Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05569.t1 | XP_024635477.1 | 94.2 | 514 | 29 | 1 | 1 | 514 | 1 | 513 | 6.90E-211 | 743.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05569.t1 | A0A072UXC0 | 94.2 | 514 | 29 | 1 | 1 | 514 | 1 | 513 | 5.0e-211 | 743.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051525 | MS.gene05569 | 0.809223 | 2.10E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene05569 | -0.809506 | 1.83E-50 | -1.69E-46 |
| MS.gene053292 | MS.gene05569 | 0.834845 | 2.37E-56 | -1.69E-46 |
| MS.gene05569 | MS.gene062524 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene05569 | MS.gene064765 | -0.802138 | 6.47E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene065350 | -0.802629 | 5.12E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene071520 | 0.801045 | 1.08E-48 | -1.69E-46 |
| MS.gene05569 | MS.gene24279 | 0.842555 | 2.41E-58 | -1.69E-46 |
| MS.gene05569 | MS.gene26964 | 0.8524 | 4.73E-61 | -1.69E-46 |
| MS.gene05569 | MS.gene28690 | 0.830383 | 3.03E-55 | -1.69E-46 |
| MS.gene05569 | MS.gene36105 | 0.805461 | 1.32E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene42798 | 0.800241 | 1.58E-48 | -1.69E-46 |
| MS.gene05569 | MS.gene44971 | 0.80422 | 2.40E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene56071 | 0.814531 | 1.47E-51 | -1.69E-46 |
| MS.gene05569 | MS.gene56072 | 0.803522 | 3.35E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene60024 | 0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene05569 | MS.gene70368 | 0.805463 | 1.32E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene74594 | 0.80347 | 3.43E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene74802 | 0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene74804 | 0.800577 | 1.35E-48 | -1.69E-46 |
| MS.gene05569 | MS.gene74809 | 0.802389 | 5.74E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene75349 | 0.854003 | 1.64E-61 | -1.69E-46 |
| MS.gene05569 | MS.gene85276 | -0.804499 | 2.10E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene92106 | 0.832921 | 7.17E-56 | -1.69E-46 |
| MS.gene05569 | MS.gene96111 | 0.801317 | 9.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04542 | MS.gene05569 | PPI |
| MS.gene04021 | MS.gene05569 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05569.t1 | MTR_3g463450 | 96.109 | 514 | 19 | 1 | 1 | 514 | 1 | 513 | 0.0 | 938 |
| MS.gene05569.t1 | MTR_5g082130 | 49.057 | 159 | 73 | 2 | 359 | 509 | 252 | 410 | 5.24e-44 | 160 |
| MS.gene05569.t1 | MTR_5g082130 | 50.746 | 134 | 59 | 2 | 141 | 267 | 90 | 223 | 1.12e-33 | 132 |
| MS.gene05569.t1 | MTR_2g103795 | 41.837 | 98 | 57 | 0 | 400 | 497 | 139 | 236 | 9.54e-19 | 86.7 |
| MS.gene05569.t1 | MTR_4g114690 | 40.206 | 97 | 58 | 0 | 400 | 496 | 162 | 258 | 1.76e-17 | 83.6 |
| MS.gene05569.t1 | MTR_7g099260 | 36.283 | 113 | 65 | 1 | 401 | 506 | 238 | 350 | 3.85e-17 | 83.6 |
| MS.gene05569.t1 | MTR_7g098450 | 38.776 | 98 | 60 | 0 | 401 | 498 | 227 | 324 | 1.32e-16 | 81.6 |
| MS.gene05569.t1 | MTR_7g098450 | 38.776 | 98 | 60 | 0 | 401 | 498 | 250 | 347 | 1.34e-16 | 82.0 |
| MS.gene05569.t1 | MTR_4g010250 | 35.577 | 104 | 67 | 0 | 399 | 502 | 123 | 226 | 1.70e-16 | 79.7 |
| MS.gene05569.t1 | MTR_5g029910 | 37.634 | 93 | 58 | 0 | 404 | 496 | 126 | 218 | 3.64e-15 | 75.9 |
| MS.gene05569.t1 | MTR_1g073230 | 27.922 | 154 | 103 | 1 | 358 | 503 | 223 | 376 | 1.34e-13 | 72.8 |
| MS.gene05569.t1 | MTR_2g103795 | 40.000 | 85 | 51 | 0 | 400 | 484 | 139 | 223 | 2.09e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05569.t1 | AT1G07280 | 52.920 | 548 | 202 | 16 | 8 | 513 | 15 | 548 | 2.80e-177 | 510 |
| MS.gene05569.t1 | AT1G07280 | 52.920 | 548 | 202 | 16 | 8 | 513 | 15 | 548 | 2.80e-177 | 510 |
| MS.gene05569.t1 | AT1G07280 | 52.920 | 548 | 202 | 16 | 8 | 513 | 15 | 548 | 2.80e-177 | 510 |
| MS.gene05569.t1 | AT2G29670 | 50.265 | 567 | 194 | 18 | 1 | 513 | 1 | 533 | 3.01e-159 | 464 |
| MS.gene05569.t1 | AT2G29670 | 50.265 | 567 | 194 | 18 | 1 | 513 | 1 | 533 | 3.01e-159 | 464 |
| MS.gene05569.t1 | AT1G07280 | 49.682 | 471 | 181 | 16 | 8 | 436 | 15 | 471 | 1.57e-126 | 379 |
| MS.gene05569.t1 | AT3G47080 | 42.936 | 545 | 224 | 15 | 10 | 514 | 17 | 514 | 5.26e-125 | 375 |
| MS.gene05569.t1 | AT4G17940 | 39.785 | 93 | 56 | 0 | 404 | 496 | 154 | 246 | 7.27e-17 | 81.3 |
| MS.gene05569.t1 | AT5G20190 | 38.776 | 98 | 60 | 0 | 400 | 497 | 156 | 253 | 7.47e-17 | 81.6 |
| MS.gene05569.t1 | AT1G80130 | 35.052 | 97 | 63 | 0 | 400 | 496 | 165 | 261 | 1.91e-11 | 65.5 |
| MS.gene05569.t1 | AT4G32340 | 35.789 | 95 | 60 | 1 | 404 | 497 | 114 | 208 | 2.83e-11 | 63.9 |
Find 88 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGAATTTGTTTCGTGATT+TGG | 0.185372 | 3.2:+54253913 | None:intergenic |
| TTCACATACACCAACGTTAA+TGG | 0.200607 | 3.2:-54253288 | MS.gene05569:CDS |
| CGACGAAAACAATGCAATTA+TGG | 0.239108 | 3.2:-54253687 | MS.gene05569:CDS |
| AAACAATGCAATTATGGATT+TGG | 0.264253 | 3.2:-54253681 | MS.gene05569:CDS |
| TCTTCAGAGGTCTCGATCTT+TGG | 0.284883 | 3.2:-54253846 | MS.gene05569:CDS |
| TCTTGTTCTTCCGGTTCTTC+TGG | 0.286031 | 3.2:-54253629 | MS.gene05569:CDS |
| ATAAATACGCAACCTTCTTA+TGG | 0.292547 | 3.2:-54251450 | MS.gene05569:CDS |
| TCTTCTTCCTCTTCTTGTAT+TGG | 0.302233 | 3.2:+54253808 | None:intergenic |
| GGCTGCAGAAGAGACTTATT+TGG | 0.302406 | 3.2:-54251407 | MS.gene05569:CDS |
| ACTTCCTCTTCTTGTTCTTC+CGG | 0.317190 | 3.2:-54253638 | MS.gene05569:CDS |
| ACAGAACTTGTTTATCAAAC+AGG | 0.327067 | 3.2:-54252810 | MS.gene05569:CDS |
| AGCATAATTTGCAGCATAAT+AGG | 0.327559 | 3.2:+54251357 | None:intergenic |
| AAGAAGAAGAAACTAAGATA+TGG | 0.341917 | 3.2:-54252953 | MS.gene05569:CDS |
| AACTAAGATATGGGAATCTA+TGG | 0.346469 | 3.2:-54252943 | MS.gene05569:CDS |
| TTATTATAAGCTTCAGCATC+TGG | 0.373541 | 3.2:+54251469 | None:intergenic |
| GCAAGTAACAAAGCATTGTT+TGG | 0.387537 | 3.2:+54252774 | None:intergenic |
| TCTTCCTCTTCTTGTATTGG+TGG | 0.400469 | 3.2:+54253811 | None:intergenic |
| CGTTGTTACTTGACATAGAA+TGG | 0.417033 | 3.2:+54253231 | None:intergenic |
| TTGTTTCGTGATTTGGATGA+TGG | 0.417401 | 3.2:+54253920 | None:intergenic |
| AGTAATACCGCCTCGGTTGA+TGG | 0.418632 | 3.2:-54253089 | MS.gene05569:CDS |
| CTCCGGTGGCTCAAAATTAA+CGG | 0.427707 | 3.2:+54253598 | None:intergenic |
| CTTCTTGTATTGGTGGAAAG+TGG | 0.431042 | 3.2:+54253818 | None:intergenic |
| AATGAAACAATTTGTTTCAC+CGG | 0.442034 | 3.2:-54252877 | MS.gene05569:CDS |
| AAATATAAACCGGTGGGGAG+TGG | 0.442813 | 3.2:-54253047 | MS.gene05569:CDS |
| AGACCTCTGAAGAACAAAAC+TGG | 0.448851 | 3.2:+54253856 | None:intergenic |
| GGCATGAGAACCAGAAGAAC+CGG | 0.459143 | 3.2:+54253619 | None:intergenic |
| TTCTTGTATTGGTGGAAAGT+GGG | 0.467059 | 3.2:+54253819 | None:intergenic |
| GATTCTTGAAAGAGTGCAAA+AGG | 0.467494 | 3.2:-54253351 | MS.gene05569:CDS |
| TTTGACGGGGATGGACGAAC+AGG | 0.470940 | 3.2:-54253023 | MS.gene05569:CDS |
| GAGGAAGAAGAACAATAAGA+AGG | 0.486358 | 3.2:-54253796 | MS.gene05569:CDS |
| GATTCAATCTTAGCAGAAAC+CGG | 0.488724 | 3.2:+54252858 | None:intergenic |
| TTTATGATTCTCAATGAAAA+CGG | 0.489931 | 3.2:+54253530 | None:intergenic |
| GCCTCGGTTGATGGAGGAAG+TGG | 0.490874 | 3.2:-54253080 | MS.gene05569:CDS |
| GGGAGTGGATTTGACGGGGA+TGG | 0.504157 | 3.2:-54253032 | MS.gene05569:CDS |
| AGAAGAAGAAACTAAGATAT+GGG | 0.504906 | 3.2:-54252952 | MS.gene05569:CDS |
| GGTATTACTTCCACTTGAAA+CGG | 0.505897 | 3.2:+54253103 | None:intergenic |
| TCTTGAGAAGAATCAGATAG+AGG | 0.509178 | 3.2:+54251295 | None:intergenic |
| TTATAGAAACGAAGAGGGAT+TGG | 0.510770 | 3.2:-54252910 | MS.gene05569:CDS |
| GCAGCATAATAGGTGTTGCT+AGG | 0.514052 | 3.2:+54251367 | None:intergenic |
| AAGGAAGAATTCAGAGATGT+TGG | 0.520097 | 3.2:-54253491 | MS.gene05569:CDS |
| TCGTTGCACATGAATTTGAC+AGG | 0.520886 | 3.2:-54252728 | MS.gene05569:intron |
| CTCTTGTATGAAGATTTACA+AGG | 0.528496 | 3.2:-54253374 | MS.gene05569:CDS |
| CCGGTGGGGAGTGGATTTGA+CGG | 0.530493 | 3.2:-54253038 | MS.gene05569:CDS |
| TGCAGAAGAGACTTATTTGG+AGG | 0.539439 | 3.2:-54251404 | MS.gene05569:CDS |
| CAGAACTTGTTTATCAAACA+GGG | 0.550923 | 3.2:-54252809 | MS.gene05569:CDS |
| CCGCGGTGGGAAATATAAAC+CGG | 0.553139 | 3.2:-54253057 | MS.gene05569:CDS |
| GATGGAGGAAGTGGCCGCGG+TGG | 0.560003 | 3.2:-54253071 | MS.gene05569:CDS |
| TATAGCTGCAGTTGCAACCC+CGG | 0.561736 | 3.2:-54253207 | MS.gene05569:CDS |
| CAAATCACGAAACAAATTCG+TGG | 0.561853 | 3.2:-54253912 | MS.gene05569:CDS |
| CTTTCCACCAATACAAGAAG+AGG | 0.562841 | 3.2:-54253815 | MS.gene05569:CDS |
| ATGGAGGAAGTGGCCGCGGT+GGG | 0.564800 | 3.2:-54253070 | MS.gene05569:CDS |
| ATGGGAATCTATGGTTGAAG+AGG | 0.565563 | 3.2:-54252934 | MS.gene05569:CDS |
| CTTCAAGAGAGCTATAGAAG+TGG | 0.567749 | 3.2:-54251497 | MS.gene05569:CDS |
| AGGAAGAAGAACAATAAGAA+GGG | 0.569239 | 3.2:-54253795 | MS.gene05569:CDS |
| GTTGATGGAGGAAGTGGCCG+CGG | 0.570618 | 3.2:-54253074 | MS.gene05569:CDS |
| CGATCGAAGAAGTCTCCACC+GGG | 0.571840 | 3.2:+54253189 | None:intergenic |
| AGAACCGGAAGAACAAGAAG+AGG | 0.572363 | 3.2:+54253634 | None:intergenic |
| AAAACGTTCTCCGTTTCAAG+TGG | 0.573365 | 3.2:-54253113 | MS.gene05569:CDS |
| CGGTGGGGAGTGGATTTGAC+GGG | 0.580234 | 3.2:-54253037 | MS.gene05569:CDS |
| TTATAAGCTTCAGCATCTGG+TGG | 0.586028 | 3.2:+54251472 | None:intergenic |
| TTTCACTTTACAAATGAGAG+AGG | 0.591681 | 3.2:-54253399 | MS.gene05569:CDS |
| CCGTCAAATCCACTCCCCAC+CGG | 0.599440 | 3.2:+54253038 | None:intergenic |
| AAAACAGAAACTGAAGCTGA+AGG | 0.601124 | 3.2:-54253510 | MS.gene05569:CDS |
| ACGATCGAAGAAGTCTCCAC+CGG | 0.601465 | 3.2:+54253188 | None:intergenic |
| GGTGGATCGAAACAAATTCG+TGG | 0.602746 | 3.2:+54253877 | None:intergenic |
| AAGTGGAAGTAATACCGCCT+CGG | 0.604793 | 3.2:-54253096 | MS.gene05569:CDS |
| AAATCACGAAACAAATTCGT+GGG | 0.608197 | 3.2:-54253911 | MS.gene05569:CDS |
| GAGGCTTATAGAAACGAAGA+GGG | 0.619193 | 3.2:-54252915 | MS.gene05569:CDS |
| TCTATGGAATACTGGTGGAG+AGG | 0.619309 | 3.2:-54251329 | MS.gene05569:CDS |
| GCTAGTGTTTGTGATGAAGA+TGG | 0.620714 | 3.2:+54253959 | None:intergenic |
| GTGGATCGAAACAAATTCGT+GGG | 0.620906 | 3.2:+54253878 | None:intergenic |
| CGGTGGGAAATATAAACCGG+TGG | 0.621319 | 3.2:-54253054 | MS.gene05569:CDS |
| GCCACTTCCTCCATCAACCG+AGG | 0.626638 | 3.2:+54253079 | None:intergenic |
| GGTGGGAAATATAAACCGGT+GGG | 0.628312 | 3.2:-54253053 | MS.gene05569:CDS |
| ATTATCGCTGGTATAAACTC+CGG | 0.629792 | 3.2:+54253581 | None:intergenic |
| AGAGGCTTATAGAAACGAAG+AGG | 0.630772 | 3.2:-54252916 | MS.gene05569:CDS |
| ATCGCTGGTATAAACTCCGG+TGG | 0.635655 | 3.2:+54253584 | None:intergenic |
| CCTCTGAAGAACAAAACTGG+TGG | 0.635757 | 3.2:+54253859 | None:intergenic |
| AGCTGCAGTTGCAACCCCGG+TGG | 0.649417 | 3.2:-54253204 | MS.gene05569:CDS |
| TCTTGTATGAAGATTTACAA+GGG | 0.655491 | 3.2:-54253373 | MS.gene05569:CDS |
| ATAACATAAACCATTAACGT+TGG | 0.667251 | 3.2:+54253278 | None:intergenic |
| AATACCGCCTCGGTTGATGG+AGG | 0.677175 | 3.2:-54253086 | MS.gene05569:CDS |
| TGAACGAAAAGCGAACAGCG+TGG | 0.685411 | 3.2:-54253558 | MS.gene05569:CDS |
| ACTTCCTCCATCAACCGAGG+CGG | 0.726481 | 3.2:+54253082 | None:intergenic |
| CCGGTTTATATTTCCCACCG+CGG | 0.731142 | 3.2:+54253057 | None:intergenic |
| GTGGGAAATATAAACCGGTG+GGG | 0.746911 | 3.2:-54253052 | MS.gene05569:CDS |
| GGTGGGGAGTGGATTTGACG+GGG | 0.753129 | 3.2:-54253036 | MS.gene05569:CDS |
| GATCGAAGAAGTCTCCACCG+GGG | 0.831475 | 3.2:+54253190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTTATAATAGTAT+TGG | + | chr3.2:54252985-54253004 | None:intergenic | 10.0% |
| !!! | TTTTCTTCTTATAATAGTAT+TGG | + | chr3.2:54252949-54252968 | None:intergenic | 15.0% |
| !! | AGACTATACTATTGAAATTT+AGG | - | chr3.2:54252795-54252814 | MS.gene05569:CDS | 20.0% |
| !! | ATGAATGAATTAACTTTACA+TGG | - | chr3.2:54253187-54253206 | MS.gene05569:CDS | 20.0% |
| !! | TAAAAAATGAAAAGATTCCA+TGG | + | chr3.2:54252610-54252629 | None:intergenic | 20.0% |
| !! | TAGGATTTGAATTGAAAAAT+AGG | - | chr3.2:54252814-54252833 | MS.gene05569:CDS | 20.0% |
| !! | TTTATGATTCTCAATGAAAA+CGG | + | chr3.2:54251768-54251787 | None:intergenic | 20.0% |
| !!! | AATTGAAAAATAGGTGTTAT+TGG | - | chr3.2:54252823-54252842 | MS.gene05569:CDS | 20.0% |
| !!! | AGATTTATTATGCTATTTTG+AGG | - | chr3.2:54253406-54253425 | MS.gene05569:CDS | 20.0% |
| !!! | AGTTGTATAATTGACAATTT+TGG | - | chr3.2:54253742-54253761 | MS.gene05569:CDS | 20.0% |
| !!! | ATCTGATTTTATTCCATAAT+TGG | + | chr3.2:54253390-54253409 | None:intergenic | 20.0% |
| !!! | ATTGAAAAATAGGTGTTATT+GGG | - | chr3.2:54252824-54252843 | MS.gene05569:CDS | 20.0% |
| !!! | TTCTTATAATAGTATTGGAA+GGG | + | chr3.2:54252944-54252963 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTTCTTCTATTTT+TGG | + | chr3.2:54253441-54253460 | None:intergenic | 20.0% |
| ! | AAACAATGCAATTATGGATT+TGG | - | chr3.2:54251614-54251633 | MS.gene05569:intron | 25.0% |
| ! | AAGAAGAAGAAACTAAGATA+TGG | - | chr3.2:54252342-54252361 | MS.gene05569:intron | 25.0% |
| ! | AGAAGAAGAAACTAAGATAT+GGG | - | chr3.2:54252343-54252362 | MS.gene05569:intron | 25.0% |
| ! | ATAACATAAACCATTAACGT+TGG | + | chr3.2:54252020-54252039 | None:intergenic | 25.0% |
| ! | ATCTAACCAAAAATAGAAGA+AGG | - | chr3.2:54253432-54253451 | MS.gene05569:CDS | 25.0% |
| ! | GACTAGATACATCAATTATT+CGG | + | chr3.2:54253048-54253067 | None:intergenic | 25.0% |
| ! | TCTTGTATGAAGATTTACAA+GGG | - | chr3.2:54251922-54251941 | MS.gene05569:intron | 25.0% |
| !! | AATGAAACAATTTGTTTCAC+CGG | - | chr3.2:54252418-54252437 | MS.gene05569:intron | 25.0% |
| !! | AATGGTGGTGTTTATAAAAA+CGG | - | chr3.2:54252302-54252321 | MS.gene05569:intron | 25.0% |
| !! | ATTTTTCACTTTCCATAAGA+AGG | + | chr3.2:54253860-54253879 | None:intergenic | 25.0% |
| !! | CAAATTATGCTCATTTTCTA+TGG | - | chr3.2:54253950-54253969 | MS.gene05569:CDS | 25.0% |
| !! | CTTCTTATAATAGTATTGGA+AGG | + | chr3.2:54252945-54252964 | None:intergenic | 25.0% |
| !! | GAAAGTGAAAAATGATTTGT+GGG | - | chr3.2:54253867-54253886 | MS.gene05569:CDS | 25.0% |
| !! | TGTATGCTTTTGAATATTCA+GGG | - | chr3.2:54253765-54253784 | MS.gene05569:CDS | 25.0% |
| !!! | AATTTGCATTGGAGATTTTT+TGG | - | chr3.2:54253353-54253372 | MS.gene05569:CDS | 25.0% |
| !!! | TAGTTTGTATTTTAAGCTAC+CGG | - | chr3.2:54253312-54253331 | MS.gene05569:CDS | 25.0% |
| AAATCACGAAACAAATTCGT+GGG | - | chr3.2:54251384-54251403 | MS.gene05569:CDS | 30.0% | |
| AACTAAGATATGGGAATCTA+TGG | - | chr3.2:54252352-54252371 | MS.gene05569:intron | 30.0% | |
| AATATTGAAAGAGGAGTTTG+CGG | - | chr3.2:54253485-54253504 | MS.gene05569:CDS | 30.0% | |
| AGGAAGAAGAACAATAAGAA+GGG | - | chr3.2:54251500-54251519 | MS.gene05569:CDS | 30.0% | |
| AGTATAGTCTAACCAACAAT+AGG | + | chr3.2:54252785-54252804 | None:intergenic | 30.0% | |
| ATAAATACGCAACCTTCTTA+TGG | - | chr3.2:54253845-54253864 | MS.gene05569:CDS | 30.0% | |
| ATGCACTAAACAATTTGCAT+TGG | - | chr3.2:54253342-54253361 | MS.gene05569:CDS | 30.0% | |
| CTCTTGTATGAAGATTTACA+AGG | - | chr3.2:54251921-54251940 | MS.gene05569:intron | 30.0% | |
| CTTATGAAAAATCATGTGCT+TGG | + | chr3.2:54253643-54253662 | None:intergenic | 30.0% | |
| GGAAAGTGAAAAATGATTTG+TGG | - | chr3.2:54253866-54253885 | MS.gene05569:CDS | 30.0% | |
| GTCTTGATGAATATTGAAAG+AGG | - | chr3.2:54253476-54253495 | MS.gene05569:CDS | 30.0% | |
| TGAAAAGATTCCATGGAATT+TGG | + | chr3.2:54252603-54252622 | None:intergenic | 30.0% | |
| TGTTGCTATAATCCTATTGT+TGG | - | chr3.2:54252770-54252789 | MS.gene05569:CDS | 30.0% | |
| TTATTATAAGCTTCAGCATC+TGG | + | chr3.2:54253829-54253848 | None:intergenic | 30.0% | |
| TTTCACTTTACAAATGAGAG+AGG | - | chr3.2:54251896-54251915 | MS.gene05569:intron | 30.0% | |
| ! | ACAGAACTTGTTTATCAAAC+AGG | - | chr3.2:54252485-54252504 | MS.gene05569:intron | 30.0% |
| ! | AGCATAATTTGCAGCATAAT+AGG | + | chr3.2:54253941-54253960 | None:intergenic | 30.0% |
| ! | ATGGTGGTGTTTATAAAAAC+GGG | - | chr3.2:54252303-54252322 | MS.gene05569:intron | 30.0% |
| ! | CAAGCACATGATTTTTCATA+AGG | - | chr3.2:54253641-54253660 | MS.gene05569:CDS | 30.0% |
| ! | CAGAACTTGTTTATCAAACA+GGG | - | chr3.2:54252486-54252505 | MS.gene05569:intron | 30.0% |
| ! | CATAATTGCATTGTTTTCGT+CGG | + | chr3.2:54251610-54251629 | None:intergenic | 30.0% |
| ! | GTGTATGCTTTTGAATATTC+AGG | - | chr3.2:54253764-54253783 | MS.gene05569:CDS | 30.0% |
| ! | TTCATTTTACCTCCCAATTT+TGG | - | chr3.2:54252649-54252668 | MS.gene05569:intron | 30.0% |
| !! | AACGGAGAACGTTTTAATAA+CGG | + | chr3.2:54252177-54252196 | None:intergenic | 30.0% |
| !! | GAAGAAAGCTTTTTCTTCTA+TGG | - | chr3.2:54251848-54251867 | MS.gene05569:intron | 30.0% |
| !!! | ATATTTTCTTTTGAGACACG+AGG | + | chr3.2:54253579-54253598 | None:intergenic | 30.0% |
| !!! | TATTTTCTTTTGAGACACGA+GGG | + | chr3.2:54253578-54253597 | None:intergenic | 30.0% |
| AAAACAGAAACTGAAGCTGA+AGG | - | chr3.2:54251785-54251804 | MS.gene05569:intron | 35.0% | |
| AAGGAAGAATTCAGAGATGT+TGG | - | chr3.2:54251804-54251823 | MS.gene05569:intron | 35.0% | |
| ACCAATGAAGCTACCAAAAT+TGG | + | chr3.2:54252665-54252684 | None:intergenic | 35.0% | |
| ATTATCGCTGGTATAAACTC+CGG | + | chr3.2:54251717-54251736 | None:intergenic | 35.0% | |
| CAAATCACGAAACAAATTCG+TGG | - | chr3.2:54251383-54251402 | MS.gene05569:CDS | 35.0% | |
| CCAATGAAGCTACCAAAATT+GGG | + | chr3.2:54252664-54252683 | None:intergenic | 35.0% | |
| CGACGAAAACAATGCAATTA+TGG | - | chr3.2:54251608-54251627 | MS.gene05569:intron | 35.0% | |
| GAGGAAGAAGAACAATAAGA+AGG | - | chr3.2:54251499-54251518 | MS.gene05569:CDS | 35.0% | |
| GATTCAATCTTAGCAGAAAC+CGG | + | chr3.2:54252440-54252459 | None:intergenic | 35.0% | |
| GGTATTACTTCCACTTGAAA+CGG | + | chr3.2:54252195-54252214 | None:intergenic | 35.0% | |
| TCTTCTTCCTCTTCTTGTAT+TGG | + | chr3.2:54251490-54251509 | None:intergenic | 35.0% | |
| TCTTGAGAAGAATCAGATAG+AGG | + | chr3.2:54254003-54254022 | None:intergenic | 35.0% | |
| TGCGTATATTCCAAATTCCA+TGG | - | chr3.2:54252590-54252609 | MS.gene05569:intron | 35.0% | |
| TGTTTAGTGCATCTAGAAAC+CGG | + | chr3.2:54253334-54253353 | None:intergenic | 35.0% | |
| TTATAAAAACGGGGAAACTG+AGG | - | chr3.2:54252313-54252332 | MS.gene05569:intron | 35.0% | |
| TTATAGAAACGAAGAGGGAT+TGG | - | chr3.2:54252385-54252404 | MS.gene05569:intron | 35.0% | |
| TTCACATACACCAACGTTAA+TGG | - | chr3.2:54252007-54252026 | MS.gene05569:intron | 35.0% | |
| ! | AAATGCACGCTTCTTTTGTT+TGG | - | chr3.2:54251967-54251986 | MS.gene05569:intron | 35.0% |
| ! | CACGAATTTGTTTCGTGATT+TGG | + | chr3.2:54251385-54251404 | None:intergenic | 35.0% |
| ! | CATTTTCTATGGAATACTGG+TGG | - | chr3.2:54253961-54253980 | MS.gene05569:CDS | 35.0% |
| ! | CGTTGTTACTTGACATAGAA+TGG | + | chr3.2:54252067-54252086 | None:intergenic | 35.0% |
| ! | GATTCTTGAAAGAGTGCAAA+AGG | - | chr3.2:54251944-54251963 | MS.gene05569:intron | 35.0% |
| ! | GCTCATTTTCTATGGAATAC+TGG | - | chr3.2:54253958-54253977 | MS.gene05569:CDS | 35.0% |
| ! | GGAGCTAAGTTTTCCAATTA+TGG | - | chr3.2:54253374-54253393 | MS.gene05569:CDS | 35.0% |
| ! | TGGTGGTGTTTATAAAAACG+GGG | - | chr3.2:54252304-54252323 | MS.gene05569:intron | 35.0% |
| ! | TTCTTGTATTGGTGGAAAGT+GGG | + | chr3.2:54251479-54251498 | None:intergenic | 35.0% |
| ! | TTGTTTCGTGATTTGGATGA+TGG | + | chr3.2:54251378-54251397 | None:intergenic | 35.0% |
| !! | CATTGACTTTACCTTTCAGT+CGG | - | chr3.2:54253613-54253632 | MS.gene05569:CDS | 35.0% |
| !! | GCAAGTAACAAAGCATTGTT+TGG | + | chr3.2:54252524-54252543 | None:intergenic | 35.0% |
| AAAACGTTCTCCGTTTCAAG+TGG | - | chr3.2:54252182-54252201 | MS.gene05569:intron | 40.0% | |
| ACTTCCTCTTCTTGTTCTTC+CGG | - | chr3.2:54251657-54251676 | MS.gene05569:intron | 40.0% | |
| AGAGGCTTATAGAAACGAAG+AGG | - | chr3.2:54252379-54252398 | MS.gene05569:intron | 40.0% | |
| ATGAAGCTACCAAAATTGGG+AGG | + | chr3.2:54252661-54252680 | None:intergenic | 40.0% | |
| ATGGGAATCTATGGTTGAAG+AGG | - | chr3.2:54252361-54252380 | MS.gene05569:intron | 40.0% | |
| CTTCAAGAGAGCTATAGAAG+TGG | - | chr3.2:54253798-54253817 | MS.gene05569:CDS | 40.0% | |
| CTTTCCACCAATACAAGAAG+AGG | - | chr3.2:54251480-54251499 | MS.gene05569:CDS | 40.0% | |
| GAGGCTTATAGAAACGAAGA+GGG | - | chr3.2:54252380-54252399 | MS.gene05569:intron | 40.0% | |
| GCTAGTGTTTGTGATGAAGA+TGG | + | chr3.2:54251339-54251358 | None:intergenic | 40.0% | |
| GGAGGAGAAGTAAATAAGTC+TGG | + | chr3.2:54253547-54253566 | None:intergenic | 40.0% | |
| GTGGATCGAAACAAATTCGT+GGG | + | chr3.2:54251420-54251439 | None:intergenic | 40.0% | |
| TCGTTGCACATGAATTTGAC+AGG | - | chr3.2:54252567-54252586 | MS.gene05569:intron | 40.0% | |
| TCTTCCTCTTCTTGTATTGG+TGG | + | chr3.2:54251487-54251506 | None:intergenic | 40.0% | |
| TGCAGAAGAGACTTATTTGG+AGG | - | chr3.2:54253891-54253910 | MS.gene05569:CDS | 40.0% | |
| TTATAAGCTTCAGCATCTGG+TGG | + | chr3.2:54253826-54253845 | None:intergenic | 40.0% | |
| ! | AGACCTCTGAAGAACAAAAC+TGG | + | chr3.2:54251442-54251461 | None:intergenic | 40.0% |
| ! | ATAAGTCTGGCTCATGAATC+AGG | + | chr3.2:54253534-54253553 | None:intergenic | 40.0% |
| ! | CATTGTTTTCGTCGGAGATT+TGG | + | chr3.2:54251602-54251621 | None:intergenic | 40.0% |
| ! | CGAACAGGTTTTTCTAATGG+TGG | - | chr3.2:54252287-54252306 | MS.gene05569:intron | 40.0% |
| ! | CTTCTTGTATTGGTGGAAAG+TGG | + | chr3.2:54251480-54251499 | None:intergenic | 40.0% |
| ! | GCTTTTCGTTCAATTATCGC+TGG | + | chr3.2:54251729-54251748 | None:intergenic | 40.0% |
| ! | GGACGAACAGGTTTTTCTAA+TGG | - | chr3.2:54252284-54252303 | MS.gene05569:intron | 40.0% |
| !! | CCCAATTTTGGTAGCTTCAT+TGG | - | chr3.2:54252661-54252680 | MS.gene05569:intron | 40.0% |
| AAATATAAACCGGTGGGGAG+TGG | - | chr3.2:54252248-54252267 | MS.gene05569:intron | 45.0% | |
| AAGTGGAAGTAATACCGCCT+CGG | - | chr3.2:54252199-54252218 | MS.gene05569:intron | 45.0% | |
| AGAACCGGAAGAACAAGAAG+AGG | + | chr3.2:54251664-54251683 | None:intergenic | 45.0% | |
| CTCCGGTGGCTCAAAATTAA+CGG | + | chr3.2:54251700-54251719 | None:intergenic | 45.0% | |
| GGCTGCAGAAGAGACTTATT+TGG | - | chr3.2:54253888-54253907 | MS.gene05569:CDS | 45.0% | |
| GGTGGATCGAAACAAATTCG+TGG | + | chr3.2:54251421-54251440 | None:intergenic | 45.0% | |
| GGTGGGAAATATAAACCGGT+GGG | - | chr3.2:54252242-54252261 | MS.gene05569:intron | 45.0% | |
| GTGGGAAATATAAACCGGTG+GGG | - | chr3.2:54252243-54252262 | MS.gene05569:intron | 45.0% | |
| TAAAAACGGGGAAACTGAGG+TGG | - | chr3.2:54252316-54252335 | MS.gene05569:intron | 45.0% | |
| TCTATGGAATACTGGTGGAG+AGG | - | chr3.2:54253966-54253985 | MS.gene05569:CDS | 45.0% | |
| TCTTCAGAGGTCTCGATCTT+TGG | - | chr3.2:54251449-54251468 | MS.gene05569:CDS | 45.0% | |
| TCTTGTTCTTCCGGTTCTTC+TGG | - | chr3.2:54251666-54251685 | MS.gene05569:intron | 45.0% | |
| ! | CCTCTGAAGAACAAAACTGG+TGG | + | chr3.2:54251439-54251458 | None:intergenic | 45.0% |
| ! | TGCCGTTAATTTTGAGCCAC+CGG | - | chr3.2:54251695-54251714 | MS.gene05569:intron | 45.0% |
| !! | GCAGCATAATAGGTGTTGCT+AGG | + | chr3.2:54253931-54253950 | None:intergenic | 45.0% |
| !!! | CCACCAGTTTTGTTCTTCAG+AGG | - | chr3.2:54251436-54251455 | MS.gene05569:CDS | 45.0% |
| ACGATCGAAGAAGTCTCCAC+CGG | + | chr3.2:54252110-54252129 | None:intergenic | 50.0% | |
| AGTAATACCGCCTCGGTTGA+TGG | - | chr3.2:54252206-54252225 | MS.gene05569:intron | 50.0% | |
| ATCGCTGGTATAAACTCCGG+TGG | + | chr3.2:54251714-54251733 | None:intergenic | 50.0% | |
| CCGCGGTGGGAAATATAAAC+CGG | - | chr3.2:54252238-54252257 | MS.gene05569:intron | 50.0% | |
| CCGGTTTATATTTCCCACCG+CGG | + | chr3.2:54252241-54252260 | None:intergenic | 50.0% | |
| CGGTGGGAAATATAAACCGG+TGG | - | chr3.2:54252241-54252260 | MS.gene05569:intron | 50.0% | |
| GGCATGAGAACCAGAAGAAC+CGG | + | chr3.2:54251679-54251698 | None:intergenic | 50.0% | |
| GGCTCATGAATCAGGTACAC+TGG | + | chr3.2:54253526-54253545 | None:intergenic | 50.0% | |
| TATAGCTGCAGTTGCAACCC+CGG | - | chr3.2:54252088-54252107 | MS.gene05569:intron | 50.0% | |
| TGAACGAAAAGCGAACAGCG+TGG | - | chr3.2:54251737-54251756 | MS.gene05569:intron | 50.0% | |
| ! | TGCTTGGTAGTCCGACTGAA+AGG | + | chr3.2:54253627-54253646 | None:intergenic | 50.0% |
| ACTTCCTCCATCAACCGAGG+CGG | + | chr3.2:54252216-54252235 | None:intergenic | 55.0% | |
| CGATCGAAGAAGTCTCCACC+GGG | + | chr3.2:54252109-54252128 | None:intergenic | 55.0% | |
| GATCGAAGAAGTCTCCACCG+GGG | + | chr3.2:54252108-54252127 | None:intergenic | 55.0% | |
| TTTGACGGGGATGGACGAAC+AGG | - | chr3.2:54252272-54252291 | MS.gene05569:intron | 55.0% | |
| !! | AATACCGCCTCGGTTGATGG+AGG | - | chr3.2:54252209-54252228 | MS.gene05569:intron | 55.0% |
| CCGTCAAATCCACTCCCCAC+CGG | + | chr3.2:54252260-54252279 | None:intergenic | 60.0% | |
| GCCACTTCCTCCATCAACCG+AGG | + | chr3.2:54252219-54252238 | None:intergenic | 60.0% | |
| ! | CCGGTGGGGAGTGGATTTGA+CGG | - | chr3.2:54252257-54252276 | MS.gene05569:intron | 60.0% |
| ! | CGGTGGGGAGTGGATTTGAC+GGG | - | chr3.2:54252258-54252277 | MS.gene05569:intron | 60.0% |
| ! | GGGAGTGGATTTGACGGGGA+TGG | - | chr3.2:54252263-54252282 | MS.gene05569:intron | 60.0% |
| ! | GGTGGGGAGTGGATTTGACG+GGG | - | chr3.2:54252259-54252278 | MS.gene05569:intron | 60.0% |
| ! | GTTGATGGAGGAAGTGGCCG+CGG | - | chr3.2:54252221-54252240 | MS.gene05569:intron | 60.0% |
| !! | GCCTCGGTTGATGGAGGAAG+TGG | - | chr3.2:54252215-54252234 | MS.gene05569:intron | 60.0% |
| !! | TGAGACACGAGGGCATCACG+TGG | + | chr3.2:54253568-54253587 | None:intergenic | 60.0% |
| AGCTGCAGTTGCAACCCCGG+TGG | - | chr3.2:54252091-54252110 | MS.gene05569:intron | 65.0% | |
| ATGGAGGAAGTGGCCGCGGT+GGG | - | chr3.2:54252225-54252244 | MS.gene05569:intron | 65.0% | |
| !! | GACACGAGGGCATCACGTGG+AGG | + | chr3.2:54253565-54253584 | None:intergenic | 65.0% |
| GATGGAGGAAGTGGCCGCGG+TGG | - | chr3.2:54252224-54252243 | MS.gene05569:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 54251288 | 54254029 | 54251288 | ID=MS.gene05569 |
| chr3.2 | mRNA | 54251288 | 54254029 | 54251288 | ID=MS.gene05569.t1;Parent=MS.gene05569 |
| chr3.2 | exon | 54252729 | 54254029 | 54252729 | ID=MS.gene05569.t1.exon1;Parent=MS.gene05569.t1 |
| chr3.2 | CDS | 54252729 | 54254029 | 54252729 | ID=cds.MS.gene05569.t1;Parent=MS.gene05569.t1 |
| chr3.2 | exon | 54251288 | 54251531 | 54251288 | ID=MS.gene05569.t1.exon2;Parent=MS.gene05569.t1 |
| chr3.2 | CDS | 54251288 | 54251531 | 54251288 | ID=cds.MS.gene05569.t1;Parent=MS.gene05569.t1 |
| Gene Sequence |
| Protein sequence |
