Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040531.t1 | XP_003596136.2 | 97.4 | 622 | 15 | 1 | 1 | 622 | 1 | 621 | 0.00E+00 | 1171.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040531.t1 | Q2RAC5 | 58.1 | 546 | 137 | 13 | 1 | 537 | 1 | 463 | 1.1e-145 | 518.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040531.t1 | G7ITD0 | 97.4 | 622 | 15 | 1 | 1 | 622 | 1 | 621 | 0.0e+00 | 1171.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene67884 | MS.gene040531 | PPI |
MS.gene040531 | MS.gene028366 | PPI |
MS.gene018251 | MS.gene040531 | PPI |
MS.gene040531 | MS.gene37179 | PPI |
MS.gene55900 | MS.gene040531 | PPI |
MS.gene36424 | MS.gene040531 | PPI |
MS.gene28739 | MS.gene040531 | PPI |
MS.gene35086 | MS.gene040531 | PPI |
MS.gene040531 | MS.gene00063 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040531.t1 | MTR_2g068690 | 97.428 | 622 | 15 | 1 | 1 | 622 | 1 | 621 | 0.0 | 1251 |
MS.gene040531.t1 | MTR_4g083690 | 54.711 | 605 | 212 | 13 | 1 | 598 | 1 | 550 | 0.0 | 569 |
MS.gene040531.t1 | MTR_7g094070 | 50.581 | 516 | 182 | 8 | 33 | 546 | 4 | 448 | 1.66e-159 | 465 |
MS.gene040531.t1 | MTR_7g094060 | 42.661 | 436 | 170 | 14 | 148 | 581 | 2 | 359 | 1.82e-70 | 233 |
MS.gene040531.t1 | MTR_1g104820 | 50.000 | 234 | 115 | 1 | 34 | 267 | 141 | 372 | 2.16e-69 | 229 |
MS.gene040531.t1 | MTR_1g104820 | 50.000 | 234 | 115 | 1 | 34 | 267 | 202 | 433 | 7.09e-69 | 230 |
MS.gene040531.t1 | MTR_1g104820 | 46.927 | 179 | 95 | 0 | 34 | 212 | 141 | 319 | 1.43e-52 | 183 |
MS.gene040531.t1 | MTR_1g104820 | 47.126 | 174 | 92 | 0 | 34 | 207 | 141 | 314 | 9.18e-52 | 181 |
MS.gene040531.t1 | MTR_5g055170 | 31.317 | 281 | 181 | 5 | 43 | 319 | 18 | 290 | 1.29e-40 | 153 |
MS.gene040531.t1 | MTR_5g010140 | 32.743 | 226 | 148 | 3 | 43 | 267 | 18 | 240 | 8.24e-38 | 145 |
MS.gene040531.t1 | MTR_5g055170 | 28.807 | 243 | 161 | 5 | 81 | 319 | 1 | 235 | 4.46e-29 | 119 |
MS.gene040531.t1 | MTR_7g055650 | 26.906 | 223 | 146 | 3 | 50 | 272 | 31 | 236 | 7.36e-21 | 92.8 |
MS.gene040531.t1 | MTR_5g010140 | 35.849 | 106 | 65 | 2 | 162 | 267 | 31 | 133 | 1.81e-16 | 81.3 |
MS.gene040531.t1 | MTR_7g055650 | 26.238 | 202 | 132 | 3 | 50 | 251 | 31 | 215 | 6.79e-16 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040531.t1 | AT5G45190 | 56.101 | 631 | 213 | 20 | 1 | 621 | 1 | 577 | 0.0 | 589 |
MS.gene040531.t1 | AT5G45190 | 54.673 | 642 | 216 | 21 | 1 | 621 | 1 | 588 | 0.0 | 573 |
MS.gene040531.t1 | AT4G19600 | 52.556 | 626 | 204 | 18 | 1 | 619 | 1 | 540 | 0.0 | 543 |
MS.gene040531.t1 | AT5G45190 | 51.341 | 522 | 190 | 20 | 110 | 621 | 1 | 468 | 8.31e-137 | 408 |
MS.gene040531.t1 | AT4G19560 | 62.937 | 286 | 90 | 6 | 33 | 308 | 31 | 310 | 2.48e-108 | 334 |
MS.gene040531.t1 | AT1G35440 | 51.230 | 244 | 110 | 2 | 33 | 274 | 7 | 243 | 2.85e-84 | 264 |
MS.gene040531.t1 | AT1G27630 | 53.061 | 245 | 111 | 3 | 25 | 268 | 25 | 266 | 7.32e-82 | 261 |
MS.gene040531.t1 | AT1G27630 | 52.966 | 236 | 107 | 3 | 25 | 259 | 25 | 257 | 6.74e-79 | 251 |
MS.gene040531.t1 | AT4G19560 | 56.744 | 215 | 77 | 6 | 104 | 308 | 30 | 238 | 1.03e-60 | 207 |
MS.gene040531.t1 | AT1G27630 | 48.913 | 184 | 91 | 2 | 85 | 268 | 1 | 181 | 1.70e-51 | 177 |
MS.gene040531.t1 | AT1G27630 | 48.913 | 184 | 91 | 2 | 85 | 268 | 1 | 181 | 1.70e-51 | 177 |
MS.gene040531.t1 | AT1G27630 | 48.913 | 184 | 91 | 2 | 85 | 268 | 1 | 181 | 1.70e-51 | 177 |
MS.gene040531.t1 | AT1G27630 | 48.913 | 184 | 91 | 2 | 85 | 268 | 1 | 181 | 1.70e-51 | 177 |
MS.gene040531.t1 | AT2G26430 | 33.333 | 237 | 151 | 5 | 33 | 267 | 9 | 240 | 4.10e-38 | 146 |
MS.gene040531.t1 | AT2G26430 | 33.333 | 237 | 151 | 5 | 33 | 267 | 9 | 240 | 1.27e-34 | 133 |
MS.gene040531.t1 | AT2G26430 | 31.746 | 189 | 123 | 4 | 81 | 267 | 1 | 185 | 1.25e-27 | 115 |
MS.gene040531.t1 | AT2G26430 | 31.746 | 189 | 123 | 4 | 81 | 267 | 1 | 185 | 1.25e-27 | 115 |
MS.gene040531.t1 | AT5G48640 | 25.248 | 202 | 134 | 2 | 70 | 271 | 3 | 187 | 5.34e-18 | 83.2 |
MS.gene040531.t1 | AT5G48630 | 24.686 | 239 | 163 | 4 | 50 | 288 | 31 | 252 | 2.09e-17 | 82.8 |
MS.gene040531.t1 | AT5G48630 | 25.095 | 263 | 173 | 6 | 33 | 288 | 10 | 255 | 2.47e-17 | 82.8 |
MS.gene040531.t1 | AT5G48640 | 25.854 | 205 | 135 | 3 | 67 | 271 | 48 | 235 | 1.44e-15 | 77.4 |
MS.gene040531.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 90 | 271 | 3 | 167 | 2.32e-13 | 69.3 |
MS.gene040531.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 90 | 271 | 3 | 167 | 2.32e-13 | 69.3 |
MS.gene040531.t1 | AT5G48640 | 23.626 | 182 | 122 | 2 | 90 | 271 | 3 | 167 | 2.32e-13 | 69.3 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTGTAAGTTGTCTTTATA+TGG | 0.243681 | 2.3:+27317382 | None:intergenic |
GCCATTGAAAGATGTGATTA+TGG | 0.256102 | 2.3:-27321622 | MS.gene040531:CDS |
TGTACATTTCTGCAAGATTT+AGG | 0.266146 | 2.3:-27327812 | MS.gene040531:CDS |
CCTGGCAGAAGTGGTGATTA+TGG | 0.278916 | 2.3:-27317475 | MS.gene040531:CDS |
GCCTCAACAAGAGGTTTATA+AGG | 0.291203 | 2.3:+27318304 | None:intergenic |
CCTCTTGCGACTGCTTGACT+TGG | 0.327109 | 2.3:+27316832 | None:intergenic |
GTCTGGGAATTACTGTTTGC+GGG | 0.342323 | 2.3:+27317598 | None:intergenic |
CCCTTCTGTCATTCTTTGCA+TGG | 0.347768 | 2.3:+27327425 | None:intergenic |
AGTAGTTCCTTCAGCATCAT+TGG | 0.349357 | 2.3:+27317684 | None:intergenic |
TTCCCCTCCACCGCTCTATC+AGG | 0.365657 | 2.3:+27316794 | None:intergenic |
AGGGTTGTTCTTGCAACTCT+TGG | 0.372663 | 2.3:-27318349 | MS.gene040531:CDS |
GTTCATACAGCTCGAGCATT+TGG | 0.379229 | 2.3:+27317725 | None:intergenic |
TGATTCATCTGCCGCCAATC+AGG | 0.380629 | 2.3:-27317518 | MS.gene040531:CDS |
CATCGGATGGGGAGAAGGTC+TGG | 0.383724 | 2.3:-27318039 | MS.gene040531:CDS |
TTTGTCATAGATTCTTTCTT+CGG | 0.388212 | 2.3:-27327453 | MS.gene040531:CDS |
AAACTTGGCAGCAAGGAATA+TGG | 0.389377 | 2.3:+27318078 | None:intergenic |
GCTTGGAATTTCGTAAATGA+TGG | 0.395244 | 2.3:-27318238 | MS.gene040531:CDS |
TTGAACTTATGCCTCCGGTC+TGG | 0.401990 | 2.3:+27317581 | None:intergenic |
TTGATTCTCTGAACTGCTGT+TGG | 0.406825 | 2.3:+27321570 | None:intergenic |
TCTTCCACAGCACTTGGATC+TGG | 0.413808 | 2.3:+27316902 | None:intergenic |
TGAACTTATGCCTCCGGTCT+GGG | 0.413958 | 2.3:+27317582 | None:intergenic |
TGATTATTGTGGTGAGGTCC+AGG | 0.416314 | 2.3:+27316752 | None:intergenic |
ATACTACCATCCTTATGATC+TGG | 0.422006 | 2.3:+27317241 | None:intergenic |
TGATGTCACCCCACGCCAAT+TGG | 0.422376 | 2.3:-27318005 | MS.gene040531:CDS |
GTTGCTCGTCTGCATGATCT+TGG | 0.426517 | 2.3:+27316957 | None:intergenic |
CACCCTGTGCTTTATTTCTG+TGG | 0.427340 | 2.3:+27317450 | None:intergenic |
CCTTCTGTCATTCTTTGCAT+GGG | 0.430728 | 2.3:+27327426 | None:intergenic |
TTACGAAATTATAAATAAGA+AGG | 0.431741 | 2.3:-27321595 | MS.gene040531:CDS |
CAGCAGAAACCCAGATCATA+AGG | 0.432101 | 2.3:-27317251 | MS.gene040531:CDS |
ACGCCCTTGCTCAAGTTGCT+TGG | 0.433562 | 2.3:-27318255 | MS.gene040531:CDS |
CTGGCAGAAGTGGTGATTAT+GGG | 0.434348 | 2.3:-27317474 | MS.gene040531:CDS |
CCTTGCTGCCAAGTTTCTAA+AGG | 0.438701 | 2.3:-27318071 | MS.gene040531:CDS |
CGAGCAACCTCATGGGGTAA+AGG | 0.439559 | 2.3:-27316942 | MS.gene040531:CDS |
CTCATGGCTGGATTGTTGCT+TGG | 0.442208 | 2.3:-27328004 | MS.gene040531:CDS |
CTCTTGCGACTGCTTGACTT+GGG | 0.444830 | 2.3:+27316833 | None:intergenic |
AGCAGTCGCAAGAGGAAAGC+AGG | 0.445662 | 2.3:-27316824 | MS.gene040531:CDS |
TCAAATCAATACCATCTCCT+TGG | 0.446444 | 2.3:+27327864 | None:intergenic |
GGCTCCAGCTGCAATGTGAT+GGG | 0.448075 | 2.3:+27318099 | None:intergenic |
ATGAGATCTCGGTCTGATAA+TGG | 0.448599 | 2.3:-27317346 | MS.gene040531:CDS |
AGAAGAGTAAGCAAGATAGA+AGG | 0.455520 | 2.3:-27317039 | MS.gene040531:CDS |
GCAGTTTCATCATTACTAGT+TGG | 0.458552 | 2.3:+27317622 | None:intergenic |
ACTGGAAGATGGAATAGAAT+TGG | 0.458651 | 2.3:-27317077 | MS.gene040531:CDS |
GACGGGACGCCCAACCTGAT+TGG | 0.460004 | 2.3:+27317504 | None:intergenic |
GAGCAACCTCATGGGGTAAA+GGG | 0.460342 | 2.3:-27316941 | MS.gene040531:CDS |
TACTACCATCCTTATGATCT+GGG | 0.461140 | 2.3:+27317242 | None:intergenic |
AATGATGCTGAAGGAACTAC+TGG | 0.463175 | 2.3:-27317682 | MS.gene040531:CDS |
TCACCTTCTTCCACAGCACT+TGG | 0.464204 | 2.3:+27316896 | None:intergenic |
TGATCTCATTGAGAGGGAAC+TGG | 0.466070 | 2.3:-27317095 | MS.gene040531:CDS |
CGACTGCTTGACTTGGGTGA+TGG | 0.466853 | 2.3:+27316839 | None:intergenic |
GGGCGTCCCGTCTCTAATCC+TGG | 0.467257 | 2.3:-27317493 | MS.gene040531:CDS |
GAGTATCTTTGAGAACCAAC+TGG | 0.469420 | 2.3:+27327956 | None:intergenic |
TATGCTTAGCCGGCCTCCTC+AGG | 0.472117 | 2.3:-27317221 | MS.gene040531:CDS |
CTCACCTGATAGAGCGGTGG+AGG | 0.473763 | 2.3:-27316798 | MS.gene040531:CDS |
TATGGAAGAGGTTCATGCTC+AGG | 0.475779 | 2.3:+27317400 | None:intergenic |
CTTGGAATTTCGTAAATGAT+GGG | 0.477220 | 2.3:-27318237 | MS.gene040531:intron |
CATCTGCCGCCAATCAGGTT+GGG | 0.478190 | 2.3:-27317513 | MS.gene040531:CDS |
AAAGACACCGACCCTCCAAT+TGG | 0.481279 | 2.3:+27317990 | None:intergenic |
AAGATGGTATTTCTCTAGAA+AGG | 0.481411 | 2.3:-27327909 | MS.gene040531:CDS |
AAGCCCCATCACATTGCAGC+TGG | 0.483352 | 2.3:-27318103 | MS.gene040531:CDS |
TACCATCTTGATCCATCCTC+TGG | 0.483442 | 2.3:+27327923 | None:intergenic |
AGCAAGATAGAAGGCAAAGC+TGG | 0.485813 | 2.3:-27317030 | MS.gene040531:CDS |
CAAATCAATACCATCTCCTT+GGG | 0.487386 | 2.3:+27327865 | None:intergenic |
AAGTCTTGAACTTATGCCTC+CGG | 0.489870 | 2.3:+27317576 | None:intergenic |
GAGCTTCACCTTTAGAAACT+TGG | 0.491392 | 2.3:+27318063 | None:intergenic |
AGACAAGGTAAAGGCTGCAT+TGG | 0.492797 | 2.3:-27317176 | MS.gene040531:CDS |
TCAGCACTTCAACTCATGGC+TGG | 0.493438 | 2.3:-27328016 | None:intergenic |
ATTAATTCTACTTGCAGAGA+GGG | 0.501096 | 2.3:-27318368 | MS.gene040531:CDS |
CTTGGTGATGCCTCTCATCA+AGG | 0.502256 | 2.3:-27327986 | MS.gene040531:CDS |
TAATAGCTTCCTGAGGAGGC+CGG | 0.506409 | 2.3:+27317212 | None:intergenic |
ACCATAATCACATCTTTCAA+TGG | 0.507124 | 2.3:+27321621 | None:intergenic |
CAACAAGAGGTTTATAAGGA+TGG | 0.513293 | 2.3:+27318308 | None:intergenic |
GATCCAAGTGCTGTGGAAGA+AGG | 0.514011 | 2.3:-27316899 | MS.gene040531:CDS |
ATTGAGAGGGAACTGGAAGA+TGG | 0.515287 | 2.3:-27317088 | MS.gene040531:CDS |
TTCTTTATTGCCTCAACAAG+AGG | 0.517796 | 2.3:+27318295 | None:intergenic |
CAGCGACATAATCATGGCCC+TGG | 0.519658 | 2.3:-27316770 | MS.gene040531:CDS |
AGACAGCAAAAGGCATGCTC+AGG | 0.523182 | 2.3:-27316675 | MS.gene040531:CDS |
GCTCCCATCGGATGGGGAGA+AGG | 0.523271 | 2.3:-27318044 | MS.gene040531:CDS |
GGTCTGGGAATTACTGTTTG+CGG | 0.523620 | 2.3:+27317597 | None:intergenic |
CCTTTAGAAACTTGGCAGCA+AGG | 0.525283 | 2.3:+27318071 | None:intergenic |
AAGATCGGAGCAAGGTAAGC+AGG | 0.525399 | 2.3:-27316715 | MS.gene040531:CDS |
TCATCTGCCGCCAATCAGGT+TGG | 0.529055 | 2.3:-27317514 | MS.gene040531:CDS |
GCAGATTATGAAAACTTACA+TGG | 0.530932 | 2.3:-27316986 | MS.gene040531:CDS |
AAAGCAGTCTTCGAAGATGC+AGG | 0.531227 | 2.3:+27317541 | None:intergenic |
TACAAGATGTGATGAGATCT+CGG | 0.533684 | 2.3:-27317357 | MS.gene040531:CDS |
AAGTTGTCTTTATATGGAAG+AGG | 0.534326 | 2.3:+27317388 | None:intergenic |
ATTCTGATTATGTTGAAGAT+CGG | 0.535204 | 2.3:-27316730 | MS.gene040531:CDS |
CATGCAGACGAGCAACCTCA+TGG | 0.538191 | 2.3:-27316950 | MS.gene040531:CDS |
TGTCACCCCACGCCAATTGG+AGG | 0.538659 | 2.3:-27318002 | MS.gene040531:CDS |
AAGGTGAAGCTCCCATCGGA+TGG | 0.540479 | 2.3:-27318052 | MS.gene040531:CDS |
AATCAATACAGACAAGGTAA+AGG | 0.546757 | 2.3:-27317185 | MS.gene040531:CDS |
ATCACATCTTTCAATGGCCG+AGG | 0.547417 | 2.3:+27321627 | None:intergenic |
AATTCCAAGCAACTTGAGCA+AGG | 0.549572 | 2.3:+27318251 | None:intergenic |
CCATAATCACCACTTCTGCC+AGG | 0.549718 | 2.3:+27317475 | None:intergenic |
GGGAAGCAGCGACATAATCA+TGG | 0.552984 | 2.3:-27316776 | MS.gene040531:CDS |
AGGTGAAGCTCCCATCGGAT+GGG | 0.553959 | 2.3:-27318051 | MS.gene040531:CDS |
CCCATGCAAAGAATGACAGA+AGG | 0.560060 | 2.3:-27327426 | MS.gene040531:CDS |
TCCTTATAAACCTCTTGTTG+AGG | 0.561290 | 2.3:-27318305 | MS.gene040531:CDS |
TGGCTCCAGCTGCAATGTGA+TGG | 0.561526 | 2.3:+27318098 | None:intergenic |
ACCGACCCTCCAATTGGCGT+GGG | 0.561546 | 2.3:+27317996 | None:intergenic |
CAGACCTTCTCCCCATCCGA+TGG | 0.562233 | 2.3:+27318040 | None:intergenic |
CACCGACCCTCCAATTGGCG+TGG | 0.566274 | 2.3:+27317995 | None:intergenic |
GTTCCTTCAGCATCATTGGA+AGG | 0.566317 | 2.3:+27317688 | None:intergenic |
TCTGAAGAGAAGCCAGAGGA+TGG | 0.566739 | 2.3:-27327935 | MS.gene040531:CDS |
ATACCGAGAGAGACAGCAAA+AGG | 0.567584 | 2.3:-27316685 | MS.gene040531:CDS |
TCAATACCATCTCCTTGGGA+TGG | 0.567872 | 2.3:+27327869 | None:intergenic |
ATGTACAGTATGATTTGCGC+AGG | 0.568196 | 2.3:+27327828 | None:intergenic |
TGCTTACTCTTCTCACTCTG+AGG | 0.574502 | 2.3:+27317049 | None:intergenic |
AGGATGGTAGTATGCTTAGC+CGG | 0.576389 | 2.3:-27317231 | MS.gene040531:CDS |
GGTCCACAGAAATAAAGCAC+AGG | 0.576974 | 2.3:-27317453 | MS.gene040531:CDS |
GGTGAAGCTCCCATCGGATG+GGG | 0.577081 | 2.3:-27318050 | MS.gene040531:CDS |
ATGCAGACGAGCAACCTCAT+GGG | 0.579917 | 2.3:-27316949 | MS.gene040531:CDS |
CCGCCTTCCAATGATGCTGA+AGG | 0.583274 | 2.3:-27317691 | MS.gene040531:CDS |
AATTCTCCATCCCAAGGAGA+TGG | 0.584166 | 2.3:-27327875 | MS.gene040531:CDS |
CTTGGATCTGGTCCACGTGA+TGG | 0.584782 | 2.3:+27316914 | None:intergenic |
GCTCCAGCTGCAATGTGATG+GGG | 0.585670 | 2.3:+27318100 | None:intergenic |
AAACATGCACACTGTTGCAA+TGG | 0.587320 | 2.3:+27321674 | None:intergenic |
GTCACCCCACGCCAATTGGA+GGG | 0.588890 | 2.3:-27318001 | MS.gene040531:intron |
TTCTGCAAGATTTAGGCATG+AGG | 0.589582 | 2.3:-27327805 | MS.gene040531:CDS |
GCAGTCGCAAGAGGAAAGCA+GGG | 0.589589 | 2.3:-27316823 | MS.gene040531:CDS |
GTCTCTAATCCTGGCAGAAG+TGG | 0.591831 | 2.3:-27317484 | MS.gene040531:CDS |
CCAAGTCAAGCAGTCGCAAG+AGG | 0.592371 | 2.3:-27316832 | MS.gene040531:CDS |
GGGACGCCCAACCTGATTGG+CGG | 0.595700 | 2.3:+27317507 | None:intergenic |
TTACTCTTCTCACTCTGAGG+AGG | 0.598030 | 2.3:+27317052 | None:intergenic |
AGACCTTCTCCCCATCCGAT+GGG | 0.599771 | 2.3:+27318041 | None:intergenic |
GAAGAAAATTCTCCATCCCA+AGG | 0.601366 | 2.3:-27327881 | MS.gene040531:CDS |
AGTTCAGAGAATCAAACAGA+AGG | 0.602821 | 2.3:-27321562 | MS.gene040531:intron |
GGAAGTGTATGAGCAGCAGA+AGG | 0.605362 | 2.3:-27318392 | MS.gene040531:CDS |
CACCTGATAGAGCGGTGGAG+GGG | 0.606320 | 2.3:-27316796 | MS.gene040531:CDS |
CATAATCAGAATGATTATTG+TGG | 0.608235 | 2.3:+27316741 | None:intergenic |
ATTCCAAGCAACTTGAGCAA+GGG | 0.621404 | 2.3:+27318252 | None:intergenic |
TCACCTGATAGAGCGGTGGA+GGG | 0.622953 | 2.3:-27316797 | MS.gene040531:CDS |
CTTCTGCCAGGATTAGAGAC+GGG | 0.624377 | 2.3:+27317487 | None:intergenic |
ACAGTGTGCATGTTTCTAGC+TGG | 0.625515 | 2.3:-27321666 | MS.gene040531:CDS |
GGCAGACCCTTTACCCCATG+AGG | 0.625612 | 2.3:+27316935 | None:intergenic |
CAGATTATGAAAACTTACAT+GGG | 0.625874 | 2.3:-27316985 | MS.gene040531:CDS |
GCTGTTGCAATAGTTACTTG+AGG | 0.626622 | 2.3:+27327484 | None:intergenic |
TGACGATGATCTCATTGAGA+GGG | 0.628970 | 2.3:-27317101 | MS.gene040531:CDS |
AGAAACCCAGATCATAAGGA+TGG | 0.631333 | 2.3:-27317247 | MS.gene040531:CDS |
GCAAACAGTAATTCCCAGAC+CGG | 0.632009 | 2.3:-27317595 | MS.gene040531:CDS |
CCATGCAAAGAATGACAGAA+GGG | 0.632731 | 2.3:-27327425 | MS.gene040531:intron |
CATCAAGGAGCACATCCAGT+TGG | 0.633882 | 2.3:-27327971 | MS.gene040531:CDS |
CGGATGGGGAGAAGGTCTGG+TGG | 0.633974 | 2.3:-27318036 | MS.gene040531:CDS |
TGCAGACGAGCAACCTCATG+GGG | 0.635624 | 2.3:-27316948 | MS.gene040531:CDS |
ATGACGATGATCTCATTGAG+AGG | 0.635737 | 2.3:-27317102 | MS.gene040531:CDS |
TGGACCAGATCCAAGTGCTG+TGG | 0.638378 | 2.3:-27316906 | MS.gene040531:CDS |
GTAAAGGGTCTGCCATCACG+TGG | 0.641024 | 2.3:-27316926 | MS.gene040531:CDS |
ACTTCTGCCAGGATTAGAGA+CGG | 0.644416 | 2.3:+27317486 | None:intergenic |
GATTATTGTGGTGAGGTCCA+GGG | 0.645207 | 2.3:+27316753 | None:intergenic |
TCAGAATGATTATTGTGGTG+AGG | 0.645542 | 2.3:+27316746 | None:intergenic |
TCTAAAGGTGAAGCTCCCAT+CGG | 0.646359 | 2.3:-27318056 | MS.gene040531:CDS |
GAGGTGCAACTTCCAATCAT+CGG | 0.648017 | 2.3:-27317660 | MS.gene040531:CDS |
GCAAAGTTGAAGAAACTCCT+CGG | 0.650820 | 2.3:-27321644 | MS.gene040531:CDS |
TGGATGTGCTCCTTGATGAG+AGG | 0.653967 | 2.3:+27327976 | None:intergenic |
CCGACCCTCCAATTGGCGTG+GGG | 0.655070 | 2.3:+27317997 | None:intergenic |
CCTTCAGCATCATTGGAAGG+CGG | 0.656150 | 2.3:+27317691 | None:intergenic |
ATACTCTGAAGAGAAGCCAG+AGG | 0.656856 | 2.3:-27327939 | MS.gene040531:CDS |
TGCTGTGGAAGAAGGTGAGG+TGG | 0.658109 | 2.3:-27316891 | MS.gene040531:CDS |
AATTAATTCTACTTGCAGAG+AGG | 0.661581 | 2.3:-27318369 | MS.gene040531:CDS |
AGCCAGAGGATGGATCAAGA+TGG | 0.663168 | 2.3:-27327925 | MS.gene040531:CDS |
GAGCTCACCTGATAGAGCGG+TGG | 0.663231 | 2.3:-27316801 | MS.gene040531:CDS |
AACAGTAATTCCCAGACCGG+AGG | 0.669508 | 2.3:-27317592 | MS.gene040531:CDS |
TTATGTTGAAGATCGGAGCA+AGG | 0.670290 | 2.3:-27316723 | MS.gene040531:CDS |
AAGTGCTGTGGAAGAAGGTG+AGG | 0.675240 | 2.3:-27316894 | MS.gene040531:CDS |
AGGGAGCTCACCTGATAGAG+CGG | 0.676372 | 2.3:-27316804 | MS.gene040531:CDS |
GTCCACAGAAATAAAGCACA+GGG | 0.678592 | 2.3:-27317452 | MS.gene040531:CDS |
CACAGAAATAAAGCACAGGG+TGG | 0.690388 | 2.3:-27317449 | MS.gene040531:CDS |
AGGGTGGAAGATGATGTCAA+AGG | 0.696982 | 2.3:-27317433 | MS.gene040531:CDS |
GATGCTGAAGGAACTACTGG+AGG | 0.698671 | 2.3:-27317679 | MS.gene040531:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 27316661 | 27328023 | 27316661 | ID=MS.gene040531 |
chr2.3 | mRNA | 27316661 | 27328023 | 27316661 | ID=MS.gene040531.t1;Parent=MS.gene040531 |
chr2.3 | exon | 27327797 | 27328023 | 27327797 | ID=MS.gene040531.t1.exon1;Parent=MS.gene040531.t1 |
chr2.3 | CDS | 27327797 | 27328023 | 27327797 | ID=cds.MS.gene040531.t1;Parent=MS.gene040531.t1 |
chr2.3 | exon | 27327426 | 27327507 | 27327426 | ID=MS.gene040531.t1.exon2;Parent=MS.gene040531.t1 |
chr2.3 | CDS | 27327426 | 27327507 | 27327426 | ID=cds.MS.gene040531.t1;Parent=MS.gene040531.t1 |
chr2.3 | exon | 27321563 | 27321697 | 27321563 | ID=MS.gene040531.t1.exon3;Parent=MS.gene040531.t1 |
chr2.3 | CDS | 27321563 | 27321697 | 27321563 | ID=cds.MS.gene040531.t1;Parent=MS.gene040531.t1 |
chr2.3 | exon | 27318238 | 27318413 | 27318238 | ID=MS.gene040531.t1.exon4;Parent=MS.gene040531.t1 |
chr2.3 | CDS | 27318238 | 27318413 | 27318238 | ID=cds.MS.gene040531.t1;Parent=MS.gene040531.t1 |
chr2.3 | exon | 27318002 | 27318153 | 27318002 | ID=MS.gene040531.t1.exon5;Parent=MS.gene040531.t1 |
chr2.3 | CDS | 27318002 | 27318153 | 27318002 | ID=cds.MS.gene040531.t1;Parent=MS.gene040531.t1 |
chr2.3 | exon | 27316661 | 27317757 | 27316661 | ID=MS.gene040531.t1.exon6;Parent=MS.gene040531.t1 |
chr2.3 | CDS | 27316661 | 27317757 | 27316661 | ID=cds.MS.gene040531.t1;Parent=MS.gene040531.t1 |
Gene Sequence |
Protein sequence |