Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04542.t1 | XP_024635477.1 | 94.6 | 514 | 24 | 2 | 1 | 511 | 1 | 513 | 2.80E-212 | 748 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04542.t1 | A0A072UXC0 | 94.6 | 514 | 24 | 2 | 1 | 511 | 1 | 513 | 2.0e-212 | 748.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04021 | MS.gene04542 | PPI |
| MS.gene04542 | MS.gene05569 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04542.t1 | MTR_3g463450 | 95.914 | 514 | 17 | 2 | 1 | 511 | 1 | 513 | 0.0 | 1007 |
| MS.gene04542.t1 | MTR_5g082130 | 49.057 | 159 | 73 | 2 | 356 | 506 | 252 | 410 | 3.48e-44 | 161 |
| MS.gene04542.t1 | MTR_5g082130 | 50.746 | 134 | 59 | 2 | 138 | 264 | 90 | 223 | 1.13e-33 | 132 |
| MS.gene04542.t1 | MTR_2g103795 | 41.837 | 98 | 57 | 0 | 397 | 494 | 139 | 236 | 1.16e-18 | 86.7 |
| MS.gene04542.t1 | MTR_4g114690 | 40.206 | 97 | 58 | 0 | 397 | 493 | 162 | 258 | 1.83e-17 | 83.2 |
| MS.gene04542.t1 | MTR_7g099260 | 36.283 | 113 | 65 | 1 | 398 | 503 | 238 | 350 | 3.53e-17 | 83.6 |
| MS.gene04542.t1 | MTR_7g098450 | 38.776 | 98 | 60 | 0 | 398 | 495 | 227 | 324 | 1.29e-16 | 81.6 |
| MS.gene04542.t1 | MTR_7g098450 | 38.776 | 98 | 60 | 0 | 398 | 495 | 250 | 347 | 1.34e-16 | 82.0 |
| MS.gene04542.t1 | MTR_4g010250 | 35.577 | 104 | 67 | 0 | 396 | 499 | 123 | 226 | 1.83e-16 | 79.7 |
| MS.gene04542.t1 | MTR_5g029910 | 37.634 | 93 | 58 | 0 | 401 | 493 | 126 | 218 | 3.75e-15 | 75.9 |
| MS.gene04542.t1 | MTR_1g073230 | 27.922 | 154 | 103 | 1 | 355 | 500 | 223 | 376 | 7.57e-14 | 73.6 |
| MS.gene04542.t1 | MTR_2g103795 | 40.000 | 85 | 51 | 0 | 397 | 481 | 139 | 223 | 2.18e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04542.t1 | AT1G07280 | 53.050 | 541 | 209 | 14 | 8 | 510 | 15 | 548 | 8.01e-178 | 511 |
| MS.gene04542.t1 | AT1G07280 | 53.050 | 541 | 209 | 14 | 8 | 510 | 15 | 548 | 8.01e-178 | 511 |
| MS.gene04542.t1 | AT1G07280 | 53.050 | 541 | 209 | 14 | 8 | 510 | 15 | 548 | 8.01e-178 | 511 |
| MS.gene04542.t1 | AT2G29670 | 51.241 | 564 | 190 | 19 | 1 | 510 | 1 | 533 | 1.95e-161 | 469 |
| MS.gene04542.t1 | AT2G29670 | 51.241 | 564 | 190 | 19 | 1 | 510 | 1 | 533 | 1.95e-161 | 469 |
| MS.gene04542.t1 | AT1G07280 | 49.784 | 464 | 188 | 14 | 8 | 433 | 15 | 471 | 2.96e-127 | 380 |
| MS.gene04542.t1 | AT3G47080 | 43.123 | 538 | 230 | 16 | 10 | 511 | 17 | 514 | 1.28e-125 | 377 |
| MS.gene04542.t1 | AT4G17940 | 39.785 | 93 | 56 | 0 | 401 | 493 | 154 | 246 | 6.93e-17 | 81.3 |
| MS.gene04542.t1 | AT5G20190 | 38.776 | 98 | 60 | 0 | 397 | 494 | 156 | 253 | 7.25e-17 | 81.6 |
| MS.gene04542.t1 | AT1G80130 | 35.052 | 97 | 63 | 0 | 397 | 493 | 165 | 261 | 1.74e-11 | 65.9 |
| MS.gene04542.t1 | AT4G32340 | 35.789 | 95 | 60 | 1 | 401 | 494 | 114 | 208 | 2.88e-11 | 63.9 |
Find 93 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGAATTTGTTTCGAGATT+TGG | 0.171437 | 3.1:+47530908 | None:intergenic |
| TTCACATACACCAACGTTAA+TGG | 0.200607 | 3.1:-47530292 | MS.gene04542:CDS |
| CGACGAAAACAATGCAATTA+TGG | 0.239108 | 3.1:-47530682 | MS.gene04542:CDS |
| AAACAATGCAATTATGGATT+TGG | 0.264253 | 3.1:-47530676 | MS.gene04542:CDS |
| TCTTCACAGGTCTCGATCTT+TGG | 0.284883 | 3.1:-47530841 | MS.gene04542:CDS |
| ATAAATACGCAACCTTCTTA+TGG | 0.292547 | 3.1:-47528405 | MS.gene04542:CDS |
| TCTTCTTCCTCTTCTTGTAT+TGG | 0.302233 | 3.1:+47530803 | None:intergenic |
| GGCCGCAGAAGAGACTTATT+TGG | 0.312086 | 3.1:-47528362 | MS.gene04542:CDS |
| ACTTCCTCTTCTTGTTCTTC+CGG | 0.317190 | 3.1:-47530633 | MS.gene04542:CDS |
| ACAGAACTTGTTTATCAAAC+AGG | 0.327067 | 3.1:-47529814 | MS.gene04542:CDS |
| AGCATAATTTGCAGCATAAT+AGG | 0.327559 | 3.1:+47528312 | None:intergenic |
| AAGAAGAAGAAACTAAGATA+TGG | 0.341917 | 3.1:-47529957 | MS.gene04542:CDS |
| AACTAAGATATGGGAATCTA+TGG | 0.346469 | 3.1:-47529947 | MS.gene04542:CDS |
| TTATTATAAGCTTCAGCATC+TGG | 0.373541 | 3.1:+47528424 | None:intergenic |
| AGACCTGTGAAGAACAAAAT+TGG | 0.374071 | 3.1:+47530851 | None:intergenic |
| GCAAGTAACAAAGCATTGTT+TGG | 0.387537 | 3.1:+47529778 | None:intergenic |
| TTCTTGTTCTTCCGGTTCTC+AGG | 0.388396 | 3.1:-47530625 | MS.gene04542:CDS |
| AGTAATACTGCCTCGGTTGA+TGG | 0.395286 | 3.1:-47530093 | MS.gene04542:CDS |
| TTGTTTCGAGATTTGGATGA+TGG | 0.395882 | 3.1:+47530915 | None:intergenic |
| CGTTGTTACTTGACATAGAA+TGG | 0.399599 | 3.1:+47530235 | None:intergenic |
| TCTTCCTCTTCTTGTATTGG+TGG | 0.400469 | 3.1:+47530806 | None:intergenic |
| TTATAGAAACGAAGAGGGTT+TGG | 0.416689 | 3.1:-47529914 | MS.gene04542:CDS |
| AATGGTGGTGTTTATAATAC+CGG | 0.417581 | 3.1:-47529997 | MS.gene04542:CDS |
| CTTCTTGTATTGGTGGAAAG+TGG | 0.431042 | 3.1:+47530813 | None:intergenic |
| TTTGACGGGGATGGACGAAC+GGG | 0.434895 | 3.1:-47530027 | MS.gene04542:CDS |
| AATGAAACAATTTGTTTCAC+CGG | 0.442034 | 3.1:-47529881 | MS.gene04542:CDS |
| AAATATAAACCGGTGGGGAG+TGG | 0.442813 | 3.1:-47530051 | MS.gene04542:CDS |
| TTCTTGTATTGGTGGAAAGT+GGG | 0.467059 | 3.1:+47530814 | None:intergenic |
| GATTCTTGAAAGAGTGCAAA+AGG | 0.467494 | 3.1:-47530355 | MS.gene04542:CDS |
| AAAATTAACAGCCTGAGAAC+CGG | 0.470302 | 3.1:+47530614 | None:intergenic |
| TTTATGATTCTCAACGAAAA+CGG | 0.486047 | 3.1:+47530534 | None:intergenic |
| GAGGAAGAAGAACAATAAGA+AGG | 0.486358 | 3.1:-47530791 | MS.gene04542:CDS |
| TTCATCCACCTCAGTTTCCC+CGG | 0.486727 | 3.1:+47529978 | None:intergenic |
| GATTCAATCTTAGCAGAAAC+CGG | 0.488724 | 3.1:+47529862 | None:intergenic |
| GCCTCGGTTGATGGAGGAAG+TGG | 0.496999 | 3.1:-47530084 | MS.gene04542:CDS |
| AGTATTACTTCCACTTGAAA+CGG | 0.497881 | 3.1:+47530107 | None:intergenic |
| GGGAGTGGATTTGACGGGGA+TGG | 0.504157 | 3.1:-47530036 | MS.gene04542:CDS |
| AGAAGAAGAAACTAAGATAT+GGG | 0.504906 | 3.1:-47529956 | MS.gene04542:CDS |
| ATTTGACGGGGATGGACGAA+CGG | 0.508427 | 3.1:-47530028 | MS.gene04542:CDS |
| TCTTGAGAAGAATCAGATAG+AGG | 0.509178 | 3.1:+47528250 | None:intergenic |
| CGCAGAAGAGACTTATTTGG+AGG | 0.512178 | 3.1:-47528359 | MS.gene04542:CDS |
| GCAGCATAATAGGTGTTGCT+AGG | 0.514052 | 3.1:+47528322 | None:intergenic |
| TTTAGCTGCGGTTGCAACCC+CGG | 0.514830 | 3.1:-47530211 | MS.gene04542:CDS |
| AAGGAAGAATTCAGAGATGT+TGG | 0.520097 | 3.1:-47530495 | MS.gene04542:CDS |
| TCGTTGCACATGAATTTGAC+AGG | 0.520886 | 3.1:-47529732 | MS.gene04542:intron |
| CCGGTGGGGAGTGGATTTGA+CGG | 0.530493 | 3.1:-47530042 | MS.gene04542:CDS |
| CAGAACTTGTTTATCAAACA+GGG | 0.550923 | 3.1:-47529813 | MS.gene04542:CDS |
| CCGCGGTGGGAAATATAAAC+CGG | 0.553139 | 3.1:-47530061 | MS.gene04542:CDS |
| CAAATCTCGAAACAAATTCG+TGG | 0.554821 | 3.1:-47530907 | MS.gene04542:CDS |
| GATGGAGGAAGTGGCCGCGG+TGG | 0.560003 | 3.1:-47530075 | MS.gene04542:CDS |
| CCTGTGAAGAACAAAATTGG+TGG | 0.560358 | 3.1:+47530854 | None:intergenic |
| ATGGTGGTGTTTATAATACC+GGG | 0.560707 | 3.1:-47529996 | MS.gene04542:CDS |
| CTTTCCACCAATACAAGAAG+AGG | 0.562841 | 3.1:-47530810 | MS.gene04542:CDS |
| ATGGAGGAAGTGGCCGCGGT+GGG | 0.564800 | 3.1:-47530074 | MS.gene04542:CDS |
| ATGGGAATCTATGGTTGAAG+AGG | 0.565563 | 3.1:-47529938 | MS.gene04542:CDS |
| CTTCAAGAGAGCTATAGAAG+TGG | 0.567749 | 3.1:-47528452 | MS.gene04542:CDS |
| AGGAAGAAGAACAATAAGAA+GGG | 0.569239 | 3.1:-47530790 | MS.gene04542:CDS |
| GTTGATGGAGGAAGTGGCCG+CGG | 0.570618 | 3.1:-47530078 | MS.gene04542:CDS |
| AAGTGGAAGTAATACTGCCT+CGG | 0.571756 | 3.1:-47530100 | MS.gene04542:CDS |
| CGATCGAAGAAGTCTCCACC+GGG | 0.571840 | 3.1:+47530193 | None:intergenic |
| AAAACGTTCTCCGTTTCAAG+TGG | 0.573365 | 3.1:-47530117 | MS.gene04542:CDS |
| CGGTGGGGAGTGGATTTGAC+GGG | 0.580234 | 3.1:-47530041 | MS.gene04542:CDS |
| TTATAAGCTTCAGCATCTGG+TGG | 0.586028 | 3.1:+47528427 | None:intergenic |
| AGAACCGGAAGAACAAGAAG+AGG | 0.587508 | 3.1:+47530629 | None:intergenic |
| TTTCACTTTACAAATGAGAG+AGG | 0.591681 | 3.1:-47530403 | MS.gene04542:CDS |
| GGTGGATCGAAACAAATTCG+TGG | 0.595714 | 3.1:+47530872 | None:intergenic |
| CCGTCAAATCCACTCCCCAC+CGG | 0.599440 | 3.1:+47530042 | None:intergenic |
| AAAACAGAAACTGAAGCTGA+AGG | 0.601124 | 3.1:-47530514 | MS.gene04542:CDS |
| AAATCTCGAAACAAATTCGT+GGG | 0.601379 | 3.1:-47530906 | MS.gene04542:CDS |
| ACGATCGAAGAAGTCTCCAC+CGG | 0.601465 | 3.1:+47530192 | None:intergenic |
| GTGGATCGAAACAAATTCGT+GGG | 0.604278 | 3.1:+47530873 | None:intergenic |
| ATTATCGCTGGTATGAACTC+CGG | 0.616564 | 3.1:+47530585 | None:intergenic |
| TCTATGGAATACTGGTGGAG+AGG | 0.619309 | 3.1:-47528284 | MS.gene04542:CDS |
| GCTAGTGTTTGTGATGAAGA+TGG | 0.620714 | 3.1:+47530954 | None:intergenic |
| CGGTGGGAAATATAAACCGG+TGG | 0.621319 | 3.1:-47530058 | MS.gene04542:CDS |
| TAATACCGGGGAAACTGAGG+TGG | 0.623470 | 3.1:-47529983 | MS.gene04542:CDS |
| AGAGGCTTATAGAAACGAAG+AGG | 0.625061 | 3.1:-47529920 | MS.gene04542:CDS |
| ATCGCTGGTATGAACTCCGG+TGG | 0.626009 | 3.1:+47530588 | None:intergenic |
| GGTGGGAAATATAAACCGGT+GGG | 0.628312 | 3.1:-47530057 | MS.gene04542:CDS |
| AAGTAACAACGCTTTAGCTG+CGG | 0.636246 | 3.1:-47530223 | MS.gene04542:CDS |
| TTATAATACCGGGGAAACTG+AGG | 0.637831 | 3.1:-47529986 | MS.gene04542:CDS |
| GAGGCTTATAGAAACGAAGA+GGG | 0.638175 | 3.1:-47529919 | MS.gene04542:CDS |
| AATACTGCCTCGGTTGATGG+AGG | 0.639281 | 3.1:-47530090 | MS.gene04542:CDS |
| GCCACTTCCTCCATCAACCG+AGG | 0.643564 | 3.1:+47530083 | None:intergenic |
| AGCTGCGGTTGCAACCCCGG+TGG | 0.647798 | 3.1:-47530208 | MS.gene04542:CDS |
| ATAACATAAACCATTAACGT+TGG | 0.667251 | 3.1:+47530282 | None:intergenic |
| CTCCAAATAAGTCTCTTCTG+CGG | 0.688717 | 3.1:+47528360 | None:intergenic |
| TGGTGGTGTTTATAATACCG+GGG | 0.695379 | 3.1:-47529995 | MS.gene04542:CDS |
| TGAACGAAAAGCGAACAGTG+TGG | 0.718507 | 3.1:-47530562 | MS.gene04542:CDS |
| CCGGTTTATATTTCCCACCG+CGG | 0.731142 | 3.1:+47530061 | None:intergenic |
| GTGGGAAATATAAACCGGTG+GGG | 0.746911 | 3.1:-47530056 | MS.gene04542:CDS |
| GGTGGGGAGTGGATTTGACG+GGG | 0.753129 | 3.1:-47530040 | MS.gene04542:CDS |
| GATCGAAGAAGTCTCCACCG+GGG | 0.831475 | 3.1:+47530194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAAAAATAGATGTTAT+TGG | - | chr3.1:47529828-47529847 | MS.gene04542:CDS | 15.0% |
| !! | AGTATACTATTGAAATATAT+AGG | - | chr3.1:47529795-47529814 | MS.gene04542:CDS | 15.0% |
| !! | ATTGAAAAATAGATGTTATT+GGG | - | chr3.1:47529829-47529848 | MS.gene04542:CDS | 15.0% |
| !!! | TTTTTCTCTTATAATAGTAT+TGG | + | chr3.1:47529954-47529973 | None:intergenic | 15.0% |
| !!! | TTTTTTCCTTATAATAGTAT+TGG | + | chr3.1:47529987-47530006 | None:intergenic | 15.0% |
| !! | AAATCACCAATACTATTATA+AGG | - | chr3.1:47529978-47529997 | MS.gene04542:CDS | 20.0% |
| !! | TAAAAATTGAAAAGATGCTA+TGG | + | chr3.1:47529549-47529568 | None:intergenic | 20.0% |
| !!! | AGATTTATTATGCTATTTTG+AGG | - | chr3.1:47530404-47530423 | MS.gene04542:CDS | 20.0% |
| !!! | AGTTGTATAATTGACAATTT+TGG | - | chr3.1:47530737-47530756 | MS.gene04542:CDS | 20.0% |
| !!! | ATCTGATTTTATTCCATAAT+TGG | + | chr3.1:47530388-47530407 | None:intergenic | 20.0% |
| !!! | TTTTGTATGAAGATTTACAA+GGG | - | chr3.1:47528868-47528887 | MS.gene04542:intron | 20.0% |
| !!! | TTTTTTCCTTCTTCTATTTT+TGG | + | chr3.1:47530439-47530458 | None:intergenic | 20.0% |
| ! | AAACAATGCAATTATGGATT+TGG | - | chr3.1:47528569-47528588 | MS.gene04542:intron | 25.0% |
| ! | AAGAAGAAGAAACTAAGATA+TGG | - | chr3.1:47529288-47529307 | MS.gene04542:intron | 25.0% |
| ! | AGAAGAAGAAACTAAGATAT+GGG | - | chr3.1:47529289-47529308 | MS.gene04542:intron | 25.0% |
| ! | ATAACATAAACCATTAACGT+TGG | + | chr3.1:47528966-47528985 | None:intergenic | 25.0% |
| ! | ATCTAACCAAAAATAGAAGA+AGG | - | chr3.1:47530430-47530449 | MS.gene04542:CDS | 25.0% |
| ! | TCTTGATGAATATTGAAAGA+GGG | - | chr3.1:47530475-47530494 | MS.gene04542:CDS | 25.0% |
| ! | TGTTGTTATAATCCTATTGT+TGG | - | chr3.1:47529768-47529787 | MS.gene04542:CDS | 25.0% |
| ! | TTTATGATTCTCAACGAAAA+CGG | + | chr3.1:47528714-47528733 | None:intergenic | 25.0% |
| !! | AATGAAACAATTTGTTTCAC+CGG | - | chr3.1:47529364-47529383 | MS.gene04542:intron | 25.0% |
| !! | ATTTTTCACTTTCCATAAGA+AGG | + | chr3.1:47530855-47530874 | None:intergenic | 25.0% |
| !! | CAAATTATGCTCATTTTCTA+TGG | - | chr3.1:47530945-47530964 | MS.gene04542:CDS | 25.0% |
| !! | CTCTTATAATAGTATTGGAA+GGG | + | chr3.1:47529949-47529968 | None:intergenic | 25.0% |
| !! | CTTTTGTATGAAGATTTACA+AGG | - | chr3.1:47528867-47528886 | MS.gene04542:intron | 25.0% |
| !! | GAAAGTGAAAAATGATTTGT+GGG | - | chr3.1:47530862-47530881 | MS.gene04542:CDS | 25.0% |
| !! | TCTCTTATAATAGTATTGGA+AGG | + | chr3.1:47529950-47529969 | None:intergenic | 25.0% |
| !! | TGTATGCTTTTGAATATTCA+GGG | - | chr3.1:47530760-47530779 | MS.gene04542:CDS | 25.0% |
| !!! | AATTTGCATTGGAGATTTTT+TGG | - | chr3.1:47530351-47530370 | MS.gene04542:CDS | 25.0% |
| !!! | TAGTTTGTATTTTAAGCTAC+CGG | - | chr3.1:47530310-47530329 | MS.gene04542:CDS | 25.0% |
| AAATCTCGAAACAAATTCGT+GGG | - | chr3.1:47528339-47528358 | MS.gene04542:CDS | 30.0% | |
| AACTAAGATATGGGAATCTA+TGG | - | chr3.1:47529298-47529317 | MS.gene04542:intron | 30.0% | |
| AGGAAGAAGAACAATAAGAA+GGG | - | chr3.1:47528455-47528474 | MS.gene04542:CDS | 30.0% | |
| AGTATTACTTCCACTTGAAA+CGG | + | chr3.1:47529141-47529160 | None:intergenic | 30.0% | |
| ATAAATACGCAACCTTCTTA+TGG | - | chr3.1:47530840-47530859 | MS.gene04542:CDS | 30.0% | |
| ATCTAGTCAATCTTATAGAC+TGG | + | chr3.1:47530065-47530084 | None:intergenic | 30.0% | |
| ATGCACTAAACAATTTGCAT+TGG | - | chr3.1:47530340-47530359 | MS.gene04542:CDS | 30.0% | |
| CTTATGAAAAATCATGTGCT+TGG | + | chr3.1:47530638-47530657 | None:intergenic | 30.0% | |
| CTTGATGAATATTGAAAGAG+GGG | - | chr3.1:47530476-47530495 | MS.gene04542:CDS | 30.0% | |
| GGAAAGTGAAAAATGATTTG+TGG | - | chr3.1:47530861-47530880 | MS.gene04542:CDS | 30.0% | |
| GTCTTGATGAATATTGAAAG+AGG | - | chr3.1:47530474-47530493 | MS.gene04542:CDS | 30.0% | |
| GTTATAATCCTATTGTTGGT+TGG | - | chr3.1:47529772-47529791 | MS.gene04542:CDS | 30.0% | |
| TTATTATAAGCTTCAGCATC+TGG | + | chr3.1:47530824-47530843 | None:intergenic | 30.0% | |
| TTTCACTTTACAAATGAGAG+AGG | - | chr3.1:47528842-47528861 | MS.gene04542:intron | 30.0% | |
| ! | AATGGTGGTGTTTATAATAC+CGG | - | chr3.1:47529248-47529267 | MS.gene04542:intron | 30.0% |
| ! | ACAGAACTTGTTTATCAAAC+AGG | - | chr3.1:47529431-47529450 | MS.gene04542:intron | 30.0% |
| ! | AGCATAATTTGCAGCATAAT+AGG | + | chr3.1:47530936-47530955 | None:intergenic | 30.0% |
| ! | CAAGCACATGATTTTTCATA+AGG | - | chr3.1:47530636-47530655 | MS.gene04542:CDS | 30.0% |
| ! | CAGAACTTGTTTATCAAACA+GGG | - | chr3.1:47529432-47529451 | MS.gene04542:intron | 30.0% |
| ! | CATAATTGCATTGTTTTCGT+CGG | + | chr3.1:47528565-47528584 | None:intergenic | 30.0% |
| ! | GGAGTTAAGTTTTCCAATTA+TGG | - | chr3.1:47530372-47530391 | MS.gene04542:CDS | 30.0% |
| ! | GTGTATGCTTTTGAATATTC+AGG | - | chr3.1:47530759-47530778 | MS.gene04542:CDS | 30.0% |
| ! | TTCATTTTACCTCCCAATTT+TGG | - | chr3.1:47529607-47529626 | MS.gene04542:intron | 30.0% |
| !! | GAAGAAAGCTTTTTCTTCTA+TGG | - | chr3.1:47528794-47528813 | MS.gene04542:intron | 30.0% |
| !!! | ATATTTTCTTTTGAGACACG+AGG | + | chr3.1:47530577-47530596 | None:intergenic | 30.0% |
| !!! | TATTTTCTTTTGAGACACGA+GGG | + | chr3.1:47530576-47530595 | None:intergenic | 30.0% |
| AAAACAGAAACTGAAGCTGA+AGG | - | chr3.1:47528731-47528750 | MS.gene04542:intron | 35.0% | |
| AAAATTAACAGCCTGAGAAC+CGG | + | chr3.1:47528634-47528653 | None:intergenic | 35.0% | |
| AAGGAAGAATTCAGAGATGT+TGG | - | chr3.1:47528750-47528769 | MS.gene04542:intron | 35.0% | |
| AATATTGAAAGAGGGGTTTG+CGG | - | chr3.1:47530483-47530502 | MS.gene04542:CDS | 35.0% | |
| ACCAATGAAGCTACCAAAAT+TGG | + | chr3.1:47529623-47529642 | None:intergenic | 35.0% | |
| AGACCTGTGAAGAACAAAAT+TGG | + | chr3.1:47528397-47528416 | None:intergenic | 35.0% | |
| AGTATACTCCAACCAACAAT+AGG | + | chr3.1:47529783-47529802 | None:intergenic | 35.0% | |
| CAAATCTCGAAACAAATTCG+TGG | - | chr3.1:47528338-47528357 | MS.gene04542:CDS | 35.0% | |
| CCAATGAAGCTACCAAAATT+GGG | + | chr3.1:47529622-47529641 | None:intergenic | 35.0% | |
| CGACGAAAACAATGCAATTA+TGG | - | chr3.1:47528563-47528582 | MS.gene04542:intron | 35.0% | |
| GAGGAAGAAGAACAATAAGA+AGG | - | chr3.1:47528454-47528473 | MS.gene04542:CDS | 35.0% | |
| GATTCAATCTTAGCAGAAAC+CGG | + | chr3.1:47529386-47529405 | None:intergenic | 35.0% | |
| TCTTCTTCCTCTTCTTGTAT+TGG | + | chr3.1:47528445-47528464 | None:intergenic | 35.0% | |
| TCTTGAGAAGAATCAGATAG+AGG | + | chr3.1:47530998-47531017 | None:intergenic | 35.0% | |
| TGTTTAGTGCATCTAGAAAC+CGG | + | chr3.1:47530332-47530351 | None:intergenic | 35.0% | |
| TTATAGAAACGAAGAGGGTT+TGG | - | chr3.1:47529331-47529350 | MS.gene04542:intron | 35.0% | |
| TTCACATACACCAACGTTAA+TGG | - | chr3.1:47528953-47528972 | MS.gene04542:intron | 35.0% | |
| TTGTTTCGAGATTTGGATGA+TGG | + | chr3.1:47528333-47528352 | None:intergenic | 35.0% | |
| ! | AAATGCACGCTTCTTTTGTT+TGG | - | chr3.1:47528913-47528932 | MS.gene04542:intron | 35.0% |
| ! | ATGGTGGTGTTTATAATACC+GGG | - | chr3.1:47529249-47529268 | MS.gene04542:intron | 35.0% |
| ! | CACGAATTTGTTTCGAGATT+TGG | + | chr3.1:47528340-47528359 | None:intergenic | 35.0% |
| ! | CATTTTCTATGGAATACTGG+TGG | - | chr3.1:47530956-47530975 | MS.gene04542:CDS | 35.0% |
| ! | CGTTGTTACTTGACATAGAA+TGG | + | chr3.1:47529013-47529032 | None:intergenic | 35.0% |
| ! | GATTCTTGAAAGAGTGCAAA+AGG | - | chr3.1:47528890-47528909 | MS.gene04542:intron | 35.0% |
| ! | GCTCATTTTCTATGGAATAC+TGG | - | chr3.1:47530953-47530972 | MS.gene04542:CDS | 35.0% |
| ! | TTCTTGTATTGGTGGAAAGT+GGG | + | chr3.1:47528434-47528453 | None:intergenic | 35.0% |
| !! | GCAAGTAACAAAGCATTGTT+TGG | + | chr3.1:47529470-47529489 | None:intergenic | 35.0% |
| AAAACGTTCTCCGTTTCAAG+TGG | - | chr3.1:47529128-47529147 | MS.gene04542:intron | 40.0% | |
| AAGTAACAACGCTTTAGCTG+CGG | - | chr3.1:47529022-47529041 | MS.gene04542:intron | 40.0% | |
| AAGTGGAAGTAATACTGCCT+CGG | - | chr3.1:47529145-47529164 | MS.gene04542:intron | 40.0% | |
| ACTTCCTCTTCTTGTTCTTC+CGG | - | chr3.1:47528612-47528631 | MS.gene04542:intron | 40.0% | |
| AGAGGCTTATAGAAACGAAG+AGG | - | chr3.1:47529325-47529344 | MS.gene04542:intron | 40.0% | |
| ATGAAGCTACCAAAATTGGG+AGG | + | chr3.1:47529619-47529638 | None:intergenic | 40.0% | |
| ATGGGAATCTATGGTTGAAG+AGG | - | chr3.1:47529307-47529326 | MS.gene04542:intron | 40.0% | |
| ATTATCGCTGGTATGAACTC+CGG | + | chr3.1:47528663-47528682 | None:intergenic | 40.0% | |
| CCTGTGAAGAACAAAATTGG+TGG | + | chr3.1:47528394-47528413 | None:intergenic | 40.0% | |
| CTCCAAATAAGTCTCTTCTG+CGG | + | chr3.1:47530888-47530907 | None:intergenic | 40.0% | |
| CTTCAAGAGAGCTATAGAAG+TGG | - | chr3.1:47530793-47530812 | MS.gene04542:CDS | 40.0% | |
| CTTTCCACCAATACAAGAAG+AGG | - | chr3.1:47528435-47528454 | MS.gene04542:CDS | 40.0% | |
| GAGGCTTATAGAAACGAAGA+GGG | - | chr3.1:47529326-47529345 | MS.gene04542:intron | 40.0% | |
| GCTAGTGTTTGTGATGAAGA+TGG | + | chr3.1:47528294-47528313 | None:intergenic | 40.0% | |
| GGAGGAGAAGTAAATAAGTC+TGG | + | chr3.1:47530545-47530564 | None:intergenic | 40.0% | |
| GTGGATCGAAACAAATTCGT+GGG | + | chr3.1:47528375-47528394 | None:intergenic | 40.0% | |
| TCGTTGCACATGAATTTGAC+AGG | - | chr3.1:47529513-47529532 | MS.gene04542:intron | 40.0% | |
| TCTTCCTCTTCTTGTATTGG+TGG | + | chr3.1:47528442-47528461 | None:intergenic | 40.0% | |
| TTATAAGCTTCAGCATCTGG+TGG | + | chr3.1:47530821-47530840 | None:intergenic | 40.0% | |
| TTATAATACCGGGGAAACTG+AGG | - | chr3.1:47529259-47529278 | MS.gene04542:intron | 40.0% | |
| ! | ATAAGTCTGGCTCATGAATC+AGG | + | chr3.1:47530532-47530551 | None:intergenic | 40.0% |
| ! | CATTGTTTTCGTCGGAGATT+TGG | + | chr3.1:47528557-47528576 | None:intergenic | 40.0% |
| ! | CCACCAATTTTGTTCTTCAC+AGG | - | chr3.1:47528391-47528410 | MS.gene04542:CDS | 40.0% |
| ! | CTTCTTGTATTGGTGGAAAG+TGG | + | chr3.1:47528435-47528454 | None:intergenic | 40.0% |
| ! | GCTTTTCGTTCAATTATCGC+TGG | + | chr3.1:47528675-47528694 | None:intergenic | 40.0% |
| ! | TGGTGGTGTTTATAATACCG+GGG | - | chr3.1:47529250-47529269 | MS.gene04542:intron | 40.0% |
| !! | CCCAATTTTGGTAGCTTCAT+TGG | - | chr3.1:47529619-47529638 | MS.gene04542:intron | 40.0% |
| AAATATAAACCGGTGGGGAG+TGG | - | chr3.1:47529194-47529213 | MS.gene04542:intron | 45.0% | |
| AGAACCGGAAGAACAAGAAG+AGG | + | chr3.1:47528619-47528638 | None:intergenic | 45.0% | |
| AGTAATACTGCCTCGGTTGA+TGG | - | chr3.1:47529152-47529171 | MS.gene04542:intron | 45.0% | |
| ATGTGCTTGGTACGACTGAA+AGG | + | chr3.1:47530625-47530644 | None:intergenic | 45.0% | |
| CGCAGAAGAGACTTATTTGG+AGG | - | chr3.1:47530886-47530905 | MS.gene04542:CDS | 45.0% | |
| GGTGGATCGAAACAAATTCG+TGG | + | chr3.1:47528376-47528395 | None:intergenic | 45.0% | |
| GGTGGGAAATATAAACCGGT+GGG | - | chr3.1:47529188-47529207 | MS.gene04542:intron | 45.0% | |
| GTGGGAAATATAAACCGGTG+GGG | - | chr3.1:47529189-47529208 | MS.gene04542:intron | 45.0% | |
| TCTATGGAATACTGGTGGAG+AGG | - | chr3.1:47530961-47530980 | MS.gene04542:CDS | 45.0% | |
| TCTTCACAGGTCTCGATCTT+TGG | - | chr3.1:47528404-47528423 | MS.gene04542:CDS | 45.0% | |
| TGAACGAAAAGCGAACAGTG+TGG | - | chr3.1:47528683-47528702 | MS.gene04542:intron | 45.0% | |
| TTCTTGTTCTTCCGGTTCTC+AGG | - | chr3.1:47528620-47528639 | MS.gene04542:intron | 45.0% | |
| ! | GGCTGTTAATTTTGAGCCAC+CGG | - | chr3.1:47528641-47528660 | MS.gene04542:intron | 45.0% |
| !! | CGAACGGGTTTTTCTAATGG+TGG | - | chr3.1:47529233-47529252 | MS.gene04542:intron | 45.0% |
| !! | GCAGCATAATAGGTGTTGCT+AGG | + | chr3.1:47530926-47530945 | None:intergenic | 45.0% |
| !! | GGACGAACGGGTTTTTCTAA+TGG | - | chr3.1:47529230-47529249 | MS.gene04542:intron | 45.0% |
| ACGATCGAAGAAGTCTCCAC+CGG | + | chr3.1:47529056-47529075 | None:intergenic | 50.0% | |
| ATTTGACGGGGATGGACGAA+CGG | - | chr3.1:47529217-47529236 | MS.gene04542:intron | 50.0% | |
| CCGCGGTGGGAAATATAAAC+CGG | - | chr3.1:47529184-47529203 | MS.gene04542:intron | 50.0% | |
| CCGGTTTATATTTCCCACCG+CGG | + | chr3.1:47529187-47529206 | None:intergenic | 50.0% | |
| CGGTGGGAAATATAAACCGG+TGG | - | chr3.1:47529187-47529206 | MS.gene04542:intron | 50.0% | |
| GGCCGCAGAAGAGACTTATT+TGG | - | chr3.1:47530883-47530902 | MS.gene04542:CDS | 50.0% | |
| GGCTCATGAATCAGGTACAC+TGG | + | chr3.1:47530524-47530543 | None:intergenic | 50.0% | |
| TAATACCGGGGAAACTGAGG+TGG | - | chr3.1:47529262-47529281 | MS.gene04542:intron | 50.0% | |
| TTCATCCACCTCAGTTTCCC+CGG | + | chr3.1:47529270-47529289 | None:intergenic | 50.0% | |
| !! | AATACTGCCTCGGTTGATGG+AGG | - | chr3.1:47529155-47529174 | MS.gene04542:intron | 50.0% |
| ATCGCTGGTATGAACTCCGG+TGG | + | chr3.1:47528660-47528679 | None:intergenic | 55.0% | |
| CGATCGAAGAAGTCTCCACC+GGG | + | chr3.1:47529055-47529074 | None:intergenic | 55.0% | |
| GATCGAAGAAGTCTCCACCG+GGG | + | chr3.1:47529054-47529073 | None:intergenic | 55.0% | |
| TTTAGCTGCGGTTGCAACCC+CGG | - | chr3.1:47529034-47529053 | MS.gene04542:intron | 55.0% | |
| TTTGACGGGGATGGACGAAC+GGG | - | chr3.1:47529218-47529237 | MS.gene04542:intron | 55.0% | |
| CCGTCAAATCCACTCCCCAC+CGG | + | chr3.1:47529206-47529225 | None:intergenic | 60.0% | |
| GCCACTTCCTCCATCAACCG+AGG | + | chr3.1:47529165-47529184 | None:intergenic | 60.0% | |
| ! | CCGGTGGGGAGTGGATTTGA+CGG | - | chr3.1:47529203-47529222 | MS.gene04542:intron | 60.0% |
| ! | CGGTGGGGAGTGGATTTGAC+GGG | - | chr3.1:47529204-47529223 | MS.gene04542:intron | 60.0% |
| ! | GGGAGTGGATTTGACGGGGA+TGG | - | chr3.1:47529209-47529228 | MS.gene04542:intron | 60.0% |
| ! | GGTGGGGAGTGGATTTGACG+GGG | - | chr3.1:47529205-47529224 | MS.gene04542:intron | 60.0% |
| ! | GTTGATGGAGGAAGTGGCCG+CGG | - | chr3.1:47529167-47529186 | MS.gene04542:intron | 60.0% |
| !! | GCCTCGGTTGATGGAGGAAG+TGG | - | chr3.1:47529161-47529180 | MS.gene04542:intron | 60.0% |
| !! | TGAGACACGAGGGCATCACG+TGG | + | chr3.1:47530566-47530585 | None:intergenic | 60.0% |
| ATGGAGGAAGTGGCCGCGGT+GGG | - | chr3.1:47529171-47529190 | MS.gene04542:intron | 65.0% | |
| !! | GACACGAGGGCATCACGTGG+AGG | + | chr3.1:47530563-47530582 | None:intergenic | 65.0% |
| AGCTGCGGTTGCAACCCCGG+TGG | - | chr3.1:47529037-47529056 | MS.gene04542:intron | 70.0% | |
| GATGGAGGAAGTGGCCGCGG+TGG | - | chr3.1:47529170-47529189 | MS.gene04542:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 47528243 | 47531024 | 47528243 | ID=MS.gene04542 |
| chr3.1 | mRNA | 47528243 | 47531024 | 47528243 | ID=MS.gene04542.t1;Parent=MS.gene04542 |
| chr3.1 | exon | 47529733 | 47531024 | 47529733 | ID=MS.gene04542.t1.exon1;Parent=MS.gene04542.t1 |
| chr3.1 | CDS | 47529733 | 47531024 | 47529733 | ID=cds.MS.gene04542.t1;Parent=MS.gene04542.t1 |
| chr3.1 | exon | 47528243 | 47528486 | 47528243 | ID=MS.gene04542.t1.exon2;Parent=MS.gene04542.t1 |
| chr3.1 | CDS | 47528243 | 47528486 | 47528243 | ID=cds.MS.gene04542.t1;Parent=MS.gene04542.t1 |
| Gene Sequence |
| Protein sequence |
