTGTTACTTGACATAGAA+TGG | + | chr3.3:50858465-50858484 | None:intergenic | 35.0% |
| ! | CTTTTCGTTCAATTATCGCT+GGG | + | chr3.3:50858126-50858145 | None:intergenic | 35.0% |
| ! | GATTCTTGAAAGAGTGCAAA+AGG | - | chr3.3:50858342-50858361 | MS.gene04021:intron | 35.0% |
| ! | GCTCATTTTCTATGGAATAC+TGG | - | chr3.3:50860414-50860433 | MS.gene04021:CDS | 35.0% |
| ! | TTATTTGGAGGCTATTTCAG+CGG | - | chr3.3:50860359-50860378 | MS.gene04021:CDS | 35.0% |
| ! | TTCTTGTATTGGTGGAAAGT+GGG | + | chr3.3:50857877-50857896 | None:intergenic | 35.0% |
| ! | TTGTTTCGTGATTTGGATGA+TGG | + | chr3.3:50857776-50857795 | None:intergenic | 35.0% |
| !! | GCAAGTAACAAAGCATTGTT+TGG | + | chr3.3:50858922-50858941 | None:intergenic | 35.0% |
| ACTTCCTCTTCTTGTTCTTC+CGG | - | chr3.3:50858055-50858074 | MS.gene04021:intron | 40.0% | |
| AGAGGCTTATAGAAACGAAG+AGG | - | chr3.3:50858777-50858796 | MS.gene04021:intron | 40.0% | |
| AGTATGCTCCAACCAACAAT+AGG | + | chr3.3:50859235-50859254 | None:intergenic | 40.0% | |
| ATGAAGCTACCAAAATTGGG+AGG | + | chr3.3:50859071-50859090 | None:intergenic | 40.0% | |
| ATGGGAATCTATGGTTGAAG+AGG | - | chr3.3:50858759-50858778 | MS.gene04021:intron | 40.0% | |
| ATTATCGCTGGGATAAACTC+CGG | + | chr3.3:50858115-50858134 | None:intergenic | 40.0% | |
| CTCCAAATAAGTCTCTTCTG+CGG | + | chr3.3:50860349-50860368 | None:intergenic | 40.0% | |
| CTTCAAGAGAGCTATAGAAG+TGG | - | chr3.3:50860254-50860273 | MS.gene04021:CDS | 40.0% | |
| CTTTCCACCAATACAAGAAG+AGG | - | chr3.3:50857878-50857897 | MS.gene04021:CDS | 40.0% | |
| GAGGCTTATAGAAACGAAGA+GGG | - | chr3.3:50858778-50858797 | MS.gene04021:intron | 40.0% | |
| GCTAGTGTTTGTGATGAAGA+TGG | + | chr3.3:50857737-50857756 | None:intergenic | 40.0% | |
| GGAGGAGAAGTAAATAAGTC+TGG | + | chr3.3:50860006-50860025 | None:intergenic | 40.0% | |
| GTGGATCGAAACAAATTCGT+GGG | + | chr3.3:50857818-50857837 | None:intergenic | 40.0% | |
| TCGTTGCACATGAATTTGAC+AGG | - | chr3.3:50858965-50858984 | MS.gene04021:intron | 40.0% | |
| TCTTCCTCTTCTTGTATTGG+TGG | + | chr3.3:50857885-50857904 | None:intergenic | 40.0% | |
| TTATAAAACCGGGGAAACTG+AGG | - | chr3.3:50858711-50858730 | MS.gene04021:intron | 40.0% | |
| TTATAAGCTTCAGCATCTGG+TGG | + | chr3.3:50860282-50860301 | None:intergenic | 40.0% | |
| ! | AGACCTCTGAAGAACAAAAC+TGG | + | chr3.3:50857840-50857859 | None:intergenic | 40.0% |
| ! | ATAAGTCTGGCTCATGAATC+AGG | + | chr3.3:50859993-50860012 | None:intergenic | 40.0% |
| ! | CTTCTTGTATTGGTGGAAAG+TGG | + | chr3.3:50857878-50857897 | None:intergenic | 40.0% |
| ! | GCTTTTCGTTCAATTATCGC+TGG | + | chr3.3:50858127-50858146 | None:intergenic | 40.0% |
| ! | TGGTGGTGTTTATAAAACCG+GGG | - | chr3.3:50858702-50858721 | MS.gene04021:intron | 40.0% |
| !! | CCCAATTTTGGTAGCTTCAT+TGG | - | chr3.3:50859071-50859090 | MS.gene04021:intron | 40.0% |
| AAATATAAACCGGTGGGGAG+TGG | - | chr3.3:50858646-50858665 | MS.gene04021:intron | 45.0% | |
| AAGTGGAAGTAATACCGCCT+CGG | - | chr3.3:50858597-50858616 | MS.gene04021:intron | 45.0% | |
| AGAACCGGAAGAACAAGAAG+AGG | + | chr3.3:50858062-50858081 | None:intergenic | 45.0% | |
| ATGTGCTTGGTACGACTGAA+AGG | + | chr3.3:50860086-50860105 | None:intergenic | 45.0% | |
| CGCAGAAGAGACTTATTTGG+AGG | - | chr3.3:50860347-50860366 | MS.gene04021:CDS | 45.0% | |
| CTCCGGTGGCTCAAAATTAA+CGG | + | chr3.3:50858098-50858117 | None:intergenic | 45.0% | |
| GGTGGATCGAAACAAATTCG+TGG | + | chr3.3:50857819-50857838 | None:intergenic | 45.0% | |
| GGTGGGAAATATAAACCGGT+GGG | - | chr3.3:50858640-50858659 | MS.gene04021:intron | 45.0% | |
| GTGGGAAATATAAACCGGTG+GGG | - | chr3.3:50858641-50858660 | MS.gene04021:intron | 45.0% | |
| TCTATGGAATACTGGTGGAG+AGG | - | chr3.3:50860422-50860441 | MS.gene04021:CDS | 45.0% | |
| TCTTCAGAGGTCTCGATCTT+TGG | - | chr3.3:50857847-50857866 | MS.gene04021:CDS | 45.0% | |
| TCTTGTTCTTCCGGTTCTTC+TGG | - | chr3.3:50858064-50858083 | MS.gene04021:intron | 45.0% | |
| ! | CCTCTGAAGAACAAAACTGG+TGG | + | chr3.3:50857837-50857856 | None:intergenic | 45.0% |
| ! | TGCCGTTAATTTTGAGCCAC+CGG | - | chr3.3:50858093-50858112 | MS.gene04021:intron | 45.0% |
| !! | CGAACGGGTTTTTCTAATGG+TGG | - | chr3.3:50858685-50858704 | MS.gene04021:intron | 45.0% |
| !! | GCAGCATAATAGGTGTTGCT+AGG | + | chr3.3:50860387-50860406 | None:intergenic | 45.0% |
| !! | GGACGAACGGGTTTTTCTAA+TGG | - | chr3.3:50858682-50858701 | MS.gene04021:intron | 45.0% |
| !!! | CCACCAGTTTTGTTCTTCAG+AGG | - | chr3.3:50857834-50857853 | MS.gene04021:CDS | 45.0% |
| ACGATCGAAGAAGTCTCCAC+CGG | + | chr3.3:50858508-50858527 | None:intergenic | 50.0% | |
| AGTAATACCGCCTCGGTTGA+TGG | - | chr3.3:50858604-50858623 | MS.gene04021:intron | 50.0% | |
| ATTTGACGGGGATGGACGAA+CGG | - | chr3.3:50858669-50858688 | MS.gene04021:intron | 50.0% | |
| CCGCGGTGGGAAATATAAAC+CGG | - | chr3.3:50858636-50858655 | MS.gene04021:intron | 50.0% | |
| CCGGTTTATATTTCCCACCG+CGG | + | chr3.3:50858639-50858658 | None:intergenic | 50.0% | |
| CGGTGGGAAATATAAACCGG+TGG | - | chr3.3:50858639-50858658 | MS.gene04021:intron | 50.0% | |
| GGCATGAGAACCAGAAGAAC+CGG | + | chr3.3:50858077-50858096 | None:intergenic | 50.0% | |
| GGCCGCAGAAGAGACTTATT+TGG | - | chr3.3:50860344-50860363 | MS.gene04021:CDS | 50.0% | |
| GGCTCATGAATCAGGTACAC+TGG | + | chr3.3:50859985-50860004 | None:intergenic | 50.0% | |
| TAAAACCGGGGAAACTGAGG+TGG | - | chr3.3:50858714-50858733 | MS.gene04021:intron | 50.0% | |
| TGAACGAAAAGCGAACAGCG+TGG | - | chr3.3:50858135-50858154 | MS.gene04021:intron | 50.0% | |
| TTCATCCACCTCAGTTTCCC+CGG | + | chr3.3:50858722-50858741 | None:intergenic | 50.0% | |
| TTTAGCTGCAGTTGCAACCC+CGG | - | chr3.3:50858486-50858505 | MS.gene04021:intron | 50.0% | |
| ACTTCCTCCATCAACCGAGG+CGG | + | chr3.3:50858614-50858633 | None:intergenic | 55.0% | |
| ATCGCTGGGATAAACTCCGG+TGG | + | chr3.3:50858112-50858131 | None:intergenic | 55.0% | |
| CGATCGAAGAAGTCTCCACC+GGG | + | chr3.3:50858507-50858526 | None:intergenic | 55.0% | |
| GATCGAAGAAGTCTCCACCG+GGG | + | chr3.3:50858506-50858525 | None:intergenic | 55.0% | |
| TTTGACGGGGATGGACGAAC+GGG | - | chr3.3:50858670-50858689 | MS.gene04021:intron | 55.0% | |
| !! | AATACCGCCTCGGTTGATGG+AGG | - | chr3.3:50858607-50858626 | MS.gene04021:intron | 55.0% |
| CCGTCAAATCCACTCCCCAC+CGG | + | chr3.3:50858658-50858677 | None:intergenic | 60.0% | |
| GCCACTTCCTCCATCAACCG+AGG | + | chr3.3:50858617-50858636 | None:intergenic | 60.0% | |
| ! | CCGGTGGGGAGTGGATTTGA+CGG | - | chr3.3:50858655-50858674 | MS.gene04021:intron | 60.0% |
| ! | CGGTGGGGAGTGGATTTGAC+GGG | - | chr3.3:50858656-50858675 | MS.gene04021:intron | 60.0% |
| ! | GGGAGTGGATTTGACGGGGA+TGG | - | chr3.3:50858661-50858680 | MS.gene04021:intron | 60.0% |
| ! | GGTGGGGAGTGGATTTGACG+GGG | - | chr3.3:50858657-50858676 | MS.gene04021:intron | 60.0% |
| ! | GTTGATGGAGGAAGTGGCCG+CGG | - | chr3.3:50858619-50858638 | MS.gene04021:intron | 60.0% |
| !! | GCCTCGGTTGATGGAGGAAG+TGG | - | chr3.3:50858613-50858632 | MS.gene04021:intron | 60.0% |
| !! | TGAGACACGAGGGCATCACG+TGG | + | chr3.3:50860027-50860046 | None:intergenic | 60.0% |
| AGCTGCAGTTGCAACCCCGG+TGG | - | chr3.3:50858489-50858508 | MS.gene04021:intron | 65.0% | |
| ATGGAGGAAGTGGCCGCGGT+GGG | - | chr3.3:50858623-50858642 | MS.gene04021:intron | 65.0% | |
| !! | GACACGAGGGCATCACGTGG+AGG | + | chr3.3:50860024-50860043 | None:intergenic | 65.0% |
| GATGGAGGAAGTGGCCGCGG+TGG | - | chr3.3:50858622-50858641 | MS.gene04021:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 50857686 | 50860485 | 50857686 | ID=MS.gene04021 |
| chr3.3 | mRNA | 50857686 | 50860485 | 50857686 | ID=MS.gene04021.t1;Parent=MS.gene04021 |
| chr3.3 | exon | 50859185 | 50860485 | 50859185 | ID=MS.gene04021.t1.exon1;Parent=MS.gene04021.t1 |
| chr3.3 | CDS | 50859185 | 50860485 | 50859185 | ID=cds.MS.gene04021.t1;Parent=MS.gene04021.t1 |
| chr3.3 | exon | 50857686 | 50857929 | 50857686 | ID=MS.gene04021.t1.exon2;Parent=MS.gene04021.t1 |
| chr3.3 | CDS | 50857686 | 50857929 | 50857686 | ID=cds.MS.gene04021.t1;Parent=MS.gene04021.t1 |
| Gene Sequence |
| Protein sequence |
